Miyakogusa Predicted Gene

Lj0g3v0252459.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0252459.1 Non Chatacterized Hit- tr|I1JG77|I1JG77_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.40655
PE,54.7,6e-17,seg,NULL,CUFF.16560.1
         (102 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G20898.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    45   9e-06

>AT3G20898.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT1G51355.1);
           Has 66 Blast hits to 66 proteins in 10 species: Archae -
           0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr3:7323796-7324203 FORWARD LENGTH=108
          Length = 108

 Score = 45.4 bits (106), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 41  CCTPKAKRFRIPEVLTCXXXXXXXXXXXXXXXCSSINRSPIALFASPDIDLFFLSA 96
           CCTPKAK+ RIPE+LTC                  + R  I  FA P+I+LFF++A
Sbjct: 54  CCTPKAKKSRIPEMLTCPPAPKKQRVSKNCV----LRRRQIVFFAPPEIELFFVNA 105