Miyakogusa Predicted Gene

Lj0g3v0252439.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0252439.1 tr|G7I9G8|G7I9G8_MEDTR U4/U6.U5
tri-snRNP-associated protein OS=Medicago truncatula GN=MTR_1g083910
,69.67,0,seg,NULL; SUBFAMILY NOT NAMED,NULL; SQUAMOUS CELL CARCINOMA
ANTIGEN RECOGNISED BY CYTOTOXIC T LYMPHO,CUFF.16559.1
         (884 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G16780.1 | Symbols: DOT2, MDF | SART-1 family | chr5:5517784-...   736   0.0  
AT3G14700.1 | Symbols:  | SART-1 family | chr3:4940708-4941322 F...    80   6e-15

>AT5G16780.1 | Symbols: DOT2, MDF | SART-1 family |
           chr5:5517784-5521566 REVERSE LENGTH=820
          Length = 820

 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/664 (59%), Positives = 482/664 (72%), Gaps = 22/664 (3%)

Query: 233 GKDDHDGETSAHLSSA-ELEERILKMKETRAKKHSEAASEISSWVSKSRKIQ------KE 285
           G D+ D  +S   +SA +L+ RILKM+E R KK +E AS+  SWV++SRKI+      K+
Sbjct: 160 GGDNVDAASSGKEASALDLQNRILKMREERKKK-AEDASDALSWVARSRKIEEKRNAEKQ 218

Query: 286 RALQLSKVFEEQDNIAVEGSXXXXXXXXXXXXLAGVKVLHGLDKVVEGGTVVLTIKDQPI 345
           RA QLS++FEEQDN+    +            L+GVKVLHGL+KVVEGG V+LT+KDQ +
Sbjct: 219 RAQQLSRIFEEQDNL----NQGENEDGEDGEHLSGVKVLHGLEKVVEGGAVILTLKDQSV 274

Query: 346 LADGDINEDVDMLENVEIGEQKRRDEAYKASKKKPGIYEDKFNDDPSVEKKMLPQYDDPT 405
           L DGD+N ++DMLENVEIGEQKRR+EAY+A+KKK GIY+DKFNDDP  EKKMLPQYD+  
Sbjct: 275 LTDGDVNNEIDMLENVEIGEQKRRNEAYEAAKKKKGIYDDKFNDDPGAEKKMLPQYDEAA 334

Query: 406 ADEGLTLDERGRFTGEAXXXXXXXXXXXTGDSSTNNLEDLTSSGKVSSDYYTQEEMXXXX 465
            DEG+ LD +GRFTGEA            G  +T+  EDL SS KVSSDY++QEEM    
Sbjct: 335 TDEGIFLDAKGRFTGEAEKKLEELRKRIQG-QTTHTFEDLNSSAKVSSDYFSQEEMLKFK 393

Query: 466 XXXXXXXXXXXXXXDINALEAEAISSGLGVGDLGSRKDASRQAIKDEQERLDAEMRNNAY 525
                         D++ LEAEA++SGLG  DLGSRKD  RQA+K+E+ER++ E R+NAY
Sbjct: 394 KPKKKKQLRKKDKLDLSMLEAEAVASGLGAEDLGSRKDGRRQAMKEEKERIEYEKRSNAY 453

Query: 526 QSAYAKADEASKLLLLEQTINVKAEEDETPVFADDDEDLRKSLEKARRLALKKQEKEVAS 585
           Q A AKADEAS+LL  EQ    K +EDE+ V ADD EDL KSLEKARRLAL K+E E  S
Sbjct: 454 QEAIAKADEASRLLRREQVQPFKRDEDESMVLADDAEDLYKSLEKARRLALIKKE-EAGS 512

Query: 586 GPQAVA-LLATSNHNNEVVDDQAGADSRENKVVFTEMEEFVWGLHIDEEARKPEGEDVFM 644
           GPQAVA L+A+S +     +   G +++EN VVFTEM +FVWGL  + + RKPE EDVFM
Sbjct: 513 GPQAVAHLVASSTNQTTDDNTTTGDETQENTVVFTEMGDFVWGLQRENDVRKPESEDVFM 572

Query: 645 HDDEVAEVRDEQKSDEAGGWTEVKEASEDEQTKSEDKEEIVPDETIHEVSVXXXXXXXXX 704
            +D   +   E K +   G TEV +   D    S D +EI PDE IHEV+V         
Sbjct: 573 EEDVAPKAPVEVKEEHPDGLTEVNDTDMDAAEDSSDTKEITPDENIHEVAVGKGLSGALK 632

Query: 705 XXXDRGSLKESIEWGGRNMDKKKSKLVGIVDDEG----KDAQNK---KEIRIERTDEFGR 757
              DRG+LKE +EWGGRNMDKKKSKLVGIVDD+G    KD ++K   K+IRIERTDEFGR
Sbjct: 633 LLKDRGTLKEKVEWGGRNMDKKKSKLVGIVDDDGGKESKDKESKDRFKDIRIERTDEFGR 692

Query: 758 ILTPKEAFRLISHKFHGKGPGKMKQEKRMKQYHEELRMKQMKSSDTPSLSVERMREAQVR 817
            LTPKEAFRL+SHKFHGKGPGKMK+EKRMKQY EEL++KQMK+SDTPS SV+RMREAQ +
Sbjct: 693 TLTPKEAFRLLSHKFHGKGPGKMKEEKRMKQYQEELKLKQMKNSDTPSQSVQRMREAQAQ 752

Query: 818 SKTPYIVLSGNVKPGQTSDPKSGFATVEKDLPGGLTPMLGDRKVEHFLGIKRKAEPSSAN 877
            KTPY+VLSG+VKPGQTSDP+SGFATVEKD+PG LTPMLGDRKVEHFLGIKRK+EP +++
Sbjct: 753 LKTPYLVLSGHVKPGQTSDPQSGFATVEKDVPGSLTPMLGDRKVEHFLGIKRKSEPGNSD 812

Query: 878 TPKK 881
           TP K
Sbjct: 813 TPPK 816


>AT3G14700.1 | Symbols:  | SART-1 family | chr3:4940708-4941322
           FORWARD LENGTH=204
          Length = 204

 Score = 80.1 bits (196), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/104 (50%), Positives = 76/104 (73%), Gaps = 8/104 (7%)

Query: 725 KKKSKLVGIVDDEGKDAQNK---KEIRIERTDEFGRILTPKEAFRLISHKFHGKGPGKMK 781
           K++ K+VG+ D+  +D + K   K+I+I+R +++GRI+T KEA+R + H FHGKGPGK K
Sbjct: 106 KEEGKVVGVKDNNHEDDRFKDRFKDIQIQRVNKWGRIMTEKEAYRSLCHGFHGKGPGKKK 165

Query: 782 QEKRMKQYHEELRMKQMKSSDTPSLSVERMREAQVRSKTPYIVL 825
           QEK+ K++  E + KQM+SS+    SVER+RE    SKTPYIVL
Sbjct: 166 QEKQRKKH--EDKSKQMESSER---SVERIREIHAISKTPYIVL 204