Miyakogusa Predicted Gene

Lj0g3v0252309.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0252309.1 Non Chatacterized Hit- tr|J3MCE6|J3MCE6_ORYBR
Uncharacterized protein OS=Oryza brachyantha GN=OB06G1,40.18,4e-19,no
description,Cupredoxin; Cu_bind_like,Plastocyanin-like;
PHYTOCYANIN,Plastocyanin-like; Cupredoxin,CUFF.16547.1
         (150 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G15780.1 | Symbols:  | Cupredoxin superfamily protein | chr2:...   100   5e-22
AT2G15770.1 | Symbols:  | Cupredoxin superfamily protein | chr2:...    94   2e-20
AT4G33930.1 | Symbols:  | Cupredoxin superfamily protein | chr4:...    64   5e-11
AT4G34300.1 | Symbols:  | Cupredoxin superfamily protein | chr4:...    62   1e-10

>AT2G15780.1 | Symbols:  | Cupredoxin superfamily protein |
           chr2:6873666-6874701 REVERSE LENGTH=257
          Length = 257

 Score =  100 bits (248), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 63/113 (55%), Gaps = 2/113 (1%)

Query: 32  RSITVGDSHGWSAGTNYTQWATKNSPFHINDTLVFKYPLPGNSTIAQSVYMLPNLWSYTT 91
           R I VG    W+ G NY  WA+K +PF +ND LVFKY  P  +    SVY+LPN  SY  
Sbjct: 142 RKIIVGGDKEWTYGFNYADWASKTAPFFLNDILVFKYNPP--APFTHSVYLLPNPSSYEK 199

Query: 92  CQFRGAKLLGSAAQGAGEGLKVELNQSRPYYFASAEGNAYDCIAGLTKFIAVP 144
           C  +  K++ S  QGAG+G +  L Q +PYY +  E +   C  G  KF  +P
Sbjct: 200 CDVKKGKMIASPKQGAGKGFEFVLKQMKPYYISCGEHDGAHCSNGTMKFTVMP 252


>AT2G15770.1 | Symbols:  | Cupredoxin superfamily protein |
           chr2:6871257-6872245 REVERSE LENGTH=301
          Length = 301

 Score = 94.4 bits (233), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 65/118 (55%), Gaps = 2/118 (1%)

Query: 32  RSITVGDSHGWSAGTNYTQWATKNSPFHINDTLVFKYPLPGNSTIAQSVYMLPNLWSYTT 91
           + I VG S GW  G +Y  WA+KN+PF++ND LVFKY    ++    +VY+  + WSY  
Sbjct: 144 KKIIVGGSDGWKKGLDYKDWASKNAPFYVNDVLVFKY--DKSAKRRNNVYLFKDRWSYMN 201

Query: 92  CQFRGAKLLGSAAQGAGEGLKVELNQSRPYYFASAEGNAYDCIAGLTKFIAVPSSTHL 149
           C  + A+ +GS  +G+ E     L + +PY+FAS E +   C     KF   P  T L
Sbjct: 202 CDIKNARKIGSTRKGSEESFNFTLKKIQPYFFASGEHDGDYCRNHNMKFTIFPVLTVL 259


>AT4G33930.1 | Symbols:  | Cupredoxin superfamily protein |
           chr4:16264389-16265420 REVERSE LENGTH=343
          Length = 343

 Score = 63.5 bits (153), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 60/123 (48%), Gaps = 16/123 (13%)

Query: 31  GRSITVGDSHGWSAGTNYTQWATKNSPFHINDTLVFKY--------PLPGNSTIAQSVYM 82
           GR I V     W  G  YT+W  K++PF+++D LVFKY             +     VY+
Sbjct: 221 GRKIAVTV---WKNGYGYTEWTAKHAPFYVSDVLVFKYNNDDQTQSKTKHRNKKKNDVYL 277

Query: 83  LPNLWSYTTCQF-RGAKLLGSAAQGAGEGLKVELNQSRPYYFASAEGNAYDCIAGLTKFI 141
           LP++ S+  C   RG KL+      +  G K+ L + + YYFAS + N  +C   + KF 
Sbjct: 278 LPDMKSFKRCNVARGKKLVARGGS-SSRGFKLLLRKVQTYYFASGDHN--ECNHNM-KFS 333

Query: 142 AVP 144
             P
Sbjct: 334 VHP 336


>AT4G34300.1 | Symbols:  | Cupredoxin superfamily protein |
           chr4:16412773-16413714 FORWARD LENGTH=313
          Length = 313

 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 62/131 (47%), Gaps = 23/131 (17%)

Query: 27  AGSDGRSITVGDSHGWSAGTNYTQWATKNSPFHINDTLVFKYPLPGNSTIAQS------- 79
           A S GR I V     W  G  YT+W  K++PF++ND LVF Y    N+   QS       
Sbjct: 186 APSLGRKIAVTV---WKNGYGYTEWTAKHAPFYVNDVLVFTY---NNNDQTQSKTKHHHD 239

Query: 80  -----VYMLPNLWSYTTCQF-RGAKLLGSAAQGAGEGLKVELNQSRPYYFASAEGNAYDC 133
                VY+LP++ S+  C   RG KL+      +  G K+ L +   YYF S + N  DC
Sbjct: 240 KKKNDVYLLPDMKSFKRCNVARGKKLVARGGS-SSRGFKLLLRKVHTYYFVSGDHN--DC 296

Query: 134 IAGLTKFIAVP 144
              + KF   P
Sbjct: 297 NHNM-KFSVHP 306