Miyakogusa Predicted Gene

Lj0g3v0252129.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0252129.1 Non Chatacterized Hit- tr|K4BS36|K4BS36_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,41.86,2e-18,ZF_PHD_1,Zinc finger, PHD-type, conserved
site,CUFF.16532.1
         (294 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G43770.2 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...    98   9e-21
AT3G02890.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...    69   5e-12
AT1G43770.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...    65   7e-11
AT5G16680.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...    61   1e-09

>AT1G43770.2 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr1:16548509-16550257 FORWARD LENGTH=431
          Length = 431

 Score = 97.8 bits (242), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 50/125 (40%), Positives = 78/125 (62%), Gaps = 5/125 (4%)

Query: 161 ARPLCDPVWKGQLRLNNG---TRFLLAAYMSSKACSKVHSAVTGVPKRLDAEMLLRCVIW 217
           A+P+  P+W+G + +  G   T   + A++SS AC KVH   + +  RL AE+L R  +W
Sbjct: 285 AQPIKIPIWRGLMSVKGGNSCTMDGIVAHVSSLACPKVHETASSLKGRLSAEILPRLEVW 344

Query: 218 PKSFAMFPSNAD-SIALYLFPRYE-RDEKIFDGVLHNVIEQDLALRAVVNNVELLIFSSH 275
           PK+F       D S+AL+ FP  E  DEK+FD ++  + + D A+R V+N+ ELL+F+S+
Sbjct: 345 PKTFLKNGGPKDESVALFFFPSSESNDEKVFDSLVDKMKKNDSAMRCVLNDAELLLFTSY 404

Query: 276 LLPPD 280
           +LP D
Sbjct: 405 MLPKD 409


>AT3G02890.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr3:640828-645303 FORWARD LENGTH=994
          Length = 994

 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 73/141 (51%), Gaps = 8/141 (5%)

Query: 150 MCCPEIDKYSHARPLCDPVWKGQLRLNNGTRFLLA------AYMSSKACSKVHSAVTGVP 203
           +  P +   + A P  + +W+G L +   +R L A      AY+S+ A  KV   V   P
Sbjct: 682 VAAPNVLSTTSAIPKPEYIWQGDLEVQK-SRNLSAMHSGIQAYLSTLASPKVVEVVKQFP 740

Query: 204 KRLDAEMLLRCVIWPKSFAMFPSNADSIALYLFPR-YERDEKIFDGVLHNVIEQDLALRA 262
           +++    + R   WP  F    +    +AL+ F +  E  EK +  ++ N+I++DLAL+ 
Sbjct: 741 EKVTLNEVPRLSSWPAQFQDTGAKEQHVALFFFAKDIESYEKNYKPLVDNMIQKDLALKG 800

Query: 263 VVNNVELLIFSSHLLPPDDRR 283
            +  VELLIF+S+ LP D +R
Sbjct: 801 NLEGVELLIFASNQLPQDCQR 821


>AT1G43770.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr1:16548509-16549907 FORWARD LENGTH=371
          Length = 371

 Score = 64.7 bits (156), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 4/85 (4%)

Query: 161 ARPLCDPVWKGQLRLNNG---TRFLLAAYMSSKACSKVHSAVTGVPKRLDAEMLLRCVIW 217
           A+P+  P+W+G + +  G   T   + A++SS AC KVH   + +  RL AE+L R  +W
Sbjct: 285 AQPIKIPIWRGLMSVKGGNSCTMDGIVAHVSSLACPKVHETASSLKGRLSAEILPRLEVW 344

Query: 218 PKSFAMFPSNAD-SIALYLFPRYER 241
           PK+F       D S+AL+ FP  ER
Sbjct: 345 PKTFLKNGGPKDESVALFFFPSSER 369


>AT5G16680.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr5:5467534-5472956 REVERSE LENGTH=1311
          Length = 1311

 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 64/126 (50%), Gaps = 6/126 (4%)

Query: 159 SHARPLCDPVWKGQLRL-----NNGTRFLLAAYMSSKACSKVHSAVTGVPKRLDAEMLLR 213
           S A P  + +W+G L +      +     + A++S+ A  +V   V   P+      + R
Sbjct: 828 SSAIPDHEFIWQGDLEVRKIINQSAMHSGIQAHLSTLASPRVAEVVNKFPETFSLNEVPR 887

Query: 214 CVIWPKSFAMFPSNADSIALYLFPR-YERDEKIFDGVLHNVIEQDLALRAVVNNVELLIF 272
              WP  F    +    IAL+ F +  E  E+ +  ++ N+I+ DLAL+  ++NV+LLIF
Sbjct: 888 KSTWPTQFEKLGTKEAHIALFFFAKDTESYERNYKPLVDNMIKNDLALKGNLDNVDLLIF 947

Query: 273 SSHLLP 278
           +S+ LP
Sbjct: 948 ASNQLP 953