Miyakogusa Predicted Gene
- Lj0g3v0251269.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0251269.1 Non Chatacterized Hit- tr|C6TIE0|C6TIE0_SOYBN
Putative uncharacterized protein OS=Glycine max PE=2
S,24.69,1e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL; no
description,NULL; FBA_3,F-box associated domain,,CUFF.16464.1
(501 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G06240.1 | Symbols: | F-box family protein | chr3:1887336-18... 79 7e-15
AT3G07870.1 | Symbols: | F-box and associated interaction domai... 69 1e-11
AT1G33530.1 | Symbols: | F-box family protein | chr1:12159884-1... 65 2e-10
AT5G15660.1 | Symbols: | F-box and associated interaction domai... 58 1e-08
AT1G47340.1 | Symbols: | F-box and associated interaction domai... 57 2e-08
AT1G30930.1 | Symbols: | F-box family protein | chr1:11014783-1... 55 8e-08
AT1G33020.1 | Symbols: | F-box and associated interaction domai... 52 1e-06
AT4G38870.1 | Symbols: | F-box and associated interaction domai... 52 1e-06
AT1G53550.1 | Symbols: | F-box family protein | chr1:19983411-1... 51 2e-06
AT1G32600.1 | Symbols: | F-box associated ubiquitination effect... 50 4e-06
>AT3G06240.1 | Symbols: | F-box family protein |
chr3:1887336-1888619 FORWARD LENGTH=427
Length = 427
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 110/429 (25%), Positives = 176/429 (41%), Gaps = 66/429 (15%)
Query: 42 LPSHITADILQRLPFKSVCKTWKALIICKSVCKSWKALITGPHFAKLLFQHAPAGLVIWA 101
LP I +IL RLP KS+ + + V K + L + P FAK+ + +
Sbjct: 36 LPPEIITEILLRLPAKSIGR-------FRCVSKLFCTLSSDPGFAKIHLDLILRNESVRS 88
Query: 102 RDRKL---SRTLYLLEFDSEKLGNDD----EGQFCCCEDSCIKPECNCHFKLEHKLKLPL 154
RKL S LY L+F+S G D E + +D I E ++ +H
Sbjct: 89 LHRKLIVSSHNLYSLDFNSIGDGIRDLAAVEHNYPLKDDPSIFSEMIRNYVGDHLYD--- 145
Query: 155 RGAELDFDKRDETAQRGGRRIYNSLPNIHRAKIDEFAVVNSCNGLLCLSDLDRNYFVVCN 214
RR+ L N + + +V S NGL+C+S + F+ N
Sbjct: 146 -----------------DRRVMLKL-NAKSYRRNWVEIVGSSNGLVCISPGEGAVFLY-N 186
Query: 215 PVTGEFIRLPEPTRIYKYDFRIVNV---GFGFQPRTNEYKVVRMFRGHPTLQDNNNLIIG 271
P TG+ RLPE R ++ N GFGF T++YK+V++ T +D I+
Sbjct: 187 PTTGDSKRLPENFRPKSVEYERDNFQTYGFGFDGLTDDYKLVKLV---ATSED----ILD 239
Query: 272 VEIHTLGTSTWR---NVEVDHRTDPFLECPTCVSGALYWICYGDETELSILCXXXXXXXX 328
+++L +WR N+ +H D +GA++W+ ++
Sbjct: 240 ASVYSLKADSWRRICNLNYEH-NDGSYTSGVHFNGAIHWVFTESRHNQRVVVAFDIQTEE 298
Query: 329 XXXX---XXAGLC---LNDVTMGEYGGSLYICNSSSTGGHIEMWIMKKNGFEESWTLVIS 382
A C ++ +G G L + N S H ++W+M + G +SW+ I
Sbjct: 299 FREMPVPDEAEDCSHRFSNFVVGSLNGRLCVVN-SCYDVHDDIWVMSEYGEAKSWSR-IR 356
Query: 383 SDILSRPDDSLDLPVLKHPKNDAAILICHSGDRFVYYEPEKNGFKIFKVRGTQST--FEA 440
++L R + L KND +L+ GD V Y E N + G + + FEA
Sbjct: 357 INLLYRS-----MKPLCSTKNDEEVLLELDGD-LVLYNFETNASSNLGICGVKLSDGFEA 410
Query: 441 IPHIPSLIS 449
++ SLIS
Sbjct: 411 NTYVESLIS 419
>AT3G07870.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr3:2510871-2512124
FORWARD LENGTH=417
Length = 417
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 108/458 (23%), Positives = 170/458 (37%), Gaps = 126/458 (27%)
Query: 40 DDLPSHITADILQRLPFKSVCKTWKALIICKSVCKSWKALITGPHFAKLLFQHAPAGLVI 99
+ LP I ADI RLP S+ + VC+SW++++T QH
Sbjct: 26 ESLPEDIIADIFSRLPISSIAR-------LMFVCRSWRSVLT---------QH------- 62
Query: 100 WARDRKLSRTLYLLEFDSEKLGNDDEGQFCCCEDSCIKPECNCHFKLEHKLKLPLRGAEL 159
G+ S KP H + ++ L +L
Sbjct: 63 --------------------------GRLSSSSSSPTKPCLLLH--CDSPIRNGLHFLDL 94
Query: 160 DFDKRDETAQRGGRRIYNSLPNIHRAKIDEFAVVNSCNGLLCLSD-LDRNYFVVCNPVTG 218
+++ ++ R +S+P EF VV SCNGLLCLSD L + + NP T
Sbjct: 95 SEEEKRIKTKKFTLRFASSMP--------EFDVVGSCNGLLCLSDSLYNDSLYLYNPFTT 146
Query: 219 EFIRLPEPTRIYKYDFRIVNVGFGFQPRTNEYKVVRM--FRGHPTLQDNNNLIIG----- 271
+ LPE + Y +D +V GFGF T EYKV+++ FRG + +NN + G
Sbjct: 147 NSLELPECSNKY-HDQELV-FGFGFHEMTKEYKVLKIVYFRGSSS--NNNGIYRGRGRIQ 202
Query: 272 -----VEIHTLGTST------WRNVEVDHRTDPFLECPTCVSGALYWICYG--------- 311
V+I TL + T WR++ V+G L+++
Sbjct: 203 YKQSEVQILTLSSKTTDQSLSWRSLGKAPYKFVKRSSEALVNGRLHFVTRPRRHVPDRKF 262
Query: 312 -----DETELSILCXXXXXXXXXXXXXXAGL--CLNDVTMGEYGGSLYICNSSSTGGHIE 364
++ E + L CL V G Y G ++
Sbjct: 263 VSFDLEDEEFKEIPKPDCGGLNRTNHRLVNLKGCLCAVVYGNY-------------GKLD 309
Query: 365 MWIMKKNGFEESW--TLVISSDILSRPDDSLDLP--VLKHPKN-----------DAAILI 409
+W+MK G +ESW I + + +LD P + K+ +N + IL+
Sbjct: 310 IWVMKTYGVKESWGKEYSIGTYLPKGLKQNLDRPMWIWKNAENGKVVRVLCLLENGEILL 369
Query: 410 CHSGDRFVYYEPEKNGFKIFKVRGTQSTFEAIPHIPSL 447
+ V Y+P+ FK G + F + H +L
Sbjct: 370 EYKSRVLVAYDPKLGKFKDLLFHGLPNWFHTVVHAGTL 407
>AT1G33530.1 | Symbols: | F-box family protein |
chr1:12159884-12161314 FORWARD LENGTH=441
Length = 441
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 91/348 (26%), Positives = 131/348 (37%), Gaps = 90/348 (25%)
Query: 41 DLPSHITADILQRLPFKSVCKTWKALIICKSVCKSWKALITGPHFAKLLFQHAPAGLVIW 100
+LP + +ILQRLP K L+ KS+ K WK+LI H A+
Sbjct: 96 ELPDVLVEEILQRLPVK-------YLVRLKSISKGWKSLIESDHLAE------------- 135
Query: 101 ARDRKLSRTLYLLEFDSEKLGNDDEGQFCCCEDSCIKPECNCHFKLEHKLKLPLRGAELD 160
+ L LLE +K G + E S K C F
Sbjct: 136 -------KHLRLLE---KKYGLKEIK--ITVERSTSKSICIKFF---------------- 167
Query: 161 FDKRDETAQRGGRRIYNSLPNIHRAKIDEFAVVNSCNGLLCLSDLDRNYFVVCNPVTGEF 220
++R G NS + D V SCNGL+C+ +LD Y + NP+TG
Sbjct: 168 -------SRRSGMNAINSDSD------DLLRVPGSCNGLVCVYELDSVYIYLLNPMTG-V 213
Query: 221 IRLPEPTRIYKYDFRIVNVGFGFQPRTNEYKVVRMFRGHPTLQDNNNLIIGVEIHTLGTS 280
R P R K ++VGFG T YKV+ ++ +G + L T+
Sbjct: 214 TRTLTPPRGTK-----LSVGFGIDVVTGTYKVMVLYGFDR---------VGTVVFDLDTN 259
Query: 281 TWRNVEVDHRTDPFLEC-------PTCVSGALYWICYGDETELSILCXXXXXXXXXXXXX 333
WR P L C P V+G+L+W+ D +E IL
Sbjct: 260 KWRQRYKTAGPMP-LSCIPTPERNPVFVNGSLFWLLASDFSE--ILVMDLHTEKFRTLSQ 316
Query: 334 XAGLCLNDVTMGE-YGGSL--YICNSSSTGG-HIEMWIMKKNGFEESW 377
+ DV+ G Y SL +C S+ G H +W++ ++ E W
Sbjct: 317 PNDMDDVDVSSGYIYMWSLEDRLCVSNVRQGLHSYVWVLVQDELSEKW 364
>AT5G15660.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr5:5095652-5097041
FORWARD LENGTH=438
Length = 438
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 112/267 (41%), Gaps = 29/267 (10%)
Query: 211 VVCNPVTGEFIRLPEPTRIYKYDFRIVNVGFGFQPRTNEYKVVRM---FRGHPTLQDNNN 267
+V NP TG+FI LP P K ++V FG+ +++YKV+ M RGHP + +
Sbjct: 139 IVINPTTGKFITLPRP----KTRRKLVISFFGYDSVSDQYKVLCMTERLRGHPEEASSQH 194
Query: 268 LIIGVEIHTLGT--STWR--NVEVDHRTDPFLECPTCVSGALYWICYGDETELSILCXXX 323
+++TLG +W+ N + HR P+ C++G +Y+I E C
Sbjct: 195 -----QVYTLGAKQKSWKMINCSIPHR--PWSWNAVCINGVVYYIAKTGEGMFR-RCLMR 246
Query: 324 XXXXXXXXXXXAGL------CLNDVTMGEYGGSLYICNSSSTGGHIEMWIMKKNGFEESW 377
L L+D + Y G + I N + + ++W+M + G + W
Sbjct: 247 FDLKSDNLDLCTILPEEIQTSLHDYFLINYKGKVAIPNQPNFYTY-DVWVMNQEGGKIEW 305
Query: 378 TLVISSDILSRPDDSLDLPVLKHPKNDAAIL--ICHSGDRFVY-YEPEKNGFKIFKVRGT 434
I+ I R L V IL ++ + +V+ Y P+ N F+ +V+
Sbjct: 306 LKNITFTIKPRKGFVRYLFVTGTTHTGEFILAPTSYTDEFYVFHYNPDMNSFRKIRVQAP 365
Query: 435 QSTFEAIPHIPSLISLKDVVQGDNIEV 461
F + S +++ DN+ +
Sbjct: 366 GVKFSFAQKASVVFSDHSLLRLDNLHI 392
>AT1G47340.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr1:17354123-17356494
REVERSE LENGTH=459
Length = 459
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/317 (22%), Positives = 126/317 (39%), Gaps = 69/317 (21%)
Query: 8 TSSASPTRKGKRVAVANEVDNEPESQQLRVSYDDLPSHITADILQRLPFKSVCKTWKALI 67
T+ SP R+ R + VD + + + LP + +IL+RLP KSV +
Sbjct: 5 TAPNSPKRR--RCSSFAAVDLVGSANRTFMVSVSLPKELILEILKRLPAKSVKR------ 56
Query: 68 ICKSVCKSWKALITGPHFAKLLFQHAPAGL--VIWARDRKLSRTLYLLEFDSEKLGNDDE 125
V K W ++++ PHF +L + + +++A ++ +L+ L ++L ++
Sbjct: 57 -FHCVSKQWASMLSCPHFRELFLTRSSSAQPRLLFAIEKHNQWSLFSL---PQRLTPYEK 112
Query: 126 GQFCCCEDSCIKPECNCHFKLEHKLKLPLRGAELDFDKRDETAQRGGRRI----YNSLPN 181
+ PE + F + L P F G I Y+ +P
Sbjct: 113 SSSSSVVVT---PEFHMKFPPDGMLIYPRHDRRFSFGYASGLMYFYGMWINEHDYDGVP- 168
Query: 182 IHRAKIDEFAVVNSCNGLLCLSDLDRNYFVVCNPVTGEFIRLPEPTRIYKYDFRIVNVGF 241
V+CNP+TG + LP R +R F
Sbjct: 169 -----------------------------VICNPLTGRYASLPFLER-----YRKAFSFF 194
Query: 242 GFQPRTNEYKVVRMFRGHPTLQDNNNLIIGVEIHTLGTS--TWRNVEVDHRTDPFLECPT 299
GF P +YKV +F +P+ D++ ++ T GT +WR +E + D +
Sbjct: 195 GFDPIEKQYKV--LFMAYPSGPDHHTVL------TFGTGEMSWRKIECSVKHD-IVSDGI 245
Query: 300 CVSGALYWICYGDETEL 316
C++G +Y++ GD +E
Sbjct: 246 CINGVMYYL--GDTSEF 260
>AT1G30930.1 | Symbols: | F-box family protein |
chr1:11014783-11015913 REVERSE LENGTH=376
Length = 376
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 211 VVCNPVTGEFIRLPEPTRIYKYDFRIVNVGFGFQPRTNEYKVVRMFRGHPTLQDNNNLII 270
V+C+P+TG+++ LPEP Y + GF P E+KV+ M G+ +D ++ I+
Sbjct: 126 VLCDPLTGKYVILPEPRVFGMYSY------LGFDPVDKEFKVLFMASGYTASKDVDHYIL 179
Query: 271 GVEIHTLGTSTWRNVEVDHRTDPFLECPTCVSGALYWICYGDETELSILC 320
+ G WR ++ +P L C++G LY+ + I+C
Sbjct: 180 TLRT---GELKWRTIQCPFTHEP-LWTRICINGVLYYSAMNSDGNYVIVC 225
>AT1G33020.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr1:11962746-11964832
FORWARD LENGTH=548
Length = 548
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 109/270 (40%), Gaps = 34/270 (12%)
Query: 208 NYFVVCNPVTGEFIRLPEPTRIYKYDFRIVNVGFGFQPRTNEYKVVRMFRGHPTLQDNNN 267
++ V+CNP+TG++ L T K F GF P ++KV+RM + N+
Sbjct: 130 DFRVICNPITGQYAILQLITFHEKRSF------LGFDPIDKQFKVLRM-------KYNDR 176
Query: 268 LIIGVEIHTL--GTSTWRNVEVDHRTDPFLECPTCVSGALYWICYGDETELSILCXXXXX 325
I+ I TL G WR + +PF E C +G LY++ + ++C
Sbjct: 177 GIVVHHILTLEPGKMRWRKIRCPLAHEPFWE-EICANGVLYYLAEPTDGGSYVICCFDVR 235
Query: 326 XXXXXXXXXAGLCLNDVTM------GEYGGSLYICNSSSTGGHIE--MWIMKKNGFEESW 377
C D ++ G+ GG + ++ +E MW++ ++ ++ W
Sbjct: 236 SEKFKFIDAK--CFGDFSIQLINYKGKLGGISWKYDTVDGKRTVELYMWVL-EDVEKQKW 292
Query: 378 TLVISSDILSRPDDSLDLPVLK-HPKNDAAILICHSGDRF--VYYEPEKNGFKIFKVRGT 434
S + P +S V K D + ++ F Y PEK F+ ++ G
Sbjct: 293 ----SKYVYPLPGNSYHYSVAGVTAKGDIVFVKTYTSKPFYVFYVNPEKKTFQRVEIHGN 348
Query: 435 QSTFEAIPHIPSLISLKDVVQGDNIEVMYA 464
F+ + + + + +Q D ++ YA
Sbjct: 349 HEVFDTNNLVYAFVDHVEDLQFDVMKKTYA 378
>AT4G38870.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr4:18132583-18133863
REVERSE LENGTH=426
Length = 426
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 195 SCNGLLCLSDLDRNYFVVCNPVTGEFIRLPEPTRIYKYDFRIVNVGFGFQPRTNEYKVVR 254
S +GL+C + V+ NP T I LP+ K R +N G+ P YKVV
Sbjct: 157 SVHGLICYGP--PSSLVIYNPCTRRSITLPK----IKAGRRAINQYIGYDPLDGNYKVVC 210
Query: 255 MFRGHPTLQDNNNLIIGVEIHTLGT--STWRNV-EVDHRTDPFLECPTCVSGALYWICY 310
+ RG P L++ L +++ TLGT S+WR + ++ P E C++G LY+ +
Sbjct: 211 ITRGMPMLRNRRGLAEEIQVLTLGTRDSSWRMIHDIIPPHSPVSE-ELCINGVLYYRAF 268
>AT1G53550.1 | Symbols: | F-box family protein |
chr1:19983411-19984637 FORWARD LENGTH=408
Length = 408
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/353 (19%), Positives = 127/353 (35%), Gaps = 80/353 (22%)
Query: 39 YDDLPSHITADILQRLPFKSVCKTWKALIICKSVCKSWKALITGPHFAKLLFQHAPAGLV 98
+D +P + +IL RL + + + C+ V K W ++I P++ +L + A
Sbjct: 32 FDPIPVDLVINILSRLSLECIAR-------CRCVSKLWSSIIRRPNYNQLFPVKSSAT-- 82
Query: 99 IWARDRKLSRTLYLLEFDSEKLGNDDEGQFCCCEDSCIKPECNCHFKLEHKLKLPLRGAE 158
R L++ + E N F S +
Sbjct: 83 --------PRLLFVFKVARELFFNSSPQHFNPNNSSLVA--------------------- 113
Query: 159 LDFDKRDETAQRGGRRIYNSLPNIHRAKIDEFAVVNSCNGLLCLSDLDRNYF--VVCNPV 216
SL + + + +GL+C ++ NY ++ NP
Sbjct: 114 ------------------TSLQKTSSTRFSQ--LCRPVHGLICSQHIEENYLFALISNPT 153
Query: 217 TGEFIRLPEPTRIYKYD----FRIVNVGFGFQPRTNEYKVVR---MFRG-HPTLQDNNNL 268
TGE+I LP+ R+ + + V FG+ P ++KV+R + RG H + L
Sbjct: 154 TGEYIALPK-QRMEEMNSETIIEKVRYSFGYDPIDKQFKVLRITWLHRGSHEWSSEYQVL 212
Query: 269 IIGVEIHTLGTSTWRNVEVDHRTDPFLECPTCVSGALYWICYGDETELSILCXXXXXXXX 328
+G G +WRN + + C++G LY+ D + +I+C
Sbjct: 213 TLG-----FGNISWRNTQCCVVHYLLEDSGICINGVLYYPARLDNRKYTIVCFDVMTEKF 267
Query: 329 XXXXXXAGLCLN---DVTMGEYGGSLYICNSSSTGGHIEMWIMKKNGFEESWT 378
+ + ++ +Y G L C T E+W++ +N E W+
Sbjct: 268 SFTSIDKDMTIMTNLSFSLIDYKGKLGACICDHT--LFELWVL-ENAEEHKWS 317
>AT1G32600.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr1:11794802-11795683 FORWARD
LENGTH=293
Length = 293
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 97/255 (38%), Gaps = 50/255 (19%)
Query: 195 SCNGLLCLSDLDRNYFVVCNPVTGEFIRLPEPTRIYKYDFRIVNVGFGFQPRTNEYKVVR 254
SC G++CL+ D N + P + +F R+P R + +GFG+ ++YK+V
Sbjct: 47 SCRGVICLTRKDNNELAIWKPTSTKFKRVPMIKRGQTQNL----LGFGYDRVLDDYKIV- 101
Query: 255 MFRGHPTLQDNNNLIIGVEIHTLGTSTWRNVEVDHRTDPFLE--CPTCVSGALYWICYGD 312
T+ D I T S+WR ++ +D F + T V +YWI
Sbjct: 102 ------TIIDKKTYIF-----TFKESSWRESKLIPSSDCFFKERTGTVVDNCMYWIANRF 150
Query: 313 ETELSILC---XXXXXXXXXXXXXXAGLCLN---DVTMGEY---------GGSLYICNSS 357
E ILC +GL N DV+ GE +L +C
Sbjct: 151 NKEKFILCFDFVNEEYSKLNVPMMLSGLEFNSWLDVSRGELCVINHYPSVDDNLCVCRRE 210
Query: 358 -STGGHIEMWIMKKNGFEESWTLVISSDILSRPDDSLDLPVLKHPKNDAAILI--CHSG- 413
+G I W + W V +D D+ +D+ + KND ++ C S
Sbjct: 211 IRSGKKIARWD------SDPWMNVAGND-----DEPVDIRFVCIAKNDEVFVVVRCRSKE 259
Query: 414 --DRFVYYEPEKNGF 426
D Y E+N F
Sbjct: 260 EEDNVFVYNKEQNEF 274