Miyakogusa Predicted Gene

Lj0g3v0250909.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0250909.1 Non Chatacterized Hit- tr|D7KCT1|D7KCT1_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,74.58,6e-19,seg,NULL,CUFF.16430.1
         (122 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G28150.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    97   3e-21

>AT1G28150.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: plastoglobule;
           EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
           growth stages; Has 96 Blast hits to 96 proteins in 44
           species: Archae - 0; Bacteria - 56; Metazoa - 0; Fungi -
           0; Plants - 40; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr1:9835122-9835842 REVERSE
           LENGTH=123
          Length = 123

 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 44/59 (74%), Positives = 52/59 (88%)

Query: 62  FNPAQDPIVQEALKEPVAFLGGMFAGILRLDLNEEPLKEWVTRTVEAAGVDEEETTTEG 120
           FN  Q+PI+ EALKEP+AFLGGMFAG+LRLDLNEEPLK+WVTRTVEA+G+ EEE   +G
Sbjct: 50  FNLPQEPILSEALKEPIAFLGGMFAGLLRLDLNEEPLKDWVTRTVEASGITEEEVDADG 108