Miyakogusa Predicted Gene

Lj0g3v0250779.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0250779.1 Non Chatacterized Hit- tr|Q6BBR1|Q6BBR1_LOTJA
Putative uncharacterized protein Lj-CDC50 like 1
OS=Lo,99.26,0,seg,NULL; CDC50,Protein of unknown function DUF284,
transmembrane eukaryotic; SUBFAMILY NOT
NAMED,NU,NODE_29244_length_590_cov_128.584747.path2.1
         (135 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G12740.1 | Symbols: ALIS1 | ALA-interacting subunit 1 | chr3:...   179   5e-46
AT1G54320.1 | Symbols:  | LEM3 (ligand-effect modulator 3) famil...   177   2e-45
AT1G79450.1 | Symbols: ALIS5 | ALA-interacting subunit 5 | chr1:...   166   6e-42
AT1G16360.1 | Symbols:  | LEM3 (ligand-effect modulator 3) famil...   149   8e-37
AT5G46150.1 | Symbols:  | LEM3 (ligand-effect modulator 3) famil...   132   1e-31
AT5G46150.2 | Symbols:  | LEM3 (ligand-effect modulator 3) famil...   132   1e-31
AT1G79450.2 | Symbols: ALIS5 | ALA-interacting subunit 5 | chr1:...    92   1e-19

>AT3G12740.1 | Symbols: ALIS1 | ALA-interacting subunit 1 |
           chr3:4049739-4051561 FORWARD LENGTH=350
          Length = 350

 Score =  179 bits (454), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 85/120 (70%), Positives = 100/120 (83%), Gaps = 2/120 (1%)

Query: 18  RRNTKRPKYSKFTQQELPACKPILTPRAVISAFLLVSVVFVPIGVASLIASRKVVEIVHR 77
           RRN+KRPKYSKFTQQELPACKPILTP  VIS FL++SV+F+P+GV SL AS+ VVEIV R
Sbjct: 23  RRNSKRPKYSKFTQQELPACKPILTPGWVISTFLIISVIFIPLGVISLFASQDVVEIVDR 82

Query: 78  YESSCLKGVD--NKIAYIQSSADKTCKITLKVDKHMKSPIYVYYQLDNFYQNHRRYVKSR 135
           Y+S+C+   D  NK+AYIQ + +K+C  TL V K MK PIYVYYQL+NFYQNHRRYVKSR
Sbjct: 83  YDSACIPLSDRANKVAYIQGTGNKSCTRTLIVPKRMKQPIYVYYQLENFYQNHRRYVKSR 142


>AT1G54320.1 | Symbols:  | LEM3 (ligand-effect modulator 3) family
           protein / CDC50 family protein | chr1:20275732-20277793
           REVERSE LENGTH=349
          Length = 349

 Score =  177 bits (449), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 84/120 (70%), Positives = 96/120 (80%), Gaps = 2/120 (1%)

Query: 18  RRNTKRPKYSKFTQQELPACKPILTPRAVISAFLLVSVVFVPIGVASLIASRKVVEIVHR 77
           R+N+KRPKYSKFTQQELPACKPILTP  VIS FL+VSV+F+P+GV SL AS+ VVEIV R
Sbjct: 22  RKNSKRPKYSKFTQQELPACKPILTPGWVISTFLIVSVIFIPLGVISLFASQDVVEIVDR 81

Query: 78  YESSCLKGV--DNKIAYIQSSADKTCKITLKVDKHMKSPIYVYYQLDNFYQNHRRYVKSR 135
           Y++ C+      NK+AYIQ   DK C   LKV K MK PIYVYYQL+NFYQNHRRYVKSR
Sbjct: 82  YDTECIPAPARTNKVAYIQGDGDKVCNRDLKVTKRMKQPIYVYYQLENFYQNHRRYVKSR 141


>AT1G79450.1 | Symbols: ALIS5 | ALA-interacting subunit 5 |
           chr1:29887831-29889904 FORWARD LENGTH=350
          Length = 350

 Score =  166 bits (419), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 77/120 (64%), Positives = 93/120 (77%), Gaps = 2/120 (1%)

Query: 18  RRNTKRPKYSKFTQQELPACKPILTPRAVISAFLLVSVVFVPIGVASLIASRKVVEIVHR 77
           ++ +KRPKYS+FTQQELPACKPILTPR VI  FL+  VVF+P+GV  L AS+ VVEIV R
Sbjct: 22  KKTSKRPKYSRFTQQELPACKPILTPRWVILTFLVAGVVFIPLGVICLFASQGVVEIVDR 81

Query: 78  YESSCL--KGVDNKIAYIQSSADKTCKITLKVDKHMKSPIYVYYQLDNFYQNHRRYVKSR 135
           Y++ C+     +N +AYIQ   DK CK T+ V K MK P+YVYYQL+NFYQNHRRYVKSR
Sbjct: 82  YDTDCIPTSSRNNMVAYIQGEGDKICKRTITVTKAMKHPVYVYYQLENFYQNHRRYVKSR 141


>AT1G16360.1 | Symbols:  | LEM3 (ligand-effect modulator 3) family
           protein / CDC50 family protein | chr1:5593493-5595179
           REVERSE LENGTH=336
          Length = 336

 Score =  149 bits (375), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 70/111 (63%), Positives = 85/111 (76%), Gaps = 2/111 (1%)

Query: 27  SKFTQQELPACKPILTPRAVISAFLLVSVVFVPIGVASLIASRKVVEIVHRYESSC--LK 84
           S+FTQQELPACKPILTP+ VI  FL+  VVF+P+GV  L AS+ V+EIV RY++ C  L 
Sbjct: 17  SRFTQQELPACKPILTPKWVILTFLVSGVVFIPLGVICLFASQGVIEIVDRYDTDCIPLS 76

Query: 85  GVDNKIAYIQSSADKTCKITLKVDKHMKSPIYVYYQLDNFYQNHRRYVKSR 135
             DNK+ YIQ   DK C  T+ V K MK+P+YVYYQL+N+YQNHRRYVKSR
Sbjct: 77  SRDNKVRYIQGLEDKRCNRTITVTKTMKNPVYVYYQLENYYQNHRRYVKSR 127


>AT5G46150.1 | Symbols:  | LEM3 (ligand-effect modulator 3) family
           protein / CDC50 family protein | chr5:18708735-18710424
           REVERSE LENGTH=343
          Length = 343

 Score =  132 bits (331), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 83/111 (74%), Gaps = 3/111 (2%)

Query: 28  KFTQQELPACKPILTPRAVISAFLLVSVVFVPIGVASLIASRKVVEIVHRYESSCLKGV- 86
           +F QQ+LPACKP+LTP +VI+ F+L+  VF+PIG+ +L ASR  +EI+ RY+  C+    
Sbjct: 28  QFKQQKLPACKPVLTPISVITVFMLMGFVFIPIGLITLRASRDAIEIIDRYDVECIPEEY 87

Query: 87  -DNKIAYI-QSSADKTCKITLKVDKHMKSPIYVYYQLDNFYQNHRRYVKSR 135
             NK+ YI  SS  K C   LKV K+MK+PI++YYQLDN+YQNHRRYVKSR
Sbjct: 88  RTNKLLYITDSSIPKNCTRYLKVQKYMKAPIFIYYQLDNYYQNHRRYVKSR 138


>AT5G46150.2 | Symbols:  | LEM3 (ligand-effect modulator 3) family
           protein / CDC50 family protein | chr5:18708735-18710424
           REVERSE LENGTH=343
          Length = 343

 Score =  132 bits (331), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 83/111 (74%), Gaps = 3/111 (2%)

Query: 28  KFTQQELPACKPILTPRAVISAFLLVSVVFVPIGVASLIASRKVVEIVHRYESSCLKGV- 86
           +F QQ+LPACKP+LTP +VI+ F+L+  VF+PIG+ +L ASR  +EI+ RY+  C+    
Sbjct: 28  QFKQQKLPACKPVLTPISVITVFMLMGFVFIPIGLITLRASRDAIEIIDRYDVECIPEEY 87

Query: 87  -DNKIAYI-QSSADKTCKITLKVDKHMKSPIYVYYQLDNFYQNHRRYVKSR 135
             NK+ YI  SS  K C   LKV K+MK+PI++YYQLDN+YQNHRRYVKSR
Sbjct: 88  RTNKLLYITDSSIPKNCTRYLKVQKYMKAPIFIYYQLDNYYQNHRRYVKSR 138


>AT1G79450.2 | Symbols: ALIS5 | ALA-interacting subunit 5 |
           chr1:29888665-29889904 FORWARD LENGTH=283
          Length = 283

 Score = 91.7 bits (226), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/68 (63%), Positives = 51/68 (75%), Gaps = 2/68 (2%)

Query: 70  KVVEIVHRYESSCL--KGVDNKIAYIQSSADKTCKITLKVDKHMKSPIYVYYQLDNFYQN 127
           KVVEIV RY++ C+     +N +AYIQ   DK CK T+ V K MK P+YVYYQL+NFYQN
Sbjct: 7   KVVEIVDRYDTDCIPTSSRNNMVAYIQGEGDKICKRTITVTKAMKHPVYVYYQLENFYQN 66

Query: 128 HRRYVKSR 135
           HRRYVKSR
Sbjct: 67  HRRYVKSR 74