Miyakogusa Predicted Gene

Lj0g3v0250599.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0250599.1 tr|B9HBK0|B9HBK0_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_560743 PE=4 SV=1,64.79,7e-17,GB
DEF: T22K18.10 PROTEIN (TAF12) (PUTATIVE TBP-ASSOCIATED 58 KDA SUBUNIT
PROTEIN),NULL; FAMILY NOT ,CUFF.16407.1
         (72 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G10070.1 | Symbols: TAF12, TAFII58 | TBP-associated factor 12...    50   4e-07

>AT3G10070.1 | Symbols: TAF12, TAFII58 | TBP-associated factor 12 |
           chr3:3104195-3106798 REVERSE LENGTH=539
          Length = 539

 Score = 49.7 bits (117), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/64 (42%), Positives = 37/64 (57%)

Query: 4   PGFGGDEIKSYKRPVQSEIHKERLAAIKKSLLAAEAAHXXXXXXXXXXXXXXXXXXPPLN 63
           PGF  DE K++++P+ ++IHKERLAAIKKS+ A EAA+                   P N
Sbjct: 471 PGFSSDEFKTFRKPLTTDIHKERLAAIKKSVTATEAANARNQFGHGTANARGGQAKTPSN 530

Query: 64  IIGS 67
            +GS
Sbjct: 531 PMGS 534