Miyakogusa Predicted Gene

Lj0g3v0250469.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0250469.2 tr|B9GQI3|B9GQI3_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_756265 PE=4
SV=1,37.84,3e-17,seg,NULL; SNARE_assoc,SNARE associated Golgi
protein,CUFF.16395.2
         (376 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G13150.1 | Symbols:  | unknown protein; Has 83 Blast hits to ...   369   e-102

>AT4G13150.1 | Symbols:  | unknown protein; Has 83 Blast hits to 82
           proteins in 37 species: Archae - 0; Bacteria - 51;
           Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other
           Eukaryotes - 2 (source: NCBI BLink). |
           chr4:7650326-7652237 REVERSE LENGTH=347
          Length = 347

 Score =  369 bits (947), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/337 (59%), Positives = 236/337 (70%), Gaps = 14/337 (4%)

Query: 42  ANENVVVAHVSQLF-GS-RIRCFKQEGAENFEAVKPKNIPEP--DSQDSFVNEVQIKGKG 97
           +  N+VV + S++F GS  + C++ +   +   +   N  E   DS+D   NE ++ GKG
Sbjct: 17  SKPNLVVFNGSRVFYGSFSLTCYRIKVRSSQIGIVGDNDSEKSRDSKDEDENE-RVSGKG 75

Query: 98  GHNKTEISFLAMIAIALGIAVIATLASIGNKPILGSTFRPQILAEXXXXXXXXXXXXXXX 157
                 + F+  + + LG+A+I T+ S+  K   GS        E               
Sbjct: 76  ------VPFIVKLGLGLGLAMIITVISVALK---GSGGGGSPFEEVKSLAKVSSSSEGFT 126

Query: 158 XXXXXYSVILPEYAPGWVYFWLLMAAGCGLFISEEALNIWVGISIARLLSLDGTWQSLAE 217
                   ++P  APGWVYFWLLMAAGCGLFISEEALNIWVGI++AR+L+LDGTWQS AE
Sbjct: 127 FNAFGNRFMIPGNAPGWVYFWLLMAAGCGLFISEEALNIWVGITLARMLTLDGTWQSFAE 186

Query: 218 SFSRNASYIISTVLWVYWGVCISDLIPFYLGKLFRQSGVSGDVSSKLGVGKEKALEITNV 277
           SFSRNA YI+STV WVYWGVC+SD+IPFY+GKLFRQSG S DV SKLG+GKEKAL IT  
Sbjct: 187 SFSRNAPYIVSTVSWVYWGVCLSDMIPFYIGKLFRQSGASDDVCSKLGIGKEKALSITQA 246

Query: 278 VQKYGNLVGFVERFSLGVRNPTAFLAGALGISPNYFFAGVCCGSLFTLPIQLGIGFLLRE 337
           VQKYGNL GFVERFS+G+RNPTAF AGALGISP  FFAGVCCG L TLP+QL IGFLLRE
Sbjct: 247 VQKYGNLSGFVERFSVGMRNPTAFFAGALGISPECFFAGVCCGGLITLPLQLVIGFLLRE 306

Query: 338 RPMFALATVATVVGFWTIFPYAVAASTALFFYLRRRY 374
           RPMFALA VAT VG WTIFPY VAASTALF Y+R RY
Sbjct: 307 RPMFALAAVATAVGIWTIFPYVVAASTALFLYIRSRY 343