Miyakogusa Predicted Gene

Lj0g3v0249789.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0249789.1 Non Chatacterized Hit- tr|F6GVX5|F6GVX5_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,53.42,0.000000000000002,seg,NULL,CUFF.16336.1
         (111 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G19770.1 | Symbols: ATVPS9A, VPS9A, VPS9 | Vacuolar sorting p...   144   9e-36
AT5G09320.1 | Symbols: VPS9B | Vacuolar sorting protein 9 (VPS9)...   108   7e-25

>AT3G19770.1 | Symbols: ATVPS9A, VPS9A, VPS9 | Vacuolar sorting
          protein 9 (VPS9) domain | chr3:6866916-6869114 FORWARD
          LENGTH=520
          Length = 520

 Score =  144 bits (364), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 64/80 (80%), Positives = 74/80 (92%)

Query: 1  MENADVFLGLHDFLERMRQPAAADFVKAIKSFIVSFSNNAPDPDRDSAAVQEFLANMEAA 60
          MEN DVFLGLHDFLERMR+P+A DFVK+IKSFIVSFSNNAPDP++D A VQEF + MEAA
Sbjct: 1  MENTDVFLGLHDFLERMRKPSAGDFVKSIKSFIVSFSNNAPDPEKDCAMVQEFFSKMEAA 60

Query: 61 FKAHPLWAGCSEEELESAGE 80
          F+AHPLW+GCSEEEL+SAG+
Sbjct: 61 FRAHPLWSGCSEEELDSAGD 80


>AT5G09320.1 | Symbols: VPS9B | Vacuolar sorting protein 9 (VPS9)
          domain | chr5:2889007-2892016 REVERSE LENGTH=712
          Length = 712

 Score =  108 bits (270), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 48/80 (60%), Positives = 64/80 (80%), Gaps = 3/80 (3%)

Query: 1  MENADVFLGLHDFLERMRQPAAADFVKAIKSFIVSFSNNAPDPDRDSAAVQEFLANMEAA 60
          MEN DV  GLH+FL +   P+A DF+K+IKSFIVS  N APDP++D  AVQ+F   ME+A
Sbjct: 1  MENTDVVSGLHNFLSK---PSAKDFIKSIKSFIVSILNTAPDPEKDCDAVQDFFYKMESA 57

Query: 61 FKAHPLWAGCSEEELESAGE 80
          F+AHPLW+GCS++EL++AG+
Sbjct: 58 FRAHPLWSGCSDDELDNAGD 77