Miyakogusa Predicted Gene

Lj0g3v0249499.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0249499.1 Non Chatacterized Hit- tr|B9RRG2|B9RRG2_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,42.71,0.0000000008,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,NODE_63287_length_1309_cov_65.424751.path2.1
         (305 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G39450.1 | Symbols:  | F-box family protein | chr5:15786045-1...   271   4e-73
AT5G39480.1 | Symbols:  | F-box family protein | chr5:15801635-1...   219   2e-57
AT5G39460.1 | Symbols:  | F-box family protein | chr5:15788289-1...   216   1e-56
AT5G39490.1 | Symbols:  | F-box family protein | chr5:15805808-1...   213   1e-55

>AT5G39450.1 | Symbols:  | F-box family protein |
           chr5:15786045-15787877 FORWARD LENGTH=579
          Length = 579

 Score =  271 bits (693), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 142/265 (53%), Positives = 181/265 (68%), Gaps = 12/265 (4%)

Query: 29  KKKSLRGYVWNSFKQILGRSNSSKGSHLVSKKLTSSSEIRHARLQEFLRPSNIIRLSLNA 88
           ++KS   Y  +  K ILGRS+SS          +S SE R   LQ+FL   + I LSL A
Sbjct: 319 QRKSFSRYFRSGIKHILGRSSSS------KNMSSSRSETRPLNLQKFLNFGDSIGLSLKA 372

Query: 89  STVKLSSYRAWPNMHDSRFALYKLPLRVARADQEFAGLWGGTFGWPPGKPSEDKPGKALF 148
           S +KLSSY+ WPNM ++R+ALYKLP++   A+ E+AGLWGGTFGWPPGK +EDKPGKA F
Sbjct: 373 SNIKLSSYQGWPNMDETRYALYKLPIKDPIANDEYAGLWGGTFGWPPGKCTEDKPGKAFF 432

Query: 149 FLLLSYEEFQG--QQLLIGTKILEGTHYVLHPNGSAMFIVNINDPSSEPFPWDTDADSYP 206
            L+LSYEE Q   ++LLIGTKILEGTHY +HPNGSAMF++ I+ PS E FP+DT+ + + 
Sbjct: 433 LLMLSYEESQDGTERLLIGTKILEGTHYGMHPNGSAMFVIKIDSPSFEGFPFDTNGEDF- 491

Query: 207 VNIEHSFVGEGIASGYGFRYPGSKPGSLFVFQNGVIAFTWKESRAVXXXXXXXXXXXXKK 266
              EHS+ GEG A GYGFRYPG KPG+LFV   G++ F WK ++AV            +K
Sbjct: 492 ---EHSYAGEGTAKGYGFRYPGYKPGTLFVTSKGLLMFIWKATKAVLTLQRLNLGELLRK 548

Query: 267 GERIPSLPPVANFSYLTKSYSNVFA 291
           G  +  LPP  NF+YL K ++NVFA
Sbjct: 549 GVCVSPLPPCLNFAYLIKCHTNVFA 573


>AT5G39480.1 | Symbols:  | F-box family protein |
           chr5:15801635-15803341 REVERSE LENGTH=568
          Length = 568

 Score =  219 bits (558), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 118/259 (45%), Positives = 158/259 (61%), Gaps = 14/259 (5%)

Query: 44  ILGRSNSSKGSHLVSKKLTSSSEIRHARLQEFLRPSNIIRLSLNASTVKLSSYRAWPNMH 103
           +LG S+SSK +        S SEIR +  Q FL   +   L L AS  ++S Y+ WP MH
Sbjct: 317 VLGESSSSKNTT------PSQSEIRVSNRQSFLSSGDTFGLGLTASYSEMSYYKGWPYMH 370

Query: 104 DSRFALYKLPLRVARADQEFAGLWGGTFGWPPGKPSEDKPGKALFFLLLSYEEFQ--GQQ 161
              F LYKLP++ A   + +AGLWGGT G P GK  + K  K+L+ L+L+YEE +   ++
Sbjct: 371 FHHFLLYKLPVKKAVDQEAYAGLWGGTIGCPAGKCPKGKTEKSLYLLMLTYEESEEHSER 430

Query: 162 LLIGTKILEGTHYVLHPNGSAMFIVNINDPSSEPFPWDTDADSYPVNIEHSFVGEGIASG 221
           +LIGTKILEG  YV HPNG+AMF+V I+ PS +PFP D +   +    E+S+ GEGIA G
Sbjct: 431 VLIGTKILEGKRYVRHPNGTAMFVVKIDTPSLDPFPVDANETHF----ENSYSGEGIAEG 486

Query: 222 YGFRYPGSKPGSLFVFQNGVIAFTWKESRAVXXXXXXXXXXXXKK--GERIPSLPPVANF 279
           Y FRY GSKPGSLFV  N ++AF WKE++ V            KK  G  +P LPP  NF
Sbjct: 487 YSFRYTGSKPGSLFVITNDLLAFVWKETKVVITLQRLNLTEILKKGLGSCVPPLPPSKNF 546

Query: 280 SYLTKSYSNVFAGFPSSSN 298
           +Y+ +S+ N F    + S+
Sbjct: 547 TYMRRSFINEFTKLSTDSS 565


>AT5G39460.1 | Symbols:  | F-box family protein |
           chr5:15788289-15790004 REVERSE LENGTH=571
          Length = 571

 Score =  216 bits (551), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 131/294 (44%), Positives = 172/294 (58%), Gaps = 20/294 (6%)

Query: 3   DIRPSLDG-SSAVPNSLPEEDGLTQCIKKKSLRGYVWNSFKQILGRSNSSKGSHLVSKKL 61
           DI+  L+     + N    ED +    +KKS R ++ +  K ILG+ +SS          
Sbjct: 283 DIKKLLENLGDDIDNMEDIEDQIEVTPRKKSFRRFLRSGIKHILGKFSSS------KINS 336

Query: 62  TSSSEIRHARLQEFLRPSNIIRLSLNASTVKLSSYRAWPNMHDSRFALYKLPLRVARADQ 121
            SSSE R +  Q FL   N   LSL AS   +SSY  WP M    F+L+KLP++      
Sbjct: 337 PSSSETRRSNRQSFLSSGNTFCLSLKASCTLMSSYEGWPIMSADNFSLHKLPMKKPLDHD 396

Query: 122 EFAGLWGGTFGWPPGKPSEDKPGKALFFLLLSYEEFQ--GQQLLIGTKILEGTHYVLHPN 179
            +AGLWGGTFGWPPGK  ED   ++L  L+L+Y E +   +++L GTKIL  +++  HPN
Sbjct: 397 VYAGLWGGTFGWPPGKDIED---ESLLLLMLTYGESEEGSERILFGTKIL--SYFAEHPN 451

Query: 180 GSAMFIVNINDPSSEPFPWDTDADSYPVNIEHSFVGEGIASGYGFRYPGSKPGSLFVFQN 239
           GS+MF+VNI+ PS EPFP+DTD   +    EHS+ GEGIA GYGFRYPGSKPGSLFV  N
Sbjct: 452 GSSMFVVNIDTPSLEPFPFDTDGRDF----EHSYTGEGIADGYGFRYPGSKPGSLFVSSN 507

Query: 240 GVIAFTWKESRAVXXXXXXXXXXXXKK--GERIPSLPPVANFSYLTKSYSNVFA 291
            ++AF W+ +  V            KK  G  +  L P  NF+Y  +SYSNVFA
Sbjct: 508 DLLAFVWQGTEDVITLQRINLGEILKKSLGSCVSPLLPTKNFTYTKRSYSNVFA 561


>AT5G39490.1 | Symbols:  | F-box family protein |
           chr5:15805808-15807508 REVERSE LENGTH=566
          Length = 566

 Score =  213 bits (542), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 113/260 (43%), Positives = 157/260 (60%), Gaps = 13/260 (5%)

Query: 44  ILGRSNSSKGSHLVSKKLTSSSEIRHARLQEFLRPSNIIRLSLNASTVKLSSYRAWPNMH 103
           +L +S+SSK +        S SEIRH+  + FL   +   L L AS  ++S Y+ WP+M+
Sbjct: 317 VLRKSSSSKNTT------PSQSEIRHSNRKSFLSSGDTFGLGLKASYTEMSYYKGWPDMY 370

Query: 104 DSRFALYKLPLRVARADQEFAGLWGGTFGWPPGKPSEDKPGKALFFLLLSYEEFQGQQLL 163
              F LYKLP++ A   + +AGLWGGTFGWP GK  + K  K+L+ L+L+YE+   +++L
Sbjct: 371 VHHFLLYKLPVKKAVDHETYAGLWGGTFGWPAGKCPKGKTEKSLYLLMLTYEKEYSERVL 430

Query: 164 IGTKILEGTHYVLHPNGSAMFIVNINDPSSEPFPWDTDADSYPVNIEHSFVGEGIASGYG 223
           IGTKILEG   V  PNG+ MF+V I+ PS EPFP D D     ++ E+S+ G+G+  GYG
Sbjct: 431 IGTKILEGNRLVSRPNGTTMFVVKIDTPSLEPFPVDADE----IHFENSYSGKGVTDGYG 486

Query: 224 FRYPGSKPGSLFVFQNGVIAFTWKESRAVXXXXXXXXXXXXKK--GERIPSLPPVANFSY 281
           FRY GSKPGSLFV  N  +AF WK+++ +            KK  G  +P   P+ NF+Y
Sbjct: 487 FRYLGSKPGSLFVITNDFLAFVWKDTKTMITLHRLNLTEILKKGLGSCVPPSHPMKNFTY 546

Query: 282 LTKSYSNVFAGFPSSSNCYS 301
           +  S  N F    S+  CYS
Sbjct: 547 MRTSSMNEFTS-SSTDLCYS 565