Miyakogusa Predicted Gene
- Lj0g3v0249129.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0249129.1 tr|Q9LEU5|Q9LEU5_ARATH Cylicin-related protein
OS=Arabidopsis thaliana GN=T30N20_220 PE=2
SV=1,53.85,3e-19,Tudor/PWWP/MBT,NULL; no description,NULL;
LBR_tudor,Lamin-B receptor of TUDOR domain; ANDROGEN
INDUC,NODE_25720_length_605_cov_193.783478.path2.1
(112 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G10950.1 | Symbols: | Tudor/PWWP/MBT superfamily protein | c... 100 3e-22
AT4G31880.1 | Symbols: | LOCATED IN: cytosol, chloroplast; EXPR... 94 2e-20
AT4G31880.2 | Symbols: | LOCATED IN: cytosol; EXPRESSED IN: 24 ... 94 2e-20
AT1G15940.1 | Symbols: | Tudor/PWWP/MBT superfamily protein | c... 91 2e-19
AT1G80810.2 | Symbols: | Tudor/PWWP/MBT superfamily protein | c... 86 7e-18
AT1G80810.1 | Symbols: | Tudor/PWWP/MBT superfamily protein | c... 86 7e-18
AT5G47690.1 | Symbols: | binding | chr5:19317899-19327014 FORWA... 80 2e-16
AT5G47690.3 | Symbols: | binding | chr5:19317899-19327014 FORWA... 80 2e-16
AT5G47690.2 | Symbols: | binding | chr5:19317899-19327014 FORWA... 80 2e-16
AT4G32970.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 70 3e-13
AT4G02070.2 | Symbols: MSH6 | MUTS homolog 6 | chr4:906079-91293... 57 3e-09
AT4G02070.1 | Symbols: MSH6, MSH6-1, ATMSH6 | MUTS homolog 6 | c... 57 4e-09
AT1G77600.3 | Symbols: | ARM repeat superfamily protein | chr1:... 55 1e-08
AT1G77600.2 | Symbols: | ARM repeat superfamily protein | chr1:... 55 1e-08
AT1G77600.1 | Symbols: | ARM repeat superfamily protein | chr1:... 55 1e-08
AT4G32620.2 | Symbols: | Enhancer of polycomb-like transcriptio... 52 6e-08
AT4G32620.1 | Symbols: | Enhancer of polycomb-like transcriptio... 52 6e-08
AT1G05830.2 | Symbols: ATX2 | trithorax-like protein 2 | chr1:17... 49 9e-07
AT1G05830.1 | Symbols: ATX2, SDG30 | trithorax-like protein 2 | ... 49 9e-07
>AT5G10950.1 | Symbols: | Tudor/PWWP/MBT superfamily protein |
chr5:3459557-3461632 REVERSE LENGTH=395
Length = 395
Score = 99.8 bits (247), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 66/78 (84%)
Query: 30 RTPGKEKESDTKKYGENLVGLRVKVWWPEDREFYTGVVNSFDSARKKHKVLYDDGDEETL 89
R+ GK+K SD +KYGE LVG R++VWWP D +FY GVV+S+ S++KKH+V Y+DGD+ETL
Sbjct: 20 RSSGKDKVSDARKYGEALVGSRIRVWWPMDSKFYKGVVDSYVSSKKKHRVFYEDGDKETL 79
Query: 90 NLREEKWGVIKKADSDAD 107
+L++E+W +I++ D++++
Sbjct: 80 DLKKERWELIEEDDAESE 97
>AT4G31880.1 | Symbols: | LOCATED IN: cytosol, chloroplast;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14
growth stages; BEST Arabidopsis thaliana protein match
is: Tudor/PWWP/MBT superfamily protein
(TAIR:AT1G15940.1); Has 137162 Blast hits to 70781
proteins in 2973 species: Archae - 289; Bacteria -
24182; Metazoa - 56725; Fungi - 20130; Plants - 6559;
Viruses - 758; Other Eukaryotes - 28519 (source: NCBI
BLink). | chr4:15419435-15423939 REVERSE LENGTH=873
Length = 873
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 60/84 (71%), Gaps = 5/84 (5%)
Query: 16 ENTEEIPLTSAKRKRTPGKEKESDTKKYGENLVGLRVKVWWPEDREFYTGVVNSFDSARK 75
+ EE P ++ KRKR+ G+ K S GE+LVG R+KVWWP D+ +Y GVV S+D+A+K
Sbjct: 582 QTVEESPNSNTKRKRSLGQGKAS-----GESLVGSRIKVWWPMDQAYYKGVVESYDAAKK 636
Query: 76 KHKVLYDDGDEETLNLREEKWGVI 99
KH V+YDDGD+E L L+ +KW +
Sbjct: 637 KHLVIYDDGDQEILYLKNQKWSPL 660
>AT4G31880.2 | Symbols: | LOCATED IN: cytosol; EXPRESSED IN: 24
plant structures; EXPRESSED DURING: 14 growth stages;
BEST Arabidopsis thaliana protein match is:
Tudor/PWWP/MBT superfamily protein (TAIR:AT1G15940.1). |
chr4:15419435-15423939 REVERSE LENGTH=872
Length = 872
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 60/84 (71%), Gaps = 5/84 (5%)
Query: 16 ENTEEIPLTSAKRKRTPGKEKESDTKKYGENLVGLRVKVWWPEDREFYTGVVNSFDSARK 75
+ EE P ++ KRKR+ G+ K S GE+LVG R+KVWWP D+ +Y GVV S+D+A+K
Sbjct: 581 QTVEESPNSNTKRKRSLGQGKAS-----GESLVGSRIKVWWPMDQAYYKGVVESYDAAKK 635
Query: 76 KHKVLYDDGDEETLNLREEKWGVI 99
KH V+YDDGD+E L L+ +KW +
Sbjct: 636 KHLVIYDDGDQEILYLKNQKWSPL 659
>AT1G15940.1 | Symbols: | Tudor/PWWP/MBT superfamily protein |
chr1:5473672-5478050 FORWARD LENGTH=990
Length = 990
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 63/93 (67%), Gaps = 2/93 (2%)
Query: 7 RSGTKSTKSENTEEIPLTSAKRKRTPGKEKESDTKKYGENLVGLRVKVWWPEDREFYTGV 66
R+ T +TK +E+ P + K KR G+E ES+T + GE LVG RV VWWP D++FY GV
Sbjct: 533 RATTPATK--KSEQAPKSHPKMKRIAGEEVESNTNELGEELVGKRVNVWWPLDKKFYEGV 590
Query: 67 VNSFDSARKKHKVLYDDGDEETLNLREEKWGVI 99
+ S+ +K H+V Y DGD E LNL++E++ +I
Sbjct: 591 IKSYCRVKKMHQVTYSDGDVEELNLKKERFKII 623
>AT1G80810.2 | Symbols: | Tudor/PWWP/MBT superfamily protein |
chr1:30365575-30368898 FORWARD LENGTH=774
Length = 774
Score = 85.5 bits (210), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 64/99 (64%), Gaps = 4/99 (4%)
Query: 9 GTKSTKSENTEEIPLTSAKRKRTPGKEKESDTKKYGENLVGLRVKVWWPEDREFYTGVVN 68
+ +E+ EE P + R+RT KE + +GE+LVG RV +WWP D+ FY GV++
Sbjct: 470 AARQLANESEEETPKSHPTRRRTVRKEV---SDGFGEDLVGKRVNIWWPLDKTFYEGVID 526
Query: 69 SFDSARKKHKVLYDDGDEETLNLREEKWGVIKKADSDAD 107
S+ + +K H+V+Y DGD E LNL EE+W +++ D+ AD
Sbjct: 527 SYCTRKKMHRVIYSDGDSEELNLTEERWELLED-DTSAD 564
>AT1G80810.1 | Symbols: | Tudor/PWWP/MBT superfamily protein |
chr1:30365575-30368898 FORWARD LENGTH=773
Length = 773
Score = 85.5 bits (210), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 64/99 (64%), Gaps = 4/99 (4%)
Query: 9 GTKSTKSENTEEIPLTSAKRKRTPGKEKESDTKKYGENLVGLRVKVWWPEDREFYTGVVN 68
+ +E+ EE P + R+RT KE + +GE+LVG RV +WWP D+ FY GV++
Sbjct: 470 AARQLANESEEETPKSHPTRRRTVRKEV---SDGFGEDLVGKRVNIWWPLDKTFYEGVID 526
Query: 69 SFDSARKKHKVLYDDGDEETLNLREEKWGVIKKADSDAD 107
S+ + +K H+V+Y DGD E LNL EE+W +++ D+ AD
Sbjct: 527 SYCTRKKMHRVIYSDGDSEELNLTEERWELLED-DTSAD 564
>AT5G47690.1 | Symbols: | binding | chr5:19317899-19327014 FORWARD
LENGTH=1605
Length = 1605
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Query: 27 KRKRTPGKEKES--DTKKYGENLVGLRVKVWWPEDREFYTGVVNSFDSARKKHKVLYDDG 84
KRK G K S + K + L+G R++VWWP D+ FY G V S+DS +++H +LY+DG
Sbjct: 1345 KRKNVSGLAKCSTKENKLVNDELIGCRIEVWWPMDKRFYEGTVKSYDSTKQRHVILYEDG 1404
Query: 85 DEETLNLREEKWGVI 99
D E LNL++E+W +I
Sbjct: 1405 DVEVLNLKKEQWELI 1419
>AT5G47690.3 | Symbols: | binding | chr5:19317899-19327014 FORWARD
LENGTH=1607
Length = 1607
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Query: 27 KRKRTPGKEKES--DTKKYGENLVGLRVKVWWPEDREFYTGVVNSFDSARKKHKVLYDDG 84
KRK G K S + K + L+G R++VWWP D+ FY G V S+DS +++H +LY+DG
Sbjct: 1346 KRKNVSGLAKCSTKENKLVNDELIGCRIEVWWPMDKRFYEGTVKSYDSTKQRHVILYEDG 1405
Query: 85 DEETLNLREEKWGVI 99
D E LNL++E+W +I
Sbjct: 1406 DVEVLNLKKEQWELI 1420
>AT5G47690.2 | Symbols: | binding | chr5:19317899-19327014 FORWARD
LENGTH=1606
Length = 1606
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Query: 27 KRKRTPGKEKES--DTKKYGENLVGLRVKVWWPEDREFYTGVVNSFDSARKKHKVLYDDG 84
KRK G K S + K + L+G R++VWWP D+ FY G V S+DS +++H +LY+DG
Sbjct: 1346 KRKNVSGLAKCSTKENKLVNDELIGCRIEVWWPMDKRFYEGTVKSYDSTKQRHVILYEDG 1405
Query: 85 DEETLNLREEKWGVI 99
D E LNL++E+W +I
Sbjct: 1406 DVEVLNLKKEQWELI 1420
>AT4G32970.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G32960.1); Has 552 Blast hits to 489 proteins
in 85 species: Archae - 4; Bacteria - 14; Metazoa - 187;
Fungi - 12; Plants - 225; Viruses - 0; Other Eukaryotes
- 110 (source: NCBI BLink). | chr4:15910671-15914300
REVERSE LENGTH=638
Length = 638
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 2 TVYSPRSGTKSTKS--ENTEEIPLTSAKRKRTPGKEKESDTKKYGENLVGLRVKVWWPED 59
V +S + STK + E+ P T+ KR + GKEK SD KKY E +VG RVK+WWP D
Sbjct: 238 AVSCDKSASDSTKGAKQPLEKKPKTNTKRIHSLGKEKTSDFKKYDEKIVGSRVKIWWPLD 297
Query: 60 REFYTGVVNSFDSARKKHK 78
R +Y VV S+ SA+++H+
Sbjct: 298 RAYYEAVVISYCSAKERHR 316
>AT4G02070.2 | Symbols: MSH6 | MUTS homolog 6 | chr4:906079-912930
FORWARD LENGTH=1321
Length = 1321
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 22 PLTSAKRKRTPGKEKESDTKKYGENLVGLRVKVWWPEDREFYTGVVNSFDSARKKHKVLY 81
PL + +P +S YG+ +VG +V+V+WP D+++Y G V +D KH V Y
Sbjct: 102 PLLVIGQTPSP---PQSVVITYGDEVVGKQVRVYWPLDKKWYDGSVTFYDKGEGKHVVEY 158
Query: 82 DDGDEETLNLREEK 95
+DG+EE+L+L +EK
Sbjct: 159 EDGEEESLDLGKEK 172
>AT4G02070.1 | Symbols: MSH6, MSH6-1, ATMSH6 | MUTS homolog 6 |
chr4:906079-912930 FORWARD LENGTH=1324
Length = 1324
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 22 PLTSAKRKRTPGKEKESDTKKYGENLVGLRVKVWWPEDREFYTGVVNSFDSARKKHKVLY 81
PL + +P +S YG+ +VG +V+V+WP D+++Y G V +D KH V Y
Sbjct: 102 PLLVIGQTPSP---PQSVVITYGDEVVGKQVRVYWPLDKKWYDGSVTFYDKGEGKHVVEY 158
Query: 82 DDGDEETLNLREEK 95
+DG+EE+L+L +EK
Sbjct: 159 EDGEEESLDLGKEK 172
>AT1G77600.3 | Symbols: | ARM repeat superfamily protein |
chr1:29152890-29162156 REVERSE LENGTH=1424
Length = 1424
Score = 55.1 bits (131), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 20/97 (20%)
Query: 20 EIPLTSAKRKRTPGKE-------------KES-------DTKKYGENLVGLRVKVWWPED 59
EIP+ +R T KE K S D +GE ++G R+K+ P D
Sbjct: 1224 EIPIKKLERHTTCAKESVKASVSNKITSSKHSGVVSALKDISNHGEAIIGQRIKLLSPTD 1283
Query: 60 REFYTGVVNSFDSARKKHKVLYDDGDEETLNLREEKW 96
FY G V F+S HK+++D+GD E + L E W
Sbjct: 1284 GCFYPGTVEKFNSKSNSHKIIFDNGDVELVCLDSESW 1320
>AT1G77600.2 | Symbols: | ARM repeat superfamily protein |
chr1:29152890-29162156 REVERSE LENGTH=1410
Length = 1410
Score = 54.7 bits (130), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 39 DTKKYGENLVGLRVKVWWPEDREFYTGVVNSFDSARKKHKVLYDDGDEETLNLREEKW 96
D +GE ++G R+K+ P D FY G V F+S HK+++D+GD E + L E W
Sbjct: 1249 DISNHGEAIIGQRIKLLSPTDGCFYPGTVEKFNSKSNSHKIIFDNGDVELVCLDSESW 1306
>AT1G77600.1 | Symbols: | ARM repeat superfamily protein |
chr1:29152890-29162156 REVERSE LENGTH=1367
Length = 1367
Score = 54.7 bits (130), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 39 DTKKYGENLVGLRVKVWWPEDREFYTGVVNSFDSARKKHKVLYDDGDEETLNLREEKW 96
D +GE ++G R+K+ P D FY G V F+S HK+++D+GD E + L E W
Sbjct: 1213 DISNHGEAIIGQRIKLLSPTDGCFYPGTVEKFNSKSNSHKIIFDNGDVELVCLDSESW 1270
>AT4G32620.2 | Symbols: | Enhancer of polycomb-like transcription
factor protein | chr4:15731968-15737222 FORWARD
LENGTH=1540
Length = 1540
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 35/53 (66%)
Query: 47 LVGLRVKVWWPEDREFYTGVVNSFDSARKKHKVLYDDGDEETLNLREEKWGVI 99
L+ ++KV+WP D +Y G V+ FD + H V YDD DEE +NL+ E++ ++
Sbjct: 355 LLNKKIKVFWPLDERWYHGFVDGFDGDKNLHHVKYDDRDEEWINLQGERFKIL 407
>AT4G32620.1 | Symbols: | Enhancer of polycomb-like transcription
factor protein | chr4:15731968-15737222 FORWARD
LENGTH=1539
Length = 1539
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 35/53 (66%)
Query: 47 LVGLRVKVWWPEDREFYTGVVNSFDSARKKHKVLYDDGDEETLNLREEKWGVI 99
L+ ++KV+WP D +Y G V+ FD + H V YDD DEE +NL+ E++ ++
Sbjct: 355 LLNKKIKVFWPLDERWYHGFVDGFDGDKNLHHVKYDDRDEEWINLQGERFKIL 407
>AT1G05830.2 | Symbols: ATX2 | trithorax-like protein 2 |
chr1:1754452-1761225 FORWARD LENGTH=1083
Length = 1083
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 46 NLVGLRVKVWWPEDREFYTGVVNSFDSARKKHKVLYDDGDEETLNLREEK 95
+ +GL+ KV+WP D +Y G + ++ K H V Y DGD E L LR EK
Sbjct: 219 HFIGLQCKVFWPLDAVWYPGSIVGYNVETKHHIVKYGDGDGEELALRREK 268
>AT1G05830.1 | Symbols: ATX2, SDG30 | trithorax-like protein 2 |
chr1:1754452-1761225 FORWARD LENGTH=1083
Length = 1083
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 46 NLVGLRVKVWWPEDREFYTGVVNSFDSARKKHKVLYDDGDEETLNLREEK 95
+ +GL+ KV+WP D +Y G + ++ K H V Y DGD E L LR EK
Sbjct: 219 HFIGLQCKVFWPLDAVWYPGSIVGYNVETKHHIVKYGDGDGEELALRREK 268