Miyakogusa Predicted Gene

Lj0g3v0249079.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0249079.1 tr|G7I4G2|G7I4G2_MEDTR FAR1-related protein
OS=Medicago truncatula GN=MTR_1g019850 PE=4 SV=1,68.49,3e-17,FAR1,FAR1
DNA binding domain,CUFF.17567.1
         (255 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G38180.1 | Symbols: FRS5 | FAR1-related sequence 5 | chr4:179...    59   4e-09

>AT4G38180.1 | Symbols: FRS5 | FAR1-related sequence 5 |
           chr4:17906702-17909404 REVERSE LENGTH=788
          Length = 788

 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 61/113 (53%), Gaps = 7/113 (6%)

Query: 2   KKVRKRCSTSRTDCKASLVVSKARKRHNWAIVSFNNDHNHIMVSPKSVKYLRCHKEGMSV 61
           +++++  + +R  CKASL V K +    W +  F  DHNH +V P  V  LR H++ +S 
Sbjct: 137 REIKRPRTITRVGCKASLSV-KMQDSGKWLVSGFVKDHNHELVPPDQVHCLRSHRQ-ISG 194

Query: 62  AAKNLVEKFHQDGLPTGKV--ATMFNNGSSS---FSKRDCWNHLRNVRSRKLE 109
            AK L++     G+   ++  A +   G  S   F++ DC N++RN R + +E
Sbjct: 195 PAKTLIDTLQAAGMGPRRIMSALIKEYGGISKVGFTEVDCRNYMRNNRQKSIE 247