Miyakogusa Predicted Gene

Lj0g3v0249019.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0249019.1 tr|I0IG00|I0IG00_PHYMF HIT family protein
OS=Phycisphaera mikurensis (strain NBRC 102666 / KCTC
2251,36.21,6e-17,SUBFAMILY NOT NAMED,NULL; HISTIDINE TRIAD (HIT)
PROTEIN,Histidine triad (HIT) protein; HISTRIAD,Hist,CUFF.16270.1
         (136 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G48545.1 | Symbols: HINT3 | histidine triad nucleotide-bindin...   182   5e-47
AT5G58240.1 | Symbols: FHIT | FRAGILE HISTIDINE TRIAD | chr5:235...    53   5e-08
AT5G58240.2 | Symbols: FHIT | FRAGILE HISTIDINE TRIAD | chr5:235...    53   5e-08

>AT5G48545.1 | Symbols: HINT3 | histidine triad nucleotide-binding 3
           | chr5:19676228-19677945 FORWARD LENGTH=197
          Length = 197

 Score =  182 bits (462), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 89/117 (76%), Positives = 100/117 (85%), Gaps = 1/117 (0%)

Query: 1   MCLCILDTNPLSHGHSLIIPKSHFPSLDATPPSVVAAMCSKVPFISNAIMKATGCNSFNL 60
           MCLCILDTNPLSHGHSLIIPK H+P+L+ TPPSVVAAMCSKVP ISNAI+KATG +SFNL
Sbjct: 70  MCLCILDTNPLSHGHSLIIPKLHYPTLEETPPSVVAAMCSKVPLISNAIVKATGSDSFNL 129

Query: 61  LINNGAAAGQVIYHTHIHIIPRKAFDCLWASESLLRRPLNLDDDKVSQLAARIQEQL 117
           L+NNGAAAGQVI+HTHIHIIPRK  DCLWASESL R  L LD +  SQL + ++  L
Sbjct: 130 LVNNGAAAGQVIFHTHIHIIPRKERDCLWASESLRRHSLKLDKE-ASQLVSCVRRHL 185


>AT5G58240.1 | Symbols: FHIT | FRAGILE HISTIDINE TRIAD |
           chr5:23558349-23559313 REVERSE LENGTH=180
          Length = 180

 Score = 53.1 bits (126), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 9/117 (7%)

Query: 1   MCLCILDTNPLSHGHSLIIPKSHFPSLDATPPSVVAAMCSKVPFISNAIMKATGCNSFNL 60
           +   +++  PL   H L+ P+   P          + +      + + +      +S  L
Sbjct: 46  LSYAMVNLRPLLPAHVLVCPRRLVPRFTDLTADETSDLWLTAQKVGSKLETFHNASSLTL 105

Query: 61  LINNGAAAGQVIYHTHIHIIPRKA---------FDCLWASESLLRRPLNLDDDKVSQ 108
            I +G  AGQ + H HIHI+PRK          +D L   E  L++ L+LD D+V +
Sbjct: 106 AIQDGPQAGQTVPHVHIHILPRKGGDFEKNDEIYDALDEKEKELKQKLDLDKDRVDR 162


>AT5G58240.2 | Symbols: FHIT | FRAGILE HISTIDINE TRIAD |
           chr5:23558349-23559171 REVERSE LENGTH=160
          Length = 160

 Score = 53.1 bits (126), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 9/117 (7%)

Query: 1   MCLCILDTNPLSHGHSLIIPKSHFPSLDATPPSVVAAMCSKVPFISNAIMKATGCNSFNL 60
           +   +++  PL   H L+ P+   P          + +      + + +      +S  L
Sbjct: 26  LSYAMVNLRPLLPAHVLVCPRRLVPRFTDLTADETSDLWLTAQKVGSKLETFHNASSLTL 85

Query: 61  LINNGAAAGQVIYHTHIHIIPRKA---------FDCLWASESLLRRPLNLDDDKVSQ 108
            I +G  AGQ + H HIHI+PRK          +D L   E  L++ L+LD D+V +
Sbjct: 86  AIQDGPQAGQTVPHVHIHILPRKGGDFEKNDEIYDALDEKEKELKQKLDLDKDRVDR 142