Miyakogusa Predicted Gene

Lj0g3v0248929.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0248929.1 Non Chatacterized Hit- tr|B9RSM2|B9RSM2_RICCO
Ubiquitin-protein ligase, putative OS=Ricinus communis,34.71,2e-16,
,CUFF.16262.1
         (126 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G38690.1 | Symbols:  | Zinc-finger domain of monoamine-oxidas...    69   9e-13
AT1G67780.1 | Symbols:  | Zinc-finger domain of monoamine-oxidas...    63   4e-11
AT1G67270.1 | Symbols:  | Zinc-finger domain of monoamine-oxidas...    60   4e-10

>AT5G38690.1 | Symbols:  | Zinc-finger domain of monoamine-oxidase A
           repressor R1 protein | chr5:15479424-15482992 REVERSE
           LENGTH=572
          Length = 572

 Score = 68.6 bits (166), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 69/122 (56%), Gaps = 2/122 (1%)

Query: 1   MEEGEVETILRELVRKQNLRSGENTLAVEFQTRLLTLLRTASGHESPSLTTIDGNCSWLN 60
           + +G+ E ++RE++  ++ R  + +   +   +LLT++    G  S  L+  D   SW  
Sbjct: 292 LRKGQAECVIREMLSGRSKRRQQYSTLTQMIIQLLTVILEDRGETSVCLSATDP--SWFT 349

Query: 61  ALGDLTLQSPLVLKDFPVEMLNEGLSGYCHLSLCDKLRLLTFICDEVLSSEKVRSHIEKE 120
            +G+   +S + L DFP EM  +G+S Y  L+   +L+LL F+CDE L +  +R+ I+ +
Sbjct: 350 TIGECLSESEVKLDDFPPEMFEKGISQYEKLNSSKRLKLLNFLCDETLGTLVMRNCIDSQ 409

Query: 121 NL 122
           N+
Sbjct: 410 NI 411


>AT1G67780.1 | Symbols:  | Zinc-finger domain of monoamine-oxidase A
           repressor R1 protein | chr1:25412816-25415530 FORWARD
           LENGTH=512
          Length = 512

 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 70/122 (57%), Gaps = 5/122 (4%)

Query: 1   MEEGEVETILRELVR-KQNLRSGENTLAVEFQTRLLTLLRTASGHESPSLTTIDGNCSWL 59
           ++EG+ ET++REL    +N R  +    ++   +LL L+ +     S SL+  D   +W 
Sbjct: 235 LKEGQAETVVRELFSCGRNTRRQQYCSIIQLMIQLLDLI-SKDREMSLSLSVSD---NWF 290

Query: 60  NALGDLTLQSPLVLKDFPVEMLNEGLSGYCHLSLCDKLRLLTFICDEVLSSEKVRSHIEK 119
            ALG++ LQS ++  +FP E    G++ Y  +    +L+LL F+CDE LS+  +R+ I+ 
Sbjct: 291 TALGEILLQSEVLSDEFPPETFETGVAEYEKMDASRRLKLLNFVCDESLSTWAMRNCIKS 350

Query: 120 EN 121
           ++
Sbjct: 351 QS 352


>AT1G67270.1 | Symbols:  | Zinc-finger domain of monoamine-oxidase A
           repressor R1 protein | chr1:25183177-25185793 REVERSE
           LENGTH=541
          Length = 541

 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 67/118 (56%), Gaps = 4/118 (3%)

Query: 1   MEEGEVETILREL-VRKQNLRSGENTLAVEFQTRLLTLLRTASGHESPSLTTIDGNCSWL 59
           ++EG  ETI+REL +  +N R  +     +   +LL L+ +     S SL+  D   SW 
Sbjct: 238 LKEGHAETIVRELFICGRNTRRQQYCSITQMMIQLLDLI-SKDREMSLSLSATDS--SWF 294

Query: 60  NALGDLTLQSPLVLKDFPVEMLNEGLSGYCHLSLCDKLRLLTFICDEVLSSEKVRSHI 117
            A+G++  +S ++  + P+E    G++ Y  ++   KL+LL F+CDE LS+  +R++I
Sbjct: 295 TAIGEILSKSEVLSDELPLETFVGGVAAYEKMNASRKLKLLNFLCDESLSTWAMRNYI 352