Miyakogusa Predicted Gene

Lj0g3v0248159.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0248159.1 Non Chatacterized Hit- tr|B8BNV9|B8BNV9_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,40.87,0.00000000000001,seg,NULL; FAMILY NOT
NAMED,NULL,CUFF.16226.1
         (239 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G30280.1 | Symbols: RDM4, DMS4 | RNA-directed DNA methylation...   202   1e-52

>AT2G30280.1 | Symbols: RDM4, DMS4 | RNA-directed DNA methylation 4
           | chr2:12909804-12911860 REVERSE LENGTH=346
          Length = 346

 Score =  202 bits (514), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 115/227 (50%), Positives = 157/227 (69%), Gaps = 22/227 (9%)

Query: 26  QSPLDAFWLEINERPLKRSLLDFGNLSISDSAQKV-----EFNNKKVFVQRVETISSSEV 80
           QS LDAFWLEINERPLKR  LDF  LSISDS ++      +   KKV V+ +ET++ SE 
Sbjct: 28  QSLLDAFWLEINERPLKRPTLDFSKLSISDSGERGPSVAEDVKPKKVLVRHLETVTDSET 87

Query: 81  TLDIVQSFVDPGSSRASESKSNIEQRKSFFKKDNRARKQDQLLSKAKQDKESLAKDARFE 140
           T DI+ SF +   +  S SK   E+RK  FKKDNR   ++Q L+K+ Q ++  +++ARFE
Sbjct: 88  TADIIHSFFESDHNEKSCSKGKFEERKIAFKKDNR---KEQRLTKSVQKQQIASENARFE 144

Query: 141 QIWKSRKGNKETEHEKALQEICNFYDIVRVEEQQKE------MTLEDQILLSSYLPMLRE 194
           QIW+SRKGNKE  HEK     C+F+D++RV+ +++        +LEDQ +L+S+LP+LRE
Sbjct: 145 QIWRSRKGNKEGIHEK-----CHFFDVIRVDTEERRDNAQEFTSLEDQKMLASFLPLLRE 199

Query: 195 FIPDAASEIEADMVAHSKKEDYVYDLYTVNDEVDV-EDSSYS-YPLV 239
            IP AA EIEAD+ + S  E+YVYD Y VN+E+D+ EDSS + +PLV
Sbjct: 200 CIPTAAEEIEADIQS-SHTEEYVYDYYAVNEEMDISEDSSKNQFPLV 245