Miyakogusa Predicted Gene

Lj0g3v0247339.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0247339.1 Non Chatacterized Hit- tr|I1KJT4|I1KJT4_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.53330
PE,77.78,3e-19,seg,NULL; DUF1070,Arabinogalactan peptide,
AGP,NODE_28316_length_525_cov_213.746674.path1.1
         (63 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G61640.1 | Symbols: AGP20, AtAGP20 | arabinogalactan protein ...    53   5e-08
AT2G46330.1 | Symbols: AGP16, ATAGP16 | arabinogalactan protein ...    50   4e-07
AT5G53250.1 | Symbols: AGP22, ATAGP22 | arabinogalactan protein ...    49   8e-07

>AT3G61640.1 | Symbols: AGP20, AtAGP20 | arabinogalactan protein
          20 | chr3:22810283-22810629 REVERSE LENGTH=74
          Length = 74

 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%)

Query: 5  RVQLFVMSILALAIAFVIPSINAQVPAPAPAPTSDGITVDQGVAYVXXXXXXXXTYIIH 63
          R  + V+++ A   A + P   AQ  APAP+PTSDG ++DQG+AY+        TY+IH
Sbjct: 4  RNSVAVIALFAFVFAVISPFAGAQSLAPAPSPTSDGTSIDQGIAYLLMVVALVLTYLIH 62


>AT2G46330.1 | Symbols: AGP16, ATAGP16 | arabinogalactan protein
          16 | chr2:19018730-19019108 REVERSE LENGTH=73
          Length = 73

 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 32/52 (61%)

Query: 12 SILALAIAFVIPSINAQVPAPAPAPTSDGITVDQGVAYVXXXXXXXXTYIIH 63
          ++ +   A ++    AQ  APAPAPTSDG ++DQG+AY+        TY+IH
Sbjct: 11 ALFSFVFAVILSLAGAQSLAPAPAPTSDGTSIDQGIAYLLMVVALVLTYLIH 62


>AT5G53250.1 | Symbols: AGP22, ATAGP22 | arabinogalactan protein
          22 | chr5:21603715-21604007 FORWARD LENGTH=63
          Length = 63

 Score = 48.9 bits (115), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 35/63 (55%)

Query: 1  MEVFRVQLFVMSILALAIAFVIPSINAQVPAPAPAPTSDGITVDQGVAYVXXXXXXXXTY 60
          M   +  L ++++  +    ++P   +   +PAPAPTSDG ++DQG+AYV        TY
Sbjct: 1  MASLKFPLEILAVFVIISVILLPIAQSHSSSPAPAPTSDGTSIDQGIAYVLMMVALALTY 60

Query: 61 IIH 63
           IH
Sbjct: 61 FIH 63