Miyakogusa Predicted Gene

Lj0g3v0247139.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0247139.1 tr|H1WHI8|H1WHI8_9CYAN ATP-dependent Clp protease
adapter protein ClpS OS=Arthrospira sp. PCC 8005
G,57.5,3e-19,ClpS-like,Ribosomal protein L7/L12, C-terminal/adaptor
protein ClpS-like; seg,NULL; ClpS,Adaptor
pro,NODE_56140_length_803_cov_50.184307.path1.1
         (156 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G68660.1 | Symbols:  | Ribosomal protein L12/ ATP-dependent C...   221   2e-58
AT1G68660.2 | Symbols:  | Ribosomal protein L12/ ATP-dependent C...   151   2e-37

>AT1G68660.1 | Symbols:  | Ribosomal protein L12/ ATP-dependent Clp
           protease adaptor protein ClpS family protein |
           chr1:25778058-25779083 REVERSE LENGTH=159
          Length = 159

 Score =  221 bits (562), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 108/159 (67%), Positives = 125/159 (78%), Gaps = 3/159 (1%)

Query: 1   MKSAICGRMGLSPNHVF--APGDKYSFCVGPCSNVCIPMXXXXXXXXXXXX-XXEKPVIE 57
           M++AICGR+ L+P+ +F    GDK+    GPC N  I M               +KP+IE
Sbjct: 1   METAICGRLALAPSSLFNSKSGDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPIIE 60

Query: 58  KVSPGRESEFDLKKSRKSSPPYRVILHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEA 117
           K +PGRESEFDL+KS+K +PPYRVILHNDNFNKREYVVQVLMKVIPGMT+DNAVNIMQEA
Sbjct: 61  KTTPGRESEFDLRKSKKIAPPYRVILHNDNFNKREYVVQVLMKVIPGMTVDNAVNIMQEA 120

Query: 118 HHNGLSVVIICAQADAEDHCMQLRGNGLLSSIEPAGGGC 156
           H NGL+VVI+CAQADAE HCMQLRGNGLLSS+EP GGGC
Sbjct: 121 HINGLAVVIVCAQADAEQHCMQLRGNGLLSSVEPDGGGC 159


>AT1G68660.2 | Symbols:  | Ribosomal protein L12/ ATP-dependent Clp
           protease adaptor protein ClpS family protein |
           chr1:25778058-25779083 REVERSE LENGTH=129
          Length = 129

 Score =  151 bits (382), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 82/159 (51%), Positives = 96/159 (60%), Gaps = 33/159 (20%)

Query: 1   MKSAICGRMGLSPNHVF--APGDKYSFCVGPCSNVCIPMXXXXXXXXXXXX-XXEKPVIE 57
           M++AICGR+ L+P+ +F    GDK+    GPC N  I M               +KP+IE
Sbjct: 1   METAICGRLALAPSSLFNSKSGDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPIIE 60

Query: 58  KVSPGRESEFDLKKSRKSSPPYRVILHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEA 117
           K +PGRESEFDL+KS+K +PPYRVILHNDNFNKREYVVQVLMK                 
Sbjct: 61  KTTPGRESEFDLRKSKKIAPPYRVILHNDNFNKREYVVQVLMK----------------- 103

Query: 118 HHNGLSVVIICAQADAEDHCMQLRGNGLLSSIEPAGGGC 156
                        ADAE HCMQLRGNGLLSS+EP GGGC
Sbjct: 104 -------------ADAEQHCMQLRGNGLLSSVEPDGGGC 129