Miyakogusa Predicted Gene

Lj0g3v0246539.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0246539.1 Non Chatacterized Hit- tr|D8TRD2|D8TRD2_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,40,7e-16,Pseudouridine synthase,Pseudouridine synthase, catalytic
domain; no description,Pseudouridine
syntha,NODE_50229_length_1121_cov_7.661909.path1.1
         (248 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G30320.1 | Symbols:  | Pseudouridine synthase family protein ...   215   2e-56
AT1G20370.1 | Symbols:  | Pseudouridine synthase family protein ...    69   2e-12
AT1G76120.1 | Symbols:  | Pseudouridine synthase family protein ...    59   3e-09
AT1G76120.2 | Symbols:  | Pseudouridine synthase family protein ...    49   4e-06

>AT2G30320.1 | Symbols:  | Pseudouridine synthase family protein |
           chr2:12925728-12927896 REVERSE LENGTH=510
          Length = 510

 Score =  215 bits (548), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 111/185 (60%), Positives = 138/185 (74%), Gaps = 3/185 (1%)

Query: 53  NSSLVVRARWLYEPDEADRLNVSHFRKISQCSCGKLQRLLGKDYVEIKIWGDSFMLHQIR 112
           NS +  RA+WLYEPDE D+++ +HFRK+ +C  GKL+  LG  +VEI IWG+SFMLHQIR
Sbjct: 300 NSQVYSRAKWLYEPDETDKISGAHFRKVFRCRSGKLENSLGFGFVEISIWGESFMLHQIR 359

Query: 113 KMVGTAVAVKRNLIPRDILSLSLIKFTRIVLPLAPPEVLILRGNTFSMRSSAGKFIRPEM 172
           KM+GTAVAVKR L+PRDI+ LSL KFTRIVLPLAP EVLILRGN+F +R       RP M
Sbjct: 360 KMIGTAVAVKRELLPRDIIRLSLNKFTRIVLPLAPSEVLILRGNSFEVRRLPE---RPGM 416

Query: 173 VSLVESEPILNEVEEFYTSVMLPELSKFLDSSKSPWVEWVERLDKYSSFADAELDEVRMA 232
            +  ESE +  E+EEFY +VM+P++S FLDS KSPW EWV+ LD+     D EL++VR  
Sbjct: 417 EATGESEEVEKEIEEFYRAVMVPQVSIFLDSEKSPWKEWVDHLDRNDGLIDEELEDVRKG 476

Query: 233 WRTWK 237
           W  WK
Sbjct: 477 WEEWK 481


>AT1G20370.1 | Symbols:  | Pseudouridine synthase family protein |
           chr1:7051846-7053588 REVERSE LENGTH=549
          Length = 549

 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/63 (50%), Positives = 42/63 (66%)

Query: 91  LLGKDYVEIKIWGDSFMLHQIRKMVGTAVAVKRNLIPRDILSLSLIKFTRIVLPLAPPEV 150
           L GKD+V+ ++ G SFMLHQIRKM+G AVA+ RN  P  ++  S  K  RI +P+AP   
Sbjct: 363 LDGKDFVKCEVVGQSFMLHQIRKMIGLAVAIMRNYAPESLIEASFKKDVRINVPMAPEVG 422

Query: 151 LIL 153
           L L
Sbjct: 423 LYL 425


>AT1G76120.1 | Symbols:  | Pseudouridine synthase family protein |
           chr1:28558813-28560294 REVERSE LENGTH=463
          Length = 463

 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 44/76 (57%)

Query: 78  RKISQCSCGKLQRLLGKDYVEIKIWGDSFMLHQIRKMVGTAVAVKRNLIPRDILSLSLIK 137
           R+I   +   +  L G D+++ ++ G SFMLHQIRKM+G AVA+ RN     ++  +  K
Sbjct: 297 RQIISFTANTVINLDGIDFIKCEVLGKSFMLHQIRKMMGLAVAIMRNCASESLIQSAFSK 356

Query: 138 FTRIVLPLAPPEVLIL 153
              I +P+AP   L L
Sbjct: 357 DVNITVPMAPEVGLYL 372


>AT1G76120.2 | Symbols:  | Pseudouridine synthase family protein |
           chr1:28559224-28560294 REVERSE LENGTH=356
          Length = 356

 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 36/60 (60%)

Query: 78  RKISQCSCGKLQRLLGKDYVEIKIWGDSFMLHQIRKMVGTAVAVKRNLIPRDILSLSLIK 137
           R+I   +   +  L G D+++ ++ G SFMLHQIRKM+G AVA+ RN     ++  +  K
Sbjct: 297 RQIISFTANTVINLDGIDFIKCEVLGKSFMLHQIRKMMGLAVAIMRNCASESLIQSAFSK 356