Miyakogusa Predicted Gene

Lj0g3v0246299.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0246299.1 Non Chatacterized Hit- tr|I1M710|I1M710_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.10202
PE,86.39,0,WD40,WD40 repeat; WD_REPEATS_2,WD40 repeat;
WD_REPEATS_REGION,WD40-repeat-containing domain; LISH,Li,CUFF.16091.1
         (303 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G08560.2 | Symbols:  | transducin family protein / WD-40 repe...   328   2e-90
AT5G08560.1 | Symbols:  | transducin family protein / WD-40 repe...   328   2e-90
AT5G43920.1 | Symbols:  | transducin family protein / WD-40 repe...   183   1e-46

>AT5G08560.2 | Symbols:  | transducin family protein / WD-40 repeat
           family protein | chr5:2771104-2773827 REVERSE LENGTH=589
          Length = 589

 Score =  328 bits (842), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 164/308 (53%), Positives = 210/308 (68%), Gaps = 13/308 (4%)

Query: 1   MGGVEDEEPALKRMKXXXX--XXXXXXXXXXXXXXXXXFLSDSMARPLPSHGDEQVVGSK 58
           MG VED EP LKR K                        L D MARPLPS GD++ +GSK
Sbjct: 1   MGVVEDTEPPLKRAKRLADEPNGFSANSSVRGSSVNSNSLGDLMARPLPSQGDDETIGSK 60

Query: 59  GVIKRDEFVRIIAKALYSLGYRKSGAHLEEESGIPLHSPGVNMFIQQILDGNWDDSIATL 118
           GVI++ EFVRII +ALYSLGY K+GA LEEESGI LH+  + +F+QQ+ DG WD S+ TL
Sbjct: 61  GVIRKSEFVRIITRALYSLGYDKTGAMLEEESGISLHNSTIKLFLQQVKDGKWDQSVKTL 120

Query: 119 HTVGLADESVVRSASFLILEQKFFELLHAEKVMEALKTLRTEISPLSVYSNRIRELSSCI 178
           H +G  DE  V++ASFL+LEQKF E L  EK+ +AL+TLR E++PL + + R+ EL+S +
Sbjct: 121 HRIGFPDEKAVKAASFLLLEQKFLEFLKVEKIADALRTLRNEMAPLRINTKRVHELASSL 180

Query: 179 VSPS---------PKQDILEVRSRSXXXXXXXXXXXXTVMIPEKRLEHLVEQALILQREA 229
           +SPS         P ++   V SRS            +V+IPEKRLE LVE +L +QR++
Sbjct: 181 ISPSSFISHTTSTPGKE--SVNSRSKVLEELQTLLPASVIIPEKRLECLVENSLHIQRDS 238

Query: 230 CLFHNSLDKEMSLYSDHHCGKDQIPSKTLQILEAHDDEVWLVQFSHNGKYLASASNDRTA 289
           C+FHN+LD ++SLYSDH CGK QIPS+T QILE+H DEVW +QFSHNGKYLAS+S D+TA
Sbjct: 239 CVFHNTLDSDLSLYSDHQCGKHQIPSQTAQILESHTDEVWFLQFSHNGKYLASSSKDQTA 298

Query: 290 IIWEVIFD 297
           IIWE+  D
Sbjct: 299 IIWEISAD 306


>AT5G08560.1 | Symbols:  | transducin family protein / WD-40 repeat
           family protein | chr5:2771104-2773827 REVERSE LENGTH=589
          Length = 589

 Score =  328 bits (842), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 164/308 (53%), Positives = 210/308 (68%), Gaps = 13/308 (4%)

Query: 1   MGGVEDEEPALKRMKXXXX--XXXXXXXXXXXXXXXXXFLSDSMARPLPSHGDEQVVGSK 58
           MG VED EP LKR K                        L D MARPLPS GD++ +GSK
Sbjct: 1   MGVVEDTEPPLKRAKRLADEPNGFSANSSVRGSSVNSNSLGDLMARPLPSQGDDETIGSK 60

Query: 59  GVIKRDEFVRIIAKALYSLGYRKSGAHLEEESGIPLHSPGVNMFIQQILDGNWDDSIATL 118
           GVI++ EFVRII +ALYSLGY K+GA LEEESGI LH+  + +F+QQ+ DG WD S+ TL
Sbjct: 61  GVIRKSEFVRIITRALYSLGYDKTGAMLEEESGISLHNSTIKLFLQQVKDGKWDQSVKTL 120

Query: 119 HTVGLADESVVRSASFLILEQKFFELLHAEKVMEALKTLRTEISPLSVYSNRIRELSSCI 178
           H +G  DE  V++ASFL+LEQKF E L  EK+ +AL+TLR E++PL + + R+ EL+S +
Sbjct: 121 HRIGFPDEKAVKAASFLLLEQKFLEFLKVEKIADALRTLRNEMAPLRINTKRVHELASSL 180

Query: 179 VSPS---------PKQDILEVRSRSXXXXXXXXXXXXTVMIPEKRLEHLVEQALILQREA 229
           +SPS         P ++   V SRS            +V+IPEKRLE LVE +L +QR++
Sbjct: 181 ISPSSFISHTTSTPGKE--SVNSRSKVLEELQTLLPASVIIPEKRLECLVENSLHIQRDS 238

Query: 230 CLFHNSLDKEMSLYSDHHCGKDQIPSKTLQILEAHDDEVWLVQFSHNGKYLASASNDRTA 289
           C+FHN+LD ++SLYSDH CGK QIPS+T QILE+H DEVW +QFSHNGKYLAS+S D+TA
Sbjct: 239 CVFHNTLDSDLSLYSDHQCGKHQIPSQTAQILESHTDEVWFLQFSHNGKYLASSSKDQTA 298

Query: 290 IIWEVIFD 297
           IIWE+  D
Sbjct: 299 IIWEISAD 306


>AT5G43920.1 | Symbols:  | transducin family protein / WD-40 repeat
           family protein | chr5:17673397-17675630 FORWARD
           LENGTH=523
          Length = 523

 Score =  183 bits (465), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 103/255 (40%), Positives = 152/255 (59%), Gaps = 7/255 (2%)

Query: 49  HGDEQVVGSKGVIKRDEFVRIIAKALYSLGYRKSGAHLEEESGIPLHSPGVNMFIQQILD 108
           +G  +V+GSKG++K+ EF+RI+ + LYSLG++ S + LE ES I   +       +Q+L 
Sbjct: 3   NGLWEVLGSKGLLKKHEFIRILVQCLYSLGFKNSASCLEFESKILYKTADSEFLEKQVLS 62

Query: 109 GNWDDSIATLHTV-GLADESVVRSASFLILEQKFFELLHAEKVMEALKTLRTEISPLSVY 167
           GNWD  +  L  +   + +    +A +L+ +Q   E L    V  AL  LR +   L + 
Sbjct: 63  GNWDSCVQVLDRIFDNSMDDTRNTALYLVFKQCLLEYLKRGDVSLALNVLRKQAPLLRMG 122

Query: 168 SNRIRELSSCIVSPSPKQ-----DILEVRSRSXXXXXXXXXXXXTVMIPEKRLEHLVEQA 222
             +I  L+  IV     +     + L +  R              ++IPE+RLEHLVE A
Sbjct: 123 KEKIHRLACDIVYSKEMESGEVDNCLVLDLRRKLLVELEKLIPLPIVIPERRLEHLVETA 182

Query: 223 LILQREACLFHNSLDKEMSLYSDHHCGKDQIPSKTLQILEAHDDEVWLVQFSHNGKYLAS 282
           ++ Q + C++HNS D  +SLY DH CG+DQIPS+T+QIL AH +EVW VQFS++GKYLA+
Sbjct: 183 VMDQIDTCMYHNSCDA-VSLYKDHCCGRDQIPSETVQILVAHKNEVWFVQFSNSGKYLAT 241

Query: 283 ASNDRTAIIWEVIFD 297
           AS+D TAIIW+V+ D
Sbjct: 242 ASSDCTAIIWKVLDD 256