Miyakogusa Predicted Gene

Lj0g3v0245739.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0245739.1 tr|G7K3G7|G7K3G7_MEDTR DNA polymerase OS=Medicago
truncatula GN=MTR_5g092100 PE=3 SV=1,86.21,0,DNA polymerase A
domain,DNA-directed DNA polymerase, family A, palm domain; DNAPOLI,DNA
polymerase A,CUFF.16062.1
         (174 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G20540.2 | Symbols: POLGAMMA1 | polymerase gamma 1 | chr3:716...   266   8e-72
AT3G20540.1 | Symbols: POLGAMMA1 | polymerase gamma 1 | chr3:716...   265   9e-72
AT1G50840.1 | Symbols: POLGAMMA2 | polymerase gamma 2 | chr1:188...   265   2e-71
AT4G32700.2 | Symbols:  | helicases;ATP-dependent helicases;nucl...    51   3e-07

>AT3G20540.2 | Symbols: POLGAMMA1 | polymerase gamma 1 |
            chr3:7168261-7173357 FORWARD LENGTH=1049
          Length = 1049

 Score =  266 bits (679), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 131/174 (75%), Positives = 149/174 (85%), Gaps = 2/174 (1%)

Query: 1    MLNFSIAYGKTPIGLSKDWKVPVKDAKKTRDLWYNDRKEVLKWQEERKREACEYHCVYTL 60
            MLNFSIAYGKT IGLS+DWKV  ++A+ T +LWYNDR+EV KWQE RK+EA +   V TL
Sbjct: 878  MLNFSIAYGKTAIGLSRDWKVSREEAQDTVNLWYNDRQEVRKWQELRKKEAIQKGYVLTL 937

Query: 61   LGRARRFPSVDLATNYQKGHIERAAINTPVQGSAADVAMCAMLQIANHKQLKELGWKLLL 120
            LGRAR+FP  +  +  QK HIERAAINTPVQGSAADVAMCAML+I+N+++LKELGWKLLL
Sbjct: 938  LGRARKFP--EYRSRAQKNHIERAAINTPVQGSAADVAMCAMLEISNNQRLKELGWKLLL 995

Query: 121  QVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILKVALSVDAKIAQNWYAGK 174
            QVHDEVILEGP+ESAE AK IVV CMS+PFNGKNIL V LSVDAK AQNWYAGK
Sbjct: 996  QVHDEVILEGPSESAENAKDIVVNCMSEPFNGKNILSVDLSVDAKCAQNWYAGK 1049


>AT3G20540.1 | Symbols: POLGAMMA1 | polymerase gamma 1 |
            chr3:7168261-7173357 FORWARD LENGTH=1034
          Length = 1034

 Score =  265 bits (678), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 131/174 (75%), Positives = 149/174 (85%), Gaps = 2/174 (1%)

Query: 1    MLNFSIAYGKTPIGLSKDWKVPVKDAKKTRDLWYNDRKEVLKWQEERKREACEYHCVYTL 60
            MLNFSIAYGKT IGLS+DWKV  ++A+ T +LWYNDR+EV KWQE RK+EA +   V TL
Sbjct: 863  MLNFSIAYGKTAIGLSRDWKVSREEAQDTVNLWYNDRQEVRKWQELRKKEAIQKGYVLTL 922

Query: 61   LGRARRFPSVDLATNYQKGHIERAAINTPVQGSAADVAMCAMLQIANHKQLKELGWKLLL 120
            LGRAR+FP  +  +  QK HIERAAINTPVQGSAADVAMCAML+I+N+++LKELGWKLLL
Sbjct: 923  LGRARKFP--EYRSRAQKNHIERAAINTPVQGSAADVAMCAMLEISNNQRLKELGWKLLL 980

Query: 121  QVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILKVALSVDAKIAQNWYAGK 174
            QVHDEVILEGP+ESAE AK IVV CMS+PFNGKNIL V LSVDAK AQNWYAGK
Sbjct: 981  QVHDEVILEGPSESAENAKDIVVNCMSEPFNGKNILSVDLSVDAKCAQNWYAGK 1034


>AT1G50840.1 | Symbols: POLGAMMA2 | polymerase gamma 2 |
            chr1:18839277-18844313 FORWARD LENGTH=1050
          Length = 1050

 Score =  265 bits (676), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 127/174 (72%), Positives = 149/174 (85%), Gaps = 2/174 (1%)

Query: 1    MLNFSIAYGKTPIGLSKDWKVPVKDAKKTRDLWYNDRKEVLKWQEERKREACEYHCVYTL 60
            MLNFSIAYGKT +GLS+DWKV  K+A++T DLWYNDR+EV KWQE RK+EA E   V TL
Sbjct: 879  MLNFSIAYGKTAVGLSRDWKVSTKEAQETVDLWYNDRQEVRKWQEMRKKEAIEDGYVLTL 938

Query: 61   LGRARRFPSVDLATNYQKGHIERAAINTPVQGSAADVAMCAMLQIANHKQLKELGWKLLL 120
            LGR+RRFP+    +  Q+ HI+RAAINTPVQGSAADVAMCAML+I+ ++QLK+LGW+LLL
Sbjct: 939  LGRSRRFPAS--KSRAQRNHIQRAAINTPVQGSAADVAMCAMLEISINQQLKKLGWRLLL 996

Query: 121  QVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILKVALSVDAKIAQNWYAGK 174
            Q+HDEVILEGP ESAE+AK IVV+CMSKPFNG+NIL V LSVDAK AQNWYA K
Sbjct: 997  QIHDEVILEGPIESAEIAKDIVVDCMSKPFNGRNILSVDLSVDAKCAQNWYAAK 1050


>AT4G32700.2 | Symbols:  | helicases;ATP-dependent helicases;nucleic
            acid binding;ATP binding;DNA-directed DNA polymerases;DNA
            binding | chr4:15767440-15779185 FORWARD LENGTH=2154
          Length = 2154

 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 75/186 (40%), Gaps = 21/186 (11%)

Query: 2    LNFSIAYGKTPIGLSKDWKVPVKDAKKTRDLWYNDRKEVLKWQEERKREACEYHCVYTLL 61
            L + I YG     L++  +    +AK+    + +    V  W  E      E   + TL 
Sbjct: 1964 LIYGILYGMGANRLAEQLECTSDEAKEKIRSFKSSFPAVTSWLNETISFCQEKGYIQTLK 2023

Query: 62   GRARRFPSVDLATNYQKGHIERAAINTPVQGSAADVAMCAMLQI---------------- 105
            GR R    +      +K   +R A+N+  QGSAAD+   AM+ I                
Sbjct: 2024 GRRRFLSKIKFGNAKEKSKAQRQAVNSMCQGSAADIIKIAMINIYSAIAEDVDTAASSSS 2083

Query: 106  -ANHKQLKELGWKLLLQVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILKVALSVDA 164
                  + +   ++LLQVHDE++LE      ++A  ++   M    +    L V L V  
Sbjct: 2084 SETRFHMLKGRCRILLQVHDELVLEVDPSYVKLAAMLLQTSMENAVS----LLVPLHVKL 2139

Query: 165  KIAQNW 170
            K+ + W
Sbjct: 2140 KVGKTW 2145