Miyakogusa Predicted Gene

Lj0g3v0245729.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0245729.1 Non Chatacterized Hit- tr|I1IST8|I1IST8_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,28.88,5e-18,FAMILY NOT NAMED,NULL; coiled-coil,NULL,CUFF.16065.1
         (420 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G27060.1 | Symbols: TOR1, SPR2, CN | ARM repeat superfamily p...   446   e-125
AT1G50890.1 | Symbols:  | ARM repeat superfamily protein | chr1:...   360   1e-99
AT1G27210.1 | Symbols:  | ARM repeat superfamily protein | chr1:...    62   6e-10
AT5G62580.1 | Symbols:  | ARM repeat superfamily protein | chr5:...    62   7e-10
AT1G59850.1 | Symbols:  | ARM repeat superfamily protein | chr1:...    53   4e-07
AT2G07170.1 | Symbols:  | ARM repeat superfamily protein | chr2:...    51   1e-06

>AT4G27060.1 | Symbols: TOR1, SPR2, CN | ARM repeat superfamily
           protein | chr4:13581581-13585070 REVERSE LENGTH=864
          Length = 864

 Score =  446 bits (1147), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 242/418 (57%), Positives = 295/418 (70%), Gaps = 37/418 (8%)

Query: 10  IENDQSSANLAGFSKTDGQSEVSFSNNRGNWVAIQRQLMQMERQQVHLMNMLQDFMGGSH 69
           +   ++  + A  S TD QSE SF++NRGNW AIQRQL+Q+ERQQ +LMNMLQ+F+GGSH
Sbjct: 477 VNGKETPGHHAPVSNTDNQSEGSFTSNRGNWSAIQRQLLQLERQQTNLMNMLQEFIGGSH 536

Query: 70  DSMVTLENRVRGLERIVEDMSRDLSISSGRRGNNFTGFEGSSSRPSSKYNGFNDYSSAKY 129
           DSMVTLE RVRGLERIVEDM+RDLSISSGRR N   GF         KYN F +Y + KY
Sbjct: 537 DSMVTLEGRVRGLERIVEDMARDLSISSGRRANLTAGF--------GKYNSFANYPTGKY 588

Query: 130 GRGGDGRIQFGERFAQSDGNALGMRGRGPSWRSDMSDGWDFSGYGASRNGQISSRRAFTG 189
               +GR   GER +Q+DG    MRGR   W SDM+D W    + ASRNGQ   RR    
Sbjct: 589 ----NGRAP-GERGSQTDG---AMRGR--MWNSDMADDWFIPPHAASRNGQAGPRR---- 634

Query: 190 SSADGRSPKSAHESDQ--GGSRRAWE-KAAMPIRLGEGPSARSVWQASKDEATLEAIRIA 246
                 SP+S    ++  G  RR W+ KA+  IR GEGPSARSVWQASKDEATLEAIR+A
Sbjct: 635 ------SPRSEQYENEHMGNGRRGWDNKASGTIRFGEGPSARSVWQASKDEATLEAIRVA 688

Query: 247 GEDNGTSRATRVAI-PEMTAEAM-TDDNVGKDREAIWTSWSNAMDALQAGDVDSAFAEVS 304
           GED    R TRVA+ PE  AEAM  DDN G++R+ IW SWSNAM +L+ GD+D+A+AEV 
Sbjct: 689 GEDGAVPRPTRVAVAPE--AEAMGDDDNEGQERDPIWVSWSNAMHSLRVGDIDAAYAEVL 746

Query: 305 STGDDLLLLKLMDRTGPVIDQLSNEVACEVLYTIGQFLLEPNLYGICLSWIQQLLEIVLE 364
             GD  L++KLMD+TGP +DQ+SNE+A E L  I QFLL+ +LY ICLSW QQLLE+VL+
Sbjct: 747 CAGDQHLVIKLMDKTGPSLDQMSNEIANEALNFISQFLLDHSLYDICLSWSQQLLELVLQ 806

Query: 365 NGPDTFGVSLEVKKDLLLNLHEAST--DTTEDWEGVPPHQLLLQLASAWEIDLQQHDK 420
           +G DTFGV +E+K ++L NL +A +  D  EDWEG  P QL++QLAS WEIDLQQ DK
Sbjct: 807 DGADTFGVPMELKTEILYNLQDACSTMDPPEDWEGPAPEQLVVQLASVWEIDLQQFDK 864


>AT1G50890.1 | Symbols:  | ARM repeat superfamily protein |
           chr1:18862295-18865752 REVERSE LENGTH=821
          Length = 821

 Score =  360 bits (923), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 213/393 (54%), Positives = 261/393 (66%), Gaps = 73/393 (18%)

Query: 34  SNNRGNWVAIQRQLMQMERQQVHLMNMLQDFMGGSHDSMVTLENRVRGLERIVEDMSRDL 93
           S NRGNW  +QRQL+ +ERQQ H+MNMLQDFMGGSHD M++LENRVRGLERIVE+MSR++
Sbjct: 494 SENRGNWPPLQRQLLHLERQQTHIMNMLQDFMGGSHDGMISLENRVRGLERIVEEMSREM 553

Query: 94  SISSGRRGNNFTGFEGSSSRPSSKYNGFNDYSSAKYGRGGDGRIQFGERFAQSDGNALGM 153
           S                                          IQ G R     G A   
Sbjct: 554 S------------------------------------------IQSGAR-----GKATA- 565

Query: 154 RGRGPSWRSDMSDGWDFSGYG-ASRNGQISSRRAFTGSSADGRSPKSAHESDQGGSRRAW 212
                SWRSD+ DGWD   YG +SRN Q S+R+        G S +S      G SRRAW
Sbjct: 566 -----SWRSDV-DGWDSPNYGPSSRNTQTSTRKI----RGTGPSEQS------GNSRRAW 609

Query: 213 EKAAMPIRLGEGPSARSVWQASKDEATLEAIRIAGEDNGTSRATRVAIPEMTAEAMTDDN 272
           +K+++ IRLGEGPSARSVWQASKDEATLEAIR+AGED GTSR  RV+IPE  AEAM D++
Sbjct: 610 DKSSVAIRLGEGPSARSVWQASKDEATLEAIRVAGEDCGTSRNRRVSIPE--AEAMMDED 667

Query: 273 V----GKDREAIWTSWSNAMDALQAGDVDSAFAEVSSTGDDLLLLKLMDRTGPVIDQLSN 328
                G+  + IWT WSN++ AL+ GD DSAFAEV STGDD LL+KLMD+TGPV+DQLS+
Sbjct: 668 DDNRGGQQGDPIWTCWSNSVHALRVGDTDSAFAEVLSTGDDHLLVKLMDKTGPVLDQLSS 727

Query: 329 EVACEVLYTIGQFLLEPNLYGICLSWIQQLLEIVLENGPDTFGVSLEVKKDLLLNLHEA- 387
           ++  E +++I QFLL+  LY ICLSWIQQLLE+ +ENG D  G+ LE+KK+LLLNLHEA 
Sbjct: 728 DMGNEAIHSIAQFLLDHTLYDICLSWIQQLLEVSVENGADFMGIPLELKKELLLNLHEAL 787

Query: 388 -STDTTEDWEGVPPHQLLLQLASAWEIDLQQHD 419
            +TD  EDWEG+ P  LL++LAS W I++Q  D
Sbjct: 788 STTDPPEDWEGLAPDHLLVELASNWNIEIQHFD 820


>AT1G27210.1 | Symbols:  | ARM repeat superfamily protein |
           chr1:9455669-9457917 REVERSE LENGTH=625
          Length = 625

 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 57/94 (60%), Gaps = 4/94 (4%)

Query: 43  IQRQLMQMERQQVHLMNMLQDFMGGSHDSMVTLENRVRGLERIVEDMSRDLSISSGRRGN 102
           I+ QL  +E QQ  L+++LQ FMG S   + +LE+RV GLE  ++++S DL++S+GR   
Sbjct: 477 IREQLALIENQQSSLLDLLQKFMGTSQSGIQSLESRVSGLEMALDEISCDLAVSNGRVPR 536

Query: 103 NFTGFEGSSSRPSSKYNGFNDYSSAKYGRGGDGR 136
           N +G  G S    SK  G  ++ S K+ R  + R
Sbjct: 537 NSSGCAGDS---CSKLPG-TEFLSPKFWRKTEER 566


>AT5G62580.1 | Symbols:  | ARM repeat superfamily protein |
           chr5:25120010-25122259 FORWARD LENGTH=615
          Length = 615

 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 44/60 (73%)

Query: 43  IQRQLMQMERQQVHLMNMLQDFMGGSHDSMVTLENRVRGLERIVEDMSRDLSISSGRRGN 102
           I+ QL+Q+E+QQ +LM++LQ F+G S   M  LE RV GLE  ++++S DL++S+GR  N
Sbjct: 458 IRNQLVQIEQQQANLMDLLQRFVGSSQHGMRGLETRVHGLELALDEISYDLAVSNGRMSN 517


>AT1G59850.1 | Symbols:  | ARM repeat superfamily protein |
           chr1:22028509-22030207 REVERSE LENGTH=498
          Length = 498

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 36/54 (66%)

Query: 43  IQRQLMQMERQQVHLMNMLQDFMGGSHDSMVTLENRVRGLERIVEDMSRDLSIS 96
           I+ Q+ Q+E+QQ  L+++ Q FM  SH+ M +LE RVRGLE     +S DL +S
Sbjct: 428 IRHQITQIEKQQSSLLDLFQKFMESSHNGMQSLERRVRGLETSFSVISTDLLVS 481


>AT2G07170.1 | Symbols:  | ARM repeat superfamily protein |
           chr2:2975565-2978692 FORWARD LENGTH=820
          Length = 820

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 64/117 (54%), Gaps = 1/117 (0%)

Query: 296 VDSAFAEVSSTGDDLLLLKLMDRTGPVIDQLSNEVACEVLYTIGQFLLEPNLYGICLSWI 355
           V+S + +V S+GD+L L++L+DRTGPV++ +S++   E+L  +  +LLE       L W+
Sbjct: 700 VESEYLQVLSSGDELALVELLDRTGPVLESMSSQTINEILSILLSYLLERRFMNSILPWL 759

Query: 356 QQLLEIVLENGPDTFGVSLEVKKDLLLNLHEAS-TDTTEDWEGVPPHQLLLQLASAW 411
            Q+ ++   NG +    S   +  +L  + EAS  D +   E     Q+ ++L   W
Sbjct: 760 HQVADLSTTNGANYLIPSARKRAQVLSAIQEASGMDFSNLAERRAVTQIAMKLRKLW 816