Miyakogusa Predicted Gene

Lj0g3v0244099.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0244099.1 Non Chatacterized Hit- tr|B8ACT4|B8ACT4_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,66.67,0.058,PROTEIN RER1,Retrieval of early ER protein Rer1;
seg,NULL; Rer1,Retrieval of early ER protein Rer1,CUFF.16071.1
         (194 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G39220.1 | Symbols: ATRER1A | Rer1 family protein | chr4:1826...   241   3e-64
AT2G21600.1 | Symbols: ATRER1B, RER1B | endoplasmatic reticulum ...   239   1e-63
AT2G18240.2 | Symbols:  | Rer1 family protein | chr2:7935466-793...   187   3e-48
AT2G18240.1 | Symbols:  | Rer1 family protein | chr2:7935466-793...   187   3e-48
AT2G23310.1 | Symbols: ATRER1C1 | Rer1 family protein | chr2:991...   180   6e-46
AT2G23310.2 | Symbols: ATRER1C1 | Rer1 family protein | chr2:991...   180   6e-46

>AT4G39220.1 | Symbols: ATRER1A | Rer1 family protein |
           chr4:18264280-18265531 FORWARD LENGTH=191
          Length = 191

 Score =  241 bits (614), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 118/174 (67%), Positives = 134/174 (77%), Gaps = 1/174 (0%)

Query: 1   MEGTGGXXXXXXXPVNQWWLEFSKMFQYYLDKSTPHTTYRWIGTVVIASIYVLRVFYVQG 60
           M+ +GG       PV Q   E  +++Q+YLDK+TPH  YRWIGT+V+A IY LRV+Y+QG
Sbjct: 1   MDESGGDSGSVATPVQQRAHEAWRIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQG 60

Query: 61  FYIVSXXXXXXXXXXXXXXXSPLVDPEVEH-SDGPLLPTKGSDEFKPFIRRLPEFKFWYS 119
           FYI++               SPLVDPE    SDGP LPT+GSDEFKPFIRRLPEFKFWYS
Sbjct: 61  FYIIAYGLGIYLLNLLIGFLSPLVDPEAGGVSDGPSLPTRGSDEFKPFIRRLPEFKFWYS 120

Query: 120 FTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPLN 173
            TKAFCIAF+MTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIP +
Sbjct: 121 MTKAFCIAFLMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFS 174


>AT2G21600.1 | Symbols: ATRER1B, RER1B | endoplasmatic reticulum
           retrieval protein 1B | chr2:9243550-9244579 FORWARD
           LENGTH=195
          Length = 195

 Score =  239 bits (609), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 116/174 (66%), Positives = 134/174 (77%)

Query: 1   MEGTGGXXXXXXXPVNQWWLEFSKMFQYYLDKSTPHTTYRWIGTVVIASIYVLRVFYVQG 60
           MEG+GG       PV +   E  +++QYYLDK+TPH+T RWIGT+V   IY LRV+ + G
Sbjct: 1   MEGSGGDSGSMATPVQKKVHEAWRVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSIHG 60

Query: 61  FYIVSXXXXXXXXXXXXXXXSPLVDPEVEHSDGPLLPTKGSDEFKPFIRRLPEFKFWYSF 120
           FYI+S               SPLVDPE+E SDG  LPT+GSDEFKPFIRRLPEFKFWYS 
Sbjct: 61  FYIISYGLGIYLLNLLIGFLSPLVDPELEVSDGATLPTRGSDEFKPFIRRLPEFKFWYSM 120

Query: 121 TKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPLNL 174
           TKAFCIAF+MTFFSVFDVPVFWPILLCYW+VLFVLTMRRQIAHMIK+KYIP ++
Sbjct: 121 TKAFCIAFLMTFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKHKYIPFSI 174


>AT2G18240.2 | Symbols:  | Rer1 family protein |
           chr2:7935466-7936464 FORWARD LENGTH=220
          Length = 220

 Score =  187 bits (476), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 89/161 (55%), Positives = 113/161 (70%)

Query: 14  PVNQWWLEFSKMFQYYLDKSTPHTTYRWIGTVVIASIYVLRVFYVQGFYIVSXXXXXXXX 73
           P+ +W +EFSK FQ YLD+S P+   RW+ T+V A IY+ RV+ V G++++S        
Sbjct: 18  PLAKWRIEFSKSFQNYLDRSAPNIVRRWLVTLVAAVIYIYRVYSVYGYFVISYGLATYIL 77

Query: 74  XXXXXXXSPLVDPEVEHSDGPLLPTKGSDEFKPFIRRLPEFKFWYSFTKAFCIAFVMTFF 133
                  SP VDPE+E  D   LP   SDE+KPF+RRLPEFKFWY+ TKAF +AFVMTFF
Sbjct: 78  NLLIGFLSPKVDPELEALDPDSLPVDESDEYKPFVRRLPEFKFWYAATKAFVVAFVMTFF 137

Query: 134 SVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPLNL 174
           S  DVPVFWPILLCYW+VL+ LTM+R I HM KY+Y P ++
Sbjct: 138 SFLDVPVFWPILLCYWLVLYSLTMKRLIVHMFKYRYFPFDV 178


>AT2G18240.1 | Symbols:  | Rer1 family protein |
           chr2:7935466-7936464 FORWARD LENGTH=221
          Length = 221

 Score =  187 bits (476), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 89/161 (55%), Positives = 113/161 (70%)

Query: 14  PVNQWWLEFSKMFQYYLDKSTPHTTYRWIGTVVIASIYVLRVFYVQGFYIVSXXXXXXXX 73
           P+ +W +EFSK FQ YLD+S P+   RW+ T+V A IY+ RV+ V G++++S        
Sbjct: 18  PLAKWRIEFSKSFQNYLDRSAPNIVRRWLVTLVAAVIYIYRVYSVYGYFVISYGLATYIL 77

Query: 74  XXXXXXXSPLVDPEVEHSDGPLLPTKGSDEFKPFIRRLPEFKFWYSFTKAFCIAFVMTFF 133
                  SP VDPE+E  D   LP   SDE+KPF+RRLPEFKFWY+ TKAF +AFVMTFF
Sbjct: 78  NLLIGFLSPKVDPELEALDPDSLPVDESDEYKPFVRRLPEFKFWYAATKAFVVAFVMTFF 137

Query: 134 SVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPLNL 174
           S  DVPVFWPILLCYW+VL+ LTM+R I HM KY+Y P ++
Sbjct: 138 SFLDVPVFWPILLCYWLVLYSLTMKRLIVHMFKYRYFPFDV 178


>AT2G23310.1 | Symbols: ATRER1C1 | Rer1 family protein |
           chr2:9917643-9918913 FORWARD LENGTH=212
          Length = 212

 Score =  180 bits (456), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 84/159 (52%), Positives = 110/159 (69%)

Query: 15  VNQWWLEFSKMFQYYLDKSTPHTTYRWIGTVVIASIYVLRVFYVQGFYIVSXXXXXXXXX 74
           VN+    FS+  Q+ LDK+ PH  YRWI  + +  IY++RV++V+GFYI++         
Sbjct: 37  VNRLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVEGFYIITYAIGIYLLN 96

Query: 75  XXXXXXSPLVDPEVEHSDGPLLPTKGSDEFKPFIRRLPEFKFWYSFTKAFCIAFVMTFFS 134
                 SP  DPE   + G  LPT+ SDE++PF+RRLPEFKFW S  +AF I F+MTFF 
Sbjct: 97  LIIAFLSPQEDPEASLTSGGSLPTRRSDEYRPFVRRLPEFKFWLSIIRAFIIGFMMTFFE 156

Query: 135 VFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPLN 173
           VFDVPVFWPILL YW++LF LTMR+QI HMIKY+Y+P +
Sbjct: 157 VFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFS 195


>AT2G23310.2 | Symbols: ATRER1C1 | Rer1 family protein |
           chr2:9917643-9918913 FORWARD LENGTH=211
          Length = 211

 Score =  180 bits (456), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 84/159 (52%), Positives = 110/159 (69%)

Query: 15  VNQWWLEFSKMFQYYLDKSTPHTTYRWIGTVVIASIYVLRVFYVQGFYIVSXXXXXXXXX 74
           VN+    FS+  Q+ LDK+ PH  YRWI  + +  IY++RV++V+GFYI++         
Sbjct: 37  VNRLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVEGFYIITYAIGIYLLN 96

Query: 75  XXXXXXSPLVDPEVEHSDGPLLPTKGSDEFKPFIRRLPEFKFWYSFTKAFCIAFVMTFFS 134
                 SP  DPE   + G  LPT+ SDE++PF+RRLPEFKFW S  +AF I F+MTFF 
Sbjct: 97  LIIAFLSPQEDPEASLTSGGSLPTRRSDEYRPFVRRLPEFKFWLSIIRAFIIGFMMTFFE 156

Query: 135 VFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPLN 173
           VFDVPVFWPILL YW++LF LTMR+QI HMIKY+Y+P +
Sbjct: 157 VFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFS 195