Miyakogusa Predicted Gene

Lj0g3v0244089.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0244089.1 Non Chatacterized Hit- tr|I3T222|I3T222_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,44.7,2e-17,coiled-coil,NULL; seg,NULL,CUFF.15942.1
         (132 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G79340.1 | Symbols: AtMC4, MC4 | metacaspase 4 | chr1:2984284...    51   2e-07
AT1G79330.1 | Symbols: AMC6, ATMCP2B, ATMC5, MC5 | metacaspase 5...    48   2e-06

>AT1G79340.1 | Symbols: AtMC4, MC4 | metacaspase 4 |
           chr1:29842849-29844368 FORWARD LENGTH=418
          Length = 418

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 4/57 (7%)

Query: 79  YGGFTSAILDIIEETQGQVTNVEL---ARKAMEKTRMQVVPGLHCNDSHHAYVPFIC 132
           YG  +++I  I+EET G+++N E+   ARKA++K      PGL+C+D  +A  PFIC
Sbjct: 363 YGAMSNSIQTILEETDGEISNREMVTRARKALKKQGFTQQPGLYCHDG-YANAPFIC 418


>AT1G79330.1 | Symbols: AMC6, ATMCP2B, ATMC5, MC5 | metacaspase 5 |
           chr1:29838722-29840137 FORWARD LENGTH=410
          Length = 410

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 4/57 (7%)

Query: 79  YGGFTSAILDIIEETQGQVTNVEL---ARKAMEKTRMQVVPGLHCNDSHHAYVPFIC 132
           YG FT+A+  I+EET+G +T  EL   ARK ++K      PGL+C+DS     PFIC
Sbjct: 355 YGAFTNAVQIILEETKGMITYKELVLKARKLLKKQGFSQRPGLYCSDS-FVNAPFIC 410