Miyakogusa Predicted Gene

Lj0g3v0243989.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0243989.1 Non Chatacterized Hit- tr|D8RK95|D8RK95_SELML
Putative uncharacterized protein OS=Selaginella
moelle,48.67,3e-19,seg,NULL,CUFF.15939.1
         (167 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G56720.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   100   6e-22
AT3G56720.1 | Symbols:  | unknown protein; Has 6239 Blast hits t...   100   6e-22
AT3G56720.3 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    73   1e-13

>AT3G56720.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 24 plant
           structures; EXPRESSED DURING: 15 growth stages. |
           chr3:21011354-21013264 FORWARD LENGTH=387
          Length = 387

 Score =  100 bits (248), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 80/124 (64%), Positives = 84/124 (67%), Gaps = 7/124 (5%)

Query: 46  DFDAAKVAAMRAAELVNKNLVGAGCLTTDQKKKLLWGAKKSTPTEESGHRWD--TAMFTD 103
           D DAAKVAAM+AAELVNKNLVG G LTTDQKKKLLWG KKST +EES HRWD  +A+  D
Sbjct: 269 DVDAAKVAAMQAAELVNKNLVGTGYLTTDQKKKLLWGKKKSTASEESAHRWDNASALIGD 328

Query: 104 RERQEKFNKLMGVKGEAKVEQXXXXXXXXXXXRAXXXXXXXXXXXXXYTAGLRRRDGRTV 163
            ERQEKFNKLMGVK  AKV              A             YTAGLRRRDGRTV
Sbjct: 329 PERQEKFNKLMGVK--AKV---VNQEQNLGEVEAEKQKELQMDLEKQYTAGLRRRDGRTV 383

Query: 164 GLGL 167
           GLGL
Sbjct: 384 GLGL 387


>AT3G56720.1 | Symbols:  | unknown protein; Has 6239 Blast hits to
           4635 proteins in 365 species: Archae - 6; Bacteria -
           230; Metazoa - 3389; Fungi - 659; Plants - 656; Viruses
           - 13; Other Eukaryotes - 1286 (source: NCBI BLink). |
           chr3:21011354-21013264 FORWARD LENGTH=386
          Length = 386

 Score =  100 bits (248), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 80/124 (64%), Positives = 84/124 (67%), Gaps = 7/124 (5%)

Query: 46  DFDAAKVAAMRAAELVNKNLVGAGCLTTDQKKKLLWGAKKSTPTEESGHRWD--TAMFTD 103
           D DAAKVAAM+AAELVNKNLVG G LTTDQKKKLLWG KKST +EES HRWD  +A+  D
Sbjct: 268 DVDAAKVAAMQAAELVNKNLVGTGYLTTDQKKKLLWGKKKSTASEESAHRWDNASALIGD 327

Query: 104 RERQEKFNKLMGVKGEAKVEQXXXXXXXXXXXRAXXXXXXXXXXXXXYTAGLRRRDGRTV 163
            ERQEKFNKLMGVK  AKV              A             YTAGLRRRDGRTV
Sbjct: 328 PERQEKFNKLMGVK--AKV---VNQEQNLGEVEAEKQKELQMDLEKQYTAGLRRRDGRTV 382

Query: 164 GLGL 167
           GLGL
Sbjct: 383 GLGL 386


>AT3G56720.3 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 24 plant
           structures; EXPRESSED DURING: 15 growth stages. |
           chr3:21011354-21013422 FORWARD LENGTH=449
          Length = 449

 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/74 (75%), Positives = 62/74 (83%), Gaps = 2/74 (2%)

Query: 46  DFDAAKVAAMRAAELVNKNLVGAGCLTTDQKKKLLWGAKKSTPTEESGHRWD--TAMFTD 103
           D DAAKVAAM+AAELVNKNLVG G LTTDQKKKLLWG KKST +EES HRWD  +A+  D
Sbjct: 268 DVDAAKVAAMQAAELVNKNLVGTGYLTTDQKKKLLWGKKKSTASEESAHRWDNASALIGD 327

Query: 104 RERQEKFNKLMGVK 117
            ERQEKFNKLM ++
Sbjct: 328 PERQEKFNKLMSLR 341