Miyakogusa Predicted Gene

Lj0g3v0243849.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0243849.1 Non Chatacterized Hit- tr|F6HMY3|F6HMY3_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,83.93,7e-19,seg,NULL,CUFF.15949.1
         (107 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G22850.1 | Symbols:  | SNARE associated Golgi protein family ...    53   5e-08

>AT1G22850.1 | Symbols:  | SNARE associated Golgi protein family |
           chr1:8080671-8082816 REVERSE LENGTH=344
          Length = 344

 Score = 52.8 bits (125), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/25 (88%), Positives = 24/25 (96%)

Query: 1   MLPGTWAYVSAGAFGRAIIQEESEL 25
           MLPG+WAYVSAGAFGRAIIQEES +
Sbjct: 274 MLPGSWAYVSAGAFGRAIIQEESNV 298