Miyakogusa Predicted Gene

Lj0g3v0243579.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0243579.1 Non Chatacterized Hit- tr|F6HF07|F6HF07_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,82.98,3e-16,coiled-coil,NULL; TRANSCRIPTION INITIATION FACTOR IIE,
ALPHA SUBUNIT,NULL; no description,Winged hel,CUFF.15912.1
         (89 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G03280.1 | Symbols:  | Transcription factor TFIIE, alpha subu...   140   2e-34
AT4G20810.1 | Symbols:  | transcription initiation factor IIE (T...   111   9e-26
AT4G20340.1 | Symbols:  | Transcription factor TFIIE, alpha subu...   101   1e-22

>AT1G03280.1 | Symbols:  | Transcription factor TFIIE, alpha subunit
           | chr1:803635-806758 FORWARD LENGTH=479
          Length = 479

 Score =  140 bits (353), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 65/89 (73%), Positives = 76/89 (85%)

Query: 1   MIEPYNKLVKLAARAFYDDLTSKGDNQPKSGRSDNRGIAVVVLDALTRRQWVREEDLAKD 60
           +++P+ KLV+L ARAFYDD T+K DNQ KS RSDNRGIA VVLDAL RRQWVREEDLAKD
Sbjct: 12  VLQPFVKLVRLVARAFYDDYTTKSDNQQKSARSDNRGIAAVVLDALARRQWVREEDLAKD 71

Query: 61  LKLHTKQLRRTLRFFEEEKIITRDHRREV 89
           L+LH KQLR+ +R FEEEK+I RDHR+E 
Sbjct: 72  LQLHAKQLRKIIRLFEEEKLIMRDHRKET 100


>AT4G20810.1 | Symbols:  | transcription initiation factor IIE
          (TFIIE) alpha subunit family protein / general
          transcription factor TFIIE family protein |
          chr4:11141427-11143597 REVERSE LENGTH=416
          Length = 416

 Score =  111 bits (278), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 53/81 (65%), Positives = 67/81 (82%)

Query: 8  LVKLAARAFYDDLTSKGDNQPKSGRSDNRGIAVVVLDALTRRQWVREEDLAKDLKLHTKQ 67
          +VKL A+ FYD+ T K +NQ KS ++ + GIAV+VLDALTRRQWVREEDLAK+LKL+TKQ
Sbjct: 1  MVKLVAKTFYDNYTPKNNNQKKSAKNGSGGIAVLVLDALTRRQWVREEDLAKELKLNTKQ 60

Query: 68 LRRTLRFFEEEKIITRDHRRE 88
          LR  LR+FEE++ I R HR+E
Sbjct: 61 LRTILRYFEEQQFIMRVHRKE 81


>AT4G20340.1 | Symbols:  | Transcription factor TFIIE, alpha subunit
           | chr4:10985011-10987748 FORWARD LENGTH=475
          Length = 475

 Score =  101 bits (252), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 69/89 (77%), Gaps = 1/89 (1%)

Query: 1   MIEPYNKLVKLAARAFYDDLTSKGDNQPKSGRSDNRGIAVVVLDALTRRQWVREEDLAKD 60
           ++EP+ KLV+L  R FYD+ T + DNQ KS + + +G AV+VLDALTRRQWVREEDLAK+
Sbjct: 13  VLEPFVKLVRLLVRIFYDNYTPESDNQQKSVK-NVKGSAVIVLDALTRRQWVREEDLAKE 71

Query: 61  LKLHTKQLRRTLRFFEEEKIITRDHRREV 89
           +K + K+LR+ +R FEE+K + R HR+E 
Sbjct: 72  VKRNAKELRKLIRHFEEQKFVMRYHRKET 100