Miyakogusa Predicted Gene

Lj0g3v0243119.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0243119.1 Non Chatacterized Hit- tr|K3Z5F8|K3Z5F8_SETIT
Uncharacterized protein OS=Setaria italica GN=Si021776,47.41,3e-19,K
homology RNA-binding domain,K Homology domain; KH_1,K Homology domain,
type 1; Eukaryotic type
KH-,NODE_46538_length_533_cov_164.864914.path1.1
         (112 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G26000.1 | Symbols: PEP | RNA-binding KH domain-containing pr...   163   2e-41
AT3G04610.1 | Symbols: FLK | RNA-binding KH domain-containing pr...   109   3e-25
AT1G14170.3 | Symbols:  | RNA-binding KH domain-containing prote...    62   6e-11
AT1G14170.2 | Symbols:  | RNA-binding KH domain-containing prote...    61   1e-10
AT1G14170.1 | Symbols:  | RNA-binding KH domain-containing prote...    61   1e-10
AT1G51580.1 | Symbols:  | RNA-binding KH domain-containing prote...    53   5e-08
AT5G15270.1 | Symbols:  | RNA-binding KH domain-containing prote...    52   1e-07
AT5G15270.2 | Symbols:  | RNA-binding KH domain-containing prote...    52   1e-07
AT5G09560.1 | Symbols:  | RNA-binding KH domain-containing prote...    49   6e-07
AT2G03110.1 | Symbols:  | RNA binding;nucleic acid binding | chr...    46   4e-06
AT4G18375.1 | Symbols:  | RNA-binding KH domain-containing prote...    46   5e-06
AT5G64390.3 | Symbols: HEN4 | RNA-binding KH domain-containing p...    46   6e-06
AT5G64390.2 | Symbols: HEN4 | RNA-binding KH domain-containing p...    46   6e-06
AT5G64390.1 | Symbols: HEN4 | RNA-binding KH domain-containing p...    46   6e-06
AT5G46190.1 | Symbols:  | RNA-binding KH domain-containing prote...    46   6e-06
AT4G18375.2 | Symbols:  | RNA-binding KH domain-containing prote...    45   7e-06

>AT4G26000.1 | Symbols: PEP | RNA-binding KH domain-containing
           protein | chr4:13197280-13199539 FORWARD LENGTH=495
          Length = 495

 Score =  163 bits (413), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 81/116 (69%), Positives = 99/116 (85%), Gaps = 4/116 (3%)

Query: 1   MDAVIRIFKRVSGLAEIE----AAPGATFCSVRLLVASTQAINLIGKQGSLIKSIQESTG 56
           MDAV+R+F+RVSGL + +       G+ F SVRLLVASTQAINLIGKQGSLIKSI E++G
Sbjct: 137 MDAVLRVFRRVSGLPDNDDDDVQNAGSVFSSVRLLVASTQAINLIGKQGSLIKSIVENSG 196

Query: 57  AAVRVLTGDELPSYAAADERIVEVQGEPLKVLKALEAVVGHLRKFLVDHTVLPLFE 112
           A+VR+L+ +E P YAA DERIV++QGE LK+LKALEA+VGHLR+FLVDHTV+PLFE
Sbjct: 197 ASVRILSEEETPFYAAQDERIVDLQGEALKILKALEAIVGHLRRFLVDHTVVPLFE 252


>AT3G04610.1 | Symbols: FLK | RNA-binding KH domain-containing
           protein | chr3:1250762-1254272 REVERSE LENGTH=577
          Length = 577

 Score =  109 bits (273), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 57/114 (50%), Positives = 78/114 (68%), Gaps = 2/114 (1%)

Query: 1   MDAVIRIFKR-VSGL-AEIEAAPGATFCSVRLLVASTQAINLIGKQGSLIKSIQESTGAA 58
           MD ++R+  R V GL  E   AP  +  S RLLV ++QA +LIGKQG  +K+IQE++   
Sbjct: 250 MDGLLRVHMRIVDGLDGEASQAPPPSKVSTRLLVPASQAGSLIGKQGGTVKAIQEASACI 309

Query: 59  VRVLTGDELPSYAAADERIVEVQGEPLKVLKALEAVVGHLRKFLVDHTVLPLFE 112
           VRVL  ++LP +A  D+R+VEV GEP  V +ALE +  HLRKFLVD +++P FE
Sbjct: 310 VRVLGSEDLPVFALQDDRVVEVVGEPTSVHRALELIASHLRKFLVDRSIIPFFE 363


>AT1G14170.3 | Symbols:  | RNA-binding KH domain-containing protein
           | chr1:4843463-4845253 REVERSE LENGTH=479
          Length = 479

 Score = 62.4 bits (150), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 41/112 (36%), Positives = 65/112 (58%), Gaps = 4/112 (3%)

Query: 1   MDAVIRIFKRVSGLAEIEAAPGATFCSVRLLVASTQAINLIGKQGSLIKSIQESTGAAVR 60
           ++A IR+ +R S     +A   A   S RLLV+S+Q   LIGK G++I  ++  T A +R
Sbjct: 331 VNAAIRLQQRCSEKVGKDANDLAI--STRLLVSSSQIGCLIGKGGAVISEMRSVTRANIR 388

Query: 61  VLTGDELPSYAAADERIVEVQGEPLKVLKALEAVVGHLR--KFLVDHTVLPL 110
           +L  +++P  A  DE +V++ G P   +KAL  V+  LR   F +DH ++ L
Sbjct: 389 ILQKEDVPKIAREDEEMVQITGSPDAAMKALTQVILRLRANSFDMDHGLVLL 440


>AT1G14170.2 | Symbols:  | RNA-binding KH domain-containing protein
           | chr1:4843463-4845253 REVERSE LENGTH=446
          Length = 446

 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 62/107 (57%), Gaps = 4/107 (3%)

Query: 1   MDAVIRIFKRVSGLAEIEAAPGATFCSVRLLVASTQAINLIGKQGSLIKSIQESTGAAVR 60
           ++A IR+ +R S     +A   A   S RLLV+S+Q   LIGK G++I  ++  T A +R
Sbjct: 298 VNAAIRLQQRCSEKVGKDANDLAI--STRLLVSSSQIGCLIGKGGAVISEMRSVTRANIR 355

Query: 61  VLTGDELPSYAAADERIVEVQGEPLKVLKALEAVVGHLR--KFLVDH 105
           +L  +++P  A  DE +V++ G P   +KAL  V+  LR   F +DH
Sbjct: 356 ILQKEDVPKIAREDEEMVQITGSPDAAMKALTQVILRLRANSFDMDH 402


>AT1G14170.1 | Symbols:  | RNA-binding KH domain-containing protein
           | chr1:4843463-4845253 REVERSE LENGTH=454
          Length = 454

 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 62/107 (57%), Gaps = 4/107 (3%)

Query: 1   MDAVIRIFKRVSGLAEIEAAPGATFCSVRLLVASTQAINLIGKQGSLIKSIQESTGAAVR 60
           ++A IR+ +R S     +A   A   S RLLV+S+Q   LIGK G++I  ++  T A +R
Sbjct: 306 VNAAIRLQQRCSEKVGKDANDLAI--STRLLVSSSQIGCLIGKGGAVISEMRSVTRANIR 363

Query: 61  VLTGDELPSYAAADERIVEVQGEPLKVLKALEAVVGHLR--KFLVDH 105
           +L  +++P  A  DE +V++ G P   +KAL  V+  LR   F +DH
Sbjct: 364 ILQKEDVPKIAREDEEMVQITGSPDAAMKALTQVILRLRANSFDMDH 410


>AT1G51580.1 | Symbols:  | RNA-binding KH domain-containing protein
           | chr1:19125612-19128102 FORWARD LENGTH=621
          Length = 621

 Score = 52.8 bits (125), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 4/99 (4%)

Query: 2   DAVIRIFKRVSGLAEIEAAPGATFCSVRLLVASTQAINLIGKQGSLIKSIQESTGAAVRV 61
           D V+R+  R+    EI   P A   + RLLV S     L+GK G LI  ++ +TGA++RV
Sbjct: 340 DGVMRVHNRI---VEIGFEPSAAVVA-RLLVHSPYIGRLLGKGGHLISEMRRATGASIRV 395

Query: 62  LTGDELPSYAAADERIVEVQGEPLKVLKALEAVVGHLRK 100
              D+   Y +  + IV+V G    V  AL  ++  LR+
Sbjct: 396 FAKDQATKYESQHDEIVQVIGNLKTVQDALFQILCRLRE 434


>AT5G15270.1 | Symbols:  | RNA-binding KH domain-containing protein
           | chr5:4958738-4960947 FORWARD LENGTH=548
          Length = 548

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 56/101 (55%), Gaps = 2/101 (1%)

Query: 2   DAVIRIFKRV-SGLAEIEAAP-GATFCSVRLLVASTQAINLIGKQGSLIKSIQESTGAAV 59
           DA+ RI  RV +  A  E +P G    + +LLV S Q   ++G+ G ++++I+  TGA +
Sbjct: 121 DALFRIHDRVVADDARSEDSPEGEKQVTAKLLVPSDQIGCILGRGGQIVQNIRSETGAQI 180

Query: 60  RVLTGDELPSYAAADERIVEVQGEPLKVLKALEAVVGHLRK 100
           R++    +P  A   + ++++ GE L V KAL  +   L +
Sbjct: 181 RIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRLHE 221



 Score = 51.2 bits (121), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 2/104 (1%)

Query: 1   MDAVIRIFKRVSGLAEIEAAPGATFCSVRLLVASTQAINLIGKQGSLIKSIQESTGAAVR 60
           ++AV+R+  + S   ++E   G    + RLLV S++   ++GK G++I  ++  T A +R
Sbjct: 347 IEAVMRLQPKCSD--KVERDSGLVSFTTRLLVPSSRIGCILGKGGAIITEMRRMTKANIR 404

Query: 61  VLTGDELPSYAAADERIVEVQGEPLKVLKALEAVVGHLRKFLVD 104
           +L  + LP  A+ D+ +V++ GE     +AL  +   LR  + D
Sbjct: 405 ILGKENLPKVASDDDEMVQISGELDVAKEALIQITSRLRANVFD 448


>AT5G15270.2 | Symbols:  | RNA-binding KH domain-containing protein
           | chr5:4958738-4960947 FORWARD LENGTH=548
          Length = 548

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 56/101 (55%), Gaps = 2/101 (1%)

Query: 2   DAVIRIFKRV-SGLAEIEAAP-GATFCSVRLLVASTQAINLIGKQGSLIKSIQESTGAAV 59
           DA+ RI  RV +  A  E +P G    + +LLV S Q   ++G+ G ++++I+  TGA +
Sbjct: 121 DALFRIHDRVVADDARSEDSPEGEKQVTAKLLVPSDQIGCILGRGGQIVQNIRSETGAQI 180

Query: 60  RVLTGDELPSYAAADERIVEVQGEPLKVLKALEAVVGHLRK 100
           R++    +P  A   + ++++ GE L V KAL  +   L +
Sbjct: 181 RIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRLHE 221



 Score = 51.2 bits (121), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 2/104 (1%)

Query: 1   MDAVIRIFKRVSGLAEIEAAPGATFCSVRLLVASTQAINLIGKQGSLIKSIQESTGAAVR 60
           ++AV+R+  + S   ++E   G    + RLLV S++   ++GK G++I  ++  T A +R
Sbjct: 347 IEAVMRLQPKCSD--KVERDSGLVSFTTRLLVPSSRIGCILGKGGAIITEMRRMTKANIR 404

Query: 61  VLTGDELPSYAAADERIVEVQGEPLKVLKALEAVVGHLRKFLVD 104
           +L  + LP  A+ D+ +V++ GE     +AL  +   LR  + D
Sbjct: 405 ILGKENLPKVASDDDEMVQISGELDVAKEALIQITSRLRANVFD 448


>AT5G09560.1 | Symbols:  | RNA-binding KH domain-containing protein
           | chr5:2967170-2969655 FORWARD LENGTH=612
          Length = 612

 Score = 48.9 bits (115), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 48/80 (60%)

Query: 27  SVRLLVASTQAINLIGKQGSLIKSIQESTGAAVRVLTGDELPSYAAADERIVEVQGEPLK 86
           + RL+V S Q   L+G++G +  +IQ+ TGA + VL  ++ P   + + ++V++ GE   
Sbjct: 395 TARLVVRSNQINCLLGEEGRIKTTIQQRTGAFITVLNVEQNPKCVSENNQVVQISGEFPN 454

Query: 87  VLKALEAVVGHLRKFLVDHT 106
           V +A+  V   LR+ L++ +
Sbjct: 455 VREAINQVTSMLREDLINQS 474


>AT2G03110.1 | Symbols:  | RNA binding;nucleic acid binding |
           chr2:935432-935975 FORWARD LENGTH=153
          Length = 153

 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 3/75 (4%)

Query: 22  GATFCSVRLLVASTQAINLIGKQGSLIKSIQESTGAAVRVLTGDELP--SYAAADERIVE 79
           G T  +VR+LV S Q   LIGK G +I++++  T A +RV   D LP  + A + + +++
Sbjct: 69  GQTVVTVRMLVPSDQIGYLIGKGGPIIQTLRNDTNAQIRV-RNDNLPMCALALSHDELLQ 127

Query: 80  VQGEPLKVLKALEAV 94
           + G+P  V +AL  V
Sbjct: 128 IIGDPSAVREALYQV 142


>AT4G18375.1 | Symbols:  | RNA-binding KH domain-containing protein
           | chr4:10152825-10154836 FORWARD LENGTH=532
          Length = 532

 Score = 45.8 bits (107), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 3/75 (4%)

Query: 29  RLLVASTQAINLIGKQGSLIKSIQESTGAAVRVLTGD-ELPSYAAADE--RIVEVQGEPL 85
           RLLV  +Q+ +LIGK G  IK I+  T A+V+V++ D   PS+  A E   +V + GEP 
Sbjct: 142 RLLVPFSQSSSLIGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPE 201

Query: 86  KVLKALEAVVGHLRK 100
            V +AL AV   + K
Sbjct: 202 SVKQALFAVSAIMYK 216


>AT5G64390.3 | Symbols: HEN4 | RNA-binding KH domain-containing
           protein | chr5:25743442-25747380 FORWARD LENGTH=866
          Length = 866

 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 7/92 (7%)

Query: 3   AVIRIFKRVSGLAEIEAAPGATFCSVRLLVASTQAINLIGKQGSLIKSIQESTGAAVRVL 62
           A+I++F+    L   EA      C  RLL  S+ A  +IGK G ++ SI++ TG  + + 
Sbjct: 133 ALIKVFE----LLAAEADSDTVVC--RLLTESSHAGAVIGKGGQMVGSIRKETGCKISIR 186

Query: 63  TGDELPSYAAADERIVEVQGEPLKVLKALEAV 94
             + LP  A  D+ +VEV+G  + V KAL ++
Sbjct: 187 I-ENLPICADTDDEMVEVEGNAIAVKKALVSI 217



 Score = 45.4 bits (106), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 65/108 (60%), Gaps = 4/108 (3%)

Query: 3   AVIRIFKRVSGLAE---IEAAPGATFCSVRLLVASTQAINLIGKQGSLIKSIQESTGAAV 59
           A++ IF R+  LA    ++  P ++  + RL+V ++Q   ++GK G ++  ++++TGAA+
Sbjct: 517 AIMLIFSRLFELATNKILDNGPRSSI-TARLVVPTSQIGCVLGKGGVIVSEMRKTTGAAI 575

Query: 60  RVLTGDELPSYAAADERIVEVQGEPLKVLKALEAVVGHLRKFLVDHTV 107
           ++L  ++ P   + ++++V++ GE   V +A+  +   LR  +  +++
Sbjct: 576 QILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLRDSVFSNSM 623


>AT5G64390.2 | Symbols: HEN4 | RNA-binding KH domain-containing
           protein | chr5:25743442-25746742 FORWARD LENGTH=824
          Length = 824

 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 7/92 (7%)

Query: 3   AVIRIFKRVSGLAEIEAAPGATFCSVRLLVASTQAINLIGKQGSLIKSIQESTGAAVRVL 62
           A+I++F+    L   EA      C  RLL  S+ A  +IGK G ++ SI++ TG  + + 
Sbjct: 133 ALIKVFE----LLAAEADSDTVVC--RLLTESSHAGAVIGKGGQMVGSIRKETGCKISIR 186

Query: 63  TGDELPSYAAADERIVEVQGEPLKVLKALEAV 94
             + LP  A  D+ +VEV+G  + V KAL ++
Sbjct: 187 I-ENLPICADTDDEMVEVEGNAIAVKKALVSI 217



 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 65/108 (60%), Gaps = 4/108 (3%)

Query: 3   AVIRIFKRVSGLAE---IEAAPGATFCSVRLLVASTQAINLIGKQGSLIKSIQESTGAAV 59
           A++ IF R+  LA    ++  P ++  + RL+V ++Q   ++GK G ++  ++++TGAA+
Sbjct: 517 AIMLIFSRLFELATNKILDNGPRSSI-TARLVVPTSQIGCVLGKGGVIVSEMRKTTGAAI 575

Query: 60  RVLTGDELPSYAAADERIVEVQGEPLKVLKALEAVVGHLRKFLVDHTV 107
           ++L  ++ P   + ++++V++ GE   V +A+  +   LR  +  +++
Sbjct: 576 QILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLRDSVFSNSM 623


>AT5G64390.1 | Symbols: HEN4 | RNA-binding KH domain-containing
           protein | chr5:25743442-25747380 FORWARD LENGTH=857
          Length = 857

 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 7/89 (7%)

Query: 3   AVIRIFKRVSGLAEIEAAPGATFCSVRLLVASTQAINLIGKQGSLIKSIQESTGAAVRVL 62
           A+I++F+    L   EA      C  RLL  S+ A  +IGK G ++ SI++ TG  + + 
Sbjct: 133 ALIKVFE----LLAAEADSDTVVC--RLLTESSHAGAVIGKGGQMVGSIRKETGCKISIR 186

Query: 63  TGDELPSYAAADERIVEVQGEPLKVLKAL 91
             + LP  A  D+ +VEV+G  + V KAL
Sbjct: 187 I-ENLPICADTDDEMVEVEGNAIAVKKAL 214



 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 65/108 (60%), Gaps = 4/108 (3%)

Query: 3   AVIRIFKRVSGLAE---IEAAPGATFCSVRLLVASTQAINLIGKQGSLIKSIQESTGAAV 59
           A++ IF R+  LA    ++  P ++  + RL+V ++Q   ++GK G ++  ++++TGAA+
Sbjct: 517 AIMLIFSRLFELATNKILDNGPRSSI-TARLVVPTSQIGCVLGKGGVIVSEMRKTTGAAI 575

Query: 60  RVLTGDELPSYAAADERIVEVQGEPLKVLKALEAVVGHLRKFLVDHTV 107
           ++L  ++ P   + ++++V++ GE   V +A+  +   LR  +  +++
Sbjct: 576 QILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLRDSVFSNSM 623


>AT5G46190.1 | Symbols:  | RNA-binding KH domain-containing protein
           | chr5:18723435-18725834 REVERSE LENGTH=644
          Length = 644

 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 3/73 (4%)

Query: 25  FCSVRLLVASTQAINLIGKQGSLIKSIQESTGAAVRVLTGD-ELPSYAAAD--ERIVEVQ 81
           F   RLLV S+Q   +IGK GS+IK+I+  T A V+V++ D   PS+  A   + IV + 
Sbjct: 149 FRECRLLVPSSQCSIVIGKSGSIIKNIRGRTRANVKVVSKDVSDPSHTCAMDFDNIVMIS 208

Query: 82  GEPLKVLKALEAV 94
           GE   V KAL AV
Sbjct: 209 GETESVKKALFAV 221


>AT4G18375.2 | Symbols:  | RNA-binding KH domain-containing protein
           | chr4:10152825-10155125 FORWARD LENGTH=606
          Length = 606

 Score = 45.4 bits (106), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 3/75 (4%)

Query: 29  RLLVASTQAINLIGKQGSLIKSIQESTGAAVRVLTGD-ELPSYAAADE--RIVEVQGEPL 85
           RLLV  +Q+ +LIGK G  IK I+  T A+V+V++ D   PS+  A E   +V + GEP 
Sbjct: 142 RLLVPFSQSSSLIGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPE 201

Query: 86  KVLKALEAVVGHLRK 100
            V +AL AV   + K
Sbjct: 202 SVKQALFAVSAIMYK 216