Miyakogusa Predicted Gene

Lj0g3v0242879.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0242879.2 tr|A9SSD6|A9SSD6_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_134439,39.31,0.000000000000005,seg,NULL; eIF-4B,Plant
specific eukaryotic initiation factor 4B; coiled-coil,NULL; SUBFAMILY
NOT NAM,CUFF.16077.2
         (316 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G13020.1 | Symbols: EIF4B2 | eukaryotic initiation factor 4B2...   226   1e-59
AT3G26400.1 | Symbols: EIF4B1 | eukaryotic translation initiatio...   220   1e-57
AT4G38710.2 | Symbols:  | glycine-rich protein | chr4:18078141-1...    50   1e-06
AT4G38710.1 | Symbols:  | glycine-rich protein | chr4:18078141-1...    50   2e-06

>AT1G13020.1 | Symbols: EIF4B2 | eukaryotic initiation factor 4B2 |
           chr1:4440927-4443520 REVERSE LENGTH=549
          Length = 549

 Score =  226 bits (577), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 133/266 (50%), Positives = 159/266 (59%), Gaps = 11/266 (4%)

Query: 47  LVLDPRKGDGSVNETPPAM-TNKPSPFGAARPREEVLAQKGLDWKKLDSEIEAKKAXXX- 104
           LV +PRK D  V+ETP A+ T+KPSPFGAARPRE+VLA+KGLDWKKLDS+IEAKK     
Sbjct: 269 LVFEPRKADTEVSETPTAVKTSKPSPFGAARPREQVLAEKGLDWKKLDSDIEAKKGQTSR 328

Query: 105 --------XXXXXXXXXXXXXXEGPDAVLKPRPKVNPFGEAKPREVLLAERGADWRKIDL 156
                                    + V+KPRPKVNPFG+AKPREVLL E+G DWRKID 
Sbjct: 329 PSSAQSSRPSSAQSNRSESSALNNVENVVKPRPKVNPFGDAKPREVLLEEQGKDWRKIDS 388

Query: 157 ELERRGVDRPXXXXXXXXXXXXXXXXXXXXXXPKMN-SNQESADEAGANQTGAHAXXXXX 215
           ELE R VDRP                        +   ++ES  E+ +N           
Sbjct: 389 ELEHRRVDRPETEGERMLKEEIEELRKKLEKEAAIAPESKESQQESDSNHQNLPDLIREK 448

Query: 216 XXXXXXXIHDLDDKVRFGQKAVDRPGSSAGRTPVLSDRPPSRSGSFEDSRSVDFSDRPRS 275
                  I +LDDKVRF  +AV+RPGSSA R    S+RP SR+GS ++SRSV+  +RPRS
Sbjct: 449 EKNLDLLIRELDDKVRFRPRAVERPGSSASRGGSYSERPHSRAGSIDESRSVESMERPRS 508

Query: 276 RGTGDAWMRPSDDRRQFQGSRERGFF 301
            GTGD W RP DDRR FQGS+ERGFF
Sbjct: 509 HGTGDNWPRPVDDRRNFQGSKERGFF 534


>AT3G26400.1 | Symbols: EIF4B1 | eukaryotic translation initiation
           factor 4B1 | chr3:9666616-9669081 FORWARD LENGTH=532
          Length = 532

 Score =  220 bits (560), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 138/302 (45%), Positives = 171/302 (56%), Gaps = 27/302 (8%)

Query: 14  PARSSGY-SGFRDSGGXXXXXXXXXXXXXXXXXXLVLDPRKGDGSVNETPPAM--TNKPS 70
           P RSS + S F DSG                   LVL+PRK +   +ETPP +  T+KP+
Sbjct: 234 PVRSSTFGSSFGDSG-------------QEERRRLVLEPRKVESGGSETPPVVEKTSKPN 280

Query: 71  PFGAARPREEVLAQKGLDWKKLDSEIEAKKAXXXXXXXXXX--------XXXXXXXEGPD 122
           PFGAARPRE+VLA+KGLDWKK+DSEIEAKK                           G +
Sbjct: 281 PFGAARPREDVLAEKGLDWKKIDSEIEAKKGSSQTSRPTSAHSSRPSSAQSNRSESSGLN 340

Query: 123 AVLKPRPKVNPFGEAKPREVLLAERGADWRKIDLELERRGVDRPXXXXXXXXXXXXXXXX 182
            V+KPRPKVNPFG+AKPREVLL E+G DWRK+DLELE R VDRP                
Sbjct: 341 NVVKPRPKVNPFGDAKPREVLLEEQGKDWRKMDLELEHRRVDRPETEEEKMLKEEIEELR 400

Query: 183 XXXXXXPKMNSNQESADEAGANQTGAHAXXXXXXXXXXXXI--HDLDDKVRFGQKAVDRP 240
                       +ES  E G+N                  I   +LDDKVRF QK V+RP
Sbjct: 401 KKLEKESVAPEIKESDQEPGSNNNHNDLPEIIRGKEKDLEILTRELDDKVRFRQKPVERP 460

Query: 241 GSSAGRTPVLSDRPPSRSGSFEDSRSVDFSDRPRSRGTGDAWMRPSDD-RRQFQGSRERG 299
           GS AGRT   S+R  SR+GS +++RS + ++RPRSRG  DAW+RP+++ RR FQG++ERG
Sbjct: 461 GSGAGRTGTYSERTHSRAGSIDETRSFESTERPRSRGAVDAWVRPANEQRRNFQGTKERG 520

Query: 300 FF 301
           FF
Sbjct: 521 FF 522


>AT4G38710.2 | Symbols:  | glycine-rich protein |
           chr4:18078141-18080002 REVERSE LENGTH=465
          Length = 465

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 39/63 (61%), Gaps = 9/63 (14%)

Query: 47  LVLDPRKGDGSVNETPP------AMTNKP---SPFGAARPREEVLAQKGLDWKKLDSEIE 97
           LVL PR    +V E          +  KP   +PFG ARPREEVLA+KG DWK++D ++E
Sbjct: 281 LVLQPRTLPVAVVEVVKPESPVLVIVEKPKGANPFGNARPREEVLAEKGQDWKEIDEKLE 340

Query: 98  AKK 100
           A+K
Sbjct: 341 AEK 343



 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/42 (54%), Positives = 31/42 (73%), Gaps = 1/42 (2%)

Query: 119 EGPDAVLKPRPK-VNPFGEAKPREVLLAERGADWRKIDLELE 159
           E P  V+  +PK  NPFG A+PRE +LAE+G DW++ID +LE
Sbjct: 299 ESPVLVIVEKPKGANPFGNARPREEVLAEKGQDWKEIDEKLE 340


>AT4G38710.1 | Symbols:  | glycine-rich protein |
           chr4:18078141-18080002 REVERSE LENGTH=452
          Length = 452

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 39/63 (61%), Gaps = 9/63 (14%)

Query: 47  LVLDPRKGDGSVNETPP------AMTNKP---SPFGAARPREEVLAQKGLDWKKLDSEIE 97
           LVL PR    +V E          +  KP   +PFG ARPREEVLA+KG DWK++D ++E
Sbjct: 281 LVLQPRTLPVAVVEVVKPESPVLVIVEKPKGANPFGNARPREEVLAEKGQDWKEIDEKLE 340

Query: 98  AKK 100
           A+K
Sbjct: 341 AEK 343



 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/42 (54%), Positives = 31/42 (73%), Gaps = 1/42 (2%)

Query: 119 EGPDAVLKPRPK-VNPFGEAKPREVLLAERGADWRKIDLELE 159
           E P  V+  +PK  NPFG A+PRE +LAE+G DW++ID +LE
Sbjct: 299 ESPVLVIVEKPKGANPFGNARPREEVLAEKGQDWKEIDEKLE 340