Miyakogusa Predicted Gene

Lj0g3v0242609.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0242609.1 tr|A9SI01|A9SI01_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_185181,46.05,0.0000000000003,SUBFAMILY NOT NAMED,NULL;
SEC3/SYNTAXIN-RELATED,NULL,CUFF.15848.1
         (156 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G47550.1 | Symbols: SEC3A | exocyst complex component sec3A |...   280   2e-76
AT1G47550.2 | Symbols: SEC3A | exocyst complex component sec3A |...   280   3e-76
AT1G47560.1 | Symbols: SEC3B | exocyst complex component sec3B |...   273   4e-74

>AT1G47550.1 | Symbols: SEC3A | exocyst complex component sec3A |
           chr1:17457171-17463896 FORWARD LENGTH=887
          Length = 887

 Score =  280 bits (717), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 134/156 (85%), Positives = 141/156 (90%)

Query: 1   MAKSSADDVELRRACEAAIEDPKQKIVLSLRVAKSNGILGKSSKLGRQMAKPRVLALSTN 60
           MAKSSADD ELRRACEAAIE  KQ IV+S+RVAKS G+ GKS KLGRQMAKPRVLALS  
Sbjct: 1   MAKSSADDEELRRACEAAIEGTKQSIVMSIRVAKSRGVWGKSGKLGRQMAKPRVLALSVK 60

Query: 61  SKGQRPTAFLRVFKYSTGGVLEPAKLYKLKHLSKVEVIANDPSGCTFTLGFDNLRSQSVA 120
           SKG R  AFLRV KYS+GGVLEPAK+YKLKHLSKVEVI NDPSGCTFTLGFDNLRSQSVA
Sbjct: 61  SKGPRKKAFLRVMKYSSGGVLEPAKMYKLKHLSKVEVITNDPSGCTFTLGFDNLRSQSVA 120

Query: 121 PPQWTMRNTDDRNRLLLCILTICKDVLGRLPKVVGV 156
           PPQWTMRNTDDRNRLL+CIL ICKDVLGRLPKVVG+
Sbjct: 121 PPQWTMRNTDDRNRLLVCILNICKDVLGRLPKVVGI 156


>AT1G47550.2 | Symbols: SEC3A | exocyst complex component sec3A |
           chr1:17457171-17463896 FORWARD LENGTH=888
          Length = 888

 Score =  280 bits (716), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 134/156 (85%), Positives = 141/156 (90%)

Query: 1   MAKSSADDVELRRACEAAIEDPKQKIVLSLRVAKSNGILGKSSKLGRQMAKPRVLALSTN 60
           MAKSSADD ELRRACEAAIE  KQ IV+S+RVAKS G+ GKS KLGRQMAKPRVLALS  
Sbjct: 1   MAKSSADDEELRRACEAAIEGTKQSIVMSIRVAKSRGVWGKSGKLGRQMAKPRVLALSVK 60

Query: 61  SKGQRPTAFLRVFKYSTGGVLEPAKLYKLKHLSKVEVIANDPSGCTFTLGFDNLRSQSVA 120
           SKG R  AFLRV KYS+GGVLEPAK+YKLKHLSKVEVI NDPSGCTFTLGFDNLRSQSVA
Sbjct: 61  SKGPRKKAFLRVMKYSSGGVLEPAKMYKLKHLSKVEVITNDPSGCTFTLGFDNLRSQSVA 120

Query: 121 PPQWTMRNTDDRNRLLLCILTICKDVLGRLPKVVGV 156
           PPQWTMRNTDDRNRLL+CIL ICKDVLGRLPKVVG+
Sbjct: 121 PPQWTMRNTDDRNRLLVCILNICKDVLGRLPKVVGI 156


>AT1G47560.1 | Symbols: SEC3B | exocyst complex component sec3B |
           chr1:17466751-17473190 FORWARD LENGTH=887
          Length = 887

 Score =  273 bits (698), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 131/156 (83%), Positives = 139/156 (89%)

Query: 1   MAKSSADDVELRRACEAAIEDPKQKIVLSLRVAKSNGILGKSSKLGRQMAKPRVLALSTN 60
           MAKSSADD ELRRACEAAIE  KQ IV+S+RVAKS G+ GKS KLGRQMAKPRVLALS  
Sbjct: 1   MAKSSADDEELRRACEAAIEGTKQSIVMSIRVAKSRGVWGKSGKLGRQMAKPRVLALSVK 60

Query: 61  SKGQRPTAFLRVFKYSTGGVLEPAKLYKLKHLSKVEVIANDPSGCTFTLGFDNLRSQSVA 120
           SKG R  A LRV KYS+GGVLEPAK+Y LKHLSKVEVI +DPSGCTFTLGFDNLRSQSVA
Sbjct: 61  SKGPRKKAILRVMKYSSGGVLEPAKMYDLKHLSKVEVITSDPSGCTFTLGFDNLRSQSVA 120

Query: 121 PPQWTMRNTDDRNRLLLCILTICKDVLGRLPKVVGV 156
           PPQWTMRNTDDRNRLL+CIL ICKDVLGRLPKVVG+
Sbjct: 121 PPQWTMRNTDDRNRLLVCILNICKDVLGRLPKVVGI 156