Miyakogusa Predicted Gene

Lj0g3v0242399.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0242399.1 tr|E9HLF4|E9HLF4_DAPPU Ubiquitin
carboxyl-terminal hydrolase OS=Daphnia pulex GN=DAPPUDRAFT_261673
P,30.88,2e-18,seg,NULL; Cysteine proteinases,NULL; DUSP-like,NULL;
UCH_2_3,Peptidase C19, ubiquitin carboxyl-termi,CUFF.15851.1
         (314 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G49600.1 | Symbols: UBP26, SUP32, ATUBP26 | ubiquitin-specifi...   305   2e-83
AT1G51710.2 | Symbols: UBP6 | ubiquitin-specific protease 6 | ch...    51   1e-06
AT1G51710.1 | Symbols: UBP6, ATUBP6 | ubiquitin-specific proteas...    51   1e-06
AT3G21280.1 | Symbols: UBP7 | ubiquitin-specific protease 7 | ch...    50   2e-06

>AT3G49600.1 | Symbols: UBP26, SUP32, ATUBP26 | ubiquitin-specific
           protease 26 | chr3:18380942-18386662 REVERSE LENGTH=1067
          Length = 1067

 Score =  305 bits (781), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 159/315 (50%), Positives = 206/315 (65%), Gaps = 11/315 (3%)

Query: 1   MHHRLSEPPQCELIYDLSAVLIHKGTAANSGHYIAHIKDENTGQWWEFDDEHVTNLGRHP 60
           M  RL+E  Q +L YDLSAVLIHKG+A NSGHY+AHIKDE TG WWEFDDEHV+ LG+ P
Sbjct: 328 MGSRLAESSQNKLTYDLSAVLIHKGSAVNSGHYVAHIKDEKTGLWWEFDDEHVSELGKRP 387

Query: 61  FGE-EASCPTSKSVKTDVDNSNISEAMVTDNNGNGLSTTHXXXXXXXXXXXXDAYMLMYH 119
             E  +S P S+S      N   S   +TD   +G S+              DAYMLMY 
Sbjct: 388 CNEASSSTPQSES------NGTASSGNITDGIQSG-SSDCRSAIKSEVFSSSDAYMLMYS 440

Query: 120 LKRTKNVDEKGGMVCGANHRESDDGAVTAHENGCLPSHFSEEIQNFNASYVDACEQYSHR 179
           L+  K  +++G      N  +   G V   + G LP H SE I N NA ++++C+QY+ R
Sbjct: 441 LRCDKQENQEGQ---KENPIDITKGEVKQLKGGYLPKHLSEWINNMNAVFLESCKQYNLR 497

Query: 180 KELEVSRINERKQEVRSVLAEAPVQPLEQPYFWISSDWLRQWAENIIPTAIDNTSLQCSH 239
           KE E++ + ER+QEVR++L+EA VQ LE+ YFWIS+DWLR WA+  +P A+DNT L CSH
Sbjct: 498 KEKELNALTERRQEVRTILSEAAVQSLEEQYFWISTDWLRLWADTTLPPALDNTPLLCSH 557

Query: 240 GKVPVSKVASMKRLSSKAWDQLLSKYGGGPKLAHDDCCWDCLIDGAQNVVSADTYRDQRE 299
           GKV  SKV  MKR+S  AW +L SK+ GGPKL   D C DCL+DGA+ VVS+D+YRD+R 
Sbjct: 558 GKVHASKVNCMKRISELAWIKLESKFNGGPKLGKGDYCRDCLMDGARMVVSSDSYRDRRT 617

Query: 300 SLKQLAREILDGNCE 314
            +K +A ++L G CE
Sbjct: 618 FMKSIANDVLSGKCE 632


>AT1G51710.2 | Symbols: UBP6 | ubiquitin-specific protease 6 |
           chr1:19175805-19179399 REVERSE LENGTH=443
          Length = 443

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/39 (56%), Positives = 32/39 (82%), Gaps = 1/39 (2%)

Query: 14  IYDLSAVLIHKGTAANSGHYIAHIKDENTGQWWEFDDEH 52
           IYDL AVL HKG +A+SGHY+A +K E +G+W ++DD++
Sbjct: 373 IYDLVAVLTHKGRSADSGHYVAWVKQE-SGKWIQYDDDN 410


>AT1G51710.1 | Symbols: UBP6, ATUBP6 | ubiquitin-specific protease 6
           | chr1:19175805-19179894 REVERSE LENGTH=482
          Length = 482

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/39 (56%), Positives = 32/39 (82%), Gaps = 1/39 (2%)

Query: 14  IYDLSAVLIHKGTAANSGHYIAHIKDENTGQWWEFDDEH 52
           IYDL AVL HKG +A+SGHY+A +K E +G+W ++DD++
Sbjct: 412 IYDLVAVLTHKGRSADSGHYVAWVKQE-SGKWIQYDDDN 449


>AT3G21280.1 | Symbols: UBP7 | ubiquitin-specific protease 7 |
           chr3:7478166-7482037 REVERSE LENGTH=532
          Length = 532

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 36/50 (72%), Gaps = 2/50 (4%)

Query: 9   PQCELIYDLSAVLIHKGTAANSGHYIAHIKDENTGQWWEFDDEHVTNLGR 58
           P    IYDL +VL HKG +A+SGHY+A +K E +G+W ++DD + T+L R
Sbjct: 457 PHMTGIYDLVSVLTHKGRSADSGHYVAWVKQE-SGKWVQYDDAN-TSLQR 504