Miyakogusa Predicted Gene

Lj0g3v0242249.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0242249.1 Non Chatacterized Hit- tr|C5L3W2|C5L3W2_PERM5
ATP-binding cassette transporter, putative
OS=Perkinsu,31.17,0.000007,seg,NULL; ATP-BINDING CASSETTE
TRANSPORTER-RELATED,NULL; ATP-BINDING CASSETTE
TRANSPORTER,NULL,CUFF.15829.1
         (116 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G60740.1 | Symbols:  | ABC transporter family protein | chr5:...   183   2e-47
AT1G53390.1 | Symbols:  | P-loop containing nucleoside triphosph...   162   4e-41
AT2G37010.1 | Symbols: ATNAP12, NAP12 | non-intrinsic ABC protei...   154   2e-38

>AT5G60740.1 | Symbols:  | ABC transporter family protein |
            chr5:24425824-24430269 REVERSE LENGTH=1109
          Length = 1109

 Score =  183 bits (464), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 78/116 (67%), Positives = 94/116 (81%)

Query: 1    MSSLAYFLSKDTIDHFNTVIKPVVYLSMFYFFTNPRSTFADNYIVLLCLVYCVTGIAYAL 60
            MSSLAYFL+KDT+DHFNT++KP+VYLSMFYFF NPRST  DNY+VL+CLVYCVTGIAY L
Sbjct: 943  MSSLAYFLAKDTVDHFNTIVKPLVYLSMFYFFNNPRSTVTDNYVVLICLVYCVTGIAYTL 1002

Query: 61   AILFQPGTAQLWSXXXXXXXXXXATQTNGSKFFKDIANLCYSKWALEAFIIANAER 116
            AILF+PG AQLWS          AT TN +K    I+ LCY++WALEAF+++NA+R
Sbjct: 1003 AILFEPGPAQLWSVLLPVVLTLIATSTNDNKIVDSISELCYTRWALEAFVVSNAQR 1058


>AT1G53390.1 | Symbols:  | P-loop containing nucleoside triphosphate
            hydrolases superfamily protein | chr1:19918197-19923579
            FORWARD LENGTH=1109
          Length = 1109

 Score =  162 bits (410), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 77/116 (66%), Positives = 89/116 (76%)

Query: 1    MSSLAYFLSKDTIDHFNTVIKPVVYLSMFYFFTNPRSTFADNYIVLLCLVYCVTGIAYAL 60
            MSS A FL+KDTID FN ++KP+VYLSMFYFFTNPRSTF DNYIVL+CLVYCVTGIAYAL
Sbjct: 943  MSSSACFLAKDTIDIFNILVKPLVYLSMFYFFTNPRSTFFDNYIVLVCLVYCVTGIAYAL 1002

Query: 61   AILFQPGTAQLWSXXXXXXXXXXATQTNGSKFFKDIANLCYSKWALEAFIIANAER 116
            AI  QP TAQL+S          ATQ   S+  + IA+L Y KWALEAF+I NA++
Sbjct: 1003 AIFLQPSTAQLFSVLLPVVLTLVATQPKNSELIRIIADLSYPKWALEAFVIGNAQK 1058


>AT2G37010.1 | Symbols: ATNAP12, NAP12 | non-intrinsic ABC protein 12
            | chr2:15541720-15546159 FORWARD LENGTH=1082
          Length = 1082

 Score =  154 bits (388), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 67/116 (57%), Positives = 85/116 (73%)

Query: 1    MSSLAYFLSKDTIDHFNTVIKPVVYLSMFYFFTNPRSTFADNYIVLLCLVYCVTGIAYAL 60
            +SSLA+F++KDT+DH NT++KP+VYLSMFYFF NPRS+F DNYIVL+CLVYCVTG+AY  
Sbjct: 916  ISSLAHFMAKDTMDHLNTIMKPLVYLSMFYFFNNPRSSFEDNYIVLVCLVYCVTGMAYIF 975

Query: 61   AILFQPGTAQLWSXXXXXXXXXXATQTNGSKFFKDIANLCYSKWALEAFIIANAER 116
            AIL+ P  AQL S          A Q   S   K + + CY KW LEAF+++NA+R
Sbjct: 976  AILYSPSAAQLLSVLVPVVMTLIANQDKESMVLKYLGSFCYPKWTLEAFVLSNAQR 1031