Miyakogusa Predicted Gene

Lj0g3v0241429.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0241429.1 Non Chatacterized Hit- tr|K4DB85|K4DB85_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,54.67,4e-16,seg,NULL,CUFF.15774.1
         (87 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G28370.1 | Symbols:  | RING/U-box superfamily protein | chr4:...    71   2e-13
AT2G20650.2 | Symbols:  | RING/U-box superfamily protein | chr2:...    69   9e-13
AT2G20650.1 | Symbols:  | RING/U-box superfamily protein | chr2:...    69   9e-13

>AT4G28370.1 | Symbols:  | RING/U-box superfamily protein |
          chr4:14035016-14039122 FORWARD LENGTH=562
          Length = 562

 Score = 70.9 bits (172), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/40 (67%), Positives = 33/40 (82%)

Query: 48 GLRPLRDRTNSWGDEWIFAGKDESDVGPFSQWNITGTYRG 87
          GLRP+R++  SW DEW+F  K E++VGPFS WNITGTYRG
Sbjct: 32 GLRPIREKPRSWSDEWLFGRKQEAEVGPFSAWNITGTYRG 71


>AT2G20650.2 | Symbols:  | RING/U-box superfamily protein |
          chr2:8903954-8907017 REVERSE LENGTH=559
          Length = 559

 Score = 68.6 bits (166), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 26/40 (65%), Positives = 31/40 (77%)

Query: 48 GLRPLRDRTNSWGDEWIFAGKDESDVGPFSQWNITGTYRG 87
          GLRP+R+   SWGDEW+F  K++   GPFS WNITGTYRG
Sbjct: 29 GLRPIRETARSWGDEWLFGKKEKGGAGPFSAWNITGTYRG 68


>AT2G20650.1 | Symbols:  | RING/U-box superfamily protein |
          chr2:8903954-8907017 REVERSE LENGTH=559
          Length = 559

 Score = 68.6 bits (166), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 26/40 (65%), Positives = 31/40 (77%)

Query: 48 GLRPLRDRTNSWGDEWIFAGKDESDVGPFSQWNITGTYRG 87
          GLRP+R+   SWGDEW+F  K++   GPFS WNITGTYRG
Sbjct: 29 GLRPIRETARSWGDEWLFGKKEKGGAGPFSAWNITGTYRG 68