Miyakogusa Predicted Gene

Lj0g3v0241419.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0241419.2 Non Chatacterized Hit- tr|G7KFX7|G7KFX7_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,68.97,0.0004,HYPOTHETICAL PROTEIN,NULL;
SYNOVIOLIN-RELATED,NULL,CUFF.15773.2
         (168 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G20650.2 | Symbols:  | RING/U-box superfamily protein | chr2:...   189   5e-49
AT2G20650.1 | Symbols:  | RING/U-box superfamily protein | chr2:...   189   5e-49
AT4G28370.1 | Symbols:  | RING/U-box superfamily protein | chr4:...   183   4e-47

>AT2G20650.2 | Symbols:  | RING/U-box superfamily protein |
           chr2:8903954-8907017 REVERSE LENGTH=559
          Length = 559

 Score =  189 bits (481), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 87/129 (67%), Positives = 111/129 (86%)

Query: 1   MVANSGKEGGLNQDGDYILSNPYHLLGVFSSQVFQESSRHKMWRRKHSPFHGMDKHCNVE 60
           +VANSGK+     + DY+LSNPYHLLG+FSSQVFQES R ++ ++K SP + M+KHCN+E
Sbjct: 145 LVANSGKKSDSGLEDDYLLSNPYHLLGIFSSQVFQESPRDRILKQKTSPIYEMEKHCNIE 204

Query: 61  IAARVSRLSSSRHEGEHDSFQLEGLMESPSVDDDVDCFSPLQLNATSINIEVYYSKAVNY 120
           IAA++S+ +SS + G+ D +Q+EGLMESP+VDD+VDCFSPL LNATSIN+EVYY+KAVNY
Sbjct: 205 IAAQISQSTSSENNGDKDRYQIEGLMESPAVDDEVDCFSPLSLNATSINVEVYYNKAVNY 264

Query: 121 TLMVTFVSF 129
           TLMVTFVSF
Sbjct: 265 TLMVTFVSF 273


>AT2G20650.1 | Symbols:  | RING/U-box superfamily protein |
           chr2:8903954-8907017 REVERSE LENGTH=559
          Length = 559

 Score =  189 bits (481), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 87/129 (67%), Positives = 111/129 (86%)

Query: 1   MVANSGKEGGLNQDGDYILSNPYHLLGVFSSQVFQESSRHKMWRRKHSPFHGMDKHCNVE 60
           +VANSGK+     + DY+LSNPYHLLG+FSSQVFQES R ++ ++K SP + M+KHCN+E
Sbjct: 145 LVANSGKKSDSGLEDDYLLSNPYHLLGIFSSQVFQESPRDRILKQKTSPIYEMEKHCNIE 204

Query: 61  IAARVSRLSSSRHEGEHDSFQLEGLMESPSVDDDVDCFSPLQLNATSINIEVYYSKAVNY 120
           IAA++S+ +SS + G+ D +Q+EGLMESP+VDD+VDCFSPL LNATSIN+EVYY+KAVNY
Sbjct: 205 IAAQISQSTSSENNGDKDRYQIEGLMESPAVDDEVDCFSPLSLNATSINVEVYYNKAVNY 264

Query: 121 TLMVTFVSF 129
           TLMVTFVSF
Sbjct: 265 TLMVTFVSF 273


>AT4G28370.1 | Symbols:  | RING/U-box superfamily protein |
           chr4:14035016-14039122 FORWARD LENGTH=562
          Length = 562

 Score =  183 bits (465), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 86/129 (66%), Positives = 108/129 (83%)

Query: 1   MVANSGKEGGLNQDGDYILSNPYHLLGVFSSQVFQESSRHKMWRRKHSPFHGMDKHCNVE 60
           +VANSGKE    Q+ + +LSNPYHLLG+FSSQVFQES R ++ +RK SP + M+KHCN+E
Sbjct: 148 LVANSGKESDSGQEDNNLLSNPYHLLGIFSSQVFQESPRDRLLKRKLSPVNEMEKHCNIE 207

Query: 61  IAARVSRLSSSRHEGEHDSFQLEGLMESPSVDDDVDCFSPLQLNATSINIEVYYSKAVNY 120
           IAA+VSR++SS + G+ + + +EGLMESP V DD DCFSPL LNATS+N+EVYY+KAVNY
Sbjct: 208 IAAQVSRVASSENNGDKNYYHMEGLMESPGVGDDGDCFSPLLLNATSVNVEVYYNKAVNY 267

Query: 121 TLMVTFVSF 129
           TLMVTFVSF
Sbjct: 268 TLMVTFVSF 276