Miyakogusa Predicted Gene
- Lj0g3v0241299.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0241299.1 Non Chatacterized Hit- tr|I1MZC5|I1MZC5_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.38149
PE,75.5,0,seg,NULL; XH,Uncharacterised domain XH; TRANSCRIPTION FACTOR
X1-LIKE,NULL; RIBONUCLEASE P PROTEIN
SU,gene.Ljchr0_pseudomol_20120828.path1.gene24822.1
(155 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G12550.2 | Symbols: | XH/XS domain-containing protein | chr3... 138 1e-33
AT3G12550.1 | Symbols: | XH/XS domain-containing protein | chr3... 138 1e-33
AT3G48670.2 | Symbols: IDN2, RDM12 | XH/XS domain-containing pro... 135 1e-32
AT3G48670.1 | Symbols: IDN2, RDM12 | XH/XS domain-containing pro... 135 1e-32
AT4G01780.1 | Symbols: | XH/XS domain-containing protein | chr4... 130 3e-31
AT1G13790.1 | Symbols: | XH/XS domain-containing protein | chr1... 120 3e-28
AT1G15910.1 | Symbols: | XH/XS domain-containing protein | chr1... 113 5e-26
AT4G00380.1 | Symbols: | XH/XS domain-containing protein | chr4... 112 1e-25
AT1G80790.1 | Symbols: | XH/XS domain-containing protein | chr1... 102 1e-22
AT3G29375.1 | Symbols: | XH domain-containing protein | chr3:11... 98 2e-21
AT5G59390.1 | Symbols: | XH/XS domain-containing protein | chr5... 95 1e-20
AT4G01180.1 | Symbols: | XH/XS domain-containing protein | chr4... 82 1e-16
AT2G16490.1 | Symbols: | XH domain-containing protein | chr2:71... 48 2e-06
>AT3G12550.2 | Symbols: | XH/XS domain-containing protein |
chr3:3978669-3981372 FORWARD LENGTH=638
Length = 638
Score = 138 bits (348), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 66/135 (48%), Positives = 84/135 (62%), Gaps = 2/135 (1%)
Query: 17 YIKLKRMGEMDTGPFLEAMKKRYNXXXXXXXXXXLCSLWAEYLKDPDWHPFKVVXXXXXX 76
+I +KRMGE+DT PF++AM+ +Y + LW EYLKDPDWHPFK +
Sbjct: 500 HIGVKRMGELDTKPFMKAMRIKYCQEDLEDWAVEVIQLWEEYLKDPDWHPFKRIKLETAE 559
Query: 77 XXXX--XXXXXXLNGLKNDIGEGAYKAVVTALTEINEYNPSGRYITSELWNYEEGRRATL 134
L LKN++G+ AY+AV AL EINEYNPSGRYI+SELWN+ E R+ATL
Sbjct: 560 TIVEVIDEDDEKLRTLKNELGDDAYQAVANALLEINEYNPSGRYISSELWNFREDRKATL 619
Query: 135 KEGAQVLLKHWEMVK 149
+EG LL+ W K
Sbjct: 620 EEGVNSLLEQWNQAK 634
>AT3G12550.1 | Symbols: | XH/XS domain-containing protein |
chr3:3978669-3981372 FORWARD LENGTH=638
Length = 638
Score = 138 bits (348), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 66/135 (48%), Positives = 84/135 (62%), Gaps = 2/135 (1%)
Query: 17 YIKLKRMGEMDTGPFLEAMKKRYNXXXXXXXXXXLCSLWAEYLKDPDWHPFKVVXXXXXX 76
+I +KRMGE+DT PF++AM+ +Y + LW EYLKDPDWHPFK +
Sbjct: 500 HIGVKRMGELDTKPFMKAMRIKYCQEDLEDWAVEVIQLWEEYLKDPDWHPFKRIKLETAE 559
Query: 77 XXXX--XXXXXXLNGLKNDIGEGAYKAVVTALTEINEYNPSGRYITSELWNYEEGRRATL 134
L LKN++G+ AY+AV AL EINEYNPSGRYI+SELWN+ E R+ATL
Sbjct: 560 TIVEVIDEDDEKLRTLKNELGDDAYQAVANALLEINEYNPSGRYISSELWNFREDRKATL 619
Query: 135 KEGAQVLLKHWEMVK 149
+EG LL+ W K
Sbjct: 620 EEGVNSLLEQWNQAK 634
>AT3G48670.2 | Symbols: IDN2, RDM12 | XH/XS domain-containing
protein | chr3:18031240-18033615 FORWARD LENGTH=647
Length = 647
Score = 135 bits (340), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 84/141 (59%), Gaps = 2/141 (1%)
Query: 16 SYIKLKRMGEMDTGPFLEAMKKRYNXXXXXXXXXXLCSLWAEYLKDPDWHPFKVVXXXXX 75
+ I +KRMGE+ T PF++AM+++Y + LW YLKD DWHPFK V
Sbjct: 506 TNIGVKRMGELVTKPFVDAMQQKYCQQDVEDRAVEVLQLWEHYLKDSDWHPFKRVKLENE 565
Query: 76 XXXXX--XXXXXXLNGLKNDIGEGAYKAVVTALTEINEYNPSGRYITSELWNYEEGRRAT 133
L LK D+G+G Y AV AL EINEYNPSGRYIT+ELWN++ ++AT
Sbjct: 566 DREVEVIDDRDEKLRELKADLGDGPYNAVTKALLEINEYNPSGRYITTELWNFKADKKAT 625
Query: 134 LKEGAQVLLKHWEMVKSKRGM 154
L+EG LL WE K KRGM
Sbjct: 626 LEEGVTCLLDQWEKAKRKRGM 646
>AT3G48670.1 | Symbols: IDN2, RDM12 | XH/XS domain-containing
protein | chr3:18031240-18033615 FORWARD LENGTH=647
Length = 647
Score = 135 bits (340), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 84/141 (59%), Gaps = 2/141 (1%)
Query: 16 SYIKLKRMGEMDTGPFLEAMKKRYNXXXXXXXXXXLCSLWAEYLKDPDWHPFKVVXXXXX 75
+ I +KRMGE+ T PF++AM+++Y + LW YLKD DWHPFK V
Sbjct: 506 TNIGVKRMGELVTKPFVDAMQQKYCQQDVEDRAVEVLQLWEHYLKDSDWHPFKRVKLENE 565
Query: 76 XXXXX--XXXXXXLNGLKNDIGEGAYKAVVTALTEINEYNPSGRYITSELWNYEEGRRAT 133
L LK D+G+G Y AV AL EINEYNPSGRYIT+ELWN++ ++AT
Sbjct: 566 DREVEVIDDRDEKLRELKADLGDGPYNAVTKALLEINEYNPSGRYITTELWNFKADKKAT 625
Query: 134 LKEGAQVLLKHWEMVKSKRGM 154
L+EG LL WE K KRGM
Sbjct: 626 LEEGVTCLLDQWEKAKRKRGM 646
>AT4G01780.1 | Symbols: | XH/XS domain-containing protein |
chr4:767310-769246 FORWARD LENGTH=472
Length = 472
Score = 130 bits (328), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 63/134 (47%), Positives = 79/134 (58%), Gaps = 2/134 (1%)
Query: 23 MGEMDTGPFLEAMKKRYNXXXXXXXXXXLCSLWAEYLKDPDWHPFKVVX--XXXXXXXXX 80
MGE+ PF++AM+++Y + LW Y+ DPDWHP+K V
Sbjct: 338 MGELVRKPFVDAMQQKYCQEDVEDRAVEVLQLWEHYINDPDWHPYKRVKLENQDREVEVI 397
Query: 81 XXXXXXLNGLKNDIGEGAYKAVVTALTEINEYNPSGRYITSELWNYEEGRRATLKEGAQV 140
L LK D+G+G Y AV AL EINEYNPSGRYIT+ELWN++E +RATL+EG
Sbjct: 398 DDRDEKLRELKADLGDGPYNAVTKALLEINEYNPSGRYITTELWNFKEDKRATLEEGVTC 457
Query: 141 LLKHWEMVKSKRGM 154
LL WE K KRGM
Sbjct: 458 LLDQWEKAKRKRGM 471
>AT1G13790.1 | Symbols: | XH/XS domain-containing protein |
chr1:4727438-4730229 FORWARD LENGTH=736
Length = 736
Score = 120 bits (301), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 81/142 (57%)
Query: 4 SLLQYIKETSFRSYIKLKRMGEMDTGPFLEAMKKRYNXXXXXXXXXXLCSLWAEYLKDPD 63
+L++ ++E + R+YI +KRMG +D PF + K++Y LCSLW E+L D
Sbjct: 585 ALIRSMRELTTRAYIGVKRMGALDETPFKKVAKEKYPAVEADKKAEELCSLWEEHLGDSA 644
Query: 64 WHPFKVVXXXXXXXXXXXXXXXXLNGLKNDIGEGAYKAVVTALTEINEYNPSGRYITSEL 123
WHP KVV L L+ ++GE Y AV AL E NEYN SGRYI EL
Sbjct: 645 WHPIKVVEKDGIAKEELNEEDEKLQELRKELGEEVYAAVTQALKERNEYNGSGRYIVPEL 704
Query: 124 WNYEEGRRATLKEGAQVLLKHW 145
WN+++ R+A++KEG L+ W
Sbjct: 705 WNFKQNRKASIKEGVVYLVNSW 726
>AT1G15910.1 | Symbols: | XH/XS domain-containing protein |
chr1:5465951-5468723 FORWARD LENGTH=634
Length = 634
Score = 113 bits (283), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 75/135 (55%)
Query: 18 IKLKRMGEMDTGPFLEAMKKRYNXXXXXXXXXXLCSLWAEYLKDPDWHPFKVVXXXXXXX 77
I +KRMGE+D PFL+ K RY+ LCS W E LK+P W PFK
Sbjct: 499 IGVKRMGELDEKPFLDVCKLRYSANEAAVEAATLCSTWQENLKNPSWQPFKHEGTGDGAE 558
Query: 78 XXXXXXXXXLNGLKNDIGEGAYKAVVTALTEINEYNPSGRYITSELWNYEEGRRATLKEG 137
L LK + G+ + AV TAL E+NEYN SGRY T ELWN++EGR+ATLKE
Sbjct: 559 EVVDEDDEQLKKLKREWGKEVHNAVKTALVEMNEYNASGRYTTPELWNFKEGRKATLKEV 618
Query: 138 AQVLLKHWEMVKSKR 152
+ +++K KR
Sbjct: 619 ITFISNDIKILKRKR 633
>AT4G00380.1 | Symbols: | XH/XS domain-containing protein |
chr4:167959-170448 FORWARD LENGTH=635
Length = 635
Score = 112 bits (279), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 75/137 (54%)
Query: 16 SYIKLKRMGEMDTGPFLEAMKKRYNXXXXXXXXXXLCSLWAEYLKDPDWHPFKVVXXXXX 75
S I +KRMGE+D PFL+ K RY+ LCS W E LK+P W PFK
Sbjct: 498 SDIGVKRMGELDEKPFLDVCKLRYSANEARVEAATLCSTWKENLKNPSWQPFKREGTGDG 557
Query: 76 XXXXXXXXXXXLNGLKNDIGEGAYKAVVTALTEINEYNPSGRYITSELWNYEEGRRATLK 135
L LK + G+ + AV AL E+NEYN SGRY TSELWN++EGR+ATLK
Sbjct: 558 AEEVVDEDDEQLKKLKREWGKEVHNAVKAALVEMNEYNASGRYPTSELWNFKEGRKATLK 617
Query: 136 EGAQVLLKHWEMVKSKR 152
E + + +K KR
Sbjct: 618 EVITFISTDIKNLKRKR 634
>AT1G80790.1 | Symbols: | XH/XS domain-containing protein |
chr1:30360280-30362856 FORWARD LENGTH=634
Length = 634
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 76/143 (53%), Gaps = 1/143 (0%)
Query: 12 TSFRSYIKLKRMGEMDTGPFLEAMKKRYNXXXXXXXX-XXLCSLWAEYLKDPDWHPFKVV 70
S R+ I++KRMGE++ PF+ A ++R LCS W E +KD W PFK V
Sbjct: 492 VSDRNIIRVKRMGELEEKPFMTACRQRCTVEEEAQVQYAMLCSKWQEKVKDSAWQPFKHV 551
Query: 71 XXXXXXXXXXXXXXXXLNGLKNDIGEGAYKAVVTALTEINEYNPSGRYITSELWNYEEGR 130
+ L+ + GE AV TAL E+NE+NPSGRY ELWN ++GR
Sbjct: 552 GTGDRKKEVVDEEDEEIKKLREEWGEEVKNAVKTALEELNEFNPSGRYSVPELWNSKQGR 611
Query: 131 RATLKEGAQVLLKHWEMVKSKRG 153
+ATLKE + + + +K +R
Sbjct: 612 KATLKEVIDYITQQVKTLKRRRA 634
>AT3G29375.1 | Symbols: | XH domain-containing protein |
chr3:11280151-11281829 FORWARD LENGTH=355
Length = 355
Score = 97.8 bits (242), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 75/143 (52%), Gaps = 5/143 (3%)
Query: 12 TSFRSYIKLKRMGEMDTGPFLEAMKKRYNXXXXXXXXXXLCSLWAEYLKDPDWHPFKVVX 71
T R+ I++KRMG +D PF++A K+R + + W E L+DP W PFK V
Sbjct: 214 TDDRTTIRVKRMGHLDVEPFVKASKRRLTGNDTE-----VYAEWEENLRDPHWQPFKRVE 268
Query: 72 XXXXXXXXXXXXXXXLNGLKNDIGEGAYKAVVTALTEINEYNPSGRYITSELWNYEEGRR 131
L L+ + GE AV TAL E+NE+NPSGR++ LWN E+GR
Sbjct: 269 TGNIVKEVVDEEDEKLKNLREEWGEEVMNAVKTALEEVNEFNPSGRHVVPTLWNSEQGRV 328
Query: 132 ATLKEGAQVLLKHWEMVKSKRGM 154
ATL+E + + +K K+ +
Sbjct: 329 ATLREVIAHMTHEIKTLKRKKNL 351
>AT5G59390.1 | Symbols: | XH/XS domain-containing protein |
chr5:23954934-23957151 FORWARD LENGTH=561
Length = 561
Score = 95.1 bits (235), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 71/140 (50%), Gaps = 6/140 (4%)
Query: 18 IKLKRMGEMDTGPFLEAMKKRY--NXXXXXXXXXXLCSLWAEYLKDPDWHPFKVVXXXXX 75
I++KRMG+++ PFL A+ K++ LCS+W + D W PF+V
Sbjct: 417 IRVKRMGQLNPAPFLPAVMKKHKVTQSKAENKAMKLCSVWEANIGDVQWTPFRVDESDGT 476
Query: 76 XXXXXXXXXXXLNGLKNDIGEGAYKAVVTALTEINEYNPSGRYITSELWNYEEGRRATLK 135
L LKN GE Y VV EI E+N SG Y+ ELWNYEE R+AT++
Sbjct: 477 PKRVVDENDEKLRTLKNQYGEEVYNEVVRTKLEIEEHNASGSYVILELWNYEENRKATME 536
Query: 136 EGAQVLLKHWEMVKSKRGMM 155
E V+LK ++SK M
Sbjct: 537 EATDVMLK----IRSKLAAM 552
>AT4G01180.1 | Symbols: | XH/XS domain-containing protein |
chr4:501287-503394 REVERSE LENGTH=554
Length = 554
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 66/140 (47%), Gaps = 21/140 (15%)
Query: 18 IKLKRMGEMDTGPFLEAMKKRYNXXXXXXXXXXLCSLWAEYLKDPDWHPFKV-------- 69
I++K MGE++ PFL A+ ++ LCS+WA + D W PF+V
Sbjct: 407 IRVKIMGELNPAPFLPAVMNKH-------KAMMLCSVWAAEIGDVQWTPFRVDESDGTPK 459
Query: 70 ------VXXXXXXXXXXXXXXXXLNGLKNDIGEGAYKAVVTALTEINEYNPSGRYITSEL 123
L LKN GE Y VV A E+ E+N SG Y T EL
Sbjct: 460 QKLHISQHSKCEMQRVVDENDEKLRMLKNQYGEEVYSEVVRAKLEMEEHNASGSYETEEL 519
Query: 124 WNYEEGRRATLKEGAQVLLK 143
WNYEE R+AT++E V+LK
Sbjct: 520 WNYEENRKATIEEITDVMLK 539
>AT2G16490.1 | Symbols: | XH domain-containing protein |
chr2:7146000-7147296 REVERSE LENGTH=179
Length = 179
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%)
Query: 87 LNGLKNDIGEGAYKAVVTALTEINEYNPSGRYITSELWNYEEGRRATLKEGAQVLLKHWE 146
L LK GE + + + +++EYN G+Y T ELWN+++ ++TLKE + LL +
Sbjct: 83 LKKLKEKWGEDVHNTLKITIKDMDEYNACGKYPTPELWNFKKKLKSTLKEVIKFLLNDIK 142
Query: 147 MVKSKR 152
+K +R
Sbjct: 143 SLKRQR 148