Miyakogusa Predicted Gene
- Lj0g3v0240829.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0240829.1 tr|Q2HS67|Q2HS67_MEDTR Cyclin-like F-box; F-box
protein interaction domain OS=Medicago truncatula
GN,30.81,3e-39,FBA_1,F-box associated domain, type 1; F-box,F-box
domain, cyclin-like; FBOX,F-box domain, cyclin-li,gene.g18844.t1.1
(401 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G23880.1 | Symbols: | F-box and associated interaction domai... 92 5e-19
AT1G71320.1 | Symbols: | F-box family protein | chr1:26882485-2... 77 3e-14
AT3G06240.1 | Symbols: | F-box family protein | chr3:1887336-18... 71 2e-12
AT5G10340.1 | Symbols: | F-box family protein | chr5:3253122-32... 66 4e-11
AT4G12560.2 | Symbols: CPR30 | F-box and associated interaction ... 60 4e-09
AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction ... 60 4e-09
AT3G51171.1 | Symbols: | F-box and associated interaction domai... 53 4e-07
AT1G12870.1 | Symbols: | F-box and associated interaction domai... 50 2e-06
>AT3G23880.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr3:8622061-8623155
REVERSE LENGTH=364
Length = 364
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 97/346 (28%), Positives = 147/346 (42%), Gaps = 69/346 (19%)
Query: 2 DILSRLSVKSLMRFKLVCKSFNSLISSTYFVKLH--LRQSSAPNANPLVIFFPPYNDADH 59
+IL RL VKSL RFK VC S+ SLIS T F H + ++S + + H
Sbjct: 21 EILLRLPVKSLTRFKCVCSSWRSLISETLFALKHALILETSKATTSTKSPYGVITTSRYH 80
Query: 60 ISSLHVKSFLKTPPPTVAEEVQFLRSNWKDRYLTIGSCDGLVCMIGTQDTSDEQQLFWVC 119
+ S + S V+E L +D Y +G+C GLVC D S +
Sbjct: 81 LKSCCIHSLYNASTVYVSEHDGELLG--RDYYQVVGTCHGLVCFHVDYDKS-------LY 131
Query: 120 FWNPAMKSTSQKMFQAMKSTSQMFQAMKSTSQKMFQTMPPNDDELSYLFVYCGFGYDYVS 179
WNP +K Q S+S + +DDE + GFGYD
Sbjct: 132 LWNPTIK------LQQRLSSSD---------------LETSDDECVVTY---GFGYDESE 167
Query: 180 DTYKVLVLMRNQYAM-----VFNMGGNSWRCVGCFPPDLTPIEEGKNIFGVHLNGTLNWI 234
D YKV+ L++ ++ + +++ WR FP + ++ ++ G+++NGTLNW
Sbjct: 168 DDYKVVALLQQRHQVKIETKIYSTRQKLWRSNTSFPSGVVVADKSRS--GIYINGTLNWA 225
Query: 235 VINKINENNYVGNNEWVDFDSEWDNFEWDNGSCMILSFDLNKEEFVRLVLPDTPHK-FRS 293
+ + I+S+D++++EF L P + +
Sbjct: 226 ATSSSSSW-------------------------TIISYDMSRDEFKELPGPVCCGRGCFT 260
Query: 294 PHLGVLDECLC-VSHNDGENFVIWQMKKFGIHESWTKLLSISNDKD 338
LG L CL V + G N +W MK+FG SW+KLLSI D
Sbjct: 261 MTLGDLRGCLSMVCYCKGANADVWVMKEFGEVYSWSKLLSIPGLTD 306
>AT1G71320.1 | Symbols: | F-box family protein |
chr1:26882485-26883818 FORWARD LENGTH=392
Length = 392
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 90/359 (25%), Positives = 152/359 (42%), Gaps = 66/359 (18%)
Query: 3 ILSRLSVKSLMRFKLVCKSFNSLISSTYFVKLHLRQSSAPNANPLVIFFPPYNDADHISS 62
I L +KSL RFK++ K + S+I STYF L ++ P N + HIS
Sbjct: 22 IFHHLPIKSLARFKVLSKKWTSMIESTYFSHKRLIRTGLPTPNMKFL---------HISQ 72
Query: 63 LHVKSFLKTPPPTVAEEVQ-FLRSNWKDRYL----------TIGSCDGLVCMIGTQDTSD 111
+F++ ++ ++ F R + +R +GSCDGLV + D
Sbjct: 73 HFTANFVEEYSNSITFLLETFSRDDQNNRKTFDESQNKTIQVLGSCDGLVLLRIHDDFRS 132
Query: 112 EQQLFWVCFWNPAMKS---TSQKMFQAMKSTSQMFQAMKSTS-QKMFQTMPPNDDELSYL 167
+ NP K S + Q + S + AM + +++ Q++ D + +
Sbjct: 133 ------IYLINPTTKEHMKLSPEFMQWPFTLSYLTPAMANKPWRQLSQSVLDYDISVKRM 186
Query: 168 FVYCGFGYDYVSDTYKVLVLMRNQY--------AMVFNMGGNSWRCVGCFPPDLTPIEEG 219
GFG D V +YKV VL+ +Y A V ++ R VG + D+
Sbjct: 187 PSLAGFGKDIVKKSYKV-VLIYTRYEIHDHEFKAKVLSLDNGEQRDVGFY--DIHHCIFC 243
Query: 220 KNIFGVHLNGTLNWIVINKINENNYVGNNEWVDFDSEWDNFEWDNGSCMILSFDLNKEEF 279
V+ NG+L W+ + K+++ +Y +L+ DL+ EEF
Sbjct: 244 DEQTSVYANGSLFWLTLKKLSQTSY-----------------------QLLAIDLHTEEF 280
Query: 280 VRLVLPDTPHKFRSP-HLGVLDECLCVSHN-DGENFVIWQMKKFGIHESWTKLLSISND 336
++LP+ K+ + + L+E LC+S + N V+W + + E W K+ SI D
Sbjct: 281 RWILLPECDTKYATNIEMWNLNERLCLSDVLESSNLVVWSLHQEYPTEKWEKIYSIKID 339
>AT3G06240.1 | Symbols: | F-box family protein |
chr3:1887336-1888619 FORWARD LENGTH=427
Length = 427
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 86/377 (22%), Positives = 151/377 (40%), Gaps = 112/377 (29%)
Query: 2 DILSRLSVKSLMRFKLVCKSFNSLISSTYFVKLHL-------------RQSSAPNANPLV 48
+IL RL KS+ RF+ V K F +L S F K+HL R+ + N
Sbjct: 43 EILLRLPAKSIGRFRCVSKLFCTLSSDPGFAKIHLDLILRNESVRSLHRKLIVSSHNLYS 102
Query: 49 IFFPPYNDA-DHISSLHVKSFLKTPPPTVAEEVQ--------------------FLRSNW 87
+ F D ++++ LK P +E ++ R NW
Sbjct: 103 LDFNSIGDGIRDLAAVEHNYPLKDDPSIFSEMIRNYVGDHLYDDRRVMLKLNAKSYRRNW 162
Query: 88 KDRYLTIGSCDGLVCMIGTQDTSDEQQLFWVCFWNPAMKSTSQKMFQAMKSTSQMFQAMK 147
+ +GS +GLVC+ + E +F +NP S+++ + + S ++
Sbjct: 163 VE---IVGSSNGLVCI-----SPGEGAVF---LYNPTT-GDSKRLPENFRPKSVEYE--- 207
Query: 148 STSQKMFQTMPPNDDELSYLFVYCGFGYDYVSDTYKVLVLMRNQY----AMVFNMGGNSW 203
+ FQT GFG+D ++D YK++ L+ A V+++ +SW
Sbjct: 208 ---RDNFQTY--------------GFGFDGLTDDYKLVKLVATSEDILDASVYSLKADSW 250
Query: 204 RCVGCFPPDLTPIEEGKNIFGVHLNGTLNWIVINKINENNYVGNNEWVDFDSEWDNFEWD 263
R + + +G GVH NG ++W+ E
Sbjct: 251 RRICNLNYEHN---DGSYTSGVHFNGAIHWVFT------------------------ESR 283
Query: 264 NGSCMILSFDLNKEEFVRLVLPDTP----HKFRSPHLGVLDECLCV------SHNDGENF 313
+ ++++FD+ EEF + +PD H+F + +G L+ LCV H+D
Sbjct: 284 HNQRVVVAFDIQTEEFREMPVPDEAEDCSHRFSNFVVGSLNGRLCVVNSCYDVHDD---- 339
Query: 314 VIWQMKKFGIHESWTKL 330
IW M ++G +SW+++
Sbjct: 340 -IWVMSEYGEAKSWSRI 355
>AT5G10340.1 | Symbols: | F-box family protein |
chr5:3253122-3255045 FORWARD LENGTH=445
Length = 445
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 93/359 (25%), Positives = 142/359 (39%), Gaps = 90/359 (25%)
Query: 3 ILSRLSVKSLMRFKLVCKSFNSLISSTYFVKL----HLRQSSAPNANPLVIFFPP--YND 56
I+ RL VK+L++FK V K + S I S F + HL QSS LV + P
Sbjct: 78 IMVRLDVKTLLKFKSVSKQWMSTIQSPSFQERQLIHHLSQSSGDPHVLLVSLYDPCARQQ 137
Query: 57 ADHISSLH-VKSFLKTPPPTVAEEVQFLRSNWKDR--YLTIGSCDGLVCMIGTQDTSDEQ 113
ISS +++FL + A VQ + + W+D+ ++ SCDGL+C+ +
Sbjct: 138 DPSISSFEALRTFLVE---SSAASVQ-IPTPWEDKLYFVCNTSCDGLICLFSFYELP--- 190
Query: 114 QLFWVCFWNPAMKSTSQKMFQAMKSTSQMFQAMKSTSQKMFQTMPPNDDELSYLFVYCGF 173
+ + T++ K Q+ A K + F+ P GF
Sbjct: 191 --------SIVVNPTTRWHRTFPKCNYQLVAADKGERHECFKVACPTP----------GF 232
Query: 174 GYDYVSDTYKVLVLM---------RNQYAMVFNMGGNSWRCVGCFPPDLTPIEEGKNIFG 224
G D +S TYK + L + VF+ N+WR V FP I ++
Sbjct: 233 GKDKISGTYKPVWLYNSAELDLNDKPTTCEVFDFATNAWRYV--FPASPHLILHTQD--P 288
Query: 225 VHLNGTLNWIVINKINENNYVGNNEWVDFDSEWDNFEWDNGSCMILSFDLNKEEFVRLVL 284
V+++G+L+W G M+LS DL+ E F +
Sbjct: 289 VYVDGSLHWFTALS------------------------HEGETMVLSLDLHSETFQVIS- 323
Query: 285 PDTPHKFRSPHLGVLDE-----C-----LCVSHNDGENFVIWQMKKFGIHESWTKLLSI 333
++P L V DE C LCVS N VIW + H++W ++ SI
Sbjct: 324 -------KAPFLNVSDEYYIVMCNLGDRLCVSEQKWPNQVIWSLDD-SDHKTWKQIYSI 374
>AT4G12560.2 | Symbols: CPR30 | F-box and associated interaction
domains-containing protein | chr4:7441815-7443157
FORWARD LENGTH=413
Length = 413
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 81/372 (21%), Positives = 148/372 (39%), Gaps = 105/372 (28%)
Query: 2 DILSRLSVKSLMRFKLVCKSFNSLISSTYFVKLHLRQSSAPNANPLVIFFPPYN----DA 57
DI RL K+L+R + + K LI+ F++ HL + + +++ D
Sbjct: 11 DIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMILLRGALRLYSVDL 70
Query: 58 DHISSLH-VKSFLKTPPPTVAEEVQFLRSNWKDRYLTIGSCDGLVCMIGTQDTSDEQQLF 116
D + S+ V+ +K PT EV GS +GL IG ++ + +F
Sbjct: 71 DSLDSVSDVEHPMKRGGPT---EV-------------FGSSNGL---IGLSNSPTDLAVF 111
Query: 117 WVCFWNPAMKSTSQKMFQAMKSTSQMFQAMKSTSQKMFQTMPPNDDEL-----SYLFVYC 171
NP S + +PP+ +L + +V+
Sbjct: 112 -----NP--------------------------STRQIHRLPPSSIDLPDGSSTRGYVFY 140
Query: 172 GFGYDYVSDTYKVLVLMRNQY-------------AMVFNMGGNSWRCVGCFPPDLTPI-- 216
G GYD VSD YKV+ +++ + VF++ NSW+ + + +
Sbjct: 141 GLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKVFSLKKNSWKRIESVASSIQLLFY 200
Query: 217 ----EEGKNIFGVHLNGTLNWIVINKINENNYVGNNEWVDFDSEWDNFEWDNGSCMILSF 272
+ +GV +L+W++ + + F+ +I+ F
Sbjct: 201 FYYHLLYRRGYGVLAGNSLHWVLPRRPG---------LIAFN-------------LIVRF 238
Query: 273 DLNKEEFVRLVLPDTPHKFR---SPHLGVLDECLCVSHNDGENFV-IWQMKKFGIHESWT 328
DL EEF + P+ +GVLD CLC+ N +++V +W MK++ + +SWT
Sbjct: 239 DLALEEFEIVRFPEAVANGNVDIQMDIGVLDGCLCLMCNYDQSYVDVWMMKEYNVRDSWT 298
Query: 329 KLLSISNDKDLE 340
K+ ++ K ++
Sbjct: 299 KVFTVQKPKSVK 310
>AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction
domains-containing protein | chr4:7441815-7443157
FORWARD LENGTH=413
Length = 413
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 81/372 (21%), Positives = 148/372 (39%), Gaps = 105/372 (28%)
Query: 2 DILSRLSVKSLMRFKLVCKSFNSLISSTYFVKLHLRQSSAPNANPLVIFFPPYN----DA 57
DI RL K+L+R + + K LI+ F++ HL + + +++ D
Sbjct: 11 DIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMILLRGALRLYSVDL 70
Query: 58 DHISSLH-VKSFLKTPPPTVAEEVQFLRSNWKDRYLTIGSCDGLVCMIGTQDTSDEQQLF 116
D + S+ V+ +K PT EV GS +GL IG ++ + +F
Sbjct: 71 DSLDSVSDVEHPMKRGGPT---EV-------------FGSSNGL---IGLSNSPTDLAVF 111
Query: 117 WVCFWNPAMKSTSQKMFQAMKSTSQMFQAMKSTSQKMFQTMPPNDDEL-----SYLFVYC 171
NP S + +PP+ +L + +V+
Sbjct: 112 -----NP--------------------------STRQIHRLPPSSIDLPDGSSTRGYVFY 140
Query: 172 GFGYDYVSDTYKVLVLMRNQY-------------AMVFNMGGNSWRCVGCFPPDLTPI-- 216
G GYD VSD YKV+ +++ + VF++ NSW+ + + +
Sbjct: 141 GLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKVFSLKKNSWKRIESVASSIQLLFY 200
Query: 217 ----EEGKNIFGVHLNGTLNWIVINKINENNYVGNNEWVDFDSEWDNFEWDNGSCMILSF 272
+ +GV +L+W++ + + F+ +I+ F
Sbjct: 201 FYYHLLYRRGYGVLAGNSLHWVLPRRPG---------LIAFN-------------LIVRF 238
Query: 273 DLNKEEFVRLVLPDTPHKFR---SPHLGVLDECLCVSHNDGENFV-IWQMKKFGIHESWT 328
DL EEF + P+ +GVLD CLC+ N +++V +W MK++ + +SWT
Sbjct: 239 DLALEEFEIVRFPEAVANGNVDIQMDIGVLDGCLCLMCNYDQSYVDVWMMKEYNVRDSWT 298
Query: 329 KLLSISNDKDLE 340
K+ ++ K ++
Sbjct: 299 KVFTVQKPKSVK 310
>AT3G51171.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr3:19010856-19011626
FORWARD LENGTH=256
Length = 256
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 93/252 (36%), Gaps = 69/252 (27%)
Query: 2 DILSRLSVKSLMRFKLVCKSFNSLISSTYFVKLHLRQSSAPNANPLVIFFPPYNDADHIS 61
DILSRL+ +SL+RF+ VCK +N L F+K H + A P IF N I
Sbjct: 11 DILSRLAAQSLVRFRSVCKRWNYLFDEKSFIKNHFAR-----ACPQFIFMTDSN----IY 61
Query: 62 SLHVKSFLKTPPPT---VAEEVQFLRSNWKDRYLTIGSCDG-LVCMIGTQDTSDEQQLFW 117
S+ + P V + +WK Y+TI +CDG L C
Sbjct: 62 SIEIIGLDGVDPTIKLRVLDSSGIPYRDWKFAYITITACDGFLFCNSWASPKG------- 114
Query: 118 VCFWNPAMKSTSQKMFQAMKSTSQMFQAMKSTSQKMFQTMPPNDDELSYLFVYCGFGYDY 177
FWNP +K ++ K F CG GYD
Sbjct: 115 TAFWNPWLKQVKWIEYE----------------DKGFNV--------------CGLGYDN 144
Query: 178 VSD--TYKVLVLMR-----------NQYAMVFNMGGNSWRCVGCFPPD--LTPIEEGKNI 222
D YK+L + +Q +++ ++++ + D LT +
Sbjct: 145 TRDGKVYKILGYLMCRPEDGSSYVYHQRVAIYDCASHAFKFIEISNKDWFLTDVTR---- 200
Query: 223 FGVHLNGTLNWI 234
F V LNG L W+
Sbjct: 201 FSVSLNGNLYWL 212
>AT1G12870.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr1:4387129-4389110
REVERSE LENGTH=416
Length = 416
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 80/348 (22%), Positives = 130/348 (37%), Gaps = 76/348 (21%)
Query: 2 DILSRLSVKSLMRFKLVCKSFNSLISSTYFVKLHLR--QSSAPNANPLVIFFPPYNDADH 59
+I +L VK+LMRFK + K + S + S YF + HL+ + S + ++I +N
Sbjct: 40 EIFLKLPVKALMRFKSLSKQWRSTLESCYFSQRHLKIAERSHVDHPKVMIITEKWNPDIE 99
Query: 60 IS----SLHVKSFLKTPPPTVAEEVQFLRSNWKDRYLTIGSCDGLVCMIGTQDTSDEQQL 115
IS SL SFL + F R Y + SCDG+ C+ + Q +
Sbjct: 100 ISFRTISLESVSFLSS------ALFNFPRGFHHPIYAS-ESCDGIFCI----HSPKTQDI 148
Query: 116 FWVCFWNPAMKSTSQKMFQAMKSTSQMFQAMKSTSQKMFQTMPPNDDELSYLFVYCGFGY 175
+ V NPA T Q + Q + P D L + +
Sbjct: 149 YVV---NPA--------------TRWFRQLPPARFQIFMHKLNPTLDTLRDMIPVNHLAF 191
Query: 176 DYVSDTYKVLVLM-----RNQYAMVFNMGGNSWRCVGCFPPDLTPIEEGKNIFGVHLNGT 230
+D YK++ L R VF+ N+WR + C P ++ NGT
Sbjct: 192 VKATD-YKLVWLYNSDASRVTKCEVFDFKANAWRYLTCIPSYRIYHDQK----PASANGT 246
Query: 231 LNWIVINKINENNYVGNNEWVDFDSEWDNFEWDNGSCMILSFDLNKEEFVRLVLPDTPHK 290
L W E N +++ D++ E F L P
Sbjct: 247 LYWFT-------------------------ETYNAEIKVIALDIHTEIFRLLPKPSLIAS 281
Query: 291 FRSPHLG--VLDECLCVSHNDGENFV---IWQMKKFGIHESWTKLLSI 333
H+ ++D LC+ +G+ + IW++K ++W K+ +I
Sbjct: 282 SEPSHIDMCIIDNSLCMYETEGDKKIIQEIWRLK--SSEDAWEKIYTI 327