Miyakogusa Predicted Gene

Lj0g3v0240409.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0240409.2 Non Chatacterized Hit- tr|I3SXG7|I3SXG7_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,97.91,0,no
description,Nucleotide-binding, alpha-beta plait; RRM_1,RNA
recognition motif domain; SMALL NUCLE,CUFF.15734.2
         (251 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21320.2 | Symbols:  | nucleotide binding;nucleic acid bindin...   236   7e-63
AT1G76940.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   224   6e-59
AT1G21320.1 | Symbols:  | nucleotide binding;nucleic acid bindin...   216   8e-57
AT1G76940.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   167   4e-42
AT2G47580.1 | Symbols: U1A | spliceosomal protein U1A | chr2:195...    51   6e-07
AT2G30260.1 | Symbols: U2B'' | U2 small nuclear ribonucleoprotei...    47   9e-06

>AT1G21320.2 | Symbols:  | nucleotide binding;nucleic acid binding |
           chr1:7462834-7466164 REVERSE LENGTH=253
          Length = 253

 Score =  236 bits (603), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 137/258 (53%), Positives = 167/258 (64%), Gaps = 13/258 (5%)

Query: 1   MADGYWNRQQAHM------PHSGMLKRPRSDYDMPASGLSSGNDINNYIVRDDDRTGPRM 54
           MAD YWN+Q+ +       PH    KRPRSD+      + SG D+++Y+ +D+DR  P  
Sbjct: 1   MADEYWNQQRQYQLPISSNPHVLPPKRPRSDFQGTPYLIPSG-DMHSYLSQDEDRGIPHS 59

Query: 55  LRDTKTIGSAYDRYLQSGQLSAYTSGEASTIXXXXXXXXXXXXXXHSLADHAAMGRHGGG 114
           ++DT++IGSAYDRYLQS Q     S EA                    +    M   GG 
Sbjct: 60  VKDTRSIGSAYDRYLQSMQTFFVPSEEAGPFNGVGMVRQGGSNMMPGPSMGELMAGCGGS 119

Query: 115 GP-DIAPNGRGFNYGGQPPVDSVSRPGHETVPLPPDASSTLYVEGLPSDSTKREVAHIFR 173
            P D  PNGR   +G    +DSV RPG E  PLPPD S+TLYVEGLPS+ ++REV+HIFR
Sbjct: 120 LPSDFRPNGRDMGFGQ---LDSVGRPGREPHPLPPDVSNTLYVEGLPSNCSRREVSHIFR 176

Query: 174 PFVGYREVRLVTKESKHRGGDPLILCFVDFENPACAATALSALQGYKVDELDPESGHLRL 233
           PFVGYREVRLVT++SKHR GDP +LCFVDFEN ACAATALSALQ Y++DE +P+S  LRL
Sbjct: 177 PFVGYREVRLVTQDSKHRSGDPTVLCFVDFENSACAATALSALQDYRMDEDEPDSKILRL 236

Query: 234 QFSRYPGPRSGPGFRGKR 251
           QF R PGPR  PG RG R
Sbjct: 237 QFFRNPGPR--PGQRGGR 252


>AT1G76940.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:28902707-28904085 REVERSE LENGTH=233
          Length = 233

 Score =  224 bits (570), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 136/253 (53%), Positives = 163/253 (64%), Gaps = 22/253 (8%)

Query: 1   MADGYWNRQ-QAHMPHSGMLKRPRSDYDMPASGLSSGNDINNYIVRDDDRTGPRMLRDTK 59
           MADGYWN+Q Q H P  G +KRPRSD++ P+S ++ G+    Y  RD+D   P    DT+
Sbjct: 1   MADGYWNQQRQQHHPPGGPMKRPRSDFEAPSSTMTIGHG-GGYYPRDEDLDVP----DTR 55

Query: 60  TIGSAYDRYLQSGQLSAYTSGEASTIXXXXXXXXXXXXXXHSLADHAAMGRHGGGGP-DI 118
           TIGSAYDRYLQS Q     SGE  ++              +       M R GG  P D 
Sbjct: 56  TIGSAYDRYLQSVQ-----SGEGGSVSMGRSGGGGGGGGGNVQTIDDFMLRRGGVLPLDH 110

Query: 119 APNGRGFNYGGQPPVDSVSRPGHETVPLPPDASSTLYVEGLPSDSTKREVAHIFRPFVGY 178
            PNG    +    PV   +        LP DAS+TLYVEGLPS+ ++REVAHIFRPFVGY
Sbjct: 111 GPNGHTIGFDPPEPVGRRN--------LPSDASNTLYVEGLPSNCSRREVAHIFRPFVGY 162

Query: 179 REVRLVTKESKHRGGDPLILCFVDFENPACAATALSALQGYKVDELDPESGHLRLQFSRY 238
           REVRLVTK+SKHR GDP++LCFVDF NPACAATALSALQGY++DE + +S  LRLQFSR 
Sbjct: 163 REVRLVTKDSKHRNGDPIVLCFVDFTNPACAATALSALQGYRMDENESDSKFLRLQFSRK 222

Query: 239 PGPRSGPGFRGKR 251
           PG R  PG RG+R
Sbjct: 223 PGSR--PGQRGRR 233


>AT1G21320.1 | Symbols:  | nucleotide binding;nucleic acid binding |
           chr1:7462834-7465200 REVERSE LENGTH=421
          Length = 421

 Score =  216 bits (551), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 120/215 (55%), Positives = 145/215 (67%), Gaps = 6/215 (2%)

Query: 38  DINNYIVRDDDRTGPRMLRDTKTIGSAYDRYLQSGQLSAYTSGEASTIXXXXXXXXXXXX 97
           D+++Y+ +D+DR  P  ++DT++IGSAYDRYLQS Q     S EA               
Sbjct: 211 DMHSYLSQDEDRGIPHSVKDTRSIGSAYDRYLQSMQTFFVPSEEAGPFNGVGMVRQGGSN 270

Query: 98  XXHSLADHAAMGRHGGGGP-DIAPNGRGFNYGGQPPVDSVSRPGHETVPLPPDASSTLYV 156
                +    M   GG  P D  PNGR   +G    +DSV RPG E  PLPPD S+TLYV
Sbjct: 271 MMPGPSMGELMAGCGGSLPSDFRPNGRDMGFGQ---LDSVGRPGREPHPLPPDVSNTLYV 327

Query: 157 EGLPSDSTKREVAHIFRPFVGYREVRLVTKESKHRGGDPLILCFVDFENPACAATALSAL 216
           EGLPS+ ++REV+HIFRPFVGYREVRLVT++SKHR GDP +LCFVDFEN ACAATALSAL
Sbjct: 328 EGLPSNCSRREVSHIFRPFVGYREVRLVTQDSKHRSGDPTVLCFVDFENSACAATALSAL 387

Query: 217 QGYKVDELDPESGHLRLQFSRYPGPRSGPGFRGKR 251
           Q Y++DE +P+S  LRLQF R PGPR  PG RG R
Sbjct: 388 QDYRMDEDEPDSKILRLQFFRNPGPR--PGQRGGR 420


>AT1G76940.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:28902707-28904085 REVERSE LENGTH=179
          Length = 179

 Score =  167 bits (424), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 92/145 (63%), Positives = 106/145 (73%), Gaps = 11/145 (7%)

Query: 108 MGRHGGGGP-DIAPNGRGFNYGGQPPVDSVSRPGHETVPLPPDASSTLYVEGLPSDSTKR 166
           M R GG  P D  PNG    +    PV   +        LP DAS+TLYVEGLPS+ ++R
Sbjct: 45  MLRRGGVLPLDHGPNGHTIGFDPPEPVGRRN--------LPSDASNTLYVEGLPSNCSRR 96

Query: 167 EVAHIFRPFVGYREVRLVTKESKHRGGDPLILCFVDFENPACAATALSALQGYKVDELDP 226
           EVAHIFRPFVGYREVRLVTK+SKHR GDP++LCFVDF NPACAATALSALQGY++DE + 
Sbjct: 97  EVAHIFRPFVGYREVRLVTKDSKHRNGDPIVLCFVDFTNPACAATALSALQGYRMDENES 156

Query: 227 ESGHLRLQFSRYPGPRSGPGFRGKR 251
           +S  LRLQFSR PG R  PG RG+R
Sbjct: 157 DSKFLRLQFSRKPGSR--PGQRGRR 179


>AT2G47580.1 | Symbols: U1A | spliceosomal protein U1A |
           chr2:19517229-19518686 FORWARD LENGTH=250
          Length = 250

 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 15/102 (14%)

Query: 127 YGGQPPVDSVSRPG-----HETVPLPPDASSTLYVEGLPSDSTKREVAHIFRPFVGYREV 181
           YG  PP+  V  PG         P PP+  + L+V+ LP ++T   +  +F  + G++EV
Sbjct: 149 YGAAPPLSQVPYPGGMKPNMPEAPAPPN--NILFVQNLPHETTPMVLQMLFCQYQGFKEV 206

Query: 182 RLVTKESKHRGGDPLILCFVDFENPACAATALSALQGYKVDE 223
           R++    + + G    + FV+F +   +  A+  LQG+K+ +
Sbjct: 207 RMI----EAKPG----IAFVEFADEMQSTVAMQGLQGFKIQQ 240


>AT2G30260.1 | Symbols: U2B'' | U2 small nuclear ribonucleoprotein B
           | chr2:12905557-12907434 REVERSE LENGTH=232
          Length = 232

 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 14/106 (13%)

Query: 121 NGRGFNYGGQPPVDSVSRPGHETVPLPPDASSTLYVEGLPSDSTKREVAHIFRPFVGYRE 180
           NG   N G   P  S    G ET+P     ++ L+++ LP ++T   +  +F  + G++E
Sbjct: 133 NGPSANNGV--PAPSFQPSGQETMP----PNNILFIQNLPHETTSMMLQLLFEQYPGFKE 186

Query: 181 VRLVTKESKHRGGDPLILCFVDFENPACAATALSALQGYKVDELDP 226
           +R++  +          + FV++E+   A+ A+  LQG+K+   +P
Sbjct: 187 IRMIDAKPG--------IAFVEYEDDVQASIAMQPLQGFKITPQNP 224