Miyakogusa Predicted Gene
- Lj0g3v0239829.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0239829.1 Non Chatacterized Hit- tr|C5XY05|C5XY05_SORBI
Putative uncharacterized protein Sb04g007380 OS=Sorghu,41.44,3e-19,no
description,NULL; P-loop containing nucleoside triphosphate
hydrolases,NULL; ABC
TRANSPORTER,NULL,NODE_52073_length_418_cov_65.677032.path3.1
(148 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G47780.1 | Symbols: ATATH6, ATH6 | ABC2 homolog 6 | chr3:1762... 187 2e-48
AT5G61700.1 | Symbols: ATATH16, ATH16 | ABC2 homolog 16 | chr5:2... 176 7e-45
AT3G47750.1 | Symbols: ATATH3, ABCA4 | ATP binding cassette subf... 172 5e-44
AT3G47740.1 | Symbols: ATATH2, ATH2, ABCA3 | ABC2 homolog 2 | ch... 162 9e-41
AT3G47770.1 | Symbols: ATATH5, ATH5, ABCA6 | ABC2 homolog 5 | ch... 161 1e-40
AT3G47790.1 | Symbols: ATATH7, ATH7 | ABC2 homolog 7 | chr3:1762... 159 8e-40
AT3G47760.1 | Symbols: ATATH4, ATH4, ABCA5 | ABC2 homolog 4 | ch... 157 3e-39
AT5G61740.1 | Symbols: ATATH14, ATH14 | ABC2 homolog 14 | chr5:2... 153 3e-38
AT2G41700.1 | Symbols: ABCA1, AtABCA1 | ATP-binding cassette A1 ... 65 2e-11
AT2G41700.2 | Symbols: ABCA1, AtABCA1 | ATP-binding cassette A1 ... 62 2e-10
>AT3G47780.1 | Symbols: ATATH6, ATH6 | ABC2 homolog 6 |
chr3:17624500-17628972 FORWARD LENGTH=935
Length = 935
Score = 187 bits (476), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 93/148 (62%), Positives = 114/148 (77%), Gaps = 5/148 (3%)
Query: 1 MRWGDLSDSTNGMKEVFIIIFMEWILALMFAYYMDQVLTSGCGKSHLFFMKEFQKNRSSS 60
M+W D DS M +VF II +EW LAL+ AYY+D++ S G++ LFF++ K +S S
Sbjct: 517 MKWKDFGDS--AMDDVFYIIVVEWFLALIAAYYIDKI--SSSGRNPLFFLQNPFK-KSPS 571
Query: 61 FQKLSFQRQDSKVLVDMEKPDVNQEREKVEQLILEPTTNHAIVCDNLRKVYPARDGNPAK 120
++ S QRQ SKV VDMEKPDV E +KVE+L+LE +T+HAIVCDNL+KVYP RDGNP K
Sbjct: 572 LRRPSLQRQGSKVSVDMEKPDVTHESKKVERLMLESSTSHAIVCDNLKKVYPGRDGNPPK 631
Query: 121 FAVRGLSLALPQGECFGMLGPNGAGKTS 148
AVRGLSLA+P GECFGMLGPNGAGKTS
Sbjct: 632 LAVRGLSLAVPSGECFGMLGPNGAGKTS 659
>AT5G61700.1 | Symbols: ATATH16, ATH16 | ABC2 homolog 16 |
chr5:24793864-24797944 FORWARD LENGTH=888
Length = 888
Score = 176 bits (445), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 91/149 (61%), Positives = 110/149 (73%), Gaps = 5/149 (3%)
Query: 1 MRWGDLSDSTNGMKEVFIIIFMEWILALMFAYYMDQVLTSGCGKSHLFFMKEFQKNRSSS 60
M+W DLSDS GM EVF I+ +EW LAL+ AYY+DQV TSG K FF+ K+ SS
Sbjct: 468 MKWQDLSDS--GMGEVFCIMSVEWFLALIVAYYIDQVFTSG--KHPFFFLVNLFKSPSSL 523
Query: 61 FQKLSFQRQDSK-VLVDMEKPDVNQEREKVEQLILEPTTNHAIVCDNLRKVYPARDGNPA 119
++ + QR DSK V +DM+K DV QERE V++L E +T HAI+CDNL+KVYP RDGNP
Sbjct: 524 PRRPTVQRLDSKRVFIDMDKHDVTQERESVQKLRNEGSTGHAILCDNLKKVYPGRDGNPP 583
Query: 120 KFAVRGLSLALPQGECFGMLGPNGAGKTS 148
K AVRGL L++ GECFGMLGPNGAGKTS
Sbjct: 584 KMAVRGLYLSVSSGECFGMLGPNGAGKTS 612
>AT3G47750.1 | Symbols: ATATH3, ABCA4 | ATP binding cassette
subfamily A4 | chr3:17606427-17610889 FORWARD LENGTH=947
Length = 947
Score = 172 bits (437), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 91/148 (61%), Positives = 106/148 (71%), Gaps = 5/148 (3%)
Query: 1 MRWGDLSDSTNGMKEVFIIIFMEWILALMFAYYMDQVLTSGCGKSHLFFMKEFQKNRSSS 60
M+W SDS M EVF II +EW LAL+ AYYMD+V S K F+K K +S S
Sbjct: 529 MKWKYFSDS--AMDEVFYIIIIEWFLALIAAYYMDRV--SSSAKDPFLFLKNLIK-KSPS 583
Query: 61 FQKLSFQRQDSKVLVDMEKPDVNQEREKVEQLILEPTTNHAIVCDNLRKVYPARDGNPAK 120
Q+ S QR S V V+MEK DV +ER KVEQL+LE +T+HAIVCD L+KVYP RDGNP K
Sbjct: 584 PQRHSLQRLGSSVSVEMEKLDVVEERAKVEQLMLESSTSHAIVCDKLKKVYPGRDGNPPK 643
Query: 121 FAVRGLSLALPQGECFGMLGPNGAGKTS 148
AV GLS+A+P GECFGMLGPNGAGKTS
Sbjct: 644 MAVGGLSIAVPPGECFGMLGPNGAGKTS 671
>AT3G47740.1 | Symbols: ATATH2, ATH2, ABCA3 | ABC2 homolog 2 |
chr3:17600651-17604965 FORWARD LENGTH=932
Length = 932
Score = 162 bits (409), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 86/148 (58%), Positives = 103/148 (69%), Gaps = 8/148 (5%)
Query: 1 MRWGDLSDSTNGMKEVFIIIFMEWILALMFAYYMDQVLTSGCGKSHLFFMKEFQKNRSSS 60
M+W SD N + EVF II +EW +AL+ YY+D++ S GK LFF+K + S
Sbjct: 517 MKWKYFSD--NAIDEVFYIIIVEWFVALIATYYIDKM--SSSGKDLLFFLKNQNPFKISH 572
Query: 61 FQKLSFQRQDSKVLVDMEKPDVNQEREKVEQLILEPTTNHAIVCDNLRKVYPARDGNPAK 120
S Q+Q S + V+MEK DV E EKV QL+LE +T+HAIVCD LRKVYP RDGNP K
Sbjct: 573 ----SLQKQVSAISVEMEKLDVIHESEKVAQLMLESSTSHAIVCDKLRKVYPGRDGNPPK 628
Query: 121 FAVRGLSLALPQGECFGMLGPNGAGKTS 148
AVR LSLA+P GECFGMLGPNGAGKTS
Sbjct: 629 KAVRVLSLAVPSGECFGMLGPNGAGKTS 656
>AT3G47770.1 | Symbols: ATATH5, ATH5, ABCA6 | ABC2 homolog 5 |
chr3:17618055-17622678 FORWARD LENGTH=900
Length = 900
Score = 161 bits (408), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 86/148 (58%), Positives = 103/148 (69%), Gaps = 5/148 (3%)
Query: 1 MRWGDLSDSTNGMKEVFIIIFMEWILALMFAYYMDQVLTSGCGKSHLFFMKEFQKNRSSS 60
M+W D S M EVF II +EW++AL+ YY+D+V S K F+K K S +
Sbjct: 488 MKWKDFRGS--AMDEVFTIIIVEWVVALVATYYIDRV--SSSSKDTFAFLKNPFK-LSPT 542
Query: 61 FQKLSFQRQDSKVLVDMEKPDVNQEREKVEQLILEPTTNHAIVCDNLRKVYPARDGNPAK 120
Q LSFQ++ S V V+MEK DV QE+E V+QLI E + NH IVCDNL+KVY RDGNP K
Sbjct: 543 PQMLSFQKERSDVSVEMEKLDVIQEKETVKQLIFERSKNHGIVCDNLKKVYQGRDGNPPK 602
Query: 121 FAVRGLSLALPQGECFGMLGPNGAGKTS 148
AV GLSLA+P GECFGMLGPNGAGKTS
Sbjct: 603 LAVCGLSLAVPSGECFGMLGPNGAGKTS 630
>AT3G47790.1 | Symbols: ATATH7, ATH7 | ABC2 homolog 7 |
chr3:17629584-17633711 FORWARD LENGTH=901
Length = 901
Score = 159 bits (401), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 83/148 (56%), Positives = 105/148 (70%), Gaps = 9/148 (6%)
Query: 1 MRWGDLSDSTNGMKEVFIIIFMEWILALMFAYYMDQVLTSGCGKSHLFFMKEFQKNRSSS 60
M+W D NGMKEV I+ +EW+L L AYY+DQ++ S K LFF+ + +
Sbjct: 494 MKWRDFG---NGMKEVTCIMLIEWLLLLGLAYYIDQIIYSR--KHPLFFLLQSTSKKKQH 548
Query: 61 FQKLSFQRQDSKVLVDMEKPDVNQEREKVEQLILEPTTNHAIVCDNLRKVYPARDGNPAK 120
F + SKV+V+MEKPDV +EREKVEQ +L+ T + A++C+NL+KVY +DGNP K
Sbjct: 549 FS----DNKISKVVVEMEKPDVCREREKVEQCLLKSTRDSAVLCNNLKKVYSGKDGNPQK 604
Query: 121 FAVRGLSLALPQGECFGMLGPNGAGKTS 148
AVRGLSLALPQGECFGMLGPNGAGKTS
Sbjct: 605 LAVRGLSLALPQGECFGMLGPNGAGKTS 632
>AT3G47760.1 | Symbols: ATATH4, ATH4, ABCA5 | ABC2 homolog 4 |
chr3:17611787-17616639 FORWARD LENGTH=872
Length = 872
Score = 157 bits (397), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 82/148 (55%), Positives = 100/148 (67%), Gaps = 11/148 (7%)
Query: 1 MRWGDLSDSTNGMKEVFIIIFMEWILALMFAYYMDQVLTSGCGKSHLFFMKEFQKNRSSS 60
M+W D +DS M+E+F II +EW +AL+ AYY D++ +SG FF+K Q S
Sbjct: 460 MKWKDFNDS--AMEEIFYIIIVEWFVALIAAYYTDKISSSGIDP--FFFLKN-QNPFKKS 514
Query: 61 FQKLSFQRQDSKVLVDMEKPDVNQEREKVEQLILEPTTNHAIVCDNLRKVYPARDGNPAK 120
QRQ S + ++MEK DV E L+LE +T HAIVCDNL+KVYP RDGNP K
Sbjct: 515 PSPYGLQRQVSAIAIEMEKLDVAHE------LMLETSTGHAIVCDNLKKVYPCRDGNPQK 568
Query: 121 FAVRGLSLALPQGECFGMLGPNGAGKTS 148
AVRGLSLA+P GECFGMLGPNGAGKTS
Sbjct: 569 MAVRGLSLAVPSGECFGMLGPNGAGKTS 596
>AT5G61740.1 | Symbols: ATATH14, ATH14 | ABC2 homolog 14 |
chr5:24808484-24812597 FORWARD LENGTH=848
Length = 848
Score = 153 bits (387), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 87/149 (58%), Positives = 105/149 (70%), Gaps = 10/149 (6%)
Query: 1 MRWGDLSDSTNGMKEVFIIIFMEWILALMFAYYMDQVLTSGCGKSHLFFMKEFQKNRSSS 60
M+W DL +S GM ++F ++ +EW + L+ AY +D L S G+S F K+ SSS
Sbjct: 433 MKWKDLKES--GMDKLFYLMSVEWFVILIVAYSID--LLSSSGRSPFVFFKK-----SSS 483
Query: 61 FQKLSFQRQDSK-VLVDMEKPDVNQEREKVEQLILEPTTNHAIVCDNLRKVYPARDGNPA 119
S QRQ+S+ VL+DMEK DV QEREKVE+L E TT HAIVCDNL+KVYP DGNP
Sbjct: 484 LPSPSVQRQNSENVLIDMEKTDVTQEREKVEKLRKEGTTGHAIVCDNLKKVYPGSDGNPP 543
Query: 120 KFAVRGLSLALPQGECFGMLGPNGAGKTS 148
K AVRGL L +P GECFGMLGPNGAGKTS
Sbjct: 544 KLAVRGLYLDVPSGECFGMLGPNGAGKTS 572
>AT2G41700.1 | Symbols: ABCA1, AtABCA1 | ATP-binding cassette A1 |
chr2:17383239-17396110 REVERSE LENGTH=1882
Length = 1882
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 55/100 (55%), Gaps = 4/100 (4%)
Query: 50 MKEFQKNRSSSFQKLSFQRQDSKVLVDMEKP-DVNQEREKVEQLILEPTTNHAIVCDNLR 108
+K F++ SS + + + DME DV +ER++V I + N + NLR
Sbjct: 1403 LKAFKQGAGSSSTEPLLKDSTGAISTDMEDDIDVQEERDRV---ISGLSDNTMLYLQNLR 1459
Query: 109 KVYPARDGNPAKFAVRGLSLALPQGECFGMLGPNGAGKTS 148
KVYP + K AV+ L+ ++ GECFG LG NGAGKT+
Sbjct: 1460 KVYPGDKHHGPKVAVQSLTFSVQAGECFGFLGTNGAGKTT 1499
>AT2G41700.2 | Symbols: ABCA1, AtABCA1 | ATP-binding cassette A1 |
chr2:17383239-17395932 REVERSE LENGTH=1846
Length = 1846
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 54/98 (55%), Gaps = 5/98 (5%)
Query: 53 FQKNRSSSFQKLSFQRQDSKVL-VDMEKP-DVNQEREKVEQLILEPTTNHAIVCDNLRKV 110
+ + S+SF + + + DME DV +ER++V I + N + NLRKV
Sbjct: 1363 YDRVYSTSFSTEPLLKDSTGAISTDMEDDIDVQEERDRV---ISGLSDNTMLYLQNLRKV 1419
Query: 111 YPARDGNPAKFAVRGLSLALPQGECFGMLGPNGAGKTS 148
YP + K AV+ L+ ++ GECFG LG NGAGKT+
Sbjct: 1420 YPGDKHHGPKVAVQSLTFSVQAGECFGFLGTNGAGKTT 1457