Miyakogusa Predicted Gene

Lj0g3v0239469.1
Show Alignment: 
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0239469.1 tr|D7LZR6|D7LZR6_ARALL Pentatricopeptide
repeat-containing protein OS=Arabidopsis lyrata subsp.
lyra,23.62,2e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; PPR,Pentatricopeptide repeat; no descript,CUFF.15711.1
         (495 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G62890.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   299   3e-81
AT5G66520.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   298   5e-81
AT5G56310.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   293   1e-79
AT2G02980.1 | Symbols: OTP85 | Pentatricopeptide repeat (PPR) su...   288   7e-78
AT2G20540.1 | Symbols: MEF21 | mitochondrial editing factor  21 ...   286   2e-77
AT5G43790.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   285   7e-77
AT3G15930.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   283   1e-76
AT2G42920.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   283   2e-76
AT5G59200.1 | Symbols: OTP80 | Tetratricopeptide repeat (TPR)-li...   282   3e-76
AT5G48910.1 | Symbols: LPA66 | Pentatricopeptide repeat (PPR) su...   280   1e-75
AT3G28660.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   277   1e-74
AT4G37380.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   277   1e-74
AT5G40405.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   276   3e-74
AT3G28640.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   273   1e-73
AT1G09190.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   273   2e-73
AT4G21065.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   273   2e-73
AT4G02750.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   273   2e-73
AT2G33760.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   272   5e-73
AT1G33350.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   270   1e-72
AT1G50270.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   270   2e-72
AT2G22410.1 | Symbols: SLO1 | SLOW GROWTH 1 | chr2:9509035-95110...   270   2e-72
AT1G08070.1 | Symbols: OTP82 | Tetratricopeptide repeat (TPR)-li...   269   3e-72
AT5G06540.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   267   1e-71
AT3G57430.1 | Symbols: OTP84 | Tetratricopeptide repeat (TPR)-li...   266   3e-71
AT3G47530.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   263   2e-70
AT2G29760.1 | Symbols: OTP81 | Tetratricopeptide repeat (TPR)-li...   263   2e-70
AT5G04780.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   262   3e-70
AT1G59720.1 | Symbols: CRR28 | Tetratricopeptide repeat (TPR)-li...   262   4e-70
AT3G13770.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   262   5e-70
AT1G74630.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   261   6e-70
AT3G12770.1 | Symbols: MEF22 | mitochondrial editing factor  22 ...   261   1e-69
AT2G13600.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   260   1e-69
AT1G77170.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   260   1e-69
AT2G03880.1 | Symbols: REME1 | Pentatricopeptide repeat (PPR) su...   259   4e-69
AT5G08305.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   258   5e-69
AT4G18840.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   257   1e-68
AT2G33680.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   257   1e-68
AT1G06150.1 | Symbols: EMB1444 | basic helix-loop-helix (bHLH) D...   256   3e-68
AT5G61800.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   255   5e-68
AT4G19191.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   255   6e-68
AT1G31920.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   254   1e-67
AT4G30700.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   254   1e-67
AT5G15300.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   253   2e-67
AT3G46790.1 | Symbols: CRR2 | Tetratricopeptide repeat (TPR)-lik...   252   4e-67
AT3G04750.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   252   4e-67
AT4G38010.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   251   6e-67
AT4G21300.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   248   5e-66
AT4G33170.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   248   8e-66
AT2G36730.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   248   1e-65
AT2G44880.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   247   1e-65
AT2G01510.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   247   1e-65
AT4G33990.1 | Symbols: EMB2758 | Tetratricopeptide repeat (TPR)-...   246   2e-65
AT3G23330.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   246   3e-65
AT3G49142.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   245   6e-65
AT4G14820.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   244   8e-65
AT1G20230.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   244   8e-65
AT5G44230.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   244   1e-64
AT3G26782.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   243   3e-64
AT5G52630.1 | Symbols: MEF1 | mitochondrial RNAediting factor 1 ...   242   5e-64
AT4G21065.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   242   5e-64
AT4G14170.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   242   6e-64
AT3G09040.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   241   9e-64
AT1G31430.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   240   1e-63
AT1G68930.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   240   2e-63
AT4G18750.1 | Symbols: DOT4 | Pentatricopeptide repeat (PPR) sup...   239   4e-63
AT3G56550.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   238   1e-62
AT1G18485.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   237   1e-62
AT3G14330.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   236   3e-62
AT3G22690.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Protein of...   236   3e-62
AT3G22690.2 | Symbols:  | INVOLVED IN: photosystem II assembly, ...   236   4e-62
AT3G29230.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   235   5e-62
AT5G15340.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   235   5e-62
AT5G08510.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   234   2e-61
AT4G39952.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   233   2e-61
AT5G16860.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   232   4e-61
AT2G03380.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   231   8e-61
AT1G56570.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   231   8e-61
AT2G37320.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   231   1e-60
AT3G16610.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   231   1e-60
AT3G24000.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   230   1e-60
AT3G03580.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   230   2e-60
AT4G16835.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   230   2e-60
AT3G18970.1 | Symbols: MEF20 | mitochondrial editing factor  20 ...   229   2e-60
AT1G34160.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   229   3e-60
AT3G08820.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   228   9e-60
AT1G13410.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   228   1e-59
AT1G05750.1 | Symbols: PDE247, CLB19 | Tetratricopeptide repeat ...   226   2e-59
AT5G40410.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   226   2e-59
AT1G25360.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   226   3e-59
AT3G11460.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   225   4e-59
AT1G09410.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   224   8e-59
AT3G53360.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   224   9e-59
AT4G39530.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   224   9e-59
AT5G39350.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   224   1e-58
AT3G05240.1 | Symbols: MEF19 | mitochondrial editing factor  19 ...   224   1e-58
AT1G77010.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   223   2e-58
AT1G17630.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   223   2e-58
AT5G46460.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   223   2e-58
AT5G13230.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   223   2e-58
AT1G11290.1 | Symbols: CRR22 | Pentatricopeptide repeat (PPR) su...   223   2e-58
AT2G22070.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   223   3e-58
AT1G03540.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   223   3e-58
AT4G01030.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   222   4e-58
AT2G41080.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   222   4e-58
AT1G26900.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   222   4e-58
AT5G27110.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   221   1e-57
AT1G69350.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   221   1e-57
AT1G04840.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   220   1e-57
AT2G37310.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   220   2e-57
AT1G74600.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   219   2e-57
AT1G28690.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   219   3e-57
AT3G02010.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   219   4e-57
AT2G34400.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   219   5e-57
AT2G21090.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   219   5e-57
AT1G10330.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   218   6e-57
AT1G06140.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   218   7e-57
AT4G13650.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   218   1e-56
AT2G04860.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   217   1e-56
AT4G31070.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   217   2e-56
AT3G22150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   217   2e-56
AT3G49170.1 | Symbols: EMB2261 | Tetratricopeptide repeat (TPR)-...   217   2e-56
AT1G15510.1 | Symbols: ATECB2, ECB2, VAC1 | Tetratricopeptide re...   216   2e-56
AT3G63370.1 | Symbols: OTP86 | Tetratricopeptide repeat (TPR)-li...   216   2e-56
AT3G15130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   216   3e-56
AT4G20770.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   216   4e-56
AT3G47840.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   216   4e-56
AT4G32430.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   215   5e-56
AT2G27610.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   215   5e-56
AT5G50990.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   215   5e-56
AT4G15720.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   215   6e-56
AT3G01580.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   214   9e-56
AT4G37170.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   214   1e-55
AT3G02330.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   214   1e-55
AT5G65570.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   212   4e-55
AT2G40720.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   212   4e-55
AT3G14730.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   211   7e-55
AT5G37570.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   211   1e-54
AT1G03510.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   211   1e-54
AT2G45350.1 | Symbols: CRR4 | Pentatricopeptide repeat (PPR) sup...   210   2e-54
AT1G56690.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   210   2e-54
AT3G25970.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   209   3e-54
AT4G35130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   209   4e-54
AT4G25270.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   208   6e-54
AT4G16470.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   208   6e-54
AT1G53600.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   206   2e-53
AT5G13270.1 | Symbols: RARE1 | Pentatricopeptide repeat (PPR) su...   205   7e-53
AT5G42450.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   205   7e-53
AT1G16480.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   204   8e-53
AT1G16480.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   204   1e-52
AT5G55740.1 | Symbols: CRR21 | Tetratricopeptide repeat (TPR)-li...   204   1e-52
AT1G09220.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   204   1e-52
AT3G51320.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   203   2e-52
AT2G17210.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   203   3e-52
AT4G04370.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   202   3e-52
AT3G25060.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   201   1e-51
AT5G59600.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   201   1e-51
AT3G26630.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   201   1e-51
AT3G05340.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   199   3e-51
AT1G74400.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   199   3e-51
AT3G61170.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   199   3e-51
AT4G22760.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   199   4e-51
AT3G49710.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   199   5e-51
AT5G66500.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   198   7e-51
AT3G21470.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   198   7e-51
AT3G49740.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   197   1e-50
AT5G09950.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   197   1e-50
AT5G50390.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   197   1e-50
AT1G71490.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   197   2e-50
AT5G08490.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   195   7e-50
AT1G64310.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   194   1e-49
AT4G14050.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   193   2e-49
AT5G52850.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   192   3e-49
AT3G18840.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   192   3e-49
AT4G08210.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   191   7e-49
AT3G20730.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   190   2e-48
AT4G14850.1 | Symbols: LOI1, MEF11 | Pentatricopeptide repeat (P...   190   2e-48
AT3G13880.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   189   5e-48
AT3G50420.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   189   5e-48
AT5G19020.1 | Symbols: MEF18 | mitochondrial editing factor  18 ...   188   6e-48
AT2G39620.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   187   2e-47
AT2G46050.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   186   4e-47
AT1G71420.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   182   7e-46
AT5G39680.1 | Symbols: EMB2744 | Pentatricopeptide repeat (PPR) ...   181   7e-46
AT4G19220.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   181   1e-45
AT2G36980.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   181   1e-45
AT2G02750.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   180   2e-45
AT1G62260.1 | Symbols: MEF9 | mitochondrial editing factor 9 | c...   179   5e-45
AT1G32415.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   179   6e-45
AT1G43980.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   176   2e-44
AT3G26540.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   175   8e-44
AT2G35030.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   172   4e-43
AT1G22830.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   169   4e-42
AT1G22830.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   169   4e-42
AT1G23450.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   164   2e-40
AT3G58590.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   159   5e-39
AT1G19720.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   157   2e-38
AT5G03800.1 | Symbols: EMB175, emb1899, EMB166 | Pentatricopepti...   145   9e-35
AT1G14470.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   140   1e-33
AT5G47460.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   140   3e-33
AT4G18520.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   139   5e-33
AT1G71460.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   129   5e-30
AT2G31400.1 | Symbols: GUN1 | genomes uncoupled 1 | chr2:1338720...   115   9e-26
AT2G15690.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   105   5e-23
AT4G32450.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   105   7e-23
AT1G63330.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   105   1e-22
AT1G62590.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   104   1e-22
AT2G25580.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   103   2e-22
AT3G53700.1 | Symbols: MEE40 | Pentatricopeptide repeat (PPR) su...   102   8e-22
AT1G63080.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   101   1e-21
AT1G29710.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   101   1e-21
AT1G62680.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    99   6e-21
AT1G05670.2 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    98   2e-20
AT1G05670.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    98   2e-20
AT1G63070.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    96   7e-20
AT1G63130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    95   9e-20
AT5G16640.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    94   2e-19
AT5G01110.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    94   2e-19
AT5G65560.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    94   2e-19
AT1G62930.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    94   3e-19
AT1G63400.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    94   3e-19
AT5G02860.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    93   4e-19
AT1G62910.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    93   6e-19
AT5G21222.1 | Symbols:  | protein kinase family protein | chr5:7...    92   1e-18
AT3G18110.1 | Symbols: EMB1270 | Pentatricopeptide repeat (PPR) ...    90   3e-18
AT2G02150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    90   3e-18
AT5G41170.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    89   5e-18
AT1G63150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    89   9e-18
AT5G12100.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    89   1e-17
AT2G34370.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    88   1e-17
AT2G16880.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    88   1e-17
AT1G12775.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    88   1e-17
AT5G39710.1 | Symbols: EMB2745 | Tetratricopeptide repeat (TPR)-...    88   1e-17
AT3G59040.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    87   2e-17
AT1G18900.2 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    87   2e-17
AT1G18900.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    87   2e-17
AT3G59040.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    87   2e-17
AT1G18900.3 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    87   2e-17
AT5G61990.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    87   2e-17
AT1G74750.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    87   2e-17
AT1G62670.1 | Symbols: RPF2 | rna processing factor 2 | chr1:232...    87   2e-17
AT1G12700.1 | Symbols:  | ATP binding;nucleic acid binding;helic...    87   4e-17
AT1G09900.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    86   6e-17
AT3G16710.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    86   9e-17
AT2G18940.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    85   1e-16
AT1G06710.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    85   1e-16
AT4G28010.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    84   2e-16
AT3G22470.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    84   3e-16
AT1G64580.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    84   3e-16
AT3G16010.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    84   3e-16
AT3G13150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    82   1e-15
AT1G31840.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    81   1e-15
AT1G12300.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    81   2e-15
AT3G54980.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    81   2e-15
AT1G31790.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    80   3e-15
AT3G09060.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    80   3e-15
AT3G06920.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    79   5e-15
AT4G31850.1 | Symbols: PGR3 | proton gradient regulation 3 | chr...    79   5e-15
AT1G06580.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    79   6e-15
AT1G64583.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    79   7e-15
AT1G09680.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    79   7e-15
AT2G39230.1 | Symbols: LOJ | LATERAL ORGAN JUNCTION | chr2:16381...    79   8e-15
AT5G04810.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    79   9e-15
AT1G13630.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    78   1e-14
AT1G62720.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    78   1e-14
AT4G19440.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    78   1e-14
AT4G19440.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    78   1e-14
AT1G13630.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    78   2e-14
AT1G31840.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    78   2e-14
AT1G12620.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    78   2e-14
AT5G46580.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    77   2e-14
AT5G16420.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    77   3e-14
AT4G16390.1 | Symbols: SVR7 | pentatricopeptide (PPR) repeat-con...    77   3e-14
AT2G32630.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    77   3e-14
AT2G41720.1 | Symbols: EMB2654 | Tetratricopeptide repeat (TPR)-...    76   4e-14
AT2G41720.2 | Symbols: EMB2654 | Tetratricopeptide repeat (TPR)-...    76   4e-14
AT5G55840.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    76   5e-14
AT5G39980.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    76   6e-14
AT5G18475.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    76   6e-14
AT4G19890.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    75   7e-14
AT4G26800.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    75   9e-14
AT5G57250.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    75   9e-14
AT1G73710.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    75   1e-13
AT1G74850.1 | Symbols: PTAC2 | plastid transcriptionally active ...    74   2e-13
AT5G64320.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    74   2e-13
AT1G03560.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    74   3e-13
AT1G55890.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    73   5e-13
AT1G77340.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    73   5e-13
AT2G17525.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    72   6e-13
AT3G04760.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    72   6e-13
AT5G42310.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    72   9e-13
AT5G59900.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    72   1e-12
AT2G01740.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    72   1e-12
AT2G35130.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    71   1e-12
AT2G35130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    71   1e-12
AT1G79540.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    71   1e-12
AT1G64100.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    71   2e-12
AT1G22960.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    71   2e-12
AT1G09820.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    71   2e-12
AT1G64100.2 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    71   2e-12
AT1G55630.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    70   2e-12
AT1G74580.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    70   3e-12
AT1G63230.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    70   3e-12
AT1G51965.1 | Symbols: ABO5 | ABA Overly-Sensitive 5 | chr1:1931...    70   3e-12
AT1G13040.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    70   3e-12
AT3G60050.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    70   5e-12
AT1G62914.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    69   5e-12
AT3G07290.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    69   6e-12
AT3G23020.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    69   6e-12
AT5G25630.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    69   1e-11
AT3G48810.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    68   1e-11
AT1G52620.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    68   1e-11
AT5G24830.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    68   2e-11
AT2G17140.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    67   2e-11
AT1G10910.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    67   3e-11
AT2G17670.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    67   4e-11
AT4G20090.1 | Symbols: EMB1025 | Pentatricopeptide repeat (PPR) ...    66   4e-11
AT2G15630.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    66   5e-11
AT4G11690.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    65   9e-11
AT1G20300.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    65   9e-11
AT5G46680.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    65   1e-10
AT1G63630.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    64   2e-10
AT5G46100.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    64   3e-10
AT3G62470.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    63   4e-10
AT3G18020.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    63   5e-10
AT5G50280.1 | Symbols: EMB1006 | Pentatricopeptide repeat (PPR) ...    63   5e-10
AT5G14770.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    63   6e-10
AT1G16830.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    63   6e-10
AT2G06000.2 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    63   6e-10
AT2G06000.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    63   6e-10
AT3G49730.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    62   1e-09
AT5G25630.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    62   1e-09
AT1G79490.1 | Symbols: EMB2217 | Pentatricopeptide repeat (PPR) ...    61   2e-09
AT5G14820.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    61   2e-09
AT3G62540.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    61   2e-09
AT5G61400.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    61   2e-09
AT3G49240.1 | Symbols: emb1796 | Pentatricopeptide repeat (PPR) ...    60   2e-09
AT3G09650.1 | Symbols: HCF152, CRM3 | Tetratricopeptide repeat (...    60   4e-09
AT5G18950.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    60   4e-09
AT2G19280.2 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    59   5e-09
AT2G19280.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    59   5e-09
AT5G38730.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    59   7e-09
AT1G11900.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    59   8e-09
AT3G13160.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    59   9e-09
AT1G19290.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    59   9e-09
AT2G17670.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    59   9e-09
AT1G77360.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    59   1e-08
AT5G27270.1 | Symbols: EMB976 | Tetratricopeptide repeat (TPR)-l...    58   2e-08
AT4G34830.1 | Symbols: MRL1 | Pentatricopeptide repeat (PPR) sup...    58   2e-08
AT5G28460.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    57   2e-08
AT5G03560.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    57   2e-08
AT5G28370.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    57   3e-08
AT1G53330.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    57   3e-08
AT5G65820.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    57   3e-08
AT5G40400.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    57   3e-08
AT4G39620.2 | Symbols: EMB2453 | Tetratricopeptide repeat (TPR)-...    57   3e-08
AT4G39620.1 | Symbols: EMB2453, ATPPR5 | Tetratricopeptide repea...    57   4e-08
AT1G02060.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    57   4e-08
AT3G16890.1 | Symbols: PPR40 | pentatricopeptide (PPR) domain pr...    57   4e-08
AT1G73400.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    56   5e-08
AT1G79080.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    56   6e-08
AT4G01570.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    56   6e-08
AT2G36240.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    55   9e-08
AT3G61520.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    55   1e-07
AT1G11710.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    55   1e-07
AT4G36680.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    55   2e-07
AT1G52640.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    54   2e-07
AT1G74900.1 | Symbols: OTP43 | Pentatricopeptide repeat (PPR) su...    54   2e-07
AT5G18390.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    54   2e-07
AT1G07740.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    54   2e-07
AT3G22670.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    54   3e-07
AT4G38150.2 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    54   3e-07
AT4G38150.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    54   3e-07
AT1G71060.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    54   3e-07
AT1G08610.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    54   3e-07
AT3G29290.1 | Symbols: emb2076 | Pentatricopeptide repeat (PPR) ...    54   3e-07
AT3G53170.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    53   4e-07
AT2G26790.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    53   4e-07
AT1G61870.1 | Symbols: PPR336 | pentatricopeptide repeat 336 | c...    53   5e-07
AT4G26680.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    53   6e-07
AT4G26680.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    53   6e-07
AT2G01390.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    52   8e-07
AT1G77150.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    51   2e-06
AT1G80550.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    50   2e-06
AT1G30290.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    50   2e-06
AT3G02650.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    50   3e-06
AT1G13800.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    50   3e-06
AT5G13770.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    49   7e-06
AT5G15010.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    49   8e-06

>AT3G62890.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:23246168-23247973 FORWARD
           LENGTH=573
          Length = 573

 Score =  299 bits (765), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 161/424 (37%), Positives = 240/424 (56%), Gaps = 38/424 (8%)

Query: 99  FIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSV 158
           F++N +IRA  H+       +P+S++  M  + + P+ +TFPFL  S   P H    Q  
Sbjct: 25  FLWNIIIRAIVHNVSSPQRHSPISVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRT 84

Query: 159 HAHVLKLGHLHDIYVHNSLLGVYA------------------------------ASPRLF 188
           HA +L  G   D +V  SLL +Y+                              A   L 
Sbjct: 85  HAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLI 144

Query: 189 SLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQY-----AGVAPNRVTMVN 243
              R+LFDEM  R+V+SW+ +I G+   GK+ +AL  F +MQ      A V PN  TM  
Sbjct: 145 DDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMST 204

Query: 244 ALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSV-KEK 302
            L+AC   GA+E G W+H +I +   E+D+VLGTALIDMYAKCG +E   RVF+++  +K
Sbjct: 205 VLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKK 264

Query: 303 NVFTWNAVIKGLALAKSGEEAIRLFNRME-QDGVRADEVTLLAVLSACNHSGLVDMGRQI 361
           +V  ++A+I  LA+    +E  +LF+ M   D +  + VT + +L AC H GL++ G+  
Sbjct: 265 DVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSY 324

Query: 362 FGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQ 421
           F  ++E ++G  P+++HY CMVDL  RSG ++EA   +  MP +P   +WGSLL  S+  
Sbjct: 325 FKMMIE-EFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRML 383

Query: 422 GDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSS 481
           GD++  E   ++L+EL+P NS  YV LSN+YA+ GRW +V+ +R  M+ + + K  GCS 
Sbjct: 384 GDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSY 443

Query: 482 VEVE 485
           VEVE
Sbjct: 444 VEVE 447


>AT5G66520.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:26551879-26553741 FORWARD
           LENGTH=620
          Length = 620

 Score =  298 bits (764), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 163/479 (34%), Positives = 253/479 (52%), Gaps = 38/479 (7%)

Query: 44  CHSRLHVQQIQAQLILHNLQSNPTIAHHFITVCQSHXXXXXXXXXXXX--XVPRPHVFIF 101
           C  +  ++QI A+++   L  +      F++ C S                  RP  F++
Sbjct: 24  CSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLW 83

Query: 102 NSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAH 161
           N +IR FS S     SL    ++  M  ++   N YTFP L K+ S    F +   +HA 
Sbjct: 84  NLMIRGFSCSDEPERSLL---LYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQ 140

Query: 162 VLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFD- 220
           + KLG+ +D+Y  NSL+  YA +   F L   LFD +   D VSW  +I G+  AGK D 
Sbjct: 141 ITKLGYENDVYAVNSLINSYAVTGN-FKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDI 199

Query: 221 ------------------------------DALLAFEQMQYAGVAPNRVTMVNALAACAD 250
                                         +AL  F +MQ + V P+ V++ NAL+ACA 
Sbjct: 200 ALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQ 259

Query: 251 SGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAV 310
            GA+E G WIH ++ +    +D VLG  LIDMYAKCG +EE + VF ++K+K+V  W A+
Sbjct: 260 LGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTAL 319

Query: 311 IKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKY 370
           I G A    G EAI  F  M++ G++ + +T  AVL+AC+++GLV+ G+ IF + +E  Y
Sbjct: 320 ISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIF-YSMERDY 378

Query: 371 GFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFV 430
              P ++HY C+VDLL R+G L EA   ++ MP  P   +WG+LL + +   ++E  E +
Sbjct: 379 NLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEI 438

Query: 431 ARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
              L+ ++P +   YVH +N++A   +WD   + R +MK++ + K  GCS++ +E   H
Sbjct: 439 GEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTH 497


>AT5G56310.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:22802322-22803914 FORWARD
           LENGTH=530
          Length = 530

 Score =  293 bits (751), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 167/484 (34%), Positives = 256/484 (52%), Gaps = 36/484 (7%)

Query: 37  VTLLKDFCHSRLHVQQIQAQLILHNLQSNPTIAHHFITVCQSHXXXXXXXXXXXXXVPRP 96
           VT LK   ++   ++Q    +I+  L  +      FI  C S+              P P
Sbjct: 18  VTSLKIHGNNLKTLKQSHCYMIITGLNRDNLNVAKFIEAC-SNAGHLRYAYSVFTHQPCP 76

Query: 97  HVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQ 156
           + ++ N++IRA S     +     ++++  +      P+ +TFPF+ K           +
Sbjct: 77  NTYLHNTMIRALSLLDEPNAHSIAITVYRKLWALCAKPDTFTFPFVLKIAVRVSDVWFGR 136

Query: 157 SVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDV------------- 203
            +H  V+  G    ++V   L+ +Y +   L    R++FDEM  +DV             
Sbjct: 137 QIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGD-ARKMFDEMLVKDVNVWNALLAGYGKV 195

Query: 204 --------------------VSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVN 243
                               VSWT +I G+  +G+  +A+  F++M    V P+ VT++ 
Sbjct: 196 GEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLA 255

Query: 244 ALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKN 303
            L+ACAD G++E+G  I  ++   G    V L  A+IDMYAK G + + + VF  V E+N
Sbjct: 256 VLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERN 315

Query: 304 VFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFG 363
           V TW  +I GLA    G EA+ +FNRM + GVR ++VT +A+LSAC+H G VD+G+++F 
Sbjct: 316 VVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFN 375

Query: 364 FLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGD 423
            +   KYG  PN++HY CM+DLL R+G LREA EV++ MPF    A+WGSLL +S    D
Sbjct: 376 SM-RSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKANAAIWGSLLAASNVHHD 434

Query: 424 LEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVE 483
           LE  E    +L++LEP NS  Y+ L+NLY+ +GRWD+   +R MMK   + K  G SS+E
Sbjct: 435 LELGERALSELIKLEPNNSGNYMLLANLYSNLGRWDESRMMRNMMKGIGVKKMAGESSIE 494

Query: 484 VEEQ 487
           VE +
Sbjct: 495 VENR 498


>AT2G02980.1 | Symbols: OTP85 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:868468-870279 FORWARD
           LENGTH=603
          Length = 603

 Score =  288 bits (736), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 155/470 (32%), Positives = 264/470 (56%), Gaps = 8/470 (1%)

Query: 22  TFDYTLRMSGFSDRAVTLLKDFCHSRLHVQQIQAQLILHNLQSNPTIAHHFITVCQSHXX 81
           TF    ++   + +   LL   C+S   + QIQA  I  +++    +A   I  C     
Sbjct: 17  TFTKHSKIDTVNTQNPILLISKCNSLRELMQIQAYAIKSHIEDVSFVAK-LINFCTESPT 75

Query: 82  XXXXXXXX--XXXVPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTF 139
                        +  P + IFNS+ R +S      N L   S+F  +  + ILP++YTF
Sbjct: 76  ESSMSYARHLFEAMSEPDIVIFNSMARGYSR---FTNPLEVFSLFVEILEDGILPDNYTF 132

Query: 140 PFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMT 199
           P L K+ +      + + +H   +KLG   ++YV  +L+ +Y     + S  R +FD + 
Sbjct: 133 PSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDS-ARCVFDRIV 191

Query: 200 HRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAW 259
              VV +  MI G+    + ++AL  F +MQ   + PN +T+++ L++CA  G++++G W
Sbjct: 192 EPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKW 251

Query: 260 IHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKS 319
           IH + +++ +   V + TALIDM+AKCG +++ V +F  ++ K+   W+A+I   A    
Sbjct: 252 IHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGK 311

Query: 320 GEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHY 379
            E+++ +F RM  + V+ DE+T L +L+AC+H+G V+ GR+ F  +V  K+G +P++KHY
Sbjct: 312 AEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMV-SKFGIVPSIKHY 370

Query: 380 ACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEP 439
             MVDLL+R+G+L +A+E +  +P  PT  +W  LL +  S  +L+ +E V+ ++ EL+ 
Sbjct: 371 GSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDD 430

Query: 440 ANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
           ++   YV LSNLYA   +W+ V+ +R +MKDR+  K  GCSS+EV    H
Sbjct: 431 SHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVH 480


>AT2G20540.1 | Symbols: MEF21 | mitochondrial editing factor  21 |
           chr2:8844160-8845764 FORWARD LENGTH=534
          Length = 534

 Score =  286 bits (732), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 152/473 (32%), Positives = 254/473 (53%), Gaps = 42/473 (8%)

Query: 46  SRLHVQQIQAQLILHNLQSNPTIAHHFITVCQSHXXXXXXXXXXXXXVPRPHVFIFNSLI 105
           SR   ++I A +I+H L  +  +    +  C                V  P+VF++NS+I
Sbjct: 22  SRNEWKKINASIIIHGLSQSSFMVTKMVDFCDK-IEDMDYATRLFNQVSNPNVFLYNSII 80

Query: 106 RAFSHSHHHHNSL--TPLSIFAHMHRNTI-LPNHYTFPFLFKSLSAPCHFAQAQSVHAHV 162
           RA++H     NSL    + I+  + R +  LP+ +TFPF+FKS ++       + VH H+
Sbjct: 81  RAYTH-----NSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHL 135

Query: 163 LKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDV------------------- 203
            K G    +   N+L+ +Y     L     ++FDEM  RDV                   
Sbjct: 136 CKFGPRFHVVTENALIDMYMKFDDLVD-AHKVFDEMYERDVISWNSLLSGYARLGQMKKA 194

Query: 204 ------------VSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADS 251
                       VSWT MI G+   G + +A+  F +MQ AG+ P+ +++++ L +CA  
Sbjct: 195 KGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQL 254

Query: 252 GAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVI 311
           G++E+G WIH +  R G+     +  ALI+MY+KCG + + +++F  ++ K+V +W+ +I
Sbjct: 255 GSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMI 314

Query: 312 KGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYG 371
            G A   +   AI  FN M++  V+ + +T L +LSAC+H G+   G + F  + +  Y 
Sbjct: 315 SGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQ-DYQ 373

Query: 372 FIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVA 431
             P ++HY C++D+LAR+G L  A E+ + MP  P   +WGSLL S ++ G+L+ +    
Sbjct: 374 IEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLDVALVAM 433

Query: 432 RKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEV 484
             LVELEP +   YV L+N+YA++G+W+DV ++R M+++  + K  G S +EV
Sbjct: 434 DHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLIEV 486


>AT5G43790.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:17592099-17593481 REVERSE
           LENGTH=460
          Length = 460

 Score =  285 bits (728), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 161/452 (35%), Positives = 252/452 (55%), Gaps = 24/452 (5%)

Query: 44  CHSRLHVQQIQAQLIL----HNLQSNPTIAHHFITVCQSHXXXXXXXXXXXXXVPRPHVF 99
           C S  +++QI AQ+I     H+      + H   TVC S+             +P P VF
Sbjct: 19  CKSLQNLKQIHAQIITIGLSHHTYPLSKLLHLSSTVCLSYALSILRQ------IPNPSVF 72

Query: 100 IFNSLIRAFSHSHHHHNSLTPLSIFAHM---HRNTILPNHYTFPFLFKSLSAPCHFAQ-A 155
           ++N+LI +   +H+   +    S++  +     N + PN +T+P LFK+      + +  
Sbjct: 73  LYNTLISSIVSNHNSTQTHLAFSLYDQILSSRSNFVRPNEFTYPSLFKASGFDAQWHRHG 132

Query: 156 QSVHAHVLKLGHL--HDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGF 213
           +++HAHVLK      HD +V  +L+G YA   +L    R LF+ +   D+ +W  ++  +
Sbjct: 133 RALHAHVLKFLEPVNHDRFVQAALVGFYANCGKLRE-ARSLFERIREPDLATWNTLLAAY 191

Query: 214 RNAGKFD---DALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWE 270
            N+ + D   + LL F +MQ   V PN +++V  + +CA+ G    G W H ++ +N   
Sbjct: 192 ANSEEIDSDEEVLLLFMRMQ---VRPNELSLVALIKSCANLGEFVRGVWAHVYVLKNNLT 248

Query: 271 LDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRM 330
           L+  +GT+LID+Y+KCG +    +VF  + +++V  +NA+I+GLA+   G+E I L+  +
Sbjct: 249 LNQFVGTSLIDLYSKCGCLSFARKVFDEMSQRDVSCYNAMIRGLAVHGFGQEGIELYKSL 308

Query: 331 EQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSG 390
              G+  D  T +  +SAC+HSGLVD G QIF  + +  YG  P V+HY C+VDLL RSG
Sbjct: 309 ISQGLVPDSATFVVTISACSHSGLVDEGLQIFNSM-KAVYGIEPKVEHYGCLVDLLGRSG 367

Query: 391 SLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSN 450
            L EA E ++ MP  P   +W S L SS++ GD E  E   + L+ LE  NS  YV LSN
Sbjct: 368 RLEEAEECIKKMPVKPNATLWRSFLGSSQTHGDFERGEIALKHLLGLEFENSGNYVLLSN 427

Query: 451 LYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSV 482
           +YA + RW DVEK R +MKD ++ K  G S++
Sbjct: 428 IYAGVNRWTDVEKTRELMKDHRVNKSPGISTL 459


>AT3G15930.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:5387444-5389690 FORWARD
           LENGTH=687
          Length = 687

 Score =  283 bits (725), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 152/425 (35%), Positives = 235/425 (55%), Gaps = 34/425 (8%)

Query: 95  RPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQ 154
           +  VF +N +I  ++    +  S+    +   M RN + P   T   +  + S       
Sbjct: 198 KEDVFSWNLMISGYNRMKEYEESI---ELLVEMERNLVSPTSVTLLLVLSACSKVKDKDL 254

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAA------SPRLF-------------------- 188
            + VH +V +      + + N+L+  YAA      + R+F                    
Sbjct: 255 CKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVE 314

Query: 189 ----SLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNA 244
                L R  FD+M  RD +SWT+MI G+  AG F+++L  F +MQ AG+ P+  TMV+ 
Sbjct: 315 RGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSV 374

Query: 245 LAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNV 304
           L ACA  G++E+G WI  +I +N  + DVV+G ALIDMY KCG  E+  +VF  + +++ 
Sbjct: 375 LTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDK 434

Query: 305 FTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGF 364
           FTW A++ GLA    G+EAI++F +M+   ++ D++T L VLSACNHSG+VD  R+ F  
Sbjct: 435 FTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAK 494

Query: 365 LVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDL 424
           +    +   P++ HY CMVD+L R+G ++EA+E++R MP +P   +WG+LL +S+   D 
Sbjct: 495 M-RSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDE 553

Query: 425 EFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEV 484
             +E  A+K++ELEP N A Y  L N+YA   RW D+ +VR  + D  + K  G S +EV
Sbjct: 554 PMAELAAKKILELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEV 613

Query: 485 EEQGH 489
               H
Sbjct: 614 NGFAH 618



 Score =  159 bits (403), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 115/476 (24%), Positives = 221/476 (46%), Gaps = 50/476 (10%)

Query: 16  PFCSVLTFDYTLRMSGFSD-------RAVTLLKDFCHSRLHVQQIQAQLILHNLQSNPTI 68
           PF S L+    L MS  ++       R +++L   C +    +Q+ +Q I   +  NPT 
Sbjct: 10  PFNSELSIFKALLMSTITESISNDYSRFISIL-GVCKTTDQFKQLHSQSITRGVAPNPTF 68

Query: 69  AHH-FITVCQSHXXXXXXXXXXXXXVPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHM 127
               F+  C                +P P V ++N++I+ +S        +    ++ +M
Sbjct: 69  QKKLFVFWCSRLGGHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGV---RLYLNM 125

Query: 128 HRNTILPNHYTFPFLFKSLSAPCH-FAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPR 186
            +  + P+ +TFPFL   L       A  + +H HV+K G   ++YV N+L+ +Y+    
Sbjct: 126 LKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCG- 184

Query: 187 LFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALA 246
           L  + R +FD     DV SW +MI G+    ++++++    +M+   V+P  VT++  L+
Sbjct: 185 LMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLS 244

Query: 247 ACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFT 306
           AC+     ++   +H+++     E  + L  AL++ YA CG ++  VR+F S+K ++V +
Sbjct: 245 ACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVIS 304

Query: 307 WNAVIKG------LALAKSG-------------------------EEAIRLFNRMEQDGV 335
           W +++KG      L LA++                           E++ +F  M+  G+
Sbjct: 305 WTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGM 364

Query: 336 RADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREA 395
             DE T+++VL+AC H G +++G  I  ++ + K     +V     ++D+  + G   +A
Sbjct: 365 IPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNK--IKNDVVVGNALIDMYFKCGCSEKA 422

Query: 396 FEVMRCMPFDPTKAMWGSLLV--SSKSQGDLEFSEFVARKLVELEPANSAYYVHLS 449
            +V   M     K  W +++V  ++  QG      F   + + ++P +  Y   LS
Sbjct: 423 QKVFHDMD-QRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLS 477


>AT2G42920.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr2:17858705-17860384 FORWARD
           LENGTH=559
          Length = 559

 Score =  283 bits (724), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 166/483 (34%), Positives = 255/483 (52%), Gaps = 36/483 (7%)

Query: 39  LLKDFCHSRLHVQQIQAQLILHNLQSNPTIAHHFITVCQSHXXXXXXXXXXXXXVPRPHV 98
           L+   C +   ++QI A LI   L S+   A   +  C +              +   + 
Sbjct: 30  LIDTQCSTMRELKQIHASLIKTGLISDTVTASRVLAFCCASPSDMNYAYLVFTRINHKNP 89

Query: 99  FIFNSLIRAFSHSHHHHNSLTPLSIFAHM--HRNTILPNHYTFPFLFKSLSAPCHFAQAQ 156
           F++N++IR FS S     ++   SIF  M     ++ P   T+P +FK+          +
Sbjct: 90  FVWNTIIRGFSRSSFPEMAI---SIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGR 146

Query: 157 SVHAHVLKLGHLHDIYVHNSLLGVYAASPRL------------------------FSLC- 191
            +H  V+K G   D ++ N++L +Y     L                        F+ C 
Sbjct: 147 QLHGMVIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCG 206

Query: 192 -----RQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALA 246
                + LFDEM  R+ VSW  MI GF   G+F DAL  F +MQ   V P+  TMV+ L 
Sbjct: 207 LIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLN 266

Query: 247 ACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFT 306
           ACA  GA E G WIH++I RN +EL+ ++ TALIDMY KCG +EEG+ VF    +K +  
Sbjct: 267 ACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSC 326

Query: 307 WNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLV 366
           WN++I GLA     E A+ LF+ +E+ G+  D V+ + VL+AC HSG V    + F  + 
Sbjct: 327 WNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHSGEVHRADEFFRLMK 386

Query: 367 EGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEF 426
           E KY   P++KHY  MV++L  +G L EA  +++ MP +    +W SLL + +  G++E 
Sbjct: 387 E-KYMIEPSIKHYTLMVNVLGGAGLLEEAEALIKNMPVEEDTVIWSSLLSACRKIGNVEM 445

Query: 427 SEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEE 486
           ++  A+ L +L+P  +  YV LSN YA  G +++  + R +MK+RQ+ K++GCSS+EV+ 
Sbjct: 446 AKRAAKCLKKLDPDETCGYVLLSNAYASYGLFEEAVEQRLLMKERQMEKEVGCSSIEVDF 505

Query: 487 QGH 489
           + H
Sbjct: 506 EVH 508


>AT5G59200.1 | Symbols: OTP80 | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:23888793-23890427 REVERSE
           LENGTH=544
          Length = 544

 Score =  282 bits (722), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 165/497 (33%), Positives = 258/497 (51%), Gaps = 47/497 (9%)

Query: 26  TLRMSGFSDRAVTLLKDF--CHSRLHVQQIQAQLILHNLQSNPTIAHHFITVCQSHXXXX 83
           TLR+S    R  TL+     C +  HV  I A++I      +  +    I VC S     
Sbjct: 23  TLRLS----RRKTLISVLRSCKNIAHVPSIHAKIIRTFHDQDAFVVFELIRVC-STLDSV 77

Query: 84  XXXXXXXXXVPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLF 143
                    V  P+V+++ ++I  F  S     S   +S++  M  N++LP++Y    + 
Sbjct: 78  DYAYDVFSYVSNPNVYLYTAMIDGFVSSGR---SADGVSLYHRMIHNSVLPDNYVITSVL 134

Query: 144 KSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHR-- 201
           K+    C     + +HA VLKLG      V   ++ +Y  S  L +  +++FDEM  R  
Sbjct: 135 KA----CDLKVCREIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVN-AKKMFDEMPDRDH 189

Query: 202 -----------------------------DVVSWTVMIMGFRNAGKFDDALLAFEQMQYA 232
                                        D V WT MI G     + + AL  F +MQ  
Sbjct: 190 VAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQME 249

Query: 233 GVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEG 292
            V+ N  T V  L+AC+D GA+E+G W+H F+     EL   +G ALI+MY++CG + E 
Sbjct: 250 NVSANEFTAVCVLSACSDLGALELGRWVHSFVENQRMELSNFVGNALINMYSRCGDINEA 309

Query: 293 VRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHS 352
            RVF  +++K+V ++N +I GLA+  +  EAI  F  M   G R ++VTL+A+L+AC+H 
Sbjct: 310 RRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHG 369

Query: 353 GLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWG 412
           GL+D+G ++F  + +  +   P ++HY C+VDLL R G L EA+  +  +P +P   M G
Sbjct: 370 GLLDIGLEVFNSM-KRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIENIPIEPDHIMLG 428

Query: 413 SLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQ 472
           +LL + K  G++E  E +A++L E E  +S  YV LSNLYA  G+W +  ++R  M+D  
Sbjct: 429 TLLSACKIHGNMELGEKIAKRLFESENPDSGTYVLLSNLYASSGKWKESTEIRESMRDSG 488

Query: 473 LTKDLGCSSVEVEEQGH 489
           + K+ GCS++EV+ Q H
Sbjct: 489 IEKEPGCSTIEVDNQIH 505


>AT5G48910.1 | Symbols: LPA66 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:19832969-19834909 REVERSE
           LENGTH=646
          Length = 646

 Score =  280 bits (717), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 159/490 (32%), Positives = 250/490 (51%), Gaps = 50/490 (10%)

Query: 44  CHSRLHVQQIQAQLILHNLQSNPTIAHHFITVCQS---HXXXXXXXXXXXXXVPRPHVFI 100
           C +   + QI A  I      +   A   +  C +   H             +P+ + F 
Sbjct: 33  CRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFS 92

Query: 101 FNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTIL-PNHYTFPFLFKSLSAPCHFAQAQSVH 159
           +N++IR FS S     +L  +++F  M  +  + PN +TFP + K+ +      + + +H
Sbjct: 93  WNTIIRGFSESDED-KALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIH 151

Query: 160 AHVLKLGHLHDIYVHNSLLGVYA-----ASPRLF-------------------------- 188
              LK G   D +V ++L+ +Y         R+                           
Sbjct: 152 GLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLW 211

Query: 189 -------------SLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVA 235
                           R LFD+M  R VVSW  MI G+   G F DA+  F +M+   + 
Sbjct: 212 NVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIR 271

Query: 236 PNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRV 295
           PN VT+V+ L A +  G++E+G W+H +   +G  +D VLG+ALIDMY+KCG +E+ + V
Sbjct: 272 PNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHV 331

Query: 296 FSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLV 355
           F  +  +NV TW+A+I G A+     +AI  F +M Q GVR  +V  + +L+AC+H GLV
Sbjct: 332 FERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLV 391

Query: 356 DMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLL 415
           + GR+ F  +V    G  P ++HY CMVDLL RSG L EA E +  MP  P   +W +LL
Sbjct: 392 EEGRRYFSQMVSVD-GLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALL 450

Query: 416 VSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTK 475
            + + QG++E  + VA  L+++ P +S  YV LSN+YA  G W +V ++R  MK++ + K
Sbjct: 451 GACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRK 510

Query: 476 DLGCSSVEVE 485
           D GCS ++++
Sbjct: 511 DPGCSLIDID 520


>AT3G28660.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:10739400-10740914 REVERSE
           LENGTH=504
          Length = 504

 Score =  277 bits (709), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 144/397 (36%), Positives = 226/397 (56%), Gaps = 9/397 (2%)

Query: 96  PHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQA 155
           P+ F+++++IR  S S   H  L    +        I P++ TF FL  +    C F+  
Sbjct: 76  PNSFVYDTMIRICSRSSQPHLGLRYFLLMVKEEEEDITPSYLTFHFLIVACLKACFFSVG 135

Query: 156 QSVHAHVLKLG-HLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFR 214
           + +H  V+K G  L D +V   +L +Y     LF   R++FDE+   DVV W V++ G+ 
Sbjct: 136 KQIHCWVVKNGVFLSDGHVQTGVLRIYVEDKLLFD-ARKVFDEIPQPDVVKWDVLMNGYV 194

Query: 215 NAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGW-ELDV 273
             G   + L  F++M   G+ P+  ++  AL ACA  GA+  G WIH+F+++  W E DV
Sbjct: 195 RCGLGSEGLEVFKEMLVRGIEPDEFSVTTALTACAQVGALAQGKWIHEFVKKKRWIESDV 254

Query: 274 VLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRME-Q 332
            +GTAL+DMYAKCG +E  V VF  +  +NVF+W A+I G A     ++A    +R+E +
Sbjct: 255 FVGTALVDMYAKCGCIETAVEVFEKLTRRNVFSWAALIGGYAAYGYAKKATTCLDRIERE 314

Query: 333 DGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSL 392
           DG++ D V LL VL+AC H G ++ GR +   + E +YG  P  +HY+C+VDL+ R+G L
Sbjct: 315 DGIKPDSVVLLGVLAACAHGGFLEEGRTMLENM-EARYGITPKHEHYSCIVDLMCRAGRL 373

Query: 393 REAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPAN----SAYYVHL 448
            +A +++  MP  P  ++WG+LL   ++  ++E  E   + L++LE  N     A  V L
Sbjct: 374 DDALDLIEKMPMKPLASVWGALLNGCRTHKNVELGELAVQNLLDLEKGNVEEEEAALVQL 433

Query: 449 SNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVE 485
           SN+Y  + R  +  KVRGM++ R + K  G S +EV+
Sbjct: 434 SNIYFSVQRNPEAFKVRGMIEQRGIRKTPGWSLLEVD 470


>AT4G37380.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:17572040-17573938 REVERSE
           LENGTH=632
          Length = 632

 Score =  277 bits (708), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 171/513 (33%), Positives = 261/513 (50%), Gaps = 45/513 (8%)

Query: 12  STTLPFCSVLTFDYTLRMSGFSDRAVTLLKDFCHSRLHVQQIQAQLILHNL---QSNPTI 68
           +T+LP  + L+   T R        + +L D   S   V QI A ++ HNL      P +
Sbjct: 8   ATSLP-QNQLSTTATARFRLPPPEKLAVLIDKSQSVDEVLQIHAAILRHNLLLHPRYPVL 66

Query: 69  AHHFITVCQSHXXXXXXXXXXXXXVPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMH 128
                    SH             +  P +F+F + I   S +     +     ++  + 
Sbjct: 67  NLKLHRAYASHGKIRHSLALFHQTID-PDLFLFTAAINTASINGLKDQAFL---LYVQLL 122

Query: 129 RNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLF 188
            + I PN +TF  L KS    C     + +H HVLK G   D YV   L+ VYA    + 
Sbjct: 123 SSEINPNEFTFSSLLKS----CSTKSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVV 178

Query: 189 SL------------------------------CRQLFDEMTHRDVVSWTVMIMGFRNAGK 218
           S                                R LFD M  RD+VSW VMI G+   G 
Sbjct: 179 SAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGF 238

Query: 219 FDDALLAFEQMQYAGV-APNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGT 277
            +DAL+ F+++   G   P+ +T+V AL+AC+  GA+E G WIH F++ +   L+V + T
Sbjct: 239 PNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCT 298

Query: 278 ALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQ-DGVR 336
            LIDMY+KCG +EE V VF+    K++  WNA+I G A+    ++A+RLFN M+   G++
Sbjct: 299 GLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQ 358

Query: 337 ADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAF 396
             ++T +  L AC H+GLV+ G +IF  + + +YG  P ++HY C+V LL R+G L+ A+
Sbjct: 359 PTDITFIGTLQACAHAGLVNEGIRIFESMGQ-EYGIKPKIEHYGCLVSLLGRAGQLKRAY 417

Query: 397 EVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMG 456
           E ++ M  D    +W S+L S K  GD    + +A  L+ L   NS  YV LSN+YA +G
Sbjct: 418 ETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVG 477

Query: 457 RWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
            ++ V KVR +MK++ + K+ G S++E+E + H
Sbjct: 478 DYEGVAKVRNLMKEKGIVKEPGISTIEIENKVH 510


>AT5G40405.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:16169315-16171153 FORWARD
           LENGTH=612
          Length = 612

 Score =  276 bits (706), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 160/476 (33%), Positives = 248/476 (52%), Gaps = 43/476 (9%)

Query: 50  VQQIQAQLILHNLQSNPTIAHHFI-TVCQSHXXXXXXXXXXXXXVPRPHVFIFNSLIRAF 108
           V+QI A+L +     +  +  HF+  V  S                +P +F  NS+IRA 
Sbjct: 22  VRQIHAKLYVDGTLKDDHLVGHFVKAVALSDHKYLDYANQILDRSEKPTLFALNSMIRA- 80

Query: 109 SHSHHHHNSLTPLSIFAHMHR-----NTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVL 163
                H  S  P   F    R     N + P++YT  FL ++ +          VH   +
Sbjct: 81  -----HCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRETGLQVHGMTI 135

Query: 164 KLGHLHDIYVHNSLLGVYA------ASPRLFS------------------------LCRQ 193
           + G  +D +V   L+ +YA      +  ++F+                          R+
Sbjct: 136 RRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFARK 195

Query: 194 LFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGA 253
           LF+ M  RD ++W  MI G+   G+  +AL  F  MQ  GV  N V M++ L+AC   GA
Sbjct: 196 LFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGA 255

Query: 254 VEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKG 313
           ++ G W H +I RN  ++ V L T L+D+YAKCG +E+ + VF  ++EKNV+TW++ + G
Sbjct: 256 LDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNG 315

Query: 314 LALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFI 373
           LA+   GE+ + LF+ M+QDGV  + VT ++VL  C+  G VD G++ F  +   ++G  
Sbjct: 316 LAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSM-RNEFGIE 374

Query: 374 PNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARK 433
           P ++HY C+VDL AR+G L +A  +++ MP  P  A+W SLL +S+   +LE     ++K
Sbjct: 375 PQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKK 434

Query: 434 LVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
           ++ELE AN   YV LSN+YA+   WD+V  VR  MK + + K  GCS +EV  + H
Sbjct: 435 MLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVH 490


>AT3G28640.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:10731518-10733032 REVERSE
           LENGTH=504
          Length = 504

 Score =  273 bits (699), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 142/397 (35%), Positives = 222/397 (55%), Gaps = 9/397 (2%)

Query: 96  PHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQA 155
           P+ F+++++IR  S S   H  L    +        I P++ TF FL  +    C F+  
Sbjct: 76  PNSFVYDTMIRICSRSSQPHLGLRYFLLMVKEEEEDIAPSYLTFHFLIVACLKACFFSVG 135

Query: 156 QSVHAHVLKLG-HLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFR 214
           + +H  V+K G  L D +V   +L +Y     L    R++FDE+   DVV W V++ G+ 
Sbjct: 136 KQIHCWVVKNGVFLSDSHVQTGVLRIYVEDKLLLD-ARKVFDEIPQPDVVKWDVLMNGYV 194

Query: 215 NAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGW-ELDV 273
             G   + L  F +M   G+ P+  ++  AL ACA  GA+  G WIH+F+++  W E DV
Sbjct: 195 RCGLGSEGLEVFREMLVKGLEPDEFSVTTALTACAQVGALAQGKWIHEFVKKKSWIESDV 254

Query: 274 VLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRME-Q 332
            +GTAL+DMYAKCG +E  V VF  +  +NVF+W A+I G A     ++A+    R+E +
Sbjct: 255 FVGTALVDMYAKCGCIETAVEVFKKLTRRNVFSWAALIGGYAAYGYAKKAMTCLERLERE 314

Query: 333 DGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSL 392
           DG++ D V LL VL+AC H G ++ GR +   + E +Y   P  +HY+C+VDL+ R+G L
Sbjct: 315 DGIKPDSVVLLGVLAACAHGGFLEEGRSMLENM-EARYEITPKHEHYSCIVDLMCRAGRL 373

Query: 393 REAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPAN----SAYYVHL 448
            +A  ++  MP  P  ++WG+LL   ++  ++E  E   + L++LE  N     A  V L
Sbjct: 374 DDALNLIEKMPMKPLASVWGALLNGCRTHKNVELGELAVKNLLDLEKGNVEEEEAALVQL 433

Query: 449 SNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVE 485
           SN+Y  + R  +  KVRGM++ R + K  G S +EV+
Sbjct: 434 SNIYFSVQRNPEASKVRGMIEQRGVRKTPGWSVLEVD 470


>AT1G09190.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:2966263-2967717 REVERSE
           LENGTH=484
          Length = 484

 Score =  273 bits (699), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 156/471 (33%), Positives = 247/471 (52%), Gaps = 39/471 (8%)

Query: 45  HSRLHVQQIQAQLILHNLQSNPTIAHHFITVCQSHXXXXXXXXXXXXXVPRPHVFIFNSL 104
           ++R  + +I A L+ H L  +  +  HFI++C S              +  P+V +FN++
Sbjct: 15  NTRTRLPEIHAHLLRHFLHGSNLLLAHFISICGS-LSNSDYANRVFSHIQNPNVLVFNAM 73

Query: 105 IRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLK 164
           I+ +S        L  LS F+ M    I  + YT+  L KS S+       + VH  +++
Sbjct: 74  IKCYSLVGP---PLESLSFFSSMKSRGIWADEYTYAPLLKSCSSLSDLRFGKCVHGELIR 130

Query: 165 LGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALL 224
            G      +   ++ +Y +  R+    +++FDEM+ R+VV W +MI GF ++G  +  L 
Sbjct: 131 TGFHRLGKIRIGVVELYTSGGRMGD-AQKVFDEMSERNVVVWNLMIRGFCDSGDVERGLH 189

Query: 225 AFEQMQY-------------------------------AGVAPNRVTMVNALAACADSGA 253
            F+QM                                  G  P+  T+V  L   A  G 
Sbjct: 190 LFKQMSERSIVSWNSMISSLSKCGRDREALELFCEMIDQGFDPDEATVVTVLPISASLGV 249

Query: 254 VEMGAWIHDFIRRNGWELD-VVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIK 312
           ++ G WIH     +G   D + +G AL+D Y K G +E    +F  ++ +NV +WN +I 
Sbjct: 250 LDTGKWIHSTAESSGLFKDFITVGNALVDFYCKSGDLEAATAIFRKMQRRNVVSWNTLIS 309

Query: 313 GLALAKSGEEAIRLFNRMEQDG-VRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYG 371
           G A+   GE  I LF+ M ++G V  +E T L VL+ C+++G V+ G ++FG ++E ++ 
Sbjct: 310 GSAVNGKGEFGIDLFDAMIEEGKVAPNEATFLGVLACCSYTGQVERGEELFGLMME-RFK 368

Query: 372 FIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVA 431
                +HY  MVDL++RSG + EAF+ ++ MP +   AMWGSLL + +S GD++ +E  A
Sbjct: 369 LEARTEHYGAMVDLMSRSGRITEAFKFLKNMPVNANAAMWGSLLSACRSHGDVKLAEVAA 428

Query: 432 RKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSV 482
            +LV++EP NS  YV LSNLYAE GRW DVEKVR +MK  +L K  G S++
Sbjct: 429 MELVKIEPGNSGNYVLLSNLYAEEGRWQDVEKVRTLMKKNRLRKSTGQSTI 479


>AT4G21065.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:11245976-11247763 FORWARD
           LENGTH=595
          Length = 595

 Score =  273 bits (698), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 157/463 (33%), Positives = 266/463 (57%), Gaps = 12/463 (2%)

Query: 34  DRAVTLLKDFCHSRL-HVQQIQAQLILHNLQ-SNPTIAHHFI--TVCQSHXXXXXXXXXX 89
           ++ + LL+ +  S +  ++QI A  I H +  S+  +  H I   V              
Sbjct: 16  EKCINLLQTYGVSSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKV 75

Query: 90  XXXVPRP-HVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTIL-PNHYTFPFLFKSLS 147
              + +P +VFI+N+LIR ++      NS++  S++  M  + ++ P+ +T+PFL K+++
Sbjct: 76  FSKIEKPINVFIWNTLIRGYAEIG---NSISAFSLYREMRVSGLVEPDTHTYPFLIKAVT 132

Query: 148 APCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWT 207
                   +++H+ V++ G    IYV NSLL +YA    + S   ++FD+M  +D+V+W 
Sbjct: 133 TMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVAS-AYKVFDKMPEKDLVAWN 191

Query: 208 VMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRN 267
            +I GF   GK ++AL  + +M   G+ P+  T+V+ L+ACA  GA+ +G  +H ++ + 
Sbjct: 192 SVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKV 251

Query: 268 GWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLF 327
           G   ++     L+D+YA+CGRVEE   +F  + +KN  +W ++I GLA+   G+EAI LF
Sbjct: 252 GLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELF 311

Query: 328 NRMEQ-DGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLL 386
             ME  +G+   E+T + +L AC+H G+V  G + F  + E +Y   P ++H+ CMVDLL
Sbjct: 312 KYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMRE-EYKIEPRIEHFGCMVDLL 370

Query: 387 ARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYV 446
           AR+G +++A+E ++ MP  P   +W +LL +    GD + +EF   ++++LEP +S  YV
Sbjct: 371 ARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYV 430

Query: 447 HLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
            LSN+YA   RW DV+K+R  M    + K  G S VEV  + H
Sbjct: 431 LLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVH 473


>AT4G02750.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:1221116-1223461 REVERSE
           LENGTH=781
          Length = 781

 Score =  273 bits (698), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 137/325 (42%), Positives = 205/325 (63%), Gaps = 2/325 (0%)

Query: 169 HDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQ 228
            ++   N+++  YA   ++ S  + LFD+M  RD VSW  MI G+  +G   +AL  F Q
Sbjct: 341 RNVSTWNTMITGYAQCGKI-SEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQ 399

Query: 229 MQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGR 288
           M+  G   NR +  +AL+ CAD  A+E+G  +H  + + G+E    +G AL+ MY KCG 
Sbjct: 400 MEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGS 459

Query: 289 VEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSA 348
           +EE   +F  +  K++ +WN +I G +    GE A+R F  M+++G++ D+ T++AVLSA
Sbjct: 460 IEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSA 519

Query: 349 CNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTK 408
           C+H+GLVD GRQ F + +   YG +PN +HYACMVDLL R+G L +A  +M+ MPF+P  
Sbjct: 520 CSHTGLVDKGRQYF-YTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDA 578

Query: 409 AMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMM 468
           A+WG+LL +S+  G+ E +E  A K+  +EP NS  YV LSNLYA  GRW DV K+R  M
Sbjct: 579 AIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRM 638

Query: 469 KDRQLTKDLGCSSVEVEEQGHTSQV 493
           +D+ + K  G S +E++ + HT  V
Sbjct: 639 RDKGVKKVPGYSWIEIQNKTHTFSV 663



 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 118/284 (41%), Gaps = 49/284 (17%)

Query: 169 HDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQ 228
            D+   N ++  Y  + R     R+LF+ M  RDV SW  M+ G+   G  DDA   F++
Sbjct: 124 RDLVSWNVMIKGYVRN-RNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDR 182

Query: 229 MQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL----------------- 271
           M       N V+    L+A   +  +E    +  F  R  W L                 
Sbjct: 183 MP----EKNDVSWNALLSAYVQNSKMEEACML--FKSRENWALVSWNCLLGGFVKKKKIV 236

Query: 272 ------------DVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKS 319
                       DVV    +I  YA+ G+++E  ++F     ++VFTW A++ G    + 
Sbjct: 237 EARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRM 296

Query: 320 GEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHY 379
            EEA  LF++M +     +EV+  A+L+       ++M +++F  +         NV  +
Sbjct: 297 VEEARELFDKMPE----RNEVSWNAMLAGYVQGERMEMAKELFDVMP------CRNVSTW 346

Query: 380 ACMVDLLARSGSLREAFEVMRCMP-FDPTKAMWGSLLVSSKSQG 422
             M+   A+ G + EA  +   MP  DP    W +++      G
Sbjct: 347 NTMITGYAQCGKISEAKNLFDKMPKRDPVS--WAAMIAGYSQSG 388


>AT2G33760.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:14275800-14277551 FORWARD
           LENGTH=583
          Length = 583

 Score =  272 bits (695), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 156/450 (34%), Positives = 246/450 (54%), Gaps = 20/450 (4%)

Query: 49  HVQQIQAQLILHNLQSNPTIAHHFITVCQSHXXXXXXXXXXXXXVPRPHVFIFNSLIRAF 108
            +QQ+ A LI+     + ++    IT+  S              VP P  F+FNS+I++ 
Sbjct: 24  QLQQVHAHLIVTGYGRSRSLLTKLITLACS-ARAIAYTHLLFLSVPLPDDFLFNSVIKST 82

Query: 109 SHSHHHHNSLTPLSIFAHMHR---NTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKL 165
           S          PL   A+  R   + + P++YTF  + KS +        + VH H +  
Sbjct: 83  SKLR------LPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVS 136

Query: 166 GHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLA 225
           G   D YV  +L+  Y+    +    RQ+FD M  + +V+W  ++ GF   G  D+A+  
Sbjct: 137 GFGLDTYVQAALVTFYSKCGDMEG-ARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQV 195

Query: 226 FEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAK 285
           F QM+ +G  P+  T V+ L+ACA +GAV +G+W+H +I   G +L+V LGTALI++Y++
Sbjct: 196 FYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSR 255

Query: 286 CGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQD-GVRADEVTLLA 344
           CG V +   VF  +KE NV  W A+I        G++A+ LFN+ME D G   + VT +A
Sbjct: 256 CGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVA 315

Query: 345 VLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPF 404
           VLSAC H+GLV+ GR ++  + +  Y  IP V+H+ CMVD+L R+G L EA++ +     
Sbjct: 316 VLSACAHAGLVEEGRSVYKRMTK-SYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIH--QL 372

Query: 405 DPT-----KAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWD 459
           D T      A+W ++L + K   + +    +A++L+ LEP N  ++V LSN+YA  G+ D
Sbjct: 373 DATGKATAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPDNPGHHVMLSNIYALSGKTD 432

Query: 460 DVEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
           +V  +R  M    L K +G S +EVE + +
Sbjct: 433 EVSHIRDGMMRNNLRKQVGYSVIEVENKTY 462


>AT1G33350.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:12090071-12091687 REVERSE
           LENGTH=538
          Length = 538

 Score =  270 bits (691), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 154/478 (32%), Positives = 240/478 (50%), Gaps = 40/478 (8%)

Query: 49  HVQQIQAQLILHNLQSNPTIAHHFITVCQSHXXXXXXXXXXXXXVPRPHVFIFNSLIRAF 108
           H++Q+Q+ +I+  L  +  +    +  C                   P+  ++ +++ A+
Sbjct: 39  HLKQVQSFMIVSGLSHSHFLCFKLLRFCTLRLCNLSYARFIFDRFSFPNTHLYAAVLTAY 98

Query: 109 SHSHHHHNSLTPLSIFAHM-HRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLG- 166
           S S   H S +  S F  M +R+   PNH+ +P + KS            VH H+ K G 
Sbjct: 99  SSSLPLHAS-SAFSFFRLMVNRSVPRPNHFIYPLVLKSTPYLSSAFSTPLVHTHLFKSGF 157

Query: 167 HLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAF 226
           HL+ + V  +LL  YA+S    +L RQLFDEM+ R+VVSWT M+ G+  +G   +A+  F
Sbjct: 158 HLY-VVVQTALLHSYASSVSHITLARQLFDEMSERNVVSWTAMLSGYARSGDISNAVALF 216

Query: 227 EQM--------------------------------QYAGVAPNRVTMVNALAACADSGAV 254
           E M                                    + PN VT+V  L+ACA +G +
Sbjct: 217 EDMPERDVPSWNAILAACTQNGLFLEAVSLFRRMINEPSIRPNEVTVVCVLSACAQTGTL 276

Query: 255 EMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGL 314
           ++   IH F  R     DV +  +L+D+Y KCG +EE   VF    +K++  WN++I   
Sbjct: 277 QLAKGIHAFAYRRDLSSDVFVSNSLVDLYGKCGNLEEASSVFKMASKKSLTAWNSMINCF 336

Query: 315 ALAKSGEEAIRLFNRMEQ---DGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYG 371
           AL    EEAI +F  M +   + ++ D +T + +L+AC H GLV  GR  F  L+  ++G
Sbjct: 337 ALHGRSEEAIAVFEEMMKLNINDIKPDHITFIGLLNACTHGGLVSKGRGYFD-LMTNRFG 395

Query: 372 FIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVA 431
             P ++HY C++DLL R+G   EA EVM  M     +A+WGSLL + K  G L+ +E   
Sbjct: 396 IEPRIEHYGCLIDLLGRAGRFDEALEVMSTMKMKADEAIWGSLLNACKIHGHLDLAEVAV 455

Query: 432 RKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
           + LV L P N  Y   ++NLY EMG W++  + R M+K +   K  G S +E++ + H
Sbjct: 456 KNLVALNPNNGGYVAMMANLYGEMGNWEEARRARKMIKHQNAYKPPGWSRIEIDNEVH 513


>AT1G50270.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:18622044-18623834 FORWARD
           LENGTH=596
          Length = 596

 Score =  270 bits (690), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 139/363 (38%), Positives = 212/363 (58%), Gaps = 3/363 (0%)

Query: 124 FAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLH-DIYVHNSLLGVYA 182
           F  M +  +  N  T   + K+          +SVH   L+ G +  D+++ +SL+ +Y 
Sbjct: 192 FVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYG 251

Query: 183 ASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMV 242
                +   +++FDEM  R+VV+WT +I G+  +  FD  +L FE+M  + VAPN  T+ 
Sbjct: 252 KCS-CYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLS 310

Query: 243 NALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEK 302
           + L+ACA  GA+  G  +H ++ +N  E++   GT LID+Y KCG +EE + VF  + EK
Sbjct: 311 SVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEK 370

Query: 303 NVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIF 362
           NV+TW A+I G A      +A  LF  M    V  +EVT +AVLSAC H GLV+ GR++F
Sbjct: 371 NVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLF 430

Query: 363 GFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQG 422
              ++G++   P   HYACMVDL  R G L EA  ++  MP +PT  +WG+L  S     
Sbjct: 431 -LSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHK 489

Query: 423 DLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSV 482
           D E  ++ A ++++L+P++S  Y  L+NLY+E   WD+V +VR  MKD+Q+ K  G S +
Sbjct: 490 DYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWI 549

Query: 483 EVE 485
           EV+
Sbjct: 550 EVK 552



 Score =  169 bits (429), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 103/305 (33%), Positives = 164/305 (53%), Gaps = 16/305 (5%)

Query: 100 IFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSL-----SAPCHFAQ 154
           +++SLI  FS     +  L+ L+ + HM RN ++P+ +TFP L K++     S P  F  
Sbjct: 69  LWDSLIGHFSGGITLNRRLSFLA-YRHMRRNGVIPSRHTFPPLLKAVFKLRDSNPFQF-- 125

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFR 214
               HAH++K G   D +V NSL+  Y++S  LF    +LFD    +DVV+WT MI GF 
Sbjct: 126 ----HAHIVKFGLDSDPFVRNSLISGYSSSG-LFDFASRLFDGAEDKDVVTWTAMIDGFV 180

Query: 215 NAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGW-ELDV 273
             G   +A++ F +M+  GVA N +T+V+ L A      V  G  +H      G  + DV
Sbjct: 181 RNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDV 240

Query: 274 VLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQD 333
            +G++L+DMY KC   ++  +VF  +  +NV TW A+I G   ++  ++ + +F  M + 
Sbjct: 241 FIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKS 300

Query: 334 GVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLR 393
            V  +E TL +VLSAC H G +  GR++  ++++       N      ++DL  + G L 
Sbjct: 301 DVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEI--NTTAGTTLIDLYVKCGCLE 358

Query: 394 EAFEV 398
           EA  V
Sbjct: 359 EAILV 363



 Score = 79.0 bits (193), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 121/267 (45%), Gaps = 16/267 (5%)

Query: 146 LSAPCHFAQAQSVHAHVLKLGHLH---DIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRD 202
           L  P HF   + +H  +L     +   D+++   L     A+ + F   R+L  ++    
Sbjct: 8   LDLPLHFLHLKQIHCLLLTSPIFYTRRDLFLSRLLRRCCTAATQ-FRYARRLLCQLQTLS 66

Query: 203 VVSWTVMIMGFRNAGKFDDAL--LAFEQMQYAGVAPNRVT---MVNALAACADSGAVEMG 257
           +  W  +I  F      +  L  LA+  M+  GV P+R T   ++ A+    DS   +  
Sbjct: 67  IQLWDSLIGHFSGGITLNRRLSFLAYRHMRRNGVIPSRHTFPPLLKAVFKLRDSNPFQFH 126

Query: 258 AWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALA 317
           A I  F    G + D  +  +LI  Y+  G  +   R+F   ++K+V TW A+I G    
Sbjct: 127 AHIVKF----GLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRN 182

Query: 318 KSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIP-NV 376
            S  EA+  F  M++ GV A+E+T+++VL A      V  GR + G  +E   G +  +V
Sbjct: 183 GSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLET--GRVKCDV 240

Query: 377 KHYACMVDLLARSGSLREAFEVMRCMP 403
              + +VD+  +     +A +V   MP
Sbjct: 241 FIGSSLVDMYGKCSCYDDAQKVFDEMP 267


>AT2G22410.1 | Symbols: SLO1 | SLOW GROWTH 1 | chr2:9509035-9511080
           FORWARD LENGTH=681
          Length = 681

 Score =  270 bits (689), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 125/298 (41%), Positives = 186/298 (62%), Gaps = 1/298 (0%)

Query: 187 LFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALA 246
           L  + R+LFD+M  +DVV W  MI G   A +  DAL  F++MQ +   P+ +TM++ L+
Sbjct: 338 LLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLS 397

Query: 247 ACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFT 306
           AC+  GA+++G WIH +I +    L+V LGT+L+DMYAKCG + E + VF  ++ +N  T
Sbjct: 398 ACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLT 457

Query: 307 WNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLV 366
           + A+I GLAL      AI  FN M   G+  DE+T + +LSAC H G++  GR  F  + 
Sbjct: 458 YTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQM- 516

Query: 367 EGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEF 426
           + ++   P +KHY+ MVDLL R+G L EA  +M  MP +   A+WG+LL   +  G++E 
Sbjct: 517 KSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVEL 576

Query: 427 SEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEV 484
            E  A+KL+EL+P++S  YV L  +Y E   W+D ++ R MM +R + K  GCSS+EV
Sbjct: 577 GEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEV 634



 Score =  188 bits (477), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 115/394 (29%), Positives = 199/394 (50%), Gaps = 41/394 (10%)

Query: 40  LKDFCHSRLHVQQIQAQLILHNLQSNPTIAHHFITVCQ-SHXXXXXXXXXXXXXVPRPHV 98
           L + C   LH++QIQAQ+I++ L  +P  +   I  C  S              +  P++
Sbjct: 59  LLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKILKGIENPNI 118

Query: 99  FIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTIL---PNHYTFPFLFKSLSAPCHFAQA 155
           F +N  IR FS S +   S     ++  M R+      P+H+T+P LFK  +     +  
Sbjct: 119 FSWNVTIRGFSESENPKESFL---LYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLG 175

Query: 156 QSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRN 215
             +  HVLKL      +VHN+ + ++A+   + +  R++FDE   RD+VSW  +I G++ 
Sbjct: 176 HMILGHVLKLRLELVSHVHNASIHMFASCGDMEN-ARKVFDESPVRDLVSWNCLINGYKK 234

Query: 216 AGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVL 275
            G+ + A+  ++ M+  GV P+ VTM+  +++C+  G +  G   +++++ NG  + + L
Sbjct: 235 IGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPL 294

Query: 276 GTALIDMYAKCGRVEEGVRVFSSV-------------------------------KEKNV 304
             AL+DM++KCG + E  R+F ++                               +EK+V
Sbjct: 295 VNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDV 354

Query: 305 FTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGF 364
             WNA+I G   AK G++A+ LF  M+    + DE+T++  LSAC+  G +D+G  I  +
Sbjct: 355 VLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRY 414

Query: 365 LVEGKYGFIPNVKHYACMVDLLARSGSLREAFEV 398
           +   KY    NV     +VD+ A+ G++ EA  V
Sbjct: 415 I--EKYSLSLNVALGTSLVDMYAKCGNISEALSV 446



 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 148/333 (44%), Gaps = 25/333 (7%)

Query: 122 SIFAHMHRNT-ILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVH---NSL 177
           S+++H  R T  LP+H   P  + S  +        S+      L HL  I      N L
Sbjct: 22  SLYSHSQRRTRSLPHHRDKPINWNSTHSFVLHNPLLSLLEKCKLLLHLKQIQAQMIINGL 81

Query: 178 LGVYAASPRLFSLCR-----------QLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAF 226
           +    AS RL + C            ++   + + ++ SW V I GF  +    ++ L +
Sbjct: 82  ILDPFASSRLIAFCALSESRYLDYSVKILKGIENPNIFSWNVTIRGFSESENPKESFLLY 141

Query: 227 EQMQYAGVA---PNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMY 283
           +QM   G     P+  T       CAD     +G  I   + +   EL   +  A I M+
Sbjct: 142 KQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILGHVLKLRLELVSHVHNASIHMF 201

Query: 284 AKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLL 343
           A CG +E   +VF     +++ +WN +I G       E+AI ++  ME +GV+ D+VT++
Sbjct: 202 ASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMI 261

Query: 344 AVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMP 403
            ++S+C+  G ++ G++ + ++ E   G    +     ++D+ ++ G + EA  +   + 
Sbjct: 262 GLVSSCSMLGDLNRGKEFYEYVKEN--GLRMTIPLVNALMDMFSKCGDIHEARRIFDNLE 319

Query: 404 FDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVE 436
              T   W +++      G L+    V+RKL +
Sbjct: 320 -KRTIVSWTTMISGYARCGLLD----VSRKLFD 347


>AT1G08070.1 | Symbols: OTP82 | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:2514374-2516599 REVERSE
           LENGTH=741
          Length = 741

 Score =  269 bits (688), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 140/399 (35%), Positives = 236/399 (59%), Gaps = 7/399 (1%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P   V  +N++I  ++ + ++  +L    +F  M +  + P+  T   +  + +     
Sbjct: 226 IPVKDVVSWNAMISGYAETGNYKEAL---ELFKDMMKTNVRPDESTMVTVVSACAQSGSI 282

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMG 212
              + VH  +   G   ++ + N+L+ +Y+    L + C  LF+ + ++DV+SW  +I G
Sbjct: 283 ELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETAC-GLFERLPYKDVISWNTLIGG 341

Query: 213 FRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFI--RRNGWE 270
           + +   + +ALL F++M  +G  PN VTM++ L ACA  GA+++G WIH +I  R  G  
Sbjct: 342 YTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVT 401

Query: 271 LDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRM 330
               L T+LIDMYAKCG +E   +VF+S+  K++ +WNA+I G A+    + +  LF+RM
Sbjct: 402 NASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRM 461

Query: 331 EQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSG 390
            + G++ D++T + +LSAC+HSG++D+GR IF  + +  Y   P ++HY CM+DLL  SG
Sbjct: 462 RKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQ-DYKMTPKLEHYGCMIDLLGHSG 520

Query: 391 SLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSN 450
             +EA E++  M  +P   +W SLL + K  G++E  E  A  L+++EP N   YV LSN
Sbjct: 521 LFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSN 580

Query: 451 LYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
           +YA  GRW++V K R ++ D+ + K  GCSS+E++   H
Sbjct: 581 IYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVH 619



 Score =  208 bits (529), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 142/525 (27%), Positives = 248/525 (47%), Gaps = 41/525 (7%)

Query: 1   MISKCCSIDEPSTTLPFCSVLTFDYTLRMSGFSDRAVTLLKDFCHSRLHVQQIQAQLILH 60
           M+  C  +  PS++ PF  + +       S  +  +++LL + C +   ++ I AQ+I  
Sbjct: 1   MMLSCSPLTVPSSSYPFHFLPSSSDPPYDSIRNHPSLSLLHN-CKTLQSLRIIHAQMIKI 59

Query: 61  NLQSNPTIAHHFITVC--QSHXXXXXXXXXXXXXVPRPHVFIFNSLIRAFSHSHHHHNSL 118
            L +        I  C    H             +  P++ I+N++ R  + S    + +
Sbjct: 60  GLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSS---DPV 116

Query: 119 TPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLL 178
           + L ++  M    +LPN YTFPF+ KS +    F + Q +H HVLKLG   D+YVH SL+
Sbjct: 117 SALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLI 176

Query: 179 GVYAASPRL------------------------------FSLCRQLFDEMTHRDVVSWTV 208
            +Y  + RL                                  ++LFDE+  +DVVSW  
Sbjct: 177 SMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNA 236

Query: 209 MIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNG 268
           MI G+   G + +AL  F+ M    V P+  TMV  ++ACA SG++E+G  +H +I  +G
Sbjct: 237 MISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHG 296

Query: 269 WELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFN 328
           +  ++ +  ALID+Y+KCG +E    +F  +  K+V +WN +I G       +EA+ LF 
Sbjct: 297 FGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQ 356

Query: 329 RMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLAR 388
            M + G   ++VT+L++L AC H G +D+GR I  ++ +   G          ++D+ A+
Sbjct: 357 EMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAK 416

Query: 389 SGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQG--DLEFSEFVARKLVELEPANSAYYV 446
            G +  A +V   +    + + W +++      G  D  F  F   + + ++P +   +V
Sbjct: 417 CGDIEAAHQVFNSI-LHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQP-DDITFV 474

Query: 447 HLSNLYAEMGRWDDVEKV-RGMMKDRQLTKDLGCSSVEVEEQGHT 490
            L +  +  G  D    + R M +D ++T  L      ++  GH+
Sbjct: 475 GLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHS 519


>AT5G06540.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:1999181-2001049 REVERSE
           LENGTH=622
          Length = 622

 Score =  267 bits (682), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 141/423 (33%), Positives = 240/423 (56%), Gaps = 34/423 (8%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +  P++F+FN LIR FS       +      +  M ++ I P++ TFPFL K+ S     
Sbjct: 77  IQNPNLFVFNLLIRCFSTGAEPSKAF---GFYTQMLKSRIWPDNITFPFLIKASSEMECV 133

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYA------ASPRLFSL---------------- 190
              +  H+ +++ G  +D+YV NSL+ +YA      A+ R+F                  
Sbjct: 134 LVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGY 193

Query: 191 --------CRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMV 242
                    R++FDEM HR++ +W++MI G+     F+ A+  FE M+  GV  N   MV
Sbjct: 194 CKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMV 253

Query: 243 NALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEK 302
           + +++CA  GA+E G   ++++ ++   ++++LGTAL+DM+ +CG +E+ + VF  + E 
Sbjct: 254 SVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPET 313

Query: 303 NVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIF 362
           +  +W+++IKGLA+     +A+  F++M   G    +VT  AVLSAC+H GLV+ G +I+
Sbjct: 314 DSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIY 373

Query: 363 GFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQG 422
             + +  +G  P ++HY C+VD+L R+G L EA   +  M   P   + G+LL + K   
Sbjct: 374 ENM-KKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYK 432

Query: 423 DLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSV 482
           + E +E V   L++++P +S YYV LSN+YA  G+WD +E +R MMK++ + K  G S +
Sbjct: 433 NTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLI 492

Query: 483 EVE 485
           E++
Sbjct: 493 EID 495



 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 138/307 (44%), Gaps = 40/307 (13%)

Query: 146 LSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGV------YAASPRLFSLCRQLFDEMT 199
           L +   F+  + +H  +L+   + D++V + LL +      +     L      +F ++ 
Sbjct: 19  LQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIFSQIQ 78

Query: 200 HRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAW 259
           + ++  + ++I  F    +   A   + QM  + + P+ +T    + A ++   V +G  
Sbjct: 79  NPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLVGEQ 138

Query: 260 IHDFIRRNGWELDVVLGTALIDMYA-------------------------------KCGR 288
            H  I R G++ DV +  +L+ MYA                               KCG 
Sbjct: 139 THSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGM 198

Query: 289 VEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSA 348
           VE    +F  +  +N+FTW+ +I G A     E+AI LF  M+++GV A+E  +++V+S+
Sbjct: 199 VENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISS 258

Query: 349 CNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTK 408
           C H G ++ G + + ++V  K     N+     +VD+  R G + +A  V   +P +   
Sbjct: 259 CAHLGALEFGERAYEYVV--KSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLP-ETDS 315

Query: 409 AMWGSLL 415
             W S++
Sbjct: 316 LSWSSII 322


>AT3G57430.1 | Symbols: OTP84 | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:21255731-21258403 REVERSE
           LENGTH=890
          Length = 890

 Score =  266 bits (679), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 141/405 (34%), Positives = 237/405 (58%), Gaps = 18/405 (4%)

Query: 98  VFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNT-ILPNHYTFPFLFKSLSAPCHFAQAQ 156
           + ++N++I  +S + H   +L    +F  M  +  +L N  T   +  +      F++ +
Sbjct: 369 IGLWNAMIAGYSQNEHDKEALL---LFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKE 425

Query: 157 SVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNA 216
           ++H  V+K G   D +V N+L+ +Y+   ++  +  ++F +M  RD+V+W  MI G+  +
Sbjct: 426 AIHGFVVKRGLDRDRFVQNTLMDMYSRLGKI-DIAMRIFGKMEDRDLVTWNTMITGYVFS 484

Query: 217 GKFDDALLAFEQMQ-----------YAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIR 265
              +DALL   +MQ              + PN +T++  L +CA   A+  G  IH +  
Sbjct: 485 EHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAI 544

Query: 266 RNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIR 325
           +N    DV +G+AL+DMYAKCG ++   +VF  + +KNV TWN +I    +  +G+EAI 
Sbjct: 545 KNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAID 604

Query: 326 LFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDL 385
           L   M   GV+ +EVT ++V +AC+HSG+VD G +IF ++++  YG  P+  HYAC+VDL
Sbjct: 605 LLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIF-YVMKPDYGVEPSSDHYACVVDL 663

Query: 386 LARSGSLREAFEVMRCMPFDPTKA-MWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAY 444
           L R+G ++EA+++M  MP D  KA  W SLL +S+   +LE  E  A+ L++LEP  +++
Sbjct: 664 LGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASH 723

Query: 445 YVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
           YV L+N+Y+  G WD   +VR  MK++ + K+ GCS +E  ++ H
Sbjct: 724 YVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVH 768



 Score =  117 bits (292), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 163/351 (46%), Gaps = 10/351 (2%)

Query: 132 ILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHD-IYVHNSLLGVYAASPRLFSL 190
           I P++Y FP L K+++        + +HAHV K G+  D + V N+L+ +Y      F  
Sbjct: 93  IKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGD-FGA 151

Query: 191 CRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACAD 250
             ++FD ++ R+ VSW  +I    +  K++ AL AF  M    V P+  T+V+ + AC++
Sbjct: 152 VYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSN 211

Query: 251 SGAVE---MGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTW 307
               E   MG  +H +  R G EL+  +   L+ MY K G++     +  S   +++ TW
Sbjct: 212 LPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTW 270

Query: 308 NAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVE 367
           N V+  L   +   EA+     M  +GV  DE T+ +VL AC+H  ++  G+++  + ++
Sbjct: 271 NTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALK 330

Query: 368 GKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVS-SKSQGDLE- 425
                  N    + +VD+      +     V   M FD    +W +++   S+++ D E 
Sbjct: 331 NG-SLDENSFVGSALVDMYCNCKQVLSGRRVFDGM-FDRKIGLWNAMIAGYSQNEHDKEA 388

Query: 426 FSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKD 476
              F+  +      ANS     +       G +   E + G +  R L +D
Sbjct: 389 LLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRD 439


>AT3G47530.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:17517382-17519157 REVERSE
           LENGTH=591
          Length = 591

 Score =  263 bits (672), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 149/452 (32%), Positives = 241/452 (53%), Gaps = 16/452 (3%)

Query: 47  RLHVQQIQAQLILHNLQSNPTIAHHFITVCQSHXXXXXXXXXXXXXVPR--PHVFIFNSL 104
           +LH++QI A L+  +L  N  + HHF++                    R  P +   N++
Sbjct: 24  KLHLRQIHALLLRTSLIRNSDVFHHFLSRLALSLIPRDINYSCRVFSQRLNPTLSHCNTM 83

Query: 105 IRAFSHSHHHHNSLTP---LSIFAHMHRNTILP-NHYTFPFLFKSLSAPCHFAQAQSVHA 160
           IRAFS S       TP     +F  + RN+ LP N  +  F  K             +H 
Sbjct: 84  IRAFSLSQ------TPCEGFRLFRSLRRNSSLPANPLSSSFALKCCIKSGDLLGGLQIHG 137

Query: 161 HVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFD 220
            +   G L D  +  +L+ +Y+        C+ +FDE+  RD VSW V+   +    +  
Sbjct: 138 KIFSDGFLSDSLLMTTLMDLYSTCENSTDACK-VFDEIPKRDTVSWNVLFSCYLRNKRTR 196

Query: 221 DALLAFEQMQY---AGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGT 277
           D L+ F++M+      V P+ VT + AL ACA+ GA++ G  +HDFI  NG    + L  
Sbjct: 197 DVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNLSN 256

Query: 278 ALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRA 337
            L+ MY++CG +++  +VF  ++E+NV +W A+I GLA+   G+EAI  FN M + G+  
Sbjct: 257 TLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEAFNEMLKFGISP 316

Query: 338 DEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFE 397
           +E TL  +LSAC+HSGLV  G   F  +  G++   PN+ HY C+VDLL R+  L +A+ 
Sbjct: 317 EEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVDLLGRARLLDKAYS 376

Query: 398 VMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGR 457
           +++ M   P   +W +LL + +  GD+E  E V   L+EL+   +  YV L N Y+ +G+
Sbjct: 377 LIKSMEMKPDSTIWRTLLGACRVHGDVELGERVISHLIELKAEEAGDYVLLLNTYSTVGK 436

Query: 458 WDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
           W+ V ++R +MK++++    GCS++E++   H
Sbjct: 437 WEKVTELRSLMKEKRIHTKPGCSAIELQGTVH 468


>AT2G29760.1 | Symbols: OTP81 | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:12712884-12715100 FORWARD
           LENGTH=738
          Length = 738

 Score =  263 bits (672), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 122/315 (38%), Positives = 205/315 (65%), Gaps = 3/315 (0%)

Query: 176 SLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQY-AGV 234
           ++L  YA S   +   R++ + M  +D+V+W  +I  +   GK ++AL+ F ++Q    +
Sbjct: 303 TMLDGYAISED-YEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNM 361

Query: 235 APNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVR 294
             N++T+V+ L+ACA  GA+E+G WIH +I+++G  ++  + +ALI MY+KCG +E+   
Sbjct: 362 KLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSRE 421

Query: 295 VFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGL 354
           VF+SV++++VF W+A+I GLA+   G EA+ +F +M++  V+ + VT   V  AC+H+GL
Sbjct: 422 VFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGL 481

Query: 355 VDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSL 414
           VD    +F   +E  YG +P  KHYAC+VD+L RSG L +A + +  MP  P+ ++WG+L
Sbjct: 482 VDEAESLF-HQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGAL 540

Query: 415 LVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLT 474
           L + K   +L  +E    +L+ELEP N   +V LSN+YA++G+W++V ++R  M+   L 
Sbjct: 541 LGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLK 600

Query: 475 KDLGCSSVEVEEQGH 489
           K+ GCSS+E++   H
Sbjct: 601 KEPGCSSIEIDGMIH 615



 Score =  172 bits (436), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 115/400 (28%), Positives = 194/400 (48%), Gaps = 45/400 (11%)

Query: 35  RAVTLLKDFCHSRLHVQQIQAQLILHNLQSNPTIAHH-FITVCQSHXXXXXXXXXXXXXV 93
           R ++L+ + C S   ++Q    +I     S+P  A   F     S              +
Sbjct: 32  RHISLI-ERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEI 90

Query: 94  PRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMH---RNTILPNHYTFPFLFKSLSAPC 150
           P+P+ F +N+LIRA++           LSI+A +     +   PN YTFPFL K+ +   
Sbjct: 91  PKPNSFAWNTLIRAYASGPD-----PVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVS 145

Query: 151 HFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMI 210
             +  QS+H   +K     D++V NSL+  Y +   L S C+ +F  +  +DVVSW  MI
Sbjct: 146 SLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACK-VFTTIKEKDVVSWNSMI 204

Query: 211 MGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWE 270
            GF   G  D AL  F++M+   V  + VTMV  L+ACA    +E G  +  +I  N   
Sbjct: 205 NGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVN 264

Query: 271 LDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRM 330
           +++ L  A++DMY KCG +E+  R+F +++EK+  TW  ++ G A+++  E A  + N M
Sbjct: 265 VNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSM 324

Query: 331 ---------------EQDG-----------------VRADEVTLLAVLSACNHSGLVDMG 358
                          EQ+G                 ++ +++TL++ LSAC   G +++G
Sbjct: 325 PQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELG 384

Query: 359 RQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEV 398
           R I  ++   K+G   N    + ++ + ++ G L ++ EV
Sbjct: 385 RWIHSYI--KKHGIRMNFHVTSALIHMYSKCGDLEKSREV 422



 Score =  122 bits (305), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 132/264 (50%), Gaps = 5/264 (1%)

Query: 154 QAQSVHAHVLKLGHLHDIYVHNSLLGVYAASP-RLFSLCRQLFDEMTHRDVVSWTVMIMG 212
           Q +  H H+++ G   D Y  + L  + A S        R++FDE+   +  +W  +I  
Sbjct: 45  QLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRA 104

Query: 213 FRNAGKFDDALLAFEQM-QYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
           + +      ++ AF  M   +   PN+ T    + A A+  ++ +G  +H    ++    
Sbjct: 105 YASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGS 164

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRME 331
           DV +  +LI  Y  CG ++   +VF+++KEK+V +WN++I G     S ++A+ LF +ME
Sbjct: 165 DVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKME 224

Query: 332 QDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGS 391
            + V+A  VT++ VLSAC     ++ GRQ+  ++ E +     N+     M+D+  + GS
Sbjct: 225 SEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNV--NLTLANAMLDMYTKCGS 282

Query: 392 LREAFEVMRCMPFDPTKAMWGSLL 415
           + +A  +   M  +     W ++L
Sbjct: 283 IEDAKRLFDAME-EKDNVTWTTML 305


>AT5G04780.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:1384540-1386447 FORWARD
           LENGTH=635
          Length = 635

 Score =  262 bits (670), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 133/393 (33%), Positives = 229/393 (58%), Gaps = 5/393 (1%)

Query: 101 FNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHA 160
           +N++I  ++ +     +L    IF  M       + +T   +  +    C   + + +H 
Sbjct: 130 WNTMIGLYTRNRMESEAL---DIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHC 186

Query: 161 HVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFD 220
             +K     ++YV  +LL +YA    +     Q+F+ M  +  V+W+ M+ G+     ++
Sbjct: 187 LSVKTCIDLNLYVGTALLDLYAKCG-MIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYE 245

Query: 221 DALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALI 280
           +ALL + + Q   +  N+ T+ + + AC++  A+  G  +H  I ++G+  +V + ++ +
Sbjct: 246 EALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAV 305

Query: 281 DMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEV 340
           DMYAKCG + E   +FS V+EKN+  WN +I G A     +E + LF +M+QDG+  +EV
Sbjct: 306 DMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEV 365

Query: 341 TLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMR 400
           T  ++LS C H+GLV+ GR+ F  L+   YG  PNV HY+CMVD+L R+G L EA+E+++
Sbjct: 366 TFSSLLSVCGHTGLVEEGRRFFK-LMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIK 424

Query: 401 CMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDD 460
            +PFDPT ++WGSLL S +   +LE +E  A KL ELEP N+  +V LSN+YA   +W++
Sbjct: 425 SIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEE 484

Query: 461 VEKVRGMMKDRQLTKDLGCSSVEVEEQGHTSQV 493
           + K R +++D  + K  G S ++++++ HT  V
Sbjct: 485 IAKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSV 517



 Score =  131 bits (329), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 165/317 (52%), Gaps = 17/317 (5%)

Query: 93  VPRPHV--FIFNSLIRAFSHSHHHHNSLTP--LSIFAHMHRNTILPNHYTFPFLFKSL-- 146
           +PR ++  F  N LIR        + S     +S+ A   +  + P  Y+  F  ++L  
Sbjct: 6   LPRMNILGFTVNFLIRCKVLPRRSNTSSLSRNISVLASYDQEEVSPGRYSNEFSNRNLVH 65

Query: 147 ------SAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTH 200
                 +      +A++ H  ++++    D+ + N L+  Y+       L RQ+FD M  
Sbjct: 66  EILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCG-FVELARQVFDGMLE 124

Query: 201 RDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACA-DSGAVEMGAW 259
           R +VSW  MI  +       +AL  F +M+  G   +  T+ + L+AC  +  A+E    
Sbjct: 125 RSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKK- 183

Query: 260 IHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKS 319
           +H    +   +L++ +GTAL+D+YAKCG +++ V+VF S+++K+  TW++++ G    K+
Sbjct: 184 LHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKN 243

Query: 320 GEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHY 379
            EEA+ L+ R ++  +  ++ TL +V+ AC++   +  G+Q+   +   K GF  NV   
Sbjct: 244 YEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVIC--KSGFGSNVFVA 301

Query: 380 ACMVDLLARSGSLREAF 396
           +  VD+ A+ GSLRE++
Sbjct: 302 SSAVDMYAKCGSLRESY 318



 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 96/204 (47%), Gaps = 3/204 (1%)

Query: 230 QYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRV 289
           +Y+    NR  +   L  CA +GAV      H  I R   E DV L   LI+ Y+KCG V
Sbjct: 53  RYSNEFSNRNLVHEILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFV 112

Query: 290 EEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSAC 349
           E   +VF  + E+++ +WN +I      +   EA+ +F  M  +G +  E T+ +VLSAC
Sbjct: 113 ELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSAC 172

Query: 350 NHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKA 409
             +      +++    V  K     N+     ++DL A+ G +++A +V   M  D +  
Sbjct: 173 GVNCDALECKKLHCLSV--KTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQ-DKSSV 229

Query: 410 MWGSLLVSSKSQGDLEFSEFVARK 433
            W S++       + E +  + R+
Sbjct: 230 TWSSMVAGYVQNKNYEEALLLYRR 253


>AT1G59720.1 | Symbols: CRR28 | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:21939868-21941784 REVERSE
           LENGTH=638
          Length = 638

 Score =  262 bits (670), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 146/404 (36%), Positives = 230/404 (56%), Gaps = 17/404 (4%)

Query: 99  FIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSV 158
           F++N+LIRA +H          L     + R    P+ +TFPF+ K+ +    F++ + V
Sbjct: 115 FMWNTLIRACAHDVSRKEEAFML-YRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQV 173

Query: 159 HAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGK 218
           H  ++K G   D+YV+N L+ +Y +   L  L R++FDEM  R +VSW  MI      G+
Sbjct: 174 HCQIVKHGFGGDVYVNNGLIHLYGSCGCL-DLARKVFDEMPERSLVSWNSMIDALVRFGE 232

Query: 219 FDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRN---GWELDVVL 275
           +D AL  F +MQ +   P+  TM + L+ACA  G++ +G W H F+ R       +DV++
Sbjct: 233 YDSALQLFREMQRS-FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLV 291

Query: 276 GTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRM--EQD 333
             +LI+MY KCG +    +VF  ++++++ +WNA+I G A     EEA+  F+RM  +++
Sbjct: 292 KNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRE 351

Query: 334 GVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLR 393
            VR + VT + +L ACNH G V+ GRQ F  +V   Y   P ++HY C+VDL+AR+G + 
Sbjct: 352 NVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVR-DYCIEPALEHYGCIVDLIARAGYIT 410

Query: 394 EAFEVMRCMPFDPTKAMWGSLLVSSKSQG-DLEFSEFVARKLVELEPAN-------SAYY 445
           EA +++  MP  P   +W SLL +   +G  +E SE +AR ++  +  N       S  Y
Sbjct: 411 EAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAY 470

Query: 446 VHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
           V LS +YA   RW+DV  VR +M +  + K+ GCSS+E+    H
Sbjct: 471 VLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISH 514



 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 151/325 (46%), Gaps = 18/325 (5%)

Query: 135 NHYTFPFLFKSLSAPC-HFAQAQSVHAHVLKLGHLHD---IYVHNSLLGVYAASPRLFSL 190
           NH+   F   SL+  C   +Q + +HA  L+  +  +   ++++  +L + ++S    + 
Sbjct: 46  NHHQRIF---SLAETCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQL-SSSFSDVNY 101

Query: 191 CRQLFDEMTHRDVVSWTVMIMGF-RNAGKFDDALLAFEQMQYAG-VAPNRVTMVNALAAC 248
             ++FD + +     W  +I     +  + ++A + + +M   G  +P++ T    L AC
Sbjct: 102 AFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKAC 161

Query: 249 ADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWN 308
           A       G  +H  I ++G+  DV +   LI +Y  CG ++   +VF  + E+++ +WN
Sbjct: 162 AYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWN 221

Query: 309 AVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEG 368
           ++I  L      + A++LF  M Q     D  T+ +VLSAC   G + +G     FL+  
Sbjct: 222 SMIDALVRFGEYDSALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRK 280

Query: 369 -KYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLE-- 425
                  +V     ++++  + GSLR A +V + M      A W ++++   + G  E  
Sbjct: 281 CDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQ-KRDLASWNAMILGFATHGRAEEA 339

Query: 426 --FSEFVARKLVELEPANSAYYVHL 448
             F + +  K   + P NS  +V L
Sbjct: 340 MNFFDRMVDKRENVRP-NSVTFVGL 363


>AT3G13770.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:4519647-4521533 FORWARD
           LENGTH=628
          Length = 628

 Score =  262 bits (669), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 143/398 (35%), Positives = 224/398 (56%), Gaps = 5/398 (1%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P  +V  + ++I  +S + H   +LT   +FA M R+   PN +TF  +  S       
Sbjct: 113 MPEKNVVSWTAMISRYSQTGHSSEALT---VFAEMMRSDGKPNEFTFATVLTSCIRASGL 169

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMG 212
              + +H  ++K  +   I+V +SLL +YA + ++    R++F+ +  RDVVS T +I G
Sbjct: 170 GLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKE-AREIFECLPERDVVSCTAIIAG 228

Query: 213 FRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELD 272
           +   G  ++AL  F ++   G++PN VT  + L A +    ++ G   H  + R      
Sbjct: 229 YAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFY 288

Query: 273 VVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRM-E 331
            VL  +LIDMY+KCG +    R+F ++ E+   +WNA++ G +    G E + LF  M +
Sbjct: 289 AVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRD 348

Query: 332 QDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGS 391
           +  V+ D VTLLAVLS C+H  + D G  IF  +V G+YG  P  +HY C+VD+L R+G 
Sbjct: 349 EKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGR 408

Query: 392 LREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNL 451
           + EAFE ++ MP  PT  + GSLL + +    ++  E V R+L+E+EP N+  YV LSNL
Sbjct: 409 IDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNL 468

Query: 452 YAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
           YA  GRW DV  VR MM  + +TK+ G S ++ E+  H
Sbjct: 469 YASAGRWADVNNVRAMMMQKAVTKEPGRSWIQHEQTLH 506



 Score =  138 bits (347), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 148/283 (52%), Gaps = 11/283 (3%)

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFR 214
            Q VHAH++K  +L   Y+   LL  Y     L    R++ DEM  ++VVSWT MI  + 
Sbjct: 71  GQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLED-ARKVLDEMPEKNVVSWTAMISRYS 129

Query: 215 NAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVV 274
             G   +AL  F +M  +   PN  T    L +C  +  + +G  IH  I +  ++  + 
Sbjct: 130 QTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIF 189

Query: 275 LGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDG 334
           +G++L+DMYAK G+++E   +F  + E++V +  A+I G A     EEA+ +F+R+  +G
Sbjct: 190 VGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEG 249

Query: 335 VRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLRE 394
           +  + VT  ++L+A +   L+D G+Q    ++  +  F   +++   ++D+ ++ G+L  
Sbjct: 250 MSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQN--SLIDMYSKCGNLSY 307

Query: 395 AFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVEL 437
           A  +   MP + T   W ++LV     G       + R+++EL
Sbjct: 308 ARRLFDNMP-ERTAISWNAMLVGYSKHG-------LGREVLEL 342



 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 84/159 (52%), Gaps = 2/159 (1%)

Query: 245 LAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNV 304
           L AC D  A+  G  +H  + +  +     L T L+  Y KC  +E+  +V   + EKNV
Sbjct: 59  LNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNV 118

Query: 305 FTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGF 364
            +W A+I   +      EA+ +F  M +   + +E T   VL++C  +  + +G+QI G 
Sbjct: 119 VSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGL 178

Query: 365 LVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMP 403
           +V  K+ +  ++   + ++D+ A++G ++EA E+  C+P
Sbjct: 179 IV--KWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLP 215


>AT1G74630.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:28030521-28032452 FORWARD
           LENGTH=643
          Length = 643

 Score =  261 bits (668), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 148/454 (32%), Positives = 235/454 (51%), Gaps = 67/454 (14%)

Query: 94  PRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNT-ILPNHYTFPFLFKSLSAPCHF 152
           P P  F+FN+L+R +S S   HNS   +++F  M R   + P+ ++F F+ K++      
Sbjct: 66  PEPDAFMFNTLVRGYSESDEPHNS---VAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSL 122

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAA---------------SPRLFSL------- 190
                +H   LK G    ++V  +L+G+Y                  P L +        
Sbjct: 123 RTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITAC 182

Query: 191 --------CRQLFDEMTHRDVVSWTVMIMGFRNAGK------------------------ 218
                    R++FD+M  R+  SW VM+ G+  AG+                        
Sbjct: 183 FRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIV 242

Query: 219 -------FDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
                  F+++ L F ++Q AG++PN V++   L+AC+ SG+ E G  +H F+ + G+  
Sbjct: 243 GIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSW 302

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEKN-VFTWNAVIKGLALAKSGEEAIRLFNRM 330
            V +  ALIDMY++CG V     VF  ++EK  + +W ++I GLA+   GEEA+RLFN M
Sbjct: 303 IVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEM 362

Query: 331 EQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSG 390
              GV  D ++ +++L AC+H+GL++ G   F  + +  Y   P ++HY CMVDL  RSG
Sbjct: 363 TAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEM-KRVYHIEPEIEHYGCMVDLYGRSG 421

Query: 391 SLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSN 450
            L++A++ +  MP  PT  +W +LL +  S G++E +E V ++L EL+P NS   V LSN
Sbjct: 422 KLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSN 481

Query: 451 LYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEV 484
            YA  G+W DV  +R  M  +++ K    S VEV
Sbjct: 482 AYATAGKWKDVASIRKSMIVQRIKKTTAWSLVEV 515



 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 127/332 (38%), Gaps = 66/332 (19%)

Query: 158 VHAHVLKLGHLHDIYVHNSLLGVYAAS-PRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNA 216
           +H   +K G   D Y    L+   A S        R+L       D   +  ++ G+  +
Sbjct: 24  IHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPEPDAFMFNTLVRGYSES 83

Query: 217 GKFDDALLAFEQMQYAG-VAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVL 275
            +  +++  F +M   G V P+  +    + A  +  ++  G  +H    ++G E  + +
Sbjct: 84  DEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHGLESHLFV 143

Query: 276 GTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIK----------------------- 312
           GT LI MY  CG VE   +VF  + + N+  WNAVI                        
Sbjct: 144 GTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDVAGAREIFDKMLVRNH 203

Query: 313 --------GLALAKSGEEAIRLFNRM-------------------------------EQD 333
                   G   A   E A R+F+ M                               ++ 
Sbjct: 204 TSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRA 263

Query: 334 GVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLR 393
           G+  +EV+L  VLSAC+ SG  + G+ + GF+ +  Y +I +V +   ++D+ +R G++ 
Sbjct: 264 GMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNN--ALIDMYSRCGNVP 321

Query: 394 EAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLE 425
            A  V   M        W S++      G  E
Sbjct: 322 MARLVFEGMQEKRCIVSWTSMIAGLAMHGQGE 353


>AT3G12770.1 | Symbols: MEF22 | mitochondrial editing factor  22 |
           chr3:4057027-4059193 REVERSE LENGTH=694
          Length = 694

 Score =  261 bits (666), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 135/392 (34%), Positives = 227/392 (57%), Gaps = 6/392 (1%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P   +  + +++ A++    +   +  L IF+ M +  + P+      +  + +     
Sbjct: 182 LPERTIVSWTAIVSAYAQ---NGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDL 238

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMG 212
            Q +S+HA V+K+G   +  +  SL  +YA   ++ +  + LFD+M   +++ W  MI G
Sbjct: 239 KQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQV-ATAKILFDKMKSPNLILWNAMISG 297

Query: 213 FRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELD 272
           +   G   +A+  F +M    V P+ +++ +A++ACA  G++E    +++++ R+ +  D
Sbjct: 298 YAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDD 357

Query: 273 VVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQ 332
           V + +ALIDM+AKCG VE    VF    +++V  W+A+I G  L     EAI L+  ME+
Sbjct: 358 VFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMER 417

Query: 333 DGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSL 392
            GV  ++VT L +L ACNHSG+V  G   F  + + K    P  +HYAC++DLL R+G L
Sbjct: 418 GGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMADHKIN--PQQQHYACVIDLLGRAGHL 475

Query: 393 REAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLY 452
            +A+EV++CMP  P   +WG+LL + K    +E  E+ A++L  ++P+N+ +YV LSNLY
Sbjct: 476 DQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLY 535

Query: 453 AEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEV 484
           A    WD V +VR  MK++ L KD+GCS VEV
Sbjct: 536 AAARLWDRVAEVRVRMKEKGLNKDVGCSWVEV 567



 Score =  174 bits (442), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 111/386 (28%), Positives = 196/386 (50%), Gaps = 10/386 (2%)

Query: 33  SDRAVTLLKDFCHSRLHVQQIQAQLILHNLQSNPTIAHHFITVCQSHXXXXXXXXXXXXX 92
           SD     L D    +  ++QI A+L++  LQ +  +    I    S              
Sbjct: 20  SDSFYASLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDD- 78

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +PRP +F +N++IR +S ++H  ++L    ++++M    + P+ +TFP L K+ S   H 
Sbjct: 79  LPRPQIFPWNAIIRGYSRNNHFQDALL---MYSNMQLARVSPDSFTFPHLLKACSGLSHL 135

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFD--EMTHRDVVSWTVMI 210
              + VHA V +LG   D++V N L+ +YA   RL S  R +F+   +  R +VSWT ++
Sbjct: 136 QMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGS-ARTVFEGLPLPERTIVSWTAIV 194

Query: 211 MGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWE 270
             +   G+  +AL  F QM+   V P+ V +V+ L A      ++ G  IH  + + G E
Sbjct: 195 SAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLE 254

Query: 271 LDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRM 330
           ++  L  +L  MYAKCG+V     +F  +K  N+  WNA+I G A      EAI +F+ M
Sbjct: 255 IEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEM 314

Query: 331 EQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSG 390
               VR D +++ + +SAC   G ++  R ++ ++  G+  +  +V   + ++D+ A+ G
Sbjct: 315 INKDVRPDTISITSAISACAQVGSLEQARSMYEYV--GRSDYRDDVFISSALIDMFAKCG 372

Query: 391 SLREAFEVMRCMPFDPTKAMWGSLLV 416
           S+ E   ++     D    +W +++V
Sbjct: 373 SV-EGARLVFDRTLDRDVVVWSAMIV 397


>AT2G13600.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:5671493-5673586 FORWARD
           LENGTH=697
          Length = 697

 Score =  260 bits (665), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 149/430 (34%), Positives = 223/430 (51%), Gaps = 43/430 (10%)

Query: 97  HVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQ 156
           +V  +NSLI  F     +  ++  L +F  M  + + P+  T   +  + ++       Q
Sbjct: 217 NVVSWNSLITCF---EQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQ 273

Query: 157 SVHAHVLKLGHL-HDIYVHNSLLGVYAASPRL---------------------------- 187
            VH  V+K   L +DI + N+ + +YA   R+                            
Sbjct: 274 EVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMA 333

Query: 188 --FSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNAL 245
                 R +F +M  R+VVSW  +I G+   G+ ++AL  F  ++   V P   +  N L
Sbjct: 334 ASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANIL 393

Query: 246 AACADSGAVEMGAWIH------DFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSV 299
            ACAD   + +G   H       F  ++G E D+ +G +LIDMY KCG VEEG  VF  +
Sbjct: 394 KACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKM 453

Query: 300 KEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGR 359
            E++  +WNA+I G A    G EA+ LF  M + G + D +T++ VLSAC H+G V+ GR
Sbjct: 454 MERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGR 513

Query: 360 QIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSK 419
             F  +    +G  P   HY CMVDLL R+G L EA  ++  MP  P   +WGSLL + K
Sbjct: 514 HYFSSMTR-DFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACK 572

Query: 420 SQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGC 479
              ++   ++VA KL+E+EP+NS  YV LSN+YAE+G+W+DV  VR  M+   +TK  GC
Sbjct: 573 VHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGC 632

Query: 480 SSVEVEEQGH 489
           S +++  QGH
Sbjct: 633 SWIKI--QGH 640



 Score =  133 bits (334), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 166/366 (45%), Gaps = 41/366 (11%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P      +NS++  F+    H      L  FA MH+   + N Y+F  +  + S     
Sbjct: 112 MPERDQCTWNSMVSGFAQ---HDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDM 168

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMG 212
            +   VH+ + K   L D+Y+ ++L+ +Y+    + +  +++FDEM  R+VVSW  +I  
Sbjct: 169 NKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNV-NDAQRVFDEMGDRNVVSWNSLITC 227

Query: 213 FRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNG-WEL 271
           F   G   +AL  F+ M  + V P+ VT+ + ++ACA   A+++G  +H  + +N     
Sbjct: 228 FEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRN 287

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSS-------------------------------VK 300
           D++L  A +DMYAKC R++E   +F S                               + 
Sbjct: 288 DIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMA 347

Query: 301 EKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQ 360
           E+NV +WNA+I G       EEA+ LF  ++++ V     +   +L AC     + +G Q
Sbjct: 348 ERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQ 407

Query: 361 IFGFLVEGKYGFIPNVKHYA----CMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLV 416
               +++  + F    +        ++D+  + G + E + V R M  +     W ++++
Sbjct: 408 AHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKM-MERDCVSWNAMII 466

Query: 417 SSKSQG 422
                G
Sbjct: 467 GFAQNG 472



 Score =  131 bits (329), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 146/322 (45%), Gaps = 37/322 (11%)

Query: 158 VHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAG 217
           VHA V+K G  ++I++ N L+  Y+    L    RQ+FD+M  R++ +W  ++ G    G
Sbjct: 42  VHASVIKSGFSNEIFIQNRLIDAYSKCGSLED-GRQVFDKMPQRNIYTWNSVVTGLTKLG 100

Query: 218 KFDDA-------------------------------LLAFEQMQYAGVAPNRVTMVNALA 246
             D+A                               L  F  M   G   N  +  + L+
Sbjct: 101 FLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLS 160

Query: 247 ACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFT 306
           AC+    +  G  +H  I ++ +  DV +G+AL+DMY+KCG V +  RVF  + ++NV +
Sbjct: 161 ACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVS 220

Query: 307 WNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLV 366
           WN++I          EA+ +F  M +  V  DEVTL +V+SAC     + +G+++ G +V
Sbjct: 221 WNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVV 280

Query: 367 EGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFD----PTKAMWGSLLVSSKSQG 422
           +       ++      VD+ A+   ++EA  +   MP       T  + G  + +S    
Sbjct: 281 KND-KLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAA 339

Query: 423 DLEFSEFVARKLVELEPANSAY 444
            L F++   R +V      + Y
Sbjct: 340 RLMFTKMAERNVVSWNALIAGY 361



 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 93/195 (47%), Gaps = 34/195 (17%)

Query: 259 WIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGL---- 314
           ++H  + ++G+  ++ +   LID Y+KCG +E+G +VF  + ++N++TWN+V+ GL    
Sbjct: 41  YVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLG 100

Query: 315 ---------------------------ALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLS 347
                                      A     EEA+  F  M ++G   +E +  +VLS
Sbjct: 101 FLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLS 160

Query: 348 ACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPT 407
           AC  SGL DM + +    +  K  F+ +V   + +VD+ ++ G++ +A  V   M  D  
Sbjct: 161 AC--SGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMG-DRN 217

Query: 408 KAMWGSLLVSSKSQG 422
              W SL+   +  G
Sbjct: 218 VVSWNSLITCFEQNG 232


>AT1G77170.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:28998133-28999536 REVERSE
           LENGTH=467
          Length = 467

 Score =  260 bits (665), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 129/382 (33%), Positives = 227/382 (59%), Gaps = 7/382 (1%)

Query: 96  PHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQA 155
           P  F++N+++R++     H + L  + ++  M R+T+LP+ Y+ P + K+      F   
Sbjct: 80  PIAFLWNNIMRSYIR---HESPLDAIQVYLGMVRSTVLPDRYSLPIVIKAAVQIHDFTLG 136

Query: 156 QSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRN 215
           + +H+  ++LG + D +  +  + +Y  +   F   R++FDE   R + SW  +I G  +
Sbjct: 137 KELHSVAVRLGFVGDEFCESGFITLYCKAGE-FENARKVFDENPERKLGSWNAIIGGLNH 195

Query: 216 AGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWE--LDV 273
           AG+ ++A+  F  M+ +G+ P+  TMV+  A+C   G + +   +H  + +   E   D+
Sbjct: 196 AGRANEAVEMFVDMKRSGLEPDDFTMVSVTASCGGLGDLSLAFQLHKCVLQAKTEEKSDI 255

Query: 274 VLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQD 333
           ++  +LIDMY KCGR++    +F  ++++NV +W+++I G A   +  EA+  F +M + 
Sbjct: 256 MMLNSLIDMYGKCGRMDLASHIFEEMRQRNVVSWSSMIVGYAANGNTLEALECFRQMREF 315

Query: 334 GVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLR 393
           GVR +++T + VLSAC H GLV+ G+  F  +++ ++   P + HY C+VDLL+R G L+
Sbjct: 316 GVRPNKITFVGVLSACVHGGLVEEGKTYFA-MMKSEFELEPGLSHYGCIVDLLSRDGQLK 374

Query: 394 EAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYA 453
           EA +V+  MP  P   +WG L+   +  GD+E +E+VA  +VELEP N   YV L+N+YA
Sbjct: 375 EAKKVVEEMPMKPNVMVWGCLMGGCEKFGDVEMAEWVAPYMVELEPWNDGVYVVLANVYA 434

Query: 454 EMGRWDDVEKVRGMMKDRQLTK 475
             G W DVE+VR +MK +++ K
Sbjct: 435 LRGMWKDVERVRKLMKTKKVAK 456


>AT2G03880.1 | Symbols: REME1 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:1181560-1183452 FORWARD
           LENGTH=630
          Length = 630

 Score =  259 bits (661), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 134/399 (33%), Positives = 233/399 (58%), Gaps = 14/399 (3%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P+ +V  + ++I A+S    H  +L  L +   M R+ + PN YT+  + +S +     
Sbjct: 122 MPQRNVISWTTMISAYSKCKIHQKALELLVL---MLRDNVRPNVYTYSSVLRSCNG---M 175

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYA--ASPRLFSLCRQLFDEMTHRDVVSWTVMI 210
           +  + +H  ++K G   D++V ++L+ V+A    P        +FDEM   D + W  +I
Sbjct: 176 SDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEP---EDALSVFDEMVTGDAIVWNSII 232

Query: 211 MGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWE 270
            GF    + D AL  F++M+ AG    + T+ + L AC     +E+G   H  I +  ++
Sbjct: 233 GGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK--YD 290

Query: 271 LDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRM 330
            D++L  AL+DMY KCG +E+ +RVF+ +KE++V TW+ +I GLA     +EA++LF RM
Sbjct: 291 QDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERM 350

Query: 331 EQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSG 390
           +  G + + +T++ VL AC+H+GL++ G   F  + +  YG  P  +HY CM+DLL ++G
Sbjct: 351 KSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSM-KKLYGIDPVREHYGCMIDLLGKAG 409

Query: 391 SLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSN 450
            L +A +++  M  +P    W +LL + + Q ++  +E+ A+K++ L+P ++  Y  LSN
Sbjct: 410 KLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSN 469

Query: 451 LYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
           +YA   +WD VE++R  M+DR + K+ GCS +EV +Q H
Sbjct: 470 IYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIH 508



 Score =  117 bits (293), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/237 (32%), Positives = 117/237 (49%), Gaps = 8/237 (3%)

Query: 166 GHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLA 225
           GH   +++ N L+ +Y     L +   QLFD+M  R+V+SWT MI  +        AL  
Sbjct: 91  GHRPMMFLVNVLINMYVKF-NLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALEL 149

Query: 226 FEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAK 285
              M    V PN  T  + L +C     V M   +H  I + G E DV + +ALID++AK
Sbjct: 150 LVLMLRDNVRPNVYTYSSVLRSCNGMSDVRM---LHCGIIKEGLESDVFVRSALIDVFAK 206

Query: 286 CGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAV 345
            G  E+ + VF  +   +   WN++I G A     + A+ LF RM++ G  A++ TL +V
Sbjct: 207 LGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSV 266

Query: 346 LSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCM 402
           L AC    L+++G Q    +V+     I N      +VD+  + GSL +A  V   M
Sbjct: 267 LRACTGLALLELGMQAHVHIVKYDQDLILN----NALVDMYCKCGSLEDALRVFNQM 319



 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 95/210 (45%), Gaps = 8/210 (3%)

Query: 222 ALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALID 281
           A+ A + +Q  G+  +  T    +  C  + AV  G  I   +  NG    + L   LI+
Sbjct: 45  AMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLIN 104

Query: 282 MYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVT 341
           MY K   + +  ++F  + ++NV +W  +I   +  K  ++A+ L   M +D VR +  T
Sbjct: 105 MYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYT 164

Query: 342 LLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRC 401
             +VL +CN  G+ D+     G + E   G   +V   + ++D+ A+ G   +A  V   
Sbjct: 165 YSSVLRSCN--GMSDVRMLHCGIIKE---GLESDVFVRSALIDVFAKLGEPEDALSVFDE 219

Query: 402 MPFDPTKAMWGSLL--VSSKSQGDLEFSEF 429
           M       +W S++   +  S+ D+    F
Sbjct: 220 M-VTGDAIVWNSIIGGFAQNSRSDVALELF 248


>AT5G08305.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:2670134-2671738 REVERSE
           LENGTH=534
          Length = 534

 Score =  258 bits (660), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 164/488 (33%), Positives = 258/488 (52%), Gaps = 39/488 (7%)

Query: 36  AVTLLKDFCHSRLHVQQIQAQLILHNL-QSNPTIAHHFITVCQSHXXXXXXXXXXXXXVP 94
           A ++L+  C S   + +I   LI   L +  P ++        S              + 
Sbjct: 10  AKSILRHQCKSMSELYKIHTLLITLGLSEEEPFVSQTLSFSALSSSGDVDYAYKFLSKLS 69

Query: 95  RPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQ 154
            P  + +N +IR FS+S +   S+   S++  M R  +LP+H T+PFL KS S   +   
Sbjct: 70  DPPNYGWNFVIRGFSNSRNPEKSI---SVYIQMLRFGLLPDHMTYPFLMKSSSRLSNRKL 126

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVY------AASPRLFS------------------- 189
             S+H  V+K G   D+++ N+L+ +Y      A++ +LF                    
Sbjct: 127 GGSLHCSVVKSGLEWDLFICNTLIHMYGSFRDQASARKLFDEMPHKNLVTWNSILDAYAK 186

Query: 190 -----LCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAP-NRVTMVN 243
                  R +FDEM+ RDVV+W+ MI G+   G+++ AL  F+QM   G +  N VTMV+
Sbjct: 187 SGDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVS 246

Query: 244 ALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVF--SSVKE 301
            + ACA  GA+  G  +H +I      L V+L T+LIDMYAKCG + +   VF  +SVKE
Sbjct: 247 VICACAHLGALNRGKTVHRYILDVHLPLTVILQTSLIDMYAKCGSIGDAWSVFYRASVKE 306

Query: 302 KNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQI 361
            +   WNA+I GLA      E+++LF++M +  +  DE+T L +L+AC+H GLV      
Sbjct: 307 TDALMWNAIIGGLASHGFIRESLQLFHKMRESKIDPDEITFLCLLAACSHGGLVKEAWHF 366

Query: 362 FGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQ 421
           F  L E   G  P  +HYACMVD+L+R+G +++A + +  MP  PT +M G+LL    + 
Sbjct: 367 FKSLKES--GAEPKSEHYACMVDVLSRAGLVKDAHDFISEMPIKPTGSMLGALLNGCINH 424

Query: 422 GDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSS 481
           G+LE +E V +KL+EL+P N   YV L+N+YA   ++     +R  M+ + + K  G S 
Sbjct: 425 GNLELAETVGKKLIELQPHNDGRYVGLANVYAINKQFRAARSMREAMEKKGVKKIAGHSI 484

Query: 482 VEVEEQGH 489
           ++++   H
Sbjct: 485 LDLDGTRH 492


>AT4G18840.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr4:10338719-10340356 REVERSE
           LENGTH=545
          Length = 545

 Score =  257 bits (657), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 146/450 (32%), Positives = 235/450 (52%), Gaps = 72/450 (16%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTP---LSIFAHMHRNTILPNHYTFPFLFKSLSAP 149
           +  P+ F  NS+IRA++      NS TP   L++F  M    + P+ Y+F F+ K+ +A 
Sbjct: 100 IGSPNGFTHNSVIRAYA------NSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAF 153

Query: 150 CHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAAS------------------------- 184
           C F + + +H   +K G + D++V N+L+ VY  S                         
Sbjct: 154 CGFEEGRQIHGLFIKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLL 213

Query: 185 -----PRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQM---------- 229
                  L    R LFDEM  R+V SW  MI G+  AG   +A   F+ M          
Sbjct: 214 SAYLEKGLVDEARALFDEMEERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNA 273

Query: 230 ---QYAGVA-------------------PNRVTMVNALAACADSGAVEMGAWIHDFIRRN 267
               YA V                    P+  T+V+ L+ACA  G++  G W+H +I ++
Sbjct: 274 MVTAYAHVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKH 333

Query: 268 GWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLF 327
           G E++  L TAL+DMY+KCG++++ + VF +  +++V TWN++I  L++   G++A+ +F
Sbjct: 334 GIEIEGFLATALVDMYSKCGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIF 393

Query: 328 NRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLA 387
           + M  +G + + +T + VLSACNH G++D  R++F  ++   Y   P ++HY CMVDLL 
Sbjct: 394 SEMVYEGFKPNGITFIGVLSACNHVGMLDQARKLFE-MMSSVYRVEPTIEHYGCMVDLLG 452

Query: 388 RSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVH 447
           R G + EA E++  +P D    +  SLL + K  G LE +E +A +L+EL   +S+ Y  
Sbjct: 453 RMGKIEEAEELVNEIPADEASILLESLLGACKRFGQLEQAERIANRLLELNLRDSSGYAQ 512

Query: 448 LSNLYAEMGRWDDVEKVRGMMKDRQLTKDL 477
           +SNLYA  GRW+ V   R  M+  ++ + L
Sbjct: 513 MSNLYASDGRWEKVIDGRRNMRAERVNRSL 542



 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 129/307 (42%), Gaps = 31/307 (10%)

Query: 152 FAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASP--RLFSLCRQLFDEMTHRDVVSWTVM 209
             + Q  HA +LK G  HD +  + L+   A +P  +  S    + + +   +  +   +
Sbjct: 52  LTEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGFTHNSV 111

Query: 210 IMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGW 269
           I  + N+   + AL  F +M    V P++ +    L ACA     E G  IH    ++G 
Sbjct: 112 IRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKSGL 171

Query: 270 ELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNR 329
             DV +   L+++Y + G  E   +V   +  ++  +WN+++         +EA  LF+ 
Sbjct: 172 VTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARALFDE 231

Query: 330 MEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARS 389
           ME+  V +       ++S    +GLV   +++F  +       + +V  +  MV   A  
Sbjct: 232 MEERNVESWNF----MISGYAAAGLVKEAKEVFDSMP------VRDVVSWNAMVTAYAHV 281

Query: 390 GSLREAFEVMRCMPFDPTKAMWGSLLVS---------SKSQGD----------LEFSEFV 430
           G   E  EV   M  D T+   G  LVS         S SQG+          +E   F+
Sbjct: 282 GCYNEVLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGIEIEGFL 341

Query: 431 ARKLVEL 437
           A  LV++
Sbjct: 342 ATALVDM 348


>AT2G33680.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:14249608-14251791 FORWARD
           LENGTH=727
          Length = 727

 Score =  257 bits (657), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 134/389 (34%), Positives = 222/389 (57%), Gaps = 5/389 (1%)

Query: 101 FNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHA 160
           +++++  +S    +  SL  + +F+ M    I P+ YT   +  + S  C+  + + +H+
Sbjct: 290 WSAMVTGYSQ---NGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHS 346

Query: 161 HVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFD 220
            +LKLG    ++   +L+ +YA +  L    R+ FD +  RDV  WT +I G+      +
Sbjct: 347 FLLKLGFERHLFATTALVDMYAKAGCLAD-ARKGFDCLQERDVALWTSLISGYVQNSDNE 405

Query: 221 DALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALI 280
           +AL+ + +M+ AG+ PN  TM + L AC+    +E+G  +H    ++G+ L+V +G+AL 
Sbjct: 406 EALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALS 465

Query: 281 DMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEV 340
            MY+KCG +E+G  VF     K+V +WNA+I GL+    G+EA+ LF  M  +G+  D+V
Sbjct: 466 TMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDV 525

Query: 341 TLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMR 400
           T + ++SAC+H G V+ G   F  + + + G  P V HYACMVDLL+R+G L+EA E + 
Sbjct: 526 TFVNIISACSHKGFVERGWFYFNMMSD-QIGLDPKVDHYACMVDLLSRAGQLKEAKEFIE 584

Query: 401 CMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDD 460
               D    +W  LL + K+ G  E   +   KL+ L    S+ YV LS +Y  +GR  D
Sbjct: 585 SANIDHGLCLWRILLSACKNHGKCELGVYAGEKLMALGSRESSTYVQLSGIYTALGRMRD 644

Query: 461 VEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
           VE+V   M+   ++K++GCS +E++ Q H
Sbjct: 645 VERVWKHMRANGVSKEVGCSWIELKNQYH 673



 Score =  158 bits (399), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 101/340 (29%), Positives = 176/340 (51%), Gaps = 8/340 (2%)

Query: 98  VFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQS 157
           V  +NSLI  +S +    +S T + +F  M    ILPN YT   +FK+ S+       + 
Sbjct: 80  VVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSSTVGRQ 139

Query: 158 VHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAG 217
            HA V+K+    DIYV  SL+G+Y  +  L     ++F  M  R+  +W+ M+ G+   G
Sbjct: 140 AHALVVKMSSFGDIYVDTSLVGMYCKAG-LVEDGLKVFAYMPERNTYTWSTMVSGYATRG 198

Query: 218 KFDDALLAFE---QMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVV 274
           + ++A+  F    + +  G   + V     L++ A +  V +G  IH    +NG    V 
Sbjct: 199 RVEEAIKVFNLFLREKEEGSDSDYV-FTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVA 257

Query: 275 LGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDG 334
           L  AL+ MY+KC  + E  ++F S  ++N  TW+A++ G +      EA++LF+RM   G
Sbjct: 258 LSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAG 317

Query: 335 VRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLRE 394
           ++  E T++ VL+AC+    ++ G+Q+  FL+  K GF  ++     +VD+ A++G L +
Sbjct: 318 IKPSEYTIVGVLNACSDICYLEEGKQLHSFLL--KLGFERHLFATTALVDMYAKAGCLAD 375

Query: 395 AFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKL 434
           A +   C+  +   A+W SL+       D E +  + R++
Sbjct: 376 ARKGFDCLQ-ERDVALWTSLISGYVQNSDNEEALILYRRM 414



 Score =  152 bits (384), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 182/355 (51%), Gaps = 9/355 (2%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P  + + +++++  ++       ++   ++F    +     + Y F  +  SL+A  + 
Sbjct: 179 MPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLR-EKEEGSDSDYVFTAVLSSLAATIYV 237

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMG 212
              + +H   +K G L  + + N+L+ +Y+    L   C+ +FD    R+ ++W+ M+ G
Sbjct: 238 GLGRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACK-MFDSSGDRNSITWSAMVTG 296

Query: 213 FRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELD 272
           +   G+  +A+  F +M  AG+ P+  T+V  L AC+D   +E G  +H F+ + G+E  
Sbjct: 297 YSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERH 356

Query: 273 VVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQ 332
           +   TAL+DMYAK G + +  + F  ++E++V  W ++I G       EEA+ L+ RM+ 
Sbjct: 357 LFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKT 416

Query: 333 DGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSL 392
            G+  ++ T+ +VL AC+    +++G+Q+ G  +  K+GF   V   + +  + ++ GSL
Sbjct: 417 AGIIPNDPTMASVLKACSSLATLELGKQVHGHTI--KHGFGLEVPIGSALSTMYSKCGSL 474

Query: 393 REAFEVMRCMPFDPTKAMWGSLL--VSSKSQGDLEFSEFVARKLVE-LEPANSAY 444
            +   V R  P +     W +++  +S   QGD E  E     L E +EP +  +
Sbjct: 475 EDGNLVFRRTP-NKDVVSWNAMISGLSHNGQGD-EALELFEEMLAEGMEPDDVTF 527



 Score =  108 bits (269), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 141/293 (48%), Gaps = 20/293 (6%)

Query: 151 HFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMI 210
           +    ++VH  +++ G    I   N L+  YA   +L +    +F+ +  +DVVSW  +I
Sbjct: 29  NLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKL-AKAHSIFNAIICKDVVSWNSLI 87

Query: 211 MGFRNAGKFDDA---LLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRN 267
            G+   G    +   +  F +M+   + PN  T+     A +   +  +G   H  + + 
Sbjct: 88  TGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKM 147

Query: 268 GWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLF 327
               D+ + T+L+ MY K G VE+G++VF+ + E+N +TW+ ++ G A     EEAI++F
Sbjct: 148 SSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVF 207

Query: 328 N---RMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVD 384
           N   R +++G  +D V   AVLS+   +  V +GRQI    +  K G +  V     +V 
Sbjct: 208 NLFLREKEEGSDSDYV-FTAVLSSLAATIYVGLGRQIHCITI--KNGLLGFVALSNALVT 264

Query: 385 LLARSGSLREAFEVMRCMPFDPT----KAMWGSLLVSSKSQGD-LEFSEFVAR 432
           + ++  SL EA     C  FD +       W +++      G+ LE  +  +R
Sbjct: 265 MYSKCESLNEA-----CKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSR 312



 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/234 (21%), Positives = 104/234 (44%), Gaps = 16/234 (6%)

Query: 236 PNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRV 295
           P+  T++  L   +    +  G  +H  I R G    +     L++ YAKCG++ +   +
Sbjct: 12  PHTSTLLKKLTHHSQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSI 71

Query: 296 FSSVKEKNVFTWNAVIKGLAL---AKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHS 352
           F+++  K+V +WN++I G +      S    ++LF  M    +  +  TL  +  A +  
Sbjct: 72  FNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSL 131

Query: 353 GLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWG 412
               +GRQ    +V  K     ++     +V +  ++G + +  +V   MP +     W 
Sbjct: 132 QSSTVGRQAHALVV--KMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMP-ERNTYTWS 188

Query: 413 SLLVSSKSQGDLE-----FSEFVARKLVELEPANSAYYVHLSNL----YAEMGR 457
           +++    ++G +E     F+ F+ R+  E   ++  +   LS+L    Y  +GR
Sbjct: 189 TMVSGYATRGRVEEAIKVFNLFL-REKEEGSDSDYVFTAVLSSLAATIYVGLGR 241


>AT1G06150.1 | Symbols: EMB1444 | basic helix-loop-helix (bHLH)
            DNA-binding superfamily protein | chr1:1867129-1873194
            REVERSE LENGTH=1322
          Length = 1322

 Score =  256 bits (654), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 151/503 (30%), Positives = 257/503 (51%), Gaps = 59/503 (11%)

Query: 44   CHSRLHVQQIQAQLILHNLQSNPTIAHHFITVCQSHXXXXXXXXXXXXXVPRPHVFIFNS 103
            C +   ++   A +I  +L  +  + + FIT C S              +  P+VF++N+
Sbjct: 783  CSTPKLLESALAAMIKTSLNQDCRLMNQFITACTSFKRLDLAVSTMTQ-MQEPNVFVYNA 841

Query: 104  LIRAF---------------------SHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPF- 141
            L + F                     S S + ++SL   S FA     ++  + + F F 
Sbjct: 842  LFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKASSFASRFGESLQAHIWKFGFG 901

Query: 142  --------LFKSLSAPCHFAQAQSVHAHVLKLGHLH------------DIYVHNSLLGVY 181
                    L    SA     +A+ V   + +   +             D+   NSL    
Sbjct: 902  FHVKIQTTLIDFYSATGRIREARKVFDEMPERDDIAWTTMVSAYRRVLDMDSANSLANQM 961

Query: 182  AASPRLFSLC--------------RQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFE 227
            +      S C                LF++M  +D++SWT MI G+    ++ +A+  F 
Sbjct: 962  SEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFY 1021

Query: 228  QMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCG 287
            +M   G+ P+ VTM   ++ACA  G +E+G  +H +  +NG+ LDV +G+AL+DMY+KCG
Sbjct: 1022 KMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCG 1081

Query: 288  RVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLS 347
             +E  + VF ++ +KN+F WN++I+GLA     +EA+++F +ME + V+ + VT ++V +
Sbjct: 1082 SLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFT 1141

Query: 348  ACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPT 407
            AC H+GLVD GR+I+  +++  Y  + NV+HY  MV L +++G + EA E++  M F+P 
Sbjct: 1142 ACTHAGLVDEGRRIYRSMID-DYSIVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPN 1200

Query: 408  KAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGM 467
              +WG+LL   +   +L  +E    KL+ LEP NS YY  L ++YAE  RW DV ++RG 
Sbjct: 1201 AVIWGALLDGCRIHKNLVIAEIAFNKLMVLEPMNSGYYFLLVSMYAEQNRWRDVAEIRGR 1260

Query: 468  MKDRQLTKDL-GCSSVEVEEQGH 489
            M++  + K   G SS+ ++++ H
Sbjct: 1261 MRELGIEKICPGTSSIRIDKRDH 1283


>AT5G61800.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:24830054-24831553 REVERSE
           LENGTH=499
          Length = 499

 Score =  255 bits (652), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 151/492 (30%), Positives = 242/492 (49%), Gaps = 52/492 (10%)

Query: 39  LLKDFCHSRLHVQQIQAQLIL-----HNLQSNPTIAHHFITV------CQSHXXXXXXXX 87
           LLK  C +  H+ Q  AQ I      ++ + N   A+    +        +         
Sbjct: 10  LLK-LCRTLKHLHQFHAQFITSGRISNDFKQNSVFANVLFAITSISPSASASKEVVSYAT 68

Query: 88  XXXXXVPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLS 147
                +  P  F FN++IR  +   H  +SL+    F  M R ++ P+ +TFPF+FK+ +
Sbjct: 69  SVFRFITNPSTFCFNTIIRICTL--HEPSSLSSKRFFVEMRRRSVPPDFHTFPFVFKACA 126

Query: 148 APCH--FAQAQSVHAHVLKLGHLHDIYVHNSLLGVYA----------------------- 182
           A  +      +++H   L+ G L D++  N+L+ VY+                       
Sbjct: 127 AKKNGDLTLVKTLHCQALRFGLLSDLFTLNTLIRVYSLIAPIDSALQLFDENPQRDVVTY 186

Query: 183 -------ASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVA 235
                     R     R+LFD M  RD+VSW  +I G+       +A+  F++M   G+ 
Sbjct: 187 NVLIDGLVKAREIVRARELFDSMPLRDLVSWNSLISGYAQMNHCREAIKLFDEMVALGLK 246

Query: 236 PNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRV 295
           P+ V +V+ L+ACA SG  + G  IHD+ +R    +D  L T L+D YAKCG ++  + +
Sbjct: 247 PDNVAIVSTLSACAQSGDWQKGKAIHDYTKRKRLFIDSFLATGLVDFYAKCGFIDTAMEI 306

Query: 296 FSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLV 355
           F    +K +FTWNA+I GLA+  +GE  +  F +M   G++ D VT ++VL  C+HSGLV
Sbjct: 307 FELCSDKTLFTWNAMITGLAMHGNGELTVDYFRKMVSSGIKPDGVTFISVLVGCSHSGLV 366

Query: 356 DMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKA----MW 411
           D  R +F  +    Y     +KHY CM DLL R+G + EA E++  MP D         W
Sbjct: 367 DEARNLFDQM-RSLYDVNREMKHYGCMADLLGRAGLIEEAAEMIEQMPKDGGNREKLLAW 425

Query: 412 GSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMM-KD 470
             LL   +  G++E +E  A ++  L P +   Y  +  +YA   RW++V KVR ++ +D
Sbjct: 426 SGLLGGCRIHGNIEIAEKAANRVKALSPEDGGVYKVMVEMYANAERWEEVVKVREIIDRD 485

Query: 471 RQLTKDLGCSSV 482
           +++ K++G S V
Sbjct: 486 KKVKKNVGFSKV 497


>AT4G19191.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:10496228-10498192 FORWARD
           LENGTH=654
          Length = 654

 Score =  255 bits (651), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 144/397 (36%), Positives = 215/397 (54%), Gaps = 6/397 (1%)

Query: 98  VFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQS 157
           V  +NS+ +A+S       +     ++  M R    P+  TF  L  S   P    Q + 
Sbjct: 221 VVSWNSMFKAYSV---FGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLTQGRL 277

Query: 158 VHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAG 217
           +H+H + LG   DI   N+ + +Y+ S    S  R LFD MT R  VSWTVMI G+   G
Sbjct: 278 IHSHAIHLGTDQDIEAINTFISMYSKSEDTCS-ARLLFDIMTSRTCVSWTVMISGYAEKG 336

Query: 218 KFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELD-VVLG 276
             D+AL  F  M  +G  P+ VT+++ ++ C   G++E G WI       G + D V++ 
Sbjct: 337 DMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARADIYGCKRDNVMIC 396

Query: 277 TALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVR 336
            ALIDMY+KCG + E   +F +  EK V TW  +I G AL     EA++LF++M     +
Sbjct: 397 NALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMIDLDYK 456

Query: 337 ADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAF 396
            + +T LAVL AC HSG ++ G + F  +++  Y   P + HY+CMVDLL R G L EA 
Sbjct: 457 PNHITFLAVLQACAHSGSLEKGWEYF-HIMKQVYNISPGLDHYSCMVDLLGRKGKLEEAL 515

Query: 397 EVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMG 456
           E++R M   P   +WG+LL + K   +++ +E  A  L  LEP  +A YV ++N+YA  G
Sbjct: 516 ELIRNMSAKPDAGIWGALLNACKIHRNVKIAEQAAESLFNLEPQMAAPYVEMANIYAAAG 575

Query: 457 RWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGHTSQV 493
            WD   ++R +MK R + K  G S ++V  + H+  V
Sbjct: 576 MWDGFARIRSIMKQRNIKKYPGESVIQVNGKNHSFTV 612



 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/316 (21%), Positives = 145/316 (45%), Gaps = 8/316 (2%)

Query: 113 HHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIY 172
           + ++ +  L +F  M R    PN++TFPF+ K+ +        + VHAH++K     D++
Sbjct: 29  NRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVHAHLIKSPFWSDVF 88

Query: 173 VHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYA 232
           V  + + ++     +     ++F+ M  RD  +W  M+ GF  +G  D A   F +M+  
Sbjct: 89  VGTATVDMFVKCNSV-DYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSLFREMRLN 147

Query: 233 GVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEG 292
            + P+ VT++  + + +   ++++   +H    R G ++ V +    I  Y KCG ++  
Sbjct: 148 EITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDSA 207

Query: 293 VRVFSSVK--EKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACN 350
             VF ++   ++ V +WN++ K  ++     +A  L+  M ++  + D  T + + ++C 
Sbjct: 208 KLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQ 267

Query: 351 HSGLVDMGRQIFGFLVE-GKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKA 409
           +   +  GR I    +  G    I  +  +  M      + S R  F++M       T  
Sbjct: 268 NPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMT----SRTCV 323

Query: 410 MWGSLLVSSKSQGDLE 425
            W  ++     +GD++
Sbjct: 324 SWTVMISGYAEKGDMD 339



 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 151/349 (43%), Gaps = 10/349 (2%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P      +N+++  F  S H   +    S+F  M  N I P+  T   L +S S     
Sbjct: 113 MPERDATTWNAMLSGFCQSGHTDKAF---SLFREMRLNEITPDSVTVMTLIQSASFEKSL 169

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTH--RDVVSWTVMI 210
              +++HA  ++LG    + V N+ +  Y     L S  + +F+ +    R VVSW  M 
Sbjct: 170 KLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDS-AKLVFEAIDRGDRTVVSWNSMF 228

Query: 211 MGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWE 270
             +   G+  DA   +  M      P+  T +N  A+C +   +  G  IH      G +
Sbjct: 229 KAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTD 288

Query: 271 LDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRM 330
            D+      I MY+K         +F  +  +   +W  +I G A     +EA+ LF+ M
Sbjct: 289 QDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAM 348

Query: 331 EQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFI-PNVKHYACMVDLLARS 389
            + G + D VTLL+++S C   G ++ G+ I        YG    NV     ++D+ ++ 
Sbjct: 349 IKSGEKPDLVTLLSLISGCGKFGSLETGKWIDA--RADIYGCKRDNVMICNALIDMYSKC 406

Query: 390 GSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELE 438
           GS+ EA ++    P + T   W +++      G    +  +  K+++L+
Sbjct: 407 GSIHEARDIFDNTP-EKTVVTWTTMIAGYALNGIFLEALKLFSKMIDLD 454



 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 6/160 (3%)

Query: 192 RQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACA-- 249
           R+L+       V +W + I    N     ++LL F +M+  G  PN  T      ACA  
Sbjct: 6   RRLYRISGLSSVNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARL 65

Query: 250 -DSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWN 308
            D G  EM   +H  + ++ +  DV +GTA +DM+ KC  V+   +VF  + E++  TWN
Sbjct: 66  ADVGCCEM---VHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWN 122

Query: 309 AVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSA 348
           A++ G   +   ++A  LF  M  + +  D VT++ ++ +
Sbjct: 123 AMLSGFCQSGHTDKAFSLFREMRLNEITPDSVTVMTLIQS 162


>AT1G31920.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:11461864-11463684 REVERSE
           LENGTH=606
          Length = 606

 Score =  254 bits (649), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 131/399 (32%), Positives = 229/399 (57%), Gaps = 8/399 (2%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +  P  F FN++IR + +      +L     +  M +    P+++T+P L K+ +     
Sbjct: 92  IDDPCTFDFNTMIRGYVNVMSFEEALC---FYNEMMQRGNEPDNFTYPCLLKACTRLKSI 148

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMG 212
            + + +H  V KLG   D++V NSL+ +Y     +  L   +F+++  +   SW+ M+  
Sbjct: 149 REGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEM-ELSSAVFEKLESKTAASWSSMVSA 207

Query: 213 FRNAGKFDDALLAFEQM-QYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
               G + + LL F  M     +      MV+AL ACA++GA+ +G  IH F+ RN  EL
Sbjct: 208 RAGMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISEL 267

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRME 331
           ++++ T+L+DMY KCG +++ + +F  ++++N  T++A+I GLAL   GE A+R+F++M 
Sbjct: 268 NIIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMFSKMI 327

Query: 332 QDGVRADEVTLLAVLSACNHSGLVDMGRQIFG-FLVEGKYGFIPNVKHYACMVDLLARSG 390
           ++G+  D V  ++VL+AC+HSGLV  GR++F   L EGK    P  +HY C+VDLL R+G
Sbjct: 328 KEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVE--PTAEHYGCLVDLLGRAG 385

Query: 391 SLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSN 450
            L EA E ++ +P +    +W + L   + + ++E  +  A++L++L   N   Y+ +SN
Sbjct: 386 LLEEALETIQSIPIEKNDVIWRTFLSQCRVRQNIELGQIAAQELLKLSSHNPGDYLLISN 445

Query: 451 LYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
           LY++   WDDV + R  +  + L +  G S VE++ + H
Sbjct: 446 LYSQGQMWDDVARTRTEIAIKGLKQTPGFSIVELKGKTH 484


>AT4G30700.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:14962617-14964995 REVERSE
           LENGTH=792
          Length = 792

 Score =  254 bits (649), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 138/395 (34%), Positives = 213/395 (53%), Gaps = 8/395 (2%)

Query: 95  RPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQ 154
           +P +  +N++I  ++ +     SL   S+F  +  +       T   L   +    H   
Sbjct: 284 KPDIVAYNAMIHGYTSNGETELSL---SLFKELMLSGARLRSSTLVSL---VPVSGHLML 337

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFR 214
             ++H + LK   L    V  +L  VY+    + S  R+LFDE   + + SW  MI G+ 
Sbjct: 338 IYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIES-ARKLFDESPEKSLPSWNAMISGYT 396

Query: 215 NAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVV 274
             G  +DA+  F +MQ +  +PN VT+   L+ACA  GA+ +G W+HD +R   +E  + 
Sbjct: 397 QNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIY 456

Query: 275 LGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDG 334
           + TALI MYAKCG + E  R+F  + +KN  TWN +I G  L   G+EA+ +F  M   G
Sbjct: 457 VSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSG 516

Query: 335 VRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLRE 394
           +    VT L VL AC+H+GLV  G +IF  ++  +YGF P+VKHYACMVD+L R+G L+ 
Sbjct: 517 ITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIH-RYGFEPSVKHYACMVDILGRAGHLQR 575

Query: 395 AFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAE 454
           A + +  M  +P  ++W +LL + +   D   +  V+ KL EL+P N  Y+V LSN+++ 
Sbjct: 576 ALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSA 635

Query: 455 MGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
              +     VR   K R+L K  G + +E+ E  H
Sbjct: 636 DRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPH 670



 Score =  119 bits (297), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 174/382 (45%), Gaps = 19/382 (4%)

Query: 49  HVQQIQAQLILHNLQSNPTIAHHFITVCQSHXXXXXXXXXXXXXVPRPHVFIFNSLIRAF 108
           H+ Q  AQ+ILH  +++ ++    +T   S              V RP VF+FN L+R F
Sbjct: 35  HLAQTHAQIILHGFRNDISLLTK-LTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGF 93

Query: 109 SHSHHHHNSLTPLSIFAHMHRNTIL-PNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGH 167
           S +   H+SL   S+FAH+ ++T L PN  T+ F   + S        + +H   +  G 
Sbjct: 94  SVNESPHSSL---SVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGC 150

Query: 168 LHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFE 227
             ++ + ++++ +Y    R+    R++FD M  +D + W  MI G+R    + +++  F 
Sbjct: 151 DSELLLGSNIVKMYFKFWRVED-ARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFR 209

Query: 228 QM-QYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNG-WELDVVLGTALIDMYAK 285
            +   +    +  T+++ L A A+   + +G  IH    + G +  D VL T  I +Y+K
Sbjct: 210 DLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVL-TGFISLYSK 268

Query: 286 CGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAV 345
           CG+++ G  +F   ++ ++  +NA+I G       E ++ LF  +   G R    TL+++
Sbjct: 269 CGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSL 328

Query: 346 LSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFD 405
           +    H  L+     I G+ ++  +     + H +    L      L E     +     
Sbjct: 329 VPVSGHLMLI---YAIHGYCLKSNF-----LSHASVSTALTTVYSKLNEIESARKLFDES 380

Query: 406 PTKAM--WGSLLVSSKSQGDLE 425
           P K++  W +++      G  E
Sbjct: 381 PEKSLPSWNAMISGYTQNGLTE 402


>AT5G15300.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:4968384-4970030 REVERSE
           LENGTH=548
          Length = 548

 Score =  253 bits (646), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 164/520 (31%), Positives = 257/520 (49%), Gaps = 74/520 (14%)

Query: 44  CHSRLHVQQIQAQLILHNLQSNPTIAHHFI-TVCQSHXXXXXXXXXXXXXVPRPHVFIFN 102
           C +   ++QI A ++++ L SN ++    I +   S              +P+P V I N
Sbjct: 22  CKNIRTLKQIHASMVVNGLMSNLSVVGELIYSASLSVPGALKYAHKLFDEIPKPDVSICN 81

Query: 103 SLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHV 162
            ++R  + S     ++   S++  M +  + P+ YTF F+ K+ S     +   + H  V
Sbjct: 82  HVLRGSAQSMKPEKTV---SLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKV 138

Query: 163 LKLGHLHDIYVHNSL---------LGV----------------------YAASPRLFSLC 191
           ++ G + + YV N+L         LG+                      YA   ++    
Sbjct: 139 VRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAM 198

Query: 192 RQLFDEM-------------------------------THRDVVSWTVMIMGFRNAGKFD 220
           R LFDEM                               T +DVV+W  MI G+ N G   
Sbjct: 199 R-LFDEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPK 257

Query: 221 DALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGW-ELDVVLGT-- 277
           +AL  F++M+ AG  P+ VT+++ L+ACA  G +E G  +H +I         + +GT  
Sbjct: 258 EALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPI 317

Query: 278 --ALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGV 335
             ALIDMYAKCG ++  + VF  VK++++ TWN +I GLAL  + E +I +F  M++  V
Sbjct: 318 WNALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALHHA-EGSIEMFEEMQRLKV 376

Query: 336 RADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREA 395
             +EVT + V+ AC+HSG VD GR+ F  L+   Y   PN+KHY CMVD+L R+G L EA
Sbjct: 377 WPNEVTFIGVILACSHSGRVDEGRKYFS-LMRDMYNIEPNIKHYGCMVDMLGRAGQLEEA 435

Query: 396 FEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEM 455
           F  +  M  +P   +W +LL + K  G++E  ++   KL+ +    S  YV LSN+YA  
Sbjct: 436 FMFVESMKIEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYVLLSNIYAST 495

Query: 456 GRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGHTSQVLL 495
           G+WD V+KVR M  D ++ K  G S +E ++     + LL
Sbjct: 496 GQWDGVQKVRKMFDDTRVKKPTGVSLIEEDDDKLMMRYLL 535


>AT3G46790.1 | Symbols: CRR2 | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:17231975-17233948 REVERSE
           LENGTH=657
          Length = 657

 Score =  252 bits (644), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 134/399 (33%), Positives = 236/399 (59%), Gaps = 11/399 (2%)

Query: 98  VFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKS-LSAPC---HFA 153
           ++++N+L RA + + H    L    ++  M+R  +  + +T+ ++ K+ +++ C   H  
Sbjct: 143 IYVWNALFRALTLAGHGEEVL---GLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLM 199

Query: 154 QAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGF 213
           + + +HAH+ + G+   +Y+  +L+ +YA           +F  M  R+VVSW+ MI  +
Sbjct: 200 KGKEIHAHLTRRGYSSHVYIMTTLVDMYARFG-CVDYASYVFGGMPVRNVVSWSAMIACY 258

Query: 214 RNAGKFDDALLAFEQM--QYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
              GK  +AL  F +M  +    +PN VTMV+ L ACA   A+E G  IH +I R G + 
Sbjct: 259 AKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDS 318

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRME 331
            + + +AL+ MY +CG++E G RVF  + +++V +WN++I    +   G++AI++F  M 
Sbjct: 319 ILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEML 378

Query: 332 QDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGS 391
            +G     VT ++VL AC+H GLV+ G+++F  +    +G  P ++HYACMVDLL R+  
Sbjct: 379 ANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWR-DHGIKPQIEHYACMVDLLGRANR 437

Query: 392 LREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNL 451
           L EA ++++ M  +P   +WGSLL S +  G++E +E  +R+L  LEP N+  YV L+++
Sbjct: 438 LDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADI 497

Query: 452 YAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGHT 490
           YAE   WD+V++V+ +++ R L K  G   +EV  + ++
Sbjct: 498 YAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYS 536



 Score =  106 bits (265), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 130/296 (43%), Gaps = 12/296 (4%)

Query: 134 PNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQ 193
           P+  T+  L          + A  VH H+L  G   D ++   L+G+Y+    +    R+
Sbjct: 75  PSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSV-DYARK 133

Query: 194 LFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGA 253
           +FD+   R +  W  +      AG  ++ L  + +M   GV  +R T    L AC  S  
Sbjct: 134 VFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASEC 193

Query: 254 ----VEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNA 309
               +  G  IH  + R G+   V + T L+DMYA+ G V+    VF  +  +NV +W+A
Sbjct: 194 TVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSA 253

Query: 310 VIKGLALAKSGEEAIRLFNRM--EQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLV- 366
           +I   A      EA+R F  M  E      + VT+++VL AC     ++ G+ I G+++ 
Sbjct: 254 MIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILR 313

Query: 367 EGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQG 422
            G    +P +   + +V +  R G L     V   M  D     W SL+ S    G
Sbjct: 314 RGLDSILPVI---SALVTMYGRCGKLEVGQRVFDRM-HDRDVVSWNSLISSYGVHG 365



 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 127/314 (40%), Gaps = 53/314 (16%)

Query: 204 VSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDF 263
           +S   +I      GK   A+    Q      +P++ T    +  C    ++     +H  
Sbjct: 47  ISNNQLIQSLCKEGKLKQAIRVLSQES----SPSQQTYELLILCCGHRSSLSDALRVHRH 102

Query: 264 IRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEA 323
           I  NG + D  L T LI MY+  G V+   +VF   +++ ++ WNA+ + L LA  GEE 
Sbjct: 103 ILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEV 162

Query: 324 IRLFNRMEQDGVRADEVTLLAVLSAC-------NH-----------------------SG 353
           + L+ +M + GV +D  T   VL AC       NH                       + 
Sbjct: 163 LGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTT 222

Query: 354 LVDMGRQIFGFLVEGKYGF----IPNVKHYACMVDLLARSGSLREAFEVMRCMPFD---- 405
           LVDM  + FG +    Y F    + NV  ++ M+   A++G   EA    R M  +    
Sbjct: 223 LVDMYAR-FGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDS 281

Query: 406 -PTKAMWGSLLVSSKS-----QGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWD 459
            P      S+L +  S     QG L     + R L  + P  SA    L  +Y   G+ +
Sbjct: 282 SPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISA----LVTMYGRCGKLE 337

Query: 460 DVEKVRGMMKDRQL 473
             ++V   M DR +
Sbjct: 338 VGQRVFDRMHDRDV 351


>AT3G04750.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:1301391-1303376 REVERSE
           LENGTH=661
          Length = 661

 Score =  252 bits (643), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 145/426 (34%), Positives = 226/426 (53%), Gaps = 41/426 (9%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P P V  FN +I  ++       SL  L ++  M  + I P+ YT   L          
Sbjct: 192 MPHPDVSSFNVMIVGYAKQGF---SLEALKLYFKMVSDGIEPDEYTVLSLLVCCGHLSDI 248

Query: 153 AQAQSVHAHVLKLGHLH--DIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMI 210
              + VH  + + G ++  ++ + N+LL +Y        L ++ FD M  +D+ SW  M+
Sbjct: 249 RLGKGVHGWIERRGPVYSSNLILSNALLDMYFKCKE-SGLAKRAFDAMKKKDMRSWNTMV 307

Query: 211 MGFRNAGKFDDALLAFEQMQ---------------------------------YAGVAPN 237
           +GF   G  + A   F+QM                                     V P+
Sbjct: 308 VGFVRLGDMEAAQAVFDQMPKRDLVSWNSLLFGYSKKGCDQRTVRELFYEMTIVEKVKPD 367

Query: 238 RVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFS 297
           RVTMV+ ++  A++G +  G W+H  + R   + D  L +ALIDMY KCG +E    VF 
Sbjct: 368 RVTMVSLISGAANNGELSHGRWVHGLVIRLQLKGDAFLSSALIDMYCKCGIIERAFMVFK 427

Query: 298 SVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDM 357
           +  EK+V  W ++I GLA   +G++A++LF RM+++GV  + VTLLAVL+AC+HSGLV+ 
Sbjct: 428 TATEKDVALWTSMITGLAFHGNGQQALQLFGRMQEEGVTPNNVTLLAVLTACSHSGLVEE 487

Query: 358 GRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFE-VMRCMPFDPTKAMWGSLLV 416
           G  +F  + + K+GF P  +HY  +VDLL R+G + EA + V + MP  P+++MWGS+L 
Sbjct: 488 GLHVFNHM-KDKFGFDPETEHYGSLVDLLCRAGRVEEAKDIVQKKMPMRPSQSMWGSILS 546

Query: 417 SSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKD 476
           + +   D+E +E    +L++LEP     YV LSN+YA +GRW   +K R  M++R + K 
Sbjct: 547 ACRGGEDIETAELALTELLKLEPEKEGGYVLLSNIYATVGRWGYSDKTREAMENRGVKKT 606

Query: 477 LGCSSV 482
            G SSV
Sbjct: 607 AGYSSV 612



 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/427 (23%), Positives = 195/427 (45%), Gaps = 51/427 (11%)

Query: 35  RAVTLLKDFCHSRLHVQQIQAQLILHNL--QSNPTIAHHFITVCQSHXXXXXXXXXXXXX 92
           +++ LL++ C+SR   +Q+ AQ++  NL   + P     F +                  
Sbjct: 36  QSLVLLEN-CNSRNQFKQVLAQIMRFNLICDTFPMSRLIFFSAITYPENLDLAKLLFLNF 94

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
            P P+VF++N++I A S S +         +++ M R+ + P+  TF +L K   A    
Sbjct: 95  TPNPNVFVYNTMISAVSSSKNE-----CFGLYSSMIRHRVSPDRQTFLYLMK---ASSFL 146

Query: 153 AQAQSVHAHVLKLGHLH-DIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIM 211
           ++ + +H H++  G L    Y+ NSL+  Y      F +  ++F  M H DV S+ VMI+
Sbjct: 147 SEVKQIHCHIIVSGCLSLGNYLWNSLVKFYMELGN-FGVAEKVFARMPHPDVSSFNVMIV 205

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNG--W 269
           G+   G   +AL  + +M   G+ P+  T+++ L  C     + +G  +H +I R G  +
Sbjct: 206 GYAKQGFSLEALKLYFKMVSDGIEPDEYTVLSLLVCCGHLSDIRLGKGVHGWIERRGPVY 265

Query: 270 ELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNR 329
             +++L  AL+DMY KC       R F ++K+K++ +WN ++ G       E A  +F++
Sbjct: 266 SSNLILSNALLDMYFKCKESGLAKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQ 325

Query: 330 MEQ---------------------------------DGVRADEVTLLAVLSACNHSGLVD 356
           M +                                 + V+ D VT+++++S   ++G + 
Sbjct: 326 MPKRDLVSWNSLLFGYSKKGCDQRTVRELFYEMTIVEKVKPDRVTMVSLISGAANNGELS 385

Query: 357 MGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLV 416
            GR + G ++  +     +    + ++D+  + G +  AF V +    +   A+W S++ 
Sbjct: 386 HGRWVHGLVI--RLQLKGDAFLSSALIDMYCKCGIIERAFMVFKTAT-EKDVALWTSMIT 442

Query: 417 SSKSQGD 423
                G+
Sbjct: 443 GLAFHGN 449



 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 131/293 (44%), Gaps = 20/293 (6%)

Query: 154 QAQSVHAHVLKLGHLHDIYVHNSLLGVYAAS-PRLFSLCRQLFDEMT-HRDVVSWTVMIM 211
           Q + V A +++   + D +  + L+   A + P    L + LF   T + +V  +  MI 
Sbjct: 49  QFKQVLAQIMRFNLICDTFPMSRLIFFSAITYPENLDLAKLLFLNFTPNPNVFVYNTMIS 108

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNG-WE 270
              ++   ++    +  M    V+P+R T +  + A +    V+    IH  I  +G   
Sbjct: 109 AVSSSK--NECFGLYSSMIRHRVSPDRQTFLYLMKASSFLSEVKQ---IHCHIIVSGCLS 163

Query: 271 LDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRM 330
           L   L  +L+  Y + G      +VF+ +   +V ++N +I G A      EA++L+ +M
Sbjct: 164 LGNYLWNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKM 223

Query: 331 EQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLAR-- 388
             DG+  DE T+L++L  C H   + +G+ + G++      +  N+     ++D+  +  
Sbjct: 224 VSDGIEPDEYTVLSLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILSNALLDMYFKCK 283

Query: 389 -SGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLE-----FSEFVARKLV 435
            SG  + AF+ M+          W +++V     GD+E     F +   R LV
Sbjct: 284 ESGLAKRAFDAMK----KKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPKRDLV 332


>AT4G38010.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr4:17859582-17861261 REVERSE
           LENGTH=559
          Length = 559

 Score =  251 bits (642), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 135/393 (34%), Positives = 223/393 (56%), Gaps = 9/393 (2%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P   V  +  +I  F+ +  +  +L   S      +  + PN  T+  +  S       
Sbjct: 167 MPVRDVVSWTGIITGFTRTGLYKEALDTFS------KMDVEPNLATYVCVLVSSGRVGCL 220

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMG 212
           +  + +H  +LK   L  +   N+L+ +Y    +L    R +F E+  +D VSW  MI G
Sbjct: 221 SLGKGIHGLILKRASLISLETGNALIDMYVKCEQLSDAMR-VFGELEKKDKVSWNSMISG 279

Query: 213 FRNAGKFDDALLAFEQMQYA-GVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
             +  +  +A+  F  MQ + G+ P+   + + L+ACA  GAV+ G W+H++I   G + 
Sbjct: 280 LVHCERSKEAIDLFSLMQTSSGIKPDGHILTSVLSACASLGAVDHGRWVHEYILTAGIKW 339

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRME 331
           D  +GTA++DMYAKCG +E  + +F+ ++ KNVFTWNA++ GLA+   G E++R F  M 
Sbjct: 340 DTHIGTAIVDMYAKCGYIETALEIFNGIRSKNVFTWNALLGGLAIHGHGLESLRYFEEMV 399

Query: 332 QDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGS 391
           + G + + VT LA L+AC H+GLVD GR+ F  +   +Y   P ++HY CM+DLL R+G 
Sbjct: 400 KLGFKPNLVTFLAALNACCHTGLVDEGRRYFHKMKSREYNLFPKLEHYGCMIDLLCRAGL 459

Query: 392 LREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDL-EFSEFVARKLVELEPANSAYYVHLSN 450
           L EA E+++ MP  P   + G++L + K++G L E  + +    +++E  +S  YV LSN
Sbjct: 460 LDEALELVKAMPVKPDVRICGAILSACKNRGTLMELPKEILDSFLDIEFEDSGVYVLLSN 519

Query: 451 LYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVE 483
           ++A   RWDDV ++R +MK + ++K  G S +E
Sbjct: 520 IFAANRRWDDVARIRRLMKVKGISKVPGSSYIE 552



 Score =  167 bits (423), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 108/357 (30%), Positives = 175/357 (49%), Gaps = 11/357 (3%)

Query: 44  CHSRLHVQQIQAQLILHNLQSNPTIAHHFIT-VCQSHXXXXXXXXXXXXXVPRPHVFIFN 102
           C S    +QIQ QLI  +L  +  I +  +T + +S                    F +N
Sbjct: 16  CSSLRVFKQIQTQLITRDLLRDDLIINKVVTFLGKSADFASYSSVILHSIRSVLSSFSYN 75

Query: 103 SLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHV 162
           +L+ +++       ++     F     N   P+ +TFP +FK+        + + +H  V
Sbjct: 76  TLLSSYAVCDKPRVTIFAYKTFVS---NGFSPDMFTFPPVFKACGKFSGIREGKQIHGIV 132

Query: 163 LKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDA 222
            K+G   DIYV NSL+  Y       + C+ +F EM  RDVVSWT +I GF   G + +A
Sbjct: 133 TKMGFYDDIYVQNSLVHFYGVCGESRNACK-VFGEMPVRDVVSWTGIITGFTRTGLYKEA 191

Query: 223 LLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDM 282
           L  F +M    V PN  T V  L +    G + +G  IH  I +    + +  G ALIDM
Sbjct: 192 LDTFSKMD---VEPNLATYVCVLVSSGRVGCLSLGKGIHGLILKRASLISLETGNALIDM 248

Query: 283 YAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRME-QDGVRADEVT 341
           Y KC ++ + +RVF  +++K+  +WN++I GL   +  +EAI LF+ M+   G++ D   
Sbjct: 249 YVKCEQLSDAMRVFGELEKKDKVSWNSMISGLVHCERSKEAIDLFSLMQTSSGIKPDGHI 308

Query: 342 LLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEV 398
           L +VLSAC   G VD GR +  +++     +  ++     +VD+ A+ G +  A E+
Sbjct: 309 LTSVLSACASLGAVDHGRWVHEYILTAGIKWDTHIG--TAIVDMYAKCGYIETALEI 363



 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/211 (20%), Positives = 91/211 (43%), Gaps = 6/211 (2%)

Query: 205 SWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFI 264
           S+  ++  +    K    + A++     G +P+  T      AC     +  G  IH  +
Sbjct: 73  SYNTLLSSYAVCDKPRVTIFAYKTFVSNGFSPDMFTFPPVFKACGKFSGIREGKQIHGIV 132

Query: 265 RRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAI 324
            + G+  D+ +  +L+  Y  CG      +VF  +  ++V +W  +I G       +EA+
Sbjct: 133 TKMGFYDDIYVQNSLVHFYGVCGESRNACKVFGEMPVRDVVSWTGIITGFTRTGLYKEAL 192

Query: 325 RLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVD 384
             F++M+   V  +  T + VL +    G + +G+ I G ++  K   + +++    ++D
Sbjct: 193 DTFSKMD---VEPNLATYVCVLVSSGRVGCLSLGKGIHGLIL--KRASLISLETGNALID 247

Query: 385 LLARSGSLREAFEVMRCMPFDPTKAMWGSLL 415
           +  +   L +A  V   +     K  W S++
Sbjct: 248 MYVKCEQLSDAMRVFGELE-KKDKVSWNSMI 277


>AT4G21300.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:11336479-11339052 FORWARD
           LENGTH=857
          Length = 857

 Score =  248 bits (634), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 130/393 (33%), Positives = 226/393 (57%), Gaps = 6/393 (1%)

Query: 98  VFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQS 157
           V +F ++I  + H+  + +SL    +F  + +  I PN  T   +   +         + 
Sbjct: 406 VVVFTAMISGYLHNGLYIDSL---EMFRWLVKVKISPNEITLVSILPVIGILLALKLGRE 462

Query: 158 VHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAG 217
           +H  ++K G  +   +  +++ +YA   R+ +L  ++F+ ++ RD+VSW  MI     + 
Sbjct: 463 LHGFIIKKGFDNRCNIGCAVIDMYAKCGRM-NLAYEIFERLSKRDIVSWNSMITRCAQSD 521

Query: 218 KFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGT 277
               A+  F QM  +G+  + V++  AL+ACA+  +   G  IH F+ ++    DV   +
Sbjct: 522 NPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSES 581

Query: 278 ALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRM-EQDGVR 336
            LIDMYAKCG ++  + VF ++KEKN+ +WN++I         ++++ LF+ M E+ G+R
Sbjct: 582 TLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIR 641

Query: 337 ADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAF 396
            D++T L ++S+C H G VD G + F  + E  YG  P  +HYAC+VDL  R+G L EA+
Sbjct: 642 PDQITFLEIISSCCHVGDVDEGVRFFRSMTE-DYGIQPQQEHYACVVDLFGRAGRLTEAY 700

Query: 397 EVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMG 456
           E ++ MPF P   +WG+LL + +   ++E +E  + KL++L+P+NS YYV +SN +A   
Sbjct: 701 ETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAR 760

Query: 457 RWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
            W+ V KVR +MK+R++ K  G S +E+ ++ H
Sbjct: 761 EWESVTKVRSLMKEREVQKIPGYSWIEINKRTH 793



 Score =  156 bits (394), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 111/439 (25%), Positives = 213/439 (48%), Gaps = 22/439 (5%)

Query: 3   SKCCSIDEPSTTLPFCSVLTFDYTLRMSGFSDRAVTL--LKDFCHSRLHVQ---QIQAQL 57
           +KC ++D         SV+     +RM   S  AVT   +   C S+L +    Q+   +
Sbjct: 215 AKCGALD---------SVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLV 265

Query: 58  ILHNLQSNPTIAHHFITVCQSHXXXXXXXXXXXXXVPRPHVFIFNSLIRAFSHSHHHHNS 117
           ++  +    +I +  +++  S              + R     +N +I  +  S     S
Sbjct: 266 VVSGVDFEGSIKNSLLSM-YSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEES 324

Query: 118 LTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSL 177
           LT    F  M  + +LP+  TF  L  S+S   +    + +H ++++     DI++ ++L
Sbjct: 325 LT---FFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSAL 381

Query: 178 LGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPN 237
           +  Y    R  S+ + +F +    DVV +T MI G+ + G + D+L  F  +    ++PN
Sbjct: 382 IDAYFKC-RGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPN 440

Query: 238 RVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFS 297
            +T+V+ L       A+++G  +H FI + G++    +G A+IDMYAKCGR+     +F 
Sbjct: 441 EITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFE 500

Query: 298 SVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDM 357
            + ++++ +WN++I   A + +   AI +F +M   G+  D V++ A LSAC +      
Sbjct: 501 RLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESF 560

Query: 358 GRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVS 417
           G+ I GF++  K+    +V   + ++D+ A+ G+L+ A  V + M  +     W S++ +
Sbjct: 561 GKAIHGFMI--KHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMK-EKNIVSWNSIIAA 617

Query: 418 SKSQGDLEFSEFVARKLVE 436
             + G L+ S  +  ++VE
Sbjct: 618 CGNHGKLKDSLCLFHEMVE 636



 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 133/272 (48%), Gaps = 4/272 (1%)

Query: 95  RPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQ 154
           R  +  +NS+I +F  +   + +L   + +  M    + P+  TFP L K+  A  +F  
Sbjct: 100 RSSIRPWNSIISSFVRNGLLNQAL---AFYFKMLCFGVSPDVSTFPCLVKACVALKNFKG 156

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFR 214
              +   V  LG   + +V +SL+  Y    ++  +  +LFD +  +D V W VM+ G+ 
Sbjct: 157 IDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKI-DVPSKLFDRVLQKDCVIWNVMLNGYA 215

Query: 215 NAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVV 274
             G  D  +  F  M+   ++PN VT    L+ CA    +++G  +H  +  +G + +  
Sbjct: 216 KCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGS 275

Query: 275 LGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDG 334
           +  +L+ MY+KCGR ++  ++F  +   +  TWN +I G   +   EE++  F  M   G
Sbjct: 276 IKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSG 335

Query: 335 VRADEVTLLAVLSACNHSGLVDMGRQIFGFLV 366
           V  D +T  ++L + +    ++  +QI  +++
Sbjct: 336 VLPDAITFSSLLPSVSKFENLEYCKQIHCYIM 367



 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 132/289 (45%), Gaps = 6/289 (2%)

Query: 141 FLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTH 200
            L ++ S P    Q + VHA ++      D Y    +LG+YA     FS C ++F  +  
Sbjct: 40  LLLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGS-FSDCGKMFYRLDL 98

Query: 201 R--DVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGA 258
           R   +  W  +I  F   G  + AL  + +M   GV+P+  T    + AC      +   
Sbjct: 99  RRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGID 158

Query: 259 WIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAK 318
           ++ D +   G + +  + ++LI  Y + G+++   ++F  V +K+   WN ++ G A   
Sbjct: 159 FLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCG 218

Query: 319 SGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKH 378
           + +  I+ F+ M  D +  + VT   VLS C    L+D+G Q+ G +V     F  ++K+
Sbjct: 219 ALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKN 278

Query: 379 YACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFS 427
              ++ + ++ G   +A ++ R M    T   W  ++      G +E S
Sbjct: 279 --SLLSMYSKCGRFDDASKLFRMMSRADT-VTWNCMISGYVQSGLMEES 324


>AT4G33170.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:15995701-15998673 REVERSE
           LENGTH=990
          Length = 990

 Score =  248 bits (633), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 134/389 (34%), Positives = 223/389 (57%), Gaps = 5/389 (1%)

Query: 101 FNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHA 160
           +N+++  ++ SH  H +L    +FA MH+     + +T   +FK+        Q + VHA
Sbjct: 485 WNAMMAGYTQSHDGHKTL---KLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHA 541

Query: 161 HVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFD 220
           + +K G+  D++V + +L +Y     + S  +  FD +   D V+WT MI G    G+ +
Sbjct: 542 YAIKSGYDLDLWVSSGILDMYVKCGDM-SAAQFAFDSIPVPDDVAWTTMISGCIENGEEE 600

Query: 221 DALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALI 280
            A   F QM+  GV P+  T+     A +   A+E G  IH    +     D  +GT+L+
Sbjct: 601 RAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLV 660

Query: 281 DMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEV 340
           DMYAKCG +++   +F  ++  N+  WNA++ GLA    G+E ++LF +M+  G++ D+V
Sbjct: 661 DMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKV 720

Query: 341 TLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMR 400
           T + VLSAC+HSGLV    +    +  G YG  P ++HY+C+ D L R+G +++A  ++ 
Sbjct: 721 TFIGVLSACSHSGLVSEAYKHMRSM-HGDYGIKPEIEHYSCLADALGRAGLVKQAENLIE 779

Query: 401 CMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDD 460
            M  + + +M+ +LL + + QGD E  + VA KL+ELEP +S+ YV LSN+YA   +WD+
Sbjct: 780 SMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDE 839

Query: 461 VEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
           ++  R MMK  ++ KD G S +EV+ + H
Sbjct: 840 MKLARTMMKGHKVKKDPGFSWIEVKNKIH 868



 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 149/337 (44%), Gaps = 8/337 (2%)

Query: 106 RAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKL 165
           +  S   H       L  FA M  + +  +  TF  +  +       A  Q VH   LKL
Sbjct: 285 KGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKL 344

Query: 166 GHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLA 225
           G    + V NSL+ +Y    R F   R +FD M+ RD++SW  +I G    G   +A+  
Sbjct: 345 GLDLMLTVSNSLINMYC-KLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCL 403

Query: 226 FEQMQYAGVAPNRVTMVNAL-AACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYA 284
           F Q+   G+ P++ TM + L AA +    + +   +H    +     D  + TALID Y+
Sbjct: 404 FMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYS 463

Query: 285 KCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLA 344
           +  R  +   +       ++  WNA++ G   +  G + ++LF  M + G R+D+ TL  
Sbjct: 464 R-NRCMKEAEILFERHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLAT 522

Query: 345 VLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPF 404
           V   C     ++ G+Q+  + +  K G+  ++   + ++D+  + G +  A      +P 
Sbjct: 523 VFKTCGFLFAINQGKQVHAYAI--KSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPV 580

Query: 405 DPTKAMWGSLLVSSKSQGDLE--FSEFVARKLVELEP 439
            P    W +++      G+ E  F  F   +L+ + P
Sbjct: 581 -PDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLP 616



 Score =  109 bits (272), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 140/302 (46%), Gaps = 6/302 (1%)

Query: 123 IFAHMHRNTILPNHYTFPFLFKSLSA-PCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVY 181
           +F  + R  + P+ YT   + K+ S+ P   + ++ VH H +K+ ++ D +V  +L+  Y
Sbjct: 403 LFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAY 462

Query: 182 AASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTM 241
           + + R       LF E  + D+V+W  M+ G+  +      L  F  M   G   +  T+
Sbjct: 463 SRN-RCMKEAEILF-ERHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTL 520

Query: 242 VNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKE 301
                 C    A+  G  +H +  ++G++LD+ + + ++DMY KCG +      F S+  
Sbjct: 521 ATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPV 580

Query: 302 KNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQI 361
            +   W  +I G       E A  +F++M   GV  DE T+  +  A +    ++ GRQI
Sbjct: 581 PDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQI 640

Query: 362 FGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQ 421
               ++      P V     +VD+ A+ GS+ +A+ + + +      A W ++LV     
Sbjct: 641 HANALKLNCTNDPFVG--TSLVDMYAKCGSIDDAYCLFKRIEMMNITA-WNAMLVGLAQH 697

Query: 422 GD 423
           G+
Sbjct: 698 GE 699



 Score = 82.8 bits (203), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 102/209 (48%), Gaps = 7/209 (3%)

Query: 139 FPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEM 198
           F FL  ++++       +  HA +L      + ++ N+L+ +Y+    L +  R++FD+M
Sbjct: 43  FGFLRNAITSS-DLMLGKCTHARILTFEENPERFLINNLISMYSKCGSL-TYARRVFDKM 100

Query: 199 THRDVVSWTVMIMGFRNAGK-----FDDALLAFEQMQYAGVAPNRVTMVNALAACADSGA 253
             RD+VSW  ++  +  + +        A L F  ++   V  +R+T+   L  C  SG 
Sbjct: 101 PDRDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGY 160

Query: 254 VEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKG 313
           V      H +  + G + D  +  AL+++Y K G+V+EG  +F  +  ++V  WN ++K 
Sbjct: 161 VWASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKA 220

Query: 314 LALAKSGEEAIRLFNRMEQDGVRADEVTL 342
                  EEAI L +     G+  +E+TL
Sbjct: 221 YLEMGFKEEAIDLSSAFHSSGLNPNEITL 249



 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 8/142 (5%)

Query: 279 LIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLA-----LAKSGEEAIRLFNRMEQD 333
           LI MY+KCG +    RVF  + ++++ +WN+++   A     + ++ ++A  LF  + QD
Sbjct: 80  LISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQD 139

Query: 334 GVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLR 393
            V    +TL  +L  C HSG V       G+    K G   +      +V++  + G ++
Sbjct: 140 VVYTSRMTLSPMLKLCLHSGYVWASESFHGYAC--KIGLDGDEFVAGALVNIYLKFGKVK 197

Query: 394 EAFEVMRCMPFDPTKAMWGSLL 415
           E   +   MP+     +W  +L
Sbjct: 198 EGKVLFEEMPYRDV-VLWNLML 218



 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 71/151 (47%), Gaps = 3/151 (1%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHH--HNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPC 150
           +P   +  +NS++ A++ S      N      +F  + ++ +  +  T   + K      
Sbjct: 100 MPDRDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSG 159

Query: 151 HFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMI 210
           +   ++S H +  K+G   D +V  +L+ +Y    ++    + LF+EM +RDVV W +M+
Sbjct: 160 YVWASESFHGYACKIGLDGDEFVAGALVNIYLKFGKV-KEGKVLFEEMPYRDVVLWNLML 218

Query: 211 MGFRNAGKFDDALLAFEQMQYAGVAPNRVTM 241
             +   G  ++A+        +G+ PN +T+
Sbjct: 219 KAYLEMGFKEEAIDLSSAFHSSGLNPNEITL 249


>AT2G36730.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:15405068-15406573 REVERSE
           LENGTH=501
          Length = 501

 Score =  248 bits (632), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 154/447 (34%), Positives = 237/447 (53%), Gaps = 12/447 (2%)

Query: 43  FCHSRLHVQQIQAQLILHNLQSNPTIAHHFITVCQ-SHXXXXXXXXXXXXXVPRPHVFIF 101
            C S  H+ QI  Q+ L +LQ++  I    + V   S                      +
Sbjct: 22  LCSSIKHLLQIHGQIHLSSLQNDSFIISELVRVSSLSLAKDLAFARTLLLHSSDSTPSTW 81

Query: 102 NSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAH 161
           N L R +S S    + +  + +++ M R  I PN  TFPFL K+ ++       + +   
Sbjct: 82  NMLSRGYSSSD---SPVESIWVYSEMKRRGIKPNKLTFPFLLKACASFLGLTAGRQIQVE 138

Query: 162 VLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDD 221
           VLK G   D+YV N+L+ +Y    +  S  R++FDEMT R+VVSW  ++      GK + 
Sbjct: 139 VLKHGFDFDVYVGNNLIHLYGTCKKT-SDARKVFDEMTERNVVSWNSIMTALVENGKLNL 197

Query: 222 ALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALID 281
               F +M      P+  TMV  L+AC   G + +G  +H  +     EL+  LGTAL+D
Sbjct: 198 VFECFCEMIGKRFCPDETTMVVLLSACG--GNLSLGKLVHSQVMVRELELNCRLGTALVD 255

Query: 282 MYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNR-MEQDGVRADEV 340
           MYAK G +E    VF  + +KNV+TW+A+I GLA     EEA++LF++ M++  VR + V
Sbjct: 256 MYAKSGGLEYARLVFERMVDKNVWTWSAMIVGLAQYGFAEEALQLFSKMMKESSVRPNYV 315

Query: 341 TLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMR 400
           T L VL AC+H+GLVD G + F  + E  +   P + HY  MVD+L R+G L EA++ ++
Sbjct: 316 TFLGVLCACSHTGLVDDGYKYFHEM-EKIHKIKPMMIHYGAMVDILGRAGRLNEAYDFIK 374

Query: 401 CMPFDPTKAMWGSLLVSSK---SQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGR 457
            MPF+P   +W +LL +      + D    E V ++L+ELEP  S   V ++N +AE   
Sbjct: 375 KMPFEPDAVVWRTLLSACSIHHDEDDEGIGEKVKKRLIELEPKRSGNLVIVANRFAEARM 434

Query: 458 WDDVEKVRGMMKDRQLTKDLGCSSVEV 484
           W +  +VR +MK+ ++ K  G S +E+
Sbjct: 435 WAEAAEVRRVMKETKMKKIAGESCLEL 461


>AT2G44880.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr2:18505239-18506906 FORWARD
           LENGTH=555
          Length = 555

 Score =  247 bits (631), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 130/353 (36%), Positives = 204/353 (57%), Gaps = 36/353 (10%)

Query: 164 KLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFD--- 220
           ++ H+ D+ ++N+++  +  S  + S  R+LFDEMTH+ V++WT MI G+ N    D   
Sbjct: 169 QMPHVKDVVIYNAMMDGFVKSGDMTS-ARRLFDEMTHKTVITWTTMIHGYCNIKDIDAAR 227

Query: 221 ----------------------------DALLAFEQMQ-YAGVAPNRVTMVNALAACADS 251
                                       + +  F++MQ    + P+ VT+++ L A +D+
Sbjct: 228 KLFDAMPERNLVSWNTMIGGYCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPAISDT 287

Query: 252 GAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVI 311
           GA+ +G W H F++R   +  V + TA++DMY+KCG +E+  R+F  + EK V +WNA+I
Sbjct: 288 GALSLGEWCHCFVQRKKLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMI 347

Query: 312 KGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYG 371
            G AL  +   A+ LF  M  +  + DE+T+LAV++ACNH GLV+ GR+ F  + E   G
Sbjct: 348 HGYALNGNARAALDLFVTMMIEE-KPDEITMLAVITACNHGGLVEEGRKWFHVMRE--MG 404

Query: 372 FIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVA 431
               ++HY CMVDLL R+GSL+EA +++  MPF+P   +  S L +     D+E +E + 
Sbjct: 405 LNAKIEHYGCMVDLLGRAGSLKEAEDLITNMPFEPNGIILSSFLSACGQYKDIERAERIL 464

Query: 432 RKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEV 484
           +K VELEP N   YV L NLYA   RWDD   V+ +M+  Q  K++GCS +E+
Sbjct: 465 KKAVELEPQNDGNYVLLRNLYAADKRWDDFGMVKNVMRKNQAKKEVGCSLIEI 517



 Score =  128 bits (322), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 168/362 (46%), Gaps = 18/362 (4%)

Query: 57  LILHNLQSNPTIAHHFITVCQSHXXXXXXXXXXXXXVPRPHVFIFNSLIRAFSHSHHHHN 116
           ++ H +++N  I   F+ +  S                R   F+ NS+I+A+  +  + +
Sbjct: 1   MLRHAIETNVQIFTKFLVISASAVGIGYARKLFDQRPQRDDSFLSNSMIKAYLETRQYPD 60

Query: 117 SLTPLSIFAHMHRNTIL-PNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHN 175
           S    +++  + + T   P+++TF  L KS S      Q   +H+ + + G   D+YV  
Sbjct: 61  SF---ALYRDLRKETCFAPDNFTFTTLTKSCSLSMCVYQGLQLHSQIWRFGFCADMYVST 117

Query: 176 SLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVA 235
            ++ +YA   ++    R  FDEM HR  VSWT +I G+   G+ D A   F+QM +    
Sbjct: 118 GVVDMYAKFGKM-GCARNAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQMPHV--- 173

Query: 236 PNRVTMVNALA-ACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVR 294
              V + NA+      SG +     + D +        V+  T +I  Y     ++   +
Sbjct: 174 -KDVVIYNAMMDGFVKSGDMTSARRLFDEMTHK----TVITWTTMIHGYCNIKDIDAARK 228

Query: 295 VFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRME-QDGVRADEVTLLAVLSACNHSG 353
           +F ++ E+N+ +WN +I G    K  +E IRLF  M+    +  D+VT+L+VL A + +G
Sbjct: 229 LFDAMPERNLVSWNTMIGGYCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPAISDTG 288

Query: 354 LVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGS 413
            + +G     F+   K      VK    ++D+ ++ G + +A  +   MP +   A W +
Sbjct: 289 ALSLGEWCHCFVQRKKLD--KKVKVCTAILDMYSKCGEIEKAKRIFDEMP-EKQVASWNA 345

Query: 414 LL 415
           ++
Sbjct: 346 MI 347


>AT2G01510.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:230752-232506 REVERSE
           LENGTH=584
          Length = 584

 Score =  247 bits (630), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 138/396 (34%), Positives = 220/396 (55%), Gaps = 5/396 (1%)

Query: 95  RPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQ 154
           +P +F++N+L + +  +     SL    ++  M    + P+ +T+PF+ K++S    F+ 
Sbjct: 71  KPRIFLWNTLFKGYVRNQLPFESLL---LYKKMRDLGVRPDEFTYPFVVKAISQLGDFSC 127

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFR 214
             ++HAHV+K G      V   L+ +Y     L S    LF+ M  +D+V+W   +    
Sbjct: 128 GFALHAHVVKYGFGCLGIVATELVMMYMKFGELSS-AEFLFESMQVKDLVAWNAFLAVCV 186

Query: 215 NAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVV 274
             G    AL  F +M    V  +  T+V+ L+AC   G++E+G  I+D  R+   + +++
Sbjct: 187 QTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNII 246

Query: 275 LGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDG 334
           +  A +DM+ KCG  E    +F  +K++NV +W+ +I G A+     EA+ LF  M+ +G
Sbjct: 247 VENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEG 306

Query: 335 VRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGK-YGFIPNVKHYACMVDLLARSGSLR 393
           +R + VT L VLSAC+H+GLV+ G++ F  +V+       P  +HYACMVDLL RSG L 
Sbjct: 307 LRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLE 366

Query: 394 EAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYA 453
           EA+E ++ MP +P   +WG+LL +     D+   + VA  LVE  P   +Y+V LSN+YA
Sbjct: 367 EAYEFIKKMPVEPDTGIWGALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLSNIYA 426

Query: 454 EMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
             G+WD V+KVR  M+     K    SSVE E + H
Sbjct: 427 AAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFEGKIH 462



 Score = 89.4 bits (220), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 115/240 (47%), Gaps = 12/240 (5%)

Query: 127 MHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPR 186
           + + T L        L  S S P    Q + +HA VL+ G        NSLL     +  
Sbjct: 2   LAKQTPLTKQMLSELLRASSSKP---KQLKKIHAIVLRTGFSE----KNSLLTQLLENLV 54

Query: 187 LFS-LC--RQLFDEMTHRDVVSWTVMIMGF-RNAGKFDDALLAFEQMQYAGVAPNRVTMV 242
           +   +C  RQ+FDEM    +  W  +  G+ RN   F ++LL +++M+  GV P+  T  
Sbjct: 55  VIGDMCYARQVFDEMHKPRIFLWNTLFKGYVRNQLPF-ESLLLYKKMRDLGVRPDEFTYP 113

Query: 243 NALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEK 302
             + A +  G    G  +H  + + G+    ++ T L+ MY K G +     +F S++ K
Sbjct: 114 FVVKAISQLGDFSCGFALHAHVVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVK 173

Query: 303 NVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIF 362
           ++  WNA +       +   A+  FN+M  D V+ D  T++++LSAC   G +++G +I+
Sbjct: 174 DLVAWNAFLAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIY 233


>AT4G33990.1 | Symbols: EMB2758 | Tetratricopeptide repeat
           (TPR)-like superfamily protein | chr4:16290141-16292612
           REVERSE LENGTH=823
          Length = 823

 Score =  246 bits (629), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 133/389 (34%), Positives = 220/389 (56%), Gaps = 7/389 (1%)

Query: 101 FNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHA 160
           +NS+I+A+  +      L  +S+F  M  + I P+  T   L   LS        +SV  
Sbjct: 316 WNSIIKAYELNEQ---PLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQG 372

Query: 161 HVLKLG-HLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKF 219
             L+ G  L DI + N+++ +YA    L    R +F+ + + DV+SW  +I G+   G  
Sbjct: 373 FTLRKGWFLEDITIGNAVVVMYAKLG-LVDSARAVFNWLPNTDVISWNTIISGYAQNGFA 431

Query: 220 DDALLAFEQMQYAG-VAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTA 278
            +A+  +  M+  G +A N+ T V+ L AC+ +GA+  G  +H  + +NG  LDV + T+
Sbjct: 432 SEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTS 491

Query: 279 LIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRAD 338
           L DMY KCGR+E+ + +F  +   N   WN +I        GE+A+ LF  M  +GV+ D
Sbjct: 492 LADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPD 551

Query: 339 EVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEV 398
            +T + +LSAC+HSGLVD G+  F  +++  YG  P++KHY CMVD+  R+G L  A + 
Sbjct: 552 HITFVTLLSACSHSGLVDEGQWCFE-MMQTDYGITPSLKHYGCMVDMYGRAGQLETALKF 610

Query: 399 MRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRW 458
           ++ M   P  ++WG+LL + +  G+++  +  +  L E+EP +  Y+V LSN+YA  G+W
Sbjct: 611 IKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKW 670

Query: 459 DDVEKVRGMMKDRQLTKDLGCSSVEVEEQ 487
           + V+++R +   + L K  G SS+EV+ +
Sbjct: 671 EGVDEIRSIAHGKGLRKTPGWSSMEVDNK 699



 Score =  129 bits (324), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 162/325 (49%), Gaps = 12/325 (3%)

Query: 98  VFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQS 157
           V+ +N +I  +  + +    +   S+F  M  + + P++ TFP + K+            
Sbjct: 117 VYAWNLMISGYGRAGNSSEVIRCFSLF--MLSSGLTPDYRTFPSVLKACRT---VIDGNK 171

Query: 158 VHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAG 217
           +H   LK G + D+YV  SL+ +Y+    + +  R LFDEM  RD+ SW  MI G+  +G
Sbjct: 172 IHCLALKFGFMWDVYVAASLIHLYSRYKAVGN-ARILFDEMPVRDMGSWNAMISGYCQSG 230

Query: 218 KFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGT 277
              +AL     ++    A + VT+V+ L+AC ++G    G  IH +  ++G E ++ +  
Sbjct: 231 NAKEALTLSNGLR----AMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSN 286

Query: 278 ALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRA 337
            LID+YA+ GR+ +  +VF  +  +++ +WN++IK   L +    AI LF  M    ++ 
Sbjct: 287 KLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQP 346

Query: 338 DEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFE 397
           D +TL+++ S  +  G +   R + GF +   + F+ ++     +V + A+ G +  A  
Sbjct: 347 DCLTLISLASILSQLGDIRACRSVQGFTLRKGW-FLEDITIGNAVVVMYAKLGLVDSARA 405

Query: 398 VMRCMPFDPTKAMWGSLLVSSKSQG 422
           V   +P +     W +++      G
Sbjct: 406 VFNWLP-NTDVISWNTIISGYAQNG 429



 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 155/320 (48%), Gaps = 17/320 (5%)

Query: 151 HFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMI 210
           +   A+ +HA ++    + ++ +   L+ +Y     + +L R  FD + +RDV +W +MI
Sbjct: 66  NLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNV-ALARHTFDHIQNRDVYAWNLMI 124

Query: 211 MGFRNAGKFDDALLAFEQ-MQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGW 269
            G+  AG   + +  F   M  +G+ P+  T  + L AC     V  G  IH    + G+
Sbjct: 125 SGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACR---TVIDGNKIHCLALKFGF 181

Query: 270 ELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNR 329
             DV +  +LI +Y++   V     +F  +  +++ +WNA+I G   + + +EA+ L N 
Sbjct: 182 MWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSN- 240

Query: 330 MEQDGVRA-DEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLAR 388
               G+RA D VT++++LSAC  +G  + G  I  + +  K+G    +     ++DL A 
Sbjct: 241 ----GLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSI--KHGLESELFVSNKLIDLYAE 294

Query: 389 SGSLREAFEVMRCMPFDPTKAMWGSLLVSSK--SQGDLEFSEFVARKLVELEPANSAYYV 446
            G LR+  +V   M +      W S++ + +   Q     S F   +L  ++P +    +
Sbjct: 295 FGRLRDCQKVFDRM-YVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQP-DCLTLI 352

Query: 447 HLSNLYAEMGRWDDVEKVRG 466
            L+++ +++G       V+G
Sbjct: 353 SLASILSQLGDIRACRSVQG 372


>AT3G23330.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:8347200-8349347 FORWARD
           LENGTH=715
          Length = 715

 Score =  246 bits (628), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 124/397 (31%), Positives = 220/397 (55%), Gaps = 5/397 (1%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +PR  V  +N++I  ++ S  + ++L    +   M    + P+ +T   +    S     
Sbjct: 202 MPRKDVVSYNTIIAGYAQSGMYEDAL---RMVREMGTTDLKPDSFTLSSVLPIFSEYVDV 258

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMG 212
            + + +H +V++ G   D+Y+ +SL+ +YA S R+     ++F  +  RD +SW  ++ G
Sbjct: 259 IKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIED-SERVFSRLYCRDGISWNSLVAG 317

Query: 213 FRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELD 272
           +   G++++AL  F QM  A V P  V   + + ACA    + +G  +H ++ R G+  +
Sbjct: 318 YVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSN 377

Query: 273 VVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQ 332
           + + +AL+DMY+KCG ++   ++F  +   +  +W A+I G AL   G EA+ LF  M++
Sbjct: 378 IFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKR 437

Query: 333 DGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSL 392
            GV+ ++V  +AVL+AC+H GLVD     F  + +  YG    ++HYA + DLL R+G L
Sbjct: 438 QGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTK-VYGLNQELEHYAAVADLLGRAGKL 496

Query: 393 REAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLY 452
            EA+  +  M  +PT ++W +LL S     +LE +E VA K+  ++  N   YV + N+Y
Sbjct: 497 EEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMY 556

Query: 453 AEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
           A  GRW ++ K+R  M+ + L K   CS +E++ + H
Sbjct: 557 ASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTH 593



 Score =  151 bits (382), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 101/398 (25%), Positives = 183/398 (45%), Gaps = 44/398 (11%)

Query: 38  TLLKD--FCHSRLHVQQIQAQLILHNLQSNPTIAHHFITVCQSHXXXXXXXXXXXXXVPR 95
           TL+K+     S+   +Q+ AQ I    QS    +   +    ++             +  
Sbjct: 10  TLIKNPTRIKSKSQAKQLHAQFI--RTQSLSHTSASIVISIYTNLKLLHEALLLFKTLKS 67

Query: 96  PHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQA 155
           P V  + S+IR F+       +L     F  M  +   P+H  FP + KS +        
Sbjct: 68  PPVLAWKSVIRCFTDQSLFSKALAS---FVEMRASGRCPDHNVFPSVLKSCTMMMDLRFG 124

Query: 156 QSVHAHVLKLGHLHDIYVHNSLLGVYAA-------------------------------- 183
           +SVH  +++LG   D+Y  N+L+ +YA                                 
Sbjct: 125 ESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAE 184

Query: 184 ---SPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVT 240
               P      R++F+ M  +DVVS+  +I G+  +G ++DAL    +M    + P+  T
Sbjct: 185 TCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFT 244

Query: 241 MVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVK 300
           + + L   ++   V  G  IH ++ R G + DV +G++L+DMYAK  R+E+  RVFS + 
Sbjct: 245 LSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLY 304

Query: 301 EKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQ 360
            ++  +WN+++ G        EA+RLF +M    V+   V   +V+ AC H   + +G+Q
Sbjct: 305 CRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQ 364

Query: 361 IFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEV 398
           + G+++ G  GF  N+   + +VD+ ++ G+++ A ++
Sbjct: 365 LHGYVLRG--GFGSNIFIASALVDMYSKCGNIKAARKI 400


>AT3G49142.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:18215788-18217848 REVERSE
           LENGTH=686
          Length = 686

 Score =  245 bits (625), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 141/508 (27%), Positives = 245/508 (48%), Gaps = 72/508 (14%)

Query: 50  VQQIQAQLILHNLQSNPTIAHHFITVCQSHXXXXXXXXXXXXXVPRPHVFIFNSLIRAFS 109
           ++ + +++IL +L+ N ++    +    S              +P  +V I N +IR++ 
Sbjct: 58  LRTVHSRIILEDLRCNSSLGVKLMRAYAS-LKDVASARKVFDEIPERNVIIINVMIRSYV 116

Query: 110 HSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLG--- 166
           ++  +   +    +F  M    + P+HYTFP + K+ S        + +H    K+G   
Sbjct: 117 NNGFYGEGV---KVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSS 173

Query: 167 ----------------------------HLHDIYVHNSLLGVYAASPRL---FSLCRQL- 194
                                          D+   NSL+  YA + R      +CR++ 
Sbjct: 174 TLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREME 233

Query: 195 --------------------------------FDEMTHRDVVSWTVMIMGFRNAGKFDDA 222
                                           F +M  + +VSW VMI  +       +A
Sbjct: 234 SVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEA 293

Query: 223 LLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDM 282
           +  + +M+  G  P+ V++ + L AC D+ A+ +G  IH +I R     +++L  ALIDM
Sbjct: 294 VELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDM 353

Query: 283 YAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTL 342
           YAKCG +E+   VF ++K ++V +W A+I     +  G +A+ LF++++  G+  D +  
Sbjct: 354 YAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAF 413

Query: 343 LAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCM 402
           +  L+AC+H+GL++ GR  F  + +  Y   P ++H ACMVDLL R+G ++EA+  ++ M
Sbjct: 414 VTTLAACSHAGLLEEGRSCFKLMTD-HYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDM 472

Query: 403 PFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVE 462
             +P + +WG+LL + +   D +     A KL +L P  S YYV LSN+YA+ GRW++V 
Sbjct: 473 SMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVT 532

Query: 463 KVRGMMKDRQLTKDLGCSSVEVEEQGHT 490
            +R +MK + L K+ G S+VEV    HT
Sbjct: 533 NIRNIMKSKGLKKNPGASNVEVNRIIHT 560


>AT4G14820.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:8507794-8510038 REVERSE
           LENGTH=722
          Length = 722

 Score =  244 bits (624), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 114/322 (35%), Positives = 197/322 (61%), Gaps = 2/322 (0%)

Query: 168 LHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFE 227
           + +++V  +++  Y+   RL    + +FD+   +D+V WT MI  +  +    +AL  FE
Sbjct: 275 VRNLFVSTAMVSGYSKCGRLDD-AQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFE 333

Query: 228 QMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCG 287
           +M  +G+ P+ V+M + ++ACA+ G ++   W+H  I  NG E ++ +  ALI+MYAKCG
Sbjct: 334 EMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCG 393

Query: 288 RVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLS 347
            ++    VF  +  +NV +W+++I  L++     +A+ LF RM+Q+ V  +EVT + VL 
Sbjct: 394 GLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLY 453

Query: 348 ACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPT 407
            C+HSGLV+ G++IF  + + +Y   P ++HY CMVDL  R+  LREA EV+  MP    
Sbjct: 454 GCSHSGLVEEGKKIFASMTD-EYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASN 512

Query: 408 KAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGM 467
             +WGSL+ + +  G+LE  +F A++++ELEP +    V +SN+YA   RW+DV  +R +
Sbjct: 513 VVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRV 572

Query: 468 MKDRQLTKDLGCSSVEVEEQGH 489
           M+++ + K+ G S ++   + H
Sbjct: 573 MEEKNVFKEKGLSRIDQNGKSH 594



 Score =  140 bits (354), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 112/474 (23%), Positives = 207/474 (43%), Gaps = 45/474 (9%)

Query: 33  SDRAVTLLK--DFCHSRLHVQQIQAQLILHNLQSNPTIAHHFITVCQSHXXXXXXXXXXX 90
           S  A T+L+   FC S  H++Q+ A  IL  + ++   +  F     S            
Sbjct: 9   STAANTILEKLSFCKSLNHIKQLHAH-ILRTVINHKLNSFLFNLSVSSSSINLSYALNVF 67

Query: 91  XXVPRP-HVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAP 149
             +P P    +FN  +R  S S     ++       H+       + ++F  + K++S  
Sbjct: 68  SSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRL---DQFSFLPILKAVSKV 124

Query: 150 CHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVM 209
               +   +H    K+  L D +V    + +YA+  R+ +  R +FDEM+HRDVV+W  M
Sbjct: 125 SALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRI-NYARNVFDEMSHRDVVTWNTM 183

Query: 210 IMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGW 269
           I  +   G  D+A   FE+M+ + V P+ + + N ++AC  +G +     I++F+  N  
Sbjct: 184 IERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDV 243

Query: 270 ELDVVLGTALIDMYA-------------------------------KCGRVEEGVRVFSS 298
            +D  L TAL+ MYA                               KCGR+++   +F  
Sbjct: 244 RMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQ 303

Query: 299 VKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMG 358
            ++K++  W  +I     +   +EA+R+F  M   G++ D V++ +V+SAC + G++D  
Sbjct: 304 TEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKA 363

Query: 359 RQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSS 418
           + +   +     G    +     ++++ A+ G L    +V   MP     + W S++ + 
Sbjct: 364 KWVHSCIHVN--GLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVS-WSSMINAL 420

Query: 419 KSQGDLE--FSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKD 470
              G+     S F   K   +EP N   +V +    +  G  ++ +K+   M D
Sbjct: 421 SMHGEASDALSLFARMKQENVEP-NEVTFVGVLYGCSHSGLVEEGKKIFASMTD 473


>AT1G20230.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:7009570-7011852 FORWARD
           LENGTH=760
          Length = 760

 Score =  244 bits (624), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 136/428 (31%), Positives = 227/428 (53%), Gaps = 38/428 (8%)

Query: 97  HVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQ 156
           ++  +N ++  F+ S +H  ++    +F  +H     P+  T   +  S+         +
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVV---MFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGR 272

Query: 157 SVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCR------------------------ 192
            +H +V+K G L D  V ++++ +Y  S  ++ +                          
Sbjct: 273 LIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNG 332

Query: 193 ---------QLFDEMTHR-DVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMV 242
                    +LF E T   +VVSWT +I G    GK  +AL  F +MQ AGV PN VT+ 
Sbjct: 333 LVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIP 392

Query: 243 NALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEK 302
           + L AC +  A+  G   H F  R     +V +G+ALIDMYAKCGR+     VF+ +  K
Sbjct: 393 SMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTK 452

Query: 303 NVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIF 362
           N+  WN+++ G ++    +E + +F  + +  ++ D ++  ++LSAC   GL D G + F
Sbjct: 453 NLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYF 512

Query: 363 GFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQG 422
             + E +YG  P ++HY+CMV+LL R+G L+EA+++++ MPF+P   +WG+LL S + Q 
Sbjct: 513 KMMSE-EYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQN 571

Query: 423 DLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSV 482
           +++ +E  A KL  LEP N   YV LSN+YA  G W +V+ +R  M+   L K+ GCS +
Sbjct: 572 NVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWI 631

Query: 483 EVEEQGHT 490
           +V+ + +T
Sbjct: 632 QVKNRVYT 639



 Score =  127 bits (320), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/395 (24%), Positives = 172/395 (43%), Gaps = 81/395 (20%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P P ++ F+SLI A + +     S+    +F+ M  + ++P+ +  P LFK  +    F
Sbjct: 76  IPDPTIYSFSSLIYALTKAKLFTQSI---GVFSRMFSHGLIPDSHVLPNLFKVCAELSAF 132

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVV-------- 204
              + +H      G   D +V  S+  +Y    R+    R++FD M+ +DVV        
Sbjct: 133 KVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGD-ARKVFDRMSDKDVVTCSALLCA 191

Query: 205 ---------------------------SWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPN 237
                                      SW  ++ GF  +G   +A++ F+++ + G  P+
Sbjct: 192 YARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPD 251

Query: 238 RVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGR--------- 288
           +VT+ + L +  DS  + MG  IH ++ + G   D  + +A+IDMY K G          
Sbjct: 252 QVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFN 311

Query: 289 ----------------------VEEGVRVFSSVKEK----NVFTWNAVIKGLALAKSGEE 322
                                 V++ + +F   KE+    NV +W ++I G A      E
Sbjct: 312 QFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIE 371

Query: 323 AIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACM 382
           A+ LF  M+  GV+ + VT+ ++L AC +   +  GR   GF V  +   + NV   + +
Sbjct: 372 ALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAV--RVHLLDNVHVGSAL 429

Query: 383 VDLLARSGSLREAFEVMRCMPFDPTKAM--WGSLL 415
           +D+ A+ G +  +  V   M   PTK +  W SL+
Sbjct: 430 IDMYAKCGRINLSQIVFNMM---PTKNLVCWNSLM 461



 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 129/288 (44%), Gaps = 44/288 (15%)

Query: 154 QAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGF 213
           +    HA +LK G  +D Y+   L+  Y+ +   F+    +   +    + S++ +I   
Sbjct: 33  KTTQAHARILKSGAQNDGYISAKLIASYS-NYNCFNDADLVLQSIPDPTIYSFSSLIYAL 91

Query: 214 RNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDV 273
             A  F  ++  F +M   G+ P+   + N    CA+  A ++G  IH     +G ++D 
Sbjct: 92  TKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDA 151

Query: 274 VLGTALIDMYAKCGR-------------------------------VEEGVRVFSSVK-- 300
            +  ++  MY +CGR                               +EE VR+ S ++  
Sbjct: 152 FVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESS 211

Query: 301 --EKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMG 358
             E N+ +WN ++ G   +   +EA+ +F ++   G   D+VT+ +VL +   S +++MG
Sbjct: 212 GIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMG 271

Query: 359 RQIFGFLVEGKYGFIPNVKHYACMVDLLARSG------SLREAFEVMR 400
           R I G+++  K G + +    + M+D+  +SG      SL   FE+M 
Sbjct: 272 RLIHGYVI--KQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMME 317


>AT5G44230.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:17814336-17816309 FORWARD
           LENGTH=657
          Length = 657

 Score =  244 bits (623), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 142/425 (33%), Positives = 224/425 (52%), Gaps = 40/425 (9%)

Query: 99  FIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSV 158
           F++ ++IR ++       ++   +++  M +  I P  +TF  L K+          +  
Sbjct: 115 FLWTAVIRGYAIEGKFDEAI---AMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQF 171

Query: 159 HAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWT----------- 207
           HA   +L     +YV N+++ +Y     +    R++FDEM  RDV+SWT           
Sbjct: 172 HAQTFRLRGFCFVYVGNTMIDMYVKCESI-DCARKVFDEMPERDVISWTELIAAYARVGN 230

Query: 208 --------------------VMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAA 247
                                M+ GF    K  +AL  F++M+ +G+  + VT+   ++A
Sbjct: 231 MECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISA 290

Query: 248 CADSGAVEMGAWIHDFIRRNGWELD--VVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVF 305
           CA  GA +         +++G+     VV+G+ALIDMY+KCG VEE V VF S+  KNVF
Sbjct: 291 CAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVF 350

Query: 306 TWNAVIKGLALAKSGEEAIRLFNRM-EQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGF 364
           T++++I GLA     +EA+ LF+ M  Q  ++ + VT +  L AC+HSGLVD GRQ+F  
Sbjct: 351 TYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDS 410

Query: 365 LVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDL 424
           + +  +G  P   HY CMVDLL R+G L+EA E+++ M  +P   +WG+LL + +   + 
Sbjct: 411 MYQ-TFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNP 469

Query: 425 EFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEV 484
           E +E  A  L ELEP     Y+ LSN+YA  G W  V +VR ++K++ L K    S V V
Sbjct: 470 EIAEIAAEHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWV-V 528

Query: 485 EEQGH 489
           ++ G 
Sbjct: 529 DKNGQ 533



 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 122/294 (41%), Gaps = 34/294 (11%)

Query: 142 LFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAA-SPRLFSLCRQLFDEMTH 200
           L   L    +  Q + +H HVL+ G     Y+   L+         +    R++ + +  
Sbjct: 52  LISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQF 111

Query: 201 RDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWI 260
           R+   WT +I G+   GKFD+A+  +  M+   + P   T    L AC     + +G   
Sbjct: 112 RNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQF 171

Query: 261 H-DFIRRNGWELDVVLGTALIDMYAKC-------------------------------GR 288
           H    R  G+   V +G  +IDMY KC                               G 
Sbjct: 172 HAQTFRLRGFCF-VYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGN 230

Query: 289 VEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSA 348
           +E    +F S+  K++  W A++ G A     +EA+  F+RME+ G+RADEVT+   +SA
Sbjct: 231 MECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISA 290

Query: 349 CNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCM 402
           C   G      +      +  Y    +V   + ++D+ ++ G++ EA  V   M
Sbjct: 291 CAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSM 344



 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 87/191 (45%), Gaps = 14/191 (7%)

Query: 240 TMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEE--GVRVFS 297
           ++++ L  C +   ++    IH  + R G +    + T LI    K G   +    RV  
Sbjct: 51  SLISKLDDCINLNQIKQ---IHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIE 107

Query: 298 SVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDM 357
            V+ +N F W AVI+G A+    +EAI ++  M ++ +     T  A+L AC     +++
Sbjct: 108 PVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNL 167

Query: 358 GRQIFG--FLVEG-KYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSL 414
           GRQ     F + G  + ++ N      M+D+  +  S+  A +V   MP +     W  L
Sbjct: 168 GRQFHAQTFRLRGFCFVYVGNT-----MIDMYVKCESIDCARKVFDEMP-ERDVISWTEL 221

Query: 415 LVSSKSQGDLE 425
           + +    G++E
Sbjct: 222 IAAYARVGNME 232


>AT3G26782.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:9850594-9852682 FORWARD
           LENGTH=659
          Length = 659

 Score =  243 bits (619), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 137/406 (33%), Positives = 232/406 (57%), Gaps = 12/406 (2%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHM--HRNTILPNHYTFPFLFKSLSAPC 150
           +P+ ++  + S+IR +     + N+L  +S+F  +    N      +       S+ + C
Sbjct: 137 IPKRNIVSWTSMIRGYDL---NGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISAC 193

Query: 151 HFAQA----QSVHAHVLKLGHLHDIYVHNSLLGVYAASPRL-FSLCRQLFDEMTHRDVVS 205
               A    +S+H+ V+K G    + V N+LL  YA       ++ R++FD++  +D VS
Sbjct: 194 SRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVS 253

Query: 206 WTVMIMGFRNAGKFDDALLAFEQMQYAGVAP-NRVTMVNALAACADSGAVEMGAWIHDFI 264
           +  ++  +  +G  ++A   F ++    V   N +T+   L A + SGA+ +G  IHD +
Sbjct: 254 YNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQV 313

Query: 265 RRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAI 324
            R G E DV++GT++IDMY KCGRVE   + F  +K KNV +W A+I G  +     +A+
Sbjct: 314 IRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKAL 373

Query: 325 RLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVD 384
            LF  M   GVR + +T ++VL+AC+H+GL   G + F  + +G++G  P ++HY CMVD
Sbjct: 374 ELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAM-KGRFGVEPGLEHYGCMVD 432

Query: 385 LLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAY 444
           LL R+G L++A+++++ M   P   +W SLL + +   ++E +E    +L EL+ +N  Y
Sbjct: 433 LLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGY 492

Query: 445 YVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGHT 490
           Y+ LS++YA+ GRW DVE+VR +MK+R L K  G S +E+  + H 
Sbjct: 493 YMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHV 538



 Score =  119 bits (299), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 163/322 (50%), Gaps = 22/322 (6%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           V +  VF +NS+I   + S    +S   L  F+ M + ++ P   +FP   K+ S+    
Sbjct: 36  VDKTDVFSWNSVIADLARSG---DSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDI 92

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMG 212
              +  H      G+  DI+V ++L+ +Y+   +L    R++FDE+  R++VSWT MI G
Sbjct: 93  FSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLED-ARKVFDEIPKRNIVSWTSMIRG 151

Query: 213 FRNAGKFDDA------LLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRR 266
           +   G   DA      LL  E      +  + + +V+ ++AC+   A  +   IH F+ +
Sbjct: 152 YDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIK 211

Query: 267 NGWELDVVLGTALIDMYAKCGRVEEGV----RVFSSVKEKNVFTWNAVIKGLALAKSGEE 322
            G++  V +G  L+D YAK G  E GV    ++F  + +K+  ++N+++   A +    E
Sbjct: 212 RGFDRGVSVGNTLLDAYAKGG--EGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNE 269

Query: 323 AIRLFNRMEQDGVRA-DEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYAC 381
           A  +F R+ ++ V   + +TL  VL A +HSG + +G+ I   ++  + G   +V     
Sbjct: 270 AFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVI--RMGLEDDVIVGTS 327

Query: 382 MVDLLARSGSL---REAFEVMR 400
           ++D+  + G +   R+AF+ M+
Sbjct: 328 IIDMYCKCGRVETARKAFDRMK 349


>AT5G52630.1 | Symbols: MEF1 | mitochondrial RNAediting factor 1 |
           chr5:21350375-21352141 FORWARD LENGTH=588
          Length = 588

 Score =  242 bits (617), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 131/370 (35%), Positives = 214/370 (57%), Gaps = 3/370 (0%)

Query: 121 LSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGV 180
           L     M    + P+ +  P   KS +        +SVH   +K G+  D++V +SL+ +
Sbjct: 101 LEFLKKMMAGNLRPDDHVLPSATKSCAILSRCDIGRSVHCLSMKTGYDADVFVGSSLVDM 160

Query: 181 YAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVT 240
           YA    +    R++FDEM  R+VV+W+ M+ G+   G+ ++AL  F++  +  +A N  +
Sbjct: 161 YAKCGEIV-YARKMFDEMPQRNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAVNDYS 219

Query: 241 MVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVK 300
             + ++ CA+S  +E+G  IH    ++ ++    +G++L+ +Y+KCG  E   +VF+ V 
Sbjct: 220 FSSVISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQVFNEVP 279

Query: 301 EKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQ 360
            KN+  WNA++K  A     ++ I LF RM+  G++ + +T L VL+AC+H+GLVD GR 
Sbjct: 280 VKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVDEGRY 339

Query: 361 IFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKS 420
            F  + E +    P  KHYA +VD+L R+G L+EA EV+  MP DPT+++WG+LL S   
Sbjct: 340 YFDQMKESR--IEPTDKHYASLVDMLGRAGRLQEALEVITNMPIDPTESVWGALLTSCTV 397

Query: 421 QGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCS 480
             + E + F A K+ EL P +S  ++ LSN YA  GR++D  K R +++DR   K+ G S
Sbjct: 398 HKNTELAAFAADKVFELGPVSSGMHISLSNAYAADGRFEDAAKARKLLRDRGEKKETGLS 457

Query: 481 SVEVEEQGHT 490
            VE   + HT
Sbjct: 458 WVEERNKVHT 467


>AT4G21065.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:11246375-11247763 FORWARD
           LENGTH=462
          Length = 462

 Score =  242 bits (617), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 127/336 (37%), Positives = 205/336 (61%), Gaps = 3/336 (0%)

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFR 214
            +++H+ V++ G    IYV NSLL +YA    + S   ++FD+M  +D+V+W  +I GF 
Sbjct: 7   GETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVAS-AYKVFDKMPEKDLVAWNSVINGFA 65

Query: 215 NAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVV 274
             GK ++AL  + +M   G+ P+  T+V+ L+ACA  GA+ +G  +H ++ + G   ++ 
Sbjct: 66  ENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLH 125

Query: 275 LGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQ-D 333
               L+D+YA+CGRVEE   +F  + +KN  +W ++I GLA+   G+EAI LF  ME  +
Sbjct: 126 SSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTE 185

Query: 334 GVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLR 393
           G+   E+T + +L AC+H G+V  G + F  + E +Y   P ++H+ CMVDLLAR+G ++
Sbjct: 186 GLLPCEITFVGILYACSHCGMVKEGFEYFRRMRE-EYKIEPRIEHFGCMVDLLARAGQVK 244

Query: 394 EAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYA 453
           +A+E ++ MP  P   +W +LL +    GD + +EF   ++++LEP +S  YV LSN+YA
Sbjct: 245 KAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYA 304

Query: 454 EMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
              RW DV+K+R  M    + K  G S VEV  + H
Sbjct: 305 SEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVH 340



 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 89/169 (52%), Gaps = 3/169 (1%)

Query: 254 VEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKG 313
           V +G  IH  + R+G+   + +  +L+ +YA CG V    +VF  + EK++  WN+VI G
Sbjct: 4   VRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVING 63

Query: 314 LALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFI 373
            A     EEA+ L+  M   G++ D  T++++LSAC   G + +G+++  +++  K G  
Sbjct: 64  FAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMI--KVGLT 121

Query: 374 PNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQG 422
            N+     ++DL AR G + EA  +   M  D     W SL+V     G
Sbjct: 122 RNLHSSNVLLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLIVGLAVNG 169



 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 109/225 (48%), Gaps = 13/225 (5%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P   +  +NS+I  F+ +     +L   +++  M+   I P+ +T   L  + +     
Sbjct: 49  MPEKDLVAWNSVINGFAENGKPEEAL---ALYTEMNSKGIKPDGFTIVSLLSACAKIGAL 105

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMG 212
              + VH +++K+G   +++  N LL +YA   R+    + LFDEM  ++ VSWT +I+G
Sbjct: 106 TLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRV-EEAKTLFDEMVDKNSVSWTSLIVG 164

Query: 213 FRNAGKFDDALLAFEQMQYA-GVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
               G   +A+  F+ M+   G+ P  +T V  L AC+  G V+ G    ++ RR   E 
Sbjct: 165 LAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEG---FEYFRRMREEY 221

Query: 272 DVVLGT----ALIDMYAKCGRVEEGVRVFSSVK-EKNVFTWNAVI 311
            +         ++D+ A+ G+V++      S+  + NV  W  ++
Sbjct: 222 KIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLL 266


>AT4G14170.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:8176709-8178142 REVERSE
           LENGTH=477
          Length = 477

 Score =  242 bits (617), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 135/391 (34%), Positives = 221/391 (56%), Gaps = 7/391 (1%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNT-ILPNHYTFPFLFKSLSAPCH 151
           +P  ++F +N +I  FS S     S+    +F  M R + + P+ +T P + ++ SA   
Sbjct: 93  MPYRNIFSWNIIIGEFSRSGFASKSI---DLFLRMWRESCVRPDDFTLPLILRACSASRE 149

Query: 152 FAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIM 211
                 +H   LKLG    ++V ++L+ +Y    +L    R+LFD+M  RD V +T M  
Sbjct: 150 AKSGDLIHVLCLKLGFSSSLFVSSALVIMYVDMGKLLH-ARKLFDDMPVRDSVLYTAMFG 208

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
           G+   G+    L  F +M Y+G A + V MV+ L AC   GA++ G  +H +  R    L
Sbjct: 209 GYVQQGEAMLGLAMFREMGYSGFALDSVVMVSLLMACGQLGALKHGKSVHGWCIRRCSCL 268

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRME 331
            + LG A+ DMY KC  ++    VF ++  ++V +W+++I G  L      + +LF+ M 
Sbjct: 269 GLNLGNAITDMYVKCSILDYAHTVFVNMSRRDVISWSSLILGYGLDGDVVMSFKLFDEML 328

Query: 332 QDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGS 391
           ++G+  + VT L VLSAC H GLV+     F  + E  Y  +P +KHYA + D ++R+G 
Sbjct: 329 KEGIEPNAVTFLGVLSACAHGGLVEKSWLYFRLMQE--YNIVPELKHYASVADCMSRAGL 386

Query: 392 LREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNL 451
           L EA + +  MP  P +A+ G++L   K  G++E  E VAR+L++L+P  ++YYV L+ L
Sbjct: 387 LEEAEKFLEDMPVKPDEAVMGAVLSGCKVYGNVEVGERVARELIQLKPRKASYYVTLAGL 446

Query: 452 YAEMGRWDDVEKVRGMMKDRQLTKDLGCSSV 482
           Y+  GR+D+ E +R  MK++Q++K  GCSS+
Sbjct: 447 YSAAGRFDEAESLRQWMKEKQISKVPGCSSI 477



 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 92/199 (46%), Gaps = 1/199 (0%)

Query: 170 DIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQM 229
           ++ + + L+  Y+    LF     +F  M +R++ SW ++I  F  +G    ++  F +M
Sbjct: 65  NVVLSSKLVLAYSKLNHLFPTSLSVFWHMPYRNIFSWNIIIGEFSRSGFASKSIDLFLRM 124

Query: 230 -QYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGR 288
            + + V P+  T+   L AC+ S   + G  IH    + G+   + + +AL+ MY   G+
Sbjct: 125 WRESCVRPDDFTLPLILRACSASREAKSGDLIHVLCLKLGFSSSLFVSSALVIMYVDMGK 184

Query: 289 VEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSA 348
           +    ++F  +  ++   + A+  G          + +F  M   G   D V ++++L A
Sbjct: 185 LLHARKLFDDMPVRDSVLYTAMFGGYVQQGEAMLGLAMFREMGYSGFALDSVVMVSLLMA 244

Query: 349 CNHSGLVDMGRQIFGFLVE 367
           C   G +  G+ + G+ + 
Sbjct: 245 CGQLGALKHGKSVHGWCIR 263


>AT3G09040.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:2761195-2764281 REVERSE
           LENGTH=1028
          Length = 1028

 Score =  241 bits (615), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 140/400 (35%), Positives = 217/400 (54%), Gaps = 9/400 (2%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P   V   N+LI  +S     +N    + +F  M    + P+  TF  + ++   P   
Sbjct: 590 LPEWSVVSMNALIAGYSQ----NNLEEAVVLFQEMLTRGVNPSEITFATIVEACHKPESL 645

Query: 153 AQAQSVHAHVLKLGHLHD-IYVHNSLLGVYAASPRLFSLCRQLFDEMTH-RDVVSWTVMI 210
                 H  + K G   +  Y+  SLLG+Y  S  +   C  LF E++  + +V WT M+
Sbjct: 646 TLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEAC-ALFSELSSPKSIVLWTGMM 704

Query: 211 MGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWE 270
            G    G +++AL  +++M++ GV P++ T V  L  C+   ++  G  IH  I     +
Sbjct: 705 SGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHD 764

Query: 271 LDVVLGTALIDMYAKCGRVEEGVRVFSSVKEK-NVFTWNAVIKGLALAKSGEEAIRLFNR 329
           LD +    LIDMYAKCG ++   +VF  ++ + NV +WN++I G A     E+A+++F+ 
Sbjct: 765 LDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDS 824

Query: 330 MEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARS 389
           M Q  +  DE+T L VL+AC+H+G V  GR+IF  ++ G+YG    V H ACMVDLL R 
Sbjct: 825 MRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMMI-GQYGIEARVDHVACMVDLLGRW 883

Query: 390 GSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLS 449
           G L+EA + +      P   +W SLL + +  GD    E  A KL+ELEP NS+ YV LS
Sbjct: 884 GYLQEADDFIEAQNLKPDARLWSSLLGACRIHGDDIRGEISAEKLIELEPQNSSAYVLLS 943

Query: 450 NLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
           N+YA  G W+    +R +M+DR + K  G S ++VE++ H
Sbjct: 944 NIYASQGCWEKANALRKVMRDRGVKKVPGYSWIDVEQRTH 983



 Score =  135 bits (341), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 170/344 (49%), Gaps = 17/344 (4%)

Query: 96  PHVFIFNSLIRAFSHSHHHHNSLTPLSI--FAHMHRNTILPNHYTFPFLFKSLSAPCHFA 153
           P V  +N +I     S H       ++I  F +M ++++     T   +  ++    +  
Sbjct: 290 PDVVAWNVMI-----SGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLD 344

Query: 154 QAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGF 213
               VHA  +KLG   +IYV +SL+ +Y+   ++ +  + +F+ +  ++ V W  MI G+
Sbjct: 345 LGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAK-VFEALEEKNDVFWNAMIRGY 403

Query: 214 RNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDV 273
            + G+    +  F  M+ +G   +  T  + L+ CA S  +EMG+  H  I +     ++
Sbjct: 404 AHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNL 463

Query: 274 VLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQD 333
            +G AL+DMYAKCG +E+  ++F  + +++  TWN +I      ++  EA  LF RM   
Sbjct: 464 FVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLC 523

Query: 334 GVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLR 393
           G+ +D   L + L AC H   +  G+Q+    V  K G   ++   + ++D+ ++ G ++
Sbjct: 524 GIVSDGACLASTLKACTHVHGLYQGKQVHCLSV--KCGLDRDLHTGSSLIDMYSKCGIIK 581

Query: 394 EAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLE-----FSEFVAR 432
           +A +V   +P     +M  + L++  SQ +LE     F E + R
Sbjct: 582 DARKVFSSLPEWSVVSM--NALIAGYSQNNLEEAVVLFQEMLTR 623



 Score =  125 bits (315), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 151/324 (46%), Gaps = 12/324 (3%)

Query: 53  IQAQLILHNLQSNPTIAHHFITVCQSHXXXXXXXXXXXXXVPRPHVFIFNSLIRAFSHSH 112
           + A+ I   L SN  +    +++                   +  VF +N++IR ++H+ 
Sbjct: 349 VHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVF-WNAMIRGYAHNG 407

Query: 113 HHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIY 172
             H     + +F  M  +    + +TF  L  + +A          H+ ++K     +++
Sbjct: 408 ESHK---VMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLF 464

Query: 173 VHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYA 232
           V N+L+ +YA    L    RQ+F+ M  RD V+W  +I  +       +A   F++M   
Sbjct: 465 VGNALVDMYAKCGALED-ARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLC 523

Query: 233 GVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEG 292
           G+  +   + + L AC     +  G  +H    + G + D+  G++LIDMY+KCG +++ 
Sbjct: 524 GIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDA 583

Query: 293 VRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHS 352
            +VFSS+ E +V + NA+I G +   + EEA+ LF  M   GV   E+T   ++ AC+  
Sbjct: 584 RKVFSSLPEWSVVSMNALIAGYS-QNNLEEAVVLFQEMLTRGVNPSEITFATIVEACHKP 642

Query: 353 GLVDMGRQIF------GFLVEGKY 370
             + +G Q        GF  EG+Y
Sbjct: 643 ESLTLGTQFHGQITKRGFSSEGEY 666



 Score =  115 bits (287), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 137/287 (47%), Gaps = 10/287 (3%)

Query: 134 PNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQ 193
           PN   +  LF          +A  V   +   GH  D     +++  Y    +L    R 
Sbjct: 224 PNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVTVINTYIRLGKLKD-ARL 282

Query: 194 LFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGA 253
           LF EM+  DVV+W VMI G    G    A+  F  M+ + V   R T+ + L+A      
Sbjct: 283 LFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVAN 342

Query: 254 VEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKG 313
           +++G  +H    + G   ++ +G++L+ MY+KC ++E   +VF +++EKN   WNA+I+G
Sbjct: 343 LDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRG 402

Query: 314 LALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYG-- 371
            A      + + LF  M+  G   D+ T  ++LS C  S  ++MG Q    +++ K    
Sbjct: 403 YAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKN 462

Query: 372 -FIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVS 417
            F+ N      +VD+ A+ G+L +A ++   M  D     W +++ S
Sbjct: 463 LFVGNA-----LVDMYAKCGALEDARQIFERMC-DRDNVTWNTIIGS 503



 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 150/322 (46%), Gaps = 12/322 (3%)

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFR 214
            ++VH+  L LG   +  + N+++ +YA   ++ S   + FD    +DV +W  M+  + 
Sbjct: 79  GKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQV-SYAEKQFD-FLEKDVTAWNSMLSMYS 136

Query: 215 NAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVV 274
           + GK    L +F  +    + PN+ T    L+ CA    VE G  IH  + + G E +  
Sbjct: 137 SIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSY 196

Query: 275 LGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDG 334
            G AL+DMYAKC R+ +  RVF  + + N   W  +  G   A   EEA+ +F RM  +G
Sbjct: 197 CGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEG 256

Query: 335 VRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLRE 394
            R D +  + V++     G +   R +FG +        P+V  +  M+    + G    
Sbjct: 257 HRPDHLAFVTVINTYIRLGKLKDARLLFGEMSS------PDVVAWNVMISGHGKRGCETV 310

Query: 395 AFEV---MRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYY-VHLSN 450
           A E    MR      T++  GS+L +     +L+    V  + ++L  A++ Y    L +
Sbjct: 311 AIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVS 370

Query: 451 LYAEMGRWDDVEKVRGMMKDRQ 472
           +Y++  + +   KV   ++++ 
Sbjct: 371 MYSKCEKMEAAAKVFEALEEKN 392



 Score = 85.5 bits (210), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 63/303 (20%), Positives = 126/303 (41%), Gaps = 39/303 (12%)

Query: 121 LSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGV 180
           L  F  +  N I PN +TF  +  + +   +    + +H  ++K+G   + Y   +L+ +
Sbjct: 145 LRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGGALVDM 204

Query: 181 YAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVT 240
           YA   R+ S  R++F+ +   + V WT +  G+  AG  ++A+L FE+M+  G  P+ + 
Sbjct: 205 YAKCDRI-SDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLA 263

Query: 241 MVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVK 300
            V                                    +I+ Y + G++++   +F  + 
Sbjct: 264 FVT-----------------------------------VINTYIRLGKLKDARLLFGEMS 288

Query: 301 EKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQ 360
             +V  WN +I G         AI  F  M +  V++   TL +VLSA      +D+G  
Sbjct: 289 SPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLV 348

Query: 361 IFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKS 420
           +    +  K G   N+   + +V + ++   +  A +V   +  +     W +++     
Sbjct: 349 VHAEAI--KLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALE-EKNDVFWNAMIRGYAH 405

Query: 421 QGD 423
            G+
Sbjct: 406 NGE 408



 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 103/243 (42%), Gaps = 14/243 (5%)

Query: 253 AVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIK 312
           A+ +G  +H      G + +  LG A++D+YAKC +V    + F  + EK+V  WN+++ 
Sbjct: 75  ALRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFDFL-EKDVTAWNSMLS 133

Query: 313 GLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGF 372
             +      + +R F  + ++ +  ++ T   VLS C     V+ GRQI   ++  K G 
Sbjct: 134 MYSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMI--KMGL 191

Query: 373 IPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVAR 432
             N      +VD+ A+   + +A  V   +  DP    W  L       G  E +  V  
Sbjct: 192 ERNSYCGGALVDMYAKCDRISDARRVFEWI-VDPNTVCWTCLFSGYVKAGLPEEAVLVFE 250

Query: 433 KLV-ELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTK---------DLGCSSV 482
           ++  E    +   +V + N Y  +G+  D   + G M    +             GC +V
Sbjct: 251 RMRDEGHRPDHLAFVTVINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETV 310

Query: 483 EVE 485
            +E
Sbjct: 311 AIE 313


>AT1G31430.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:11254025-11255737 REVERSE
           LENGTH=570
          Length = 570

 Score =  240 bits (613), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 125/312 (40%), Positives = 195/312 (62%), Gaps = 5/312 (1%)

Query: 181 YAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVT 240
           Y ++ R+    R LF+    +DVV WT M+ G+    +FD+AL  F  MQ AG+ P+   
Sbjct: 223 YVSTGRI-DEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFV 281

Query: 241 MVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVK 300
           +V+ L  CA +GA+E G WIH +I  N   +D V+GTAL+DMYAKCG +E  + VF  +K
Sbjct: 282 LVSLLTGCAQTGALEQGKWIHGYINENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIK 341

Query: 301 EKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQ 360
           E++  +W ++I GLA+      A+ L+  ME  GVR D +T +AVL+ACNH G V  GR+
Sbjct: 342 ERDTASWTSLIYGLAMNGMSGRALDLYYEMENVGVRLDAITFVAVLTACNHGGFVAEGRK 401

Query: 361 IFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAM---WGSLLVS 417
           IF  + E ++   P  +H +C++DLL R+G L EA E++  M  +  + +   + SLL +
Sbjct: 402 IFHSMTE-RHNVQPKSEHCSCLIDLLCRAGLLDEAEELIDKMRGESDETLVPVYCSLLSA 460

Query: 418 SKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDL 477
           +++ G+++ +E VA KL ++E ++S+ +  L+++YA   RW+DV  VR  MKD  + K  
Sbjct: 461 ARNYGNVKIAERVAEKLEKVEVSDSSAHTLLASVYASANRWEDVTNVRRKMKDLGIRKFP 520

Query: 478 GCSSVEVEEQGH 489
           GCSS+E++  GH
Sbjct: 521 GCSSIEIDGVGH 532



 Score =  160 bits (406), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 99/353 (28%), Positives = 180/353 (50%), Gaps = 42/353 (11%)

Query: 96  PHVFIFNSLIRAFSHSHHHHNSLTP-LSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQ 154
           P + ++N ++++ +       S T  L++F  +    + P+++T P + KS+       +
Sbjct: 9   PSLLMYNKMLKSLADG----KSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIE 64

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFR 214
            + VH + +K G   D YV NSL+G+YA+  ++  +  ++FDEM  RDVVSW  +I  + 
Sbjct: 65  GEKVHGYAVKAGLEFDSYVSNSLMGMYASLGKI-EITHKVFDEMPQRDVVSWNGLISSYV 123

Query: 215 NAGKFDDALLAFEQM-QYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDV 273
             G+F+DA+  F++M Q + +  +  T+V+ L+AC+    +E+G  I+ F+    +E+ V
Sbjct: 124 GNGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVVTE-FEMSV 182

Query: 274 VLGTALIDMYAKCGRVEEGVRVFSSVKEKN------------------------------ 303
            +G AL+DM+ KCG +++   VF S+++KN                              
Sbjct: 183 RIGNALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVK 242

Query: 304 -VFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIF 362
            V  W A++ G       +EA+ LF  M+  G+R D   L+++L+ C  +G ++ G+ I 
Sbjct: 243 DVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIH 302

Query: 363 GFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLL 415
           G++ E +      V     +VD+ A+ G +  A EV   +    T A W SL+
Sbjct: 303 GYINENRVTVDKVVG--TALVDMYAKCGCIETALEVFYEIKERDT-ASWTSLI 352



 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 135/296 (45%), Gaps = 24/296 (8%)

Query: 206 WTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIR 265
           +  M+    +   F   L  F +++  G+ P+  T+   L +      V  G  +H +  
Sbjct: 14  YNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVHGYAV 73

Query: 266 RNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIR 325
           + G E D  +  +L+ MYA  G++E   +VF  + +++V +WN +I         E+AI 
Sbjct: 74  KAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGNGRFEDAIG 133

Query: 326 LFNRMEQD-GVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVD 384
           +F RM Q+  ++ DE T+++ LSAC+    +++G +I+ F+V     F  +V+    +VD
Sbjct: 134 VFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVVT---EFEMSVRIGNALVD 190

Query: 385 LLARSGSL---REAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPAN 441
           +  + G L   R  F+ MR    D     W S++    S G ++     AR L E  P  
Sbjct: 191 MFCKCGCLDKARAVFDSMR----DKNVKCWTSMVFGYVSTGRID----EARVLFERSPVK 242

Query: 442 S-AYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKD--------LGCSSVEVEEQG 488
               +  + N Y +  R+D+  ++   M+   +  D         GC+     EQG
Sbjct: 243 DVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQG 298


>AT1G68930.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr1:25918314-25920545 FORWARD LENGTH=743
          Length = 743

 Score =  240 bits (612), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 115/370 (31%), Positives = 214/370 (57%), Gaps = 2/370 (0%)

Query: 121 LSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGV 180
           +  F  M    +  + Y F  +  +        + + +HA +++      IYV ++L+ +
Sbjct: 255 IECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDM 314

Query: 181 YAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVT 240
           Y    +     + +FD M  ++VVSWT M++G+   G+ ++A+  F  MQ +G+ P+  T
Sbjct: 315 YCKC-KCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYT 373

Query: 241 MVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVK 300
           +  A++ACA+  ++E G+  H     +G    V +  +L+ +Y KCG +++  R+F+ + 
Sbjct: 374 LGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMN 433

Query: 301 EKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQ 360
            ++  +W A++   A      E I+LF++M Q G++ D VTL  V+SAC+ +GLV+ G++
Sbjct: 434 VRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQR 493

Query: 361 IFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKS 420
            F  L+  +YG +P++ HY+CM+DL +RSG L EA   +  MPF P    W +LL + ++
Sbjct: 494 YFK-LMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRN 552

Query: 421 QGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCS 480
           +G+LE  ++ A  L+EL+P + A Y  LS++YA  G+WD V ++R  M+++ + K+ G S
Sbjct: 553 KGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQS 612

Query: 481 SVEVEEQGHT 490
            ++ + + H+
Sbjct: 613 WIKWKGKLHS 622



 Score =  115 bits (288), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 156/369 (42%), Gaps = 62/369 (16%)

Query: 93  VPRPHVFIFNSLIRAFSHSHH-----------------------HHNSLTPLSIFAHMHR 129
           +P+P++F +N+L+ A+S +                            SL+ L   A    
Sbjct: 67  IPQPNLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAY 126

Query: 130 NTILPN------HYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYA- 182
           NT++ +        T   + K  S+  H +  + +H  V+KLG    + V + LL +YA 
Sbjct: 127 NTMMRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYAN 186

Query: 183 ------ASPRLFSL-----------------------CRQLFDEMTHRDVVSWTVMIMGF 213
                 A    + L                         QLF  M  +D VSW  MI G 
Sbjct: 187 VGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGM-EKDSVSWAAMIKGL 245

Query: 214 RNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDV 273
              G   +A+  F +M+  G+  ++    + L AC   GA+  G  IH  I R  ++  +
Sbjct: 246 AQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHI 305

Query: 274 VLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQD 333
            +G+ALIDMY KC  +     VF  +K+KNV +W A++ G       EEA+++F  M++ 
Sbjct: 306 YVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRS 365

Query: 334 GVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLR 393
           G+  D  TL   +SAC +   ++ G Q  G  +    G I  V     +V L  + G + 
Sbjct: 366 GIDPDHYTLGQAISACANVSSLEEGSQFHGKAITS--GLIHYVTVSNSLVTLYGKCGDID 423

Query: 394 EAFEVMRCM 402
           ++  +   M
Sbjct: 424 DSTRLFNEM 432



 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 145/330 (43%), Gaps = 35/330 (10%)

Query: 127 MHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPR 186
           +H N I    Y   FL+ ++       ++ +    V       +++  N+LL  Y+ +  
Sbjct: 28  IHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAG- 86

Query: 187 LFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAP-NRVTMVNAL 245
           L S     F+++  RD V+W V+I G+  +G    A+ A+  M     A   RVT++  L
Sbjct: 87  LISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTML 146

Query: 246 AACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVF 305
              + +G V +G  IH  + + G+E  +++G+ L+ MYA  G + +  +VF  + ++N  
Sbjct: 147 KLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTV 206

Query: 306 TWNAVIKGLALAKSGEEAIRLFNRMEQD------------------------------GV 335
            +N+++ GL      E+A++LF  ME+D                              G+
Sbjct: 207 MYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGL 266

Query: 336 RADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREA 395
           + D+    +VL AC   G ++ G+QI   ++  +  F  ++   + ++D+  +   L  A
Sbjct: 267 KMDQYPFGSVLPACGGLGAINEGKQIHACII--RTNFQDHIYVGSALIDMYCKCKCLHYA 324

Query: 396 FEVMRCMPFDPTKAMWGSLLVSSKSQGDLE 425
             V   M        W +++V     G  E
Sbjct: 325 KTVFDRMK-QKNVVSWTAMVVGYGQTGRAE 353


>AT4G18750.1 | Symbols: DOT4 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:10304850-10307465 FORWARD
           LENGTH=871
          Length = 871

 Score =  239 bits (609), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 126/367 (34%), Positives = 208/367 (56%), Gaps = 3/367 (0%)

Query: 120 PLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLG 179
            + +F  M    I P+ YT   +    +      + + VH  + +     DI+V N+L+ 
Sbjct: 381 AVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMD 440

Query: 180 VYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQM-QYAGVAPNR 238
           +YA    +      +F EM  +D++SW  +I G+      ++AL  F  + +    +P+ 
Sbjct: 441 MYAKCGSM-QEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDE 499

Query: 239 VTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSS 298
            T+   L ACA   A + G  IH +I RNG+  D  +  +L+DMYAKCG +     +F  
Sbjct: 500 RTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDD 559

Query: 299 VKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMG 358
           +  K++ +W  +I G  +   G+EAI LFN+M Q G+ ADE++ +++L AC+HSGLVD G
Sbjct: 560 IASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEG 619

Query: 359 RQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSS 418
            + F  ++  +    P V+HYAC+VD+LAR+G L +A+  +  MP  P   +WG+LL   
Sbjct: 620 WRFFN-IMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGC 678

Query: 419 KSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLG 478
           +   D++ +E VA K+ ELEP N+ YYV ++N+YAE  +W+ V+++R  +  R L K+ G
Sbjct: 679 RIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPG 738

Query: 479 CSSVEVE 485
           CS +E++
Sbjct: 739 CSWIEIK 745



 Score =  151 bits (381), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 94/311 (30%), Positives = 160/311 (51%), Gaps = 9/311 (2%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           V       +N L+   + S     S+    +F  M  + +  + YTF  + KS S+    
Sbjct: 155 VKIEKALFWNILMNELAKSGDFSGSI---GLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 211

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMG 212
              + +H  +LK G      V NSL+  Y  + R+ S  R++FDEMT RDV+SW  +I G
Sbjct: 212 HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDS-ARKVFDEMTERDVISWNSIING 270

Query: 213 FRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELD 272
           + + G  +  L  F QM  +G+  +  T+V+  A CADS  + +G  +H    +  +  +
Sbjct: 271 YVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRE 330

Query: 273 VVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQ 332
                 L+DMY+KCG ++    VF  + +++V ++ ++I G A      EA++LF  ME+
Sbjct: 331 DRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEE 390

Query: 333 DGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSL 392
           +G+  D  T+ AVL+ C    L+D G+++  ++ E   GF   V +   ++D+ A+ GS+
Sbjct: 391 EGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSN--ALMDMYAKCGSM 448

Query: 393 REA---FEVMR 400
           +EA   F  MR
Sbjct: 449 QEAELVFSEMR 459



 Score =  138 bits (348), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 153/296 (51%), Gaps = 7/296 (2%)

Query: 98  VFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQS 157
           V  +NS+I  +  +      L   S+F  M  + I  +  T   +F   +     +  ++
Sbjct: 261 VISWNSIINGYVSNGLAEKGL---SVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRA 317

Query: 158 VHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAG 217
           VH+  +K     +    N+LL +Y+    L S  + +F EM+ R VVS+T MI G+   G
Sbjct: 318 VHSIGVKACFSREDRFCNTLLDMYSKCGDLDS-AKAVFREMSDRSVVSYTSMIAGYAREG 376

Query: 218 KFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGT 277
              +A+  FE+M+  G++P+  T+   L  CA    ++ G  +H++I+ N    D+ +  
Sbjct: 377 LAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSN 436

Query: 278 ALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFN-RMEQDGVR 336
           AL+DMYAKCG ++E   VFS ++ K++ +WN +I G +      EA+ LFN  +E+    
Sbjct: 437 ALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFS 496

Query: 337 ADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSL 392
            DE T+  VL AC      D GR+I G+++  + G+  +      +VD+ A+ G+L
Sbjct: 497 PDERTVACVLPACASLSAFDKGREIHGYIM--RNGYFSDRHVANSLVDMYAKCGAL 550



 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 111/230 (48%), Gaps = 3/230 (1%)

Query: 193 QLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSG 252
           ++FDE+     + W +++     +G F  ++  F++M  +GV  +  T      + +   
Sbjct: 150 RVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLR 209

Query: 253 AVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIK 312
           +V  G  +H FI ++G+     +G +L+  Y K  RV+   +VF  + E++V +WN++I 
Sbjct: 210 SVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIIN 269

Query: 313 GLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGF 372
           G       E+ + +F +M   G+  D  T+++V + C  S L+ +GR +    V  K  F
Sbjct: 270 GYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGV--KACF 327

Query: 373 IPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQG 422
               +    ++D+ ++ G L  A  V R M  D +   + S++     +G
Sbjct: 328 SREDRFCNTLLDMYSKCGDLDSAKAVFREMS-DRSVVSYTSMIAGYAREG 376



 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 90/191 (47%), Gaps = 7/191 (3%)

Query: 183 ASPRLFSLCRQLFDEMT--HRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVT 240
           AS R  S C    D +T   R V      +  F  +G  ++A+          + P   T
Sbjct: 42  ASLRTVSDC---VDSITTFDRSVTDANTQLRRFCESGNLENAVKLLCVSGKWDIDPR--T 96

Query: 241 MVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVK 300
           + + L  CADS +++ G  + +FIR NG+ +D  LG+ L  MY  CG ++E  RVF  VK
Sbjct: 97  LCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVK 156

Query: 301 EKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQ 360
            +    WN ++  LA +     +I LF +M   GV  D  T   V  + +    V  G Q
Sbjct: 157 IEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQ 216

Query: 361 IFGFLVEGKYG 371
           + GF+++  +G
Sbjct: 217 LHGFILKSGFG 227


>AT3G56550.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:20952896-20954641 REVERSE
           LENGTH=581
          Length = 581

 Score =  238 bits (606), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 146/461 (31%), Positives = 234/461 (50%), Gaps = 14/461 (3%)

Query: 35  RAVTLLKDFCHSRLHVQQIQAQLILHNLQSNPTIAHHFITVCQSHXXXXXXXXXXXXX-- 92
           R +  +   C+S   +++I + +I++ LQ +P+I +H +  C                  
Sbjct: 6   RVIVRMLQGCNSMKKLRKIHSHVIINGLQHHPSIFNHLLRFCAVSVTGSLSHAQLLFDHF 65

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHR----NTILPNHYTFPFLFKSLSA 148
              P    +N LIR FS      NS +PL+     +R    +   P+ +TF F  KS   
Sbjct: 66  DSDPSTSDWNYLIRGFS------NSSSPLNSILFYNRMLLSSVSRPDLFTFNFALKSCER 119

Query: 149 PCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTV 208
                +   +H  V++ G L D  V  SL+  Y+A+  +  +  ++FDEM  RD+VSW V
Sbjct: 120 IKSIPKCLEIHGSVIRSGFLDDAIVATSLVRCYSANGSV-EIASKVFDEMPVRDLVSWNV 178

Query: 209 MIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNG 268
           MI  F + G  + AL  +++M   GV  +  T+V  L++CA   A+ MG  +H       
Sbjct: 179 MICCFSHVGLHNQALSMYKRMGNEGVCGDSYTLVALLSSCAHVSALNMGVMLHRIACDIR 238

Query: 269 WELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFN 328
            E  V +  ALIDMYAKCG +E  + VF+ +++++V TWN++I G  +   G EAI  F 
Sbjct: 239 CESCVFVSNALIDMYAKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHGHGVEAISFFR 298

Query: 329 RMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLAR 388
           +M   GVR + +T L +L  C+H GLV  G + F  ++  ++   PNVKHY CMVDL  R
Sbjct: 299 KMVASGVRPNAITFLGLLLGCSHQGLVKEGVEHFE-IMSSQFHLTPNVKHYGCMVDLYGR 357

Query: 389 SGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHL 448
           +G L  + E++          +W +LL S K   +LE  E   +KLV+LE  N+  YV +
Sbjct: 358 AGQLENSLEMIYASSCHEDPVLWRTLLGSCKIHRNLELGEVAMKKLVQLEAFNAGDYVLM 417

Query: 449 SNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
           +++Y+          +R +++   L    G S +E+ +Q H
Sbjct: 418 TSIYSAANDAQAFASMRKLIRSHDLQTVPGWSWIEIGDQVH 458


>AT1G18485.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:6363172-6366084 FORWARD
           LENGTH=970
          Length = 970

 Score =  237 bits (605), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 138/378 (36%), Positives = 212/378 (56%), Gaps = 6/378 (1%)

Query: 114 HHNSLTP-LSIFAH--MHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHD 170
           H  S  P LS+ AH  M  + +LP+ +T   L  + S        + VH  +++     D
Sbjct: 471 HAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERD 530

Query: 171 IYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQ 230
           ++V+ S+L +Y     L ++ + LFD M  + +VSW  +I G+   G  D AL  F QM 
Sbjct: 531 LFVYLSVLSLYIHCGELCTV-QALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMV 589

Query: 231 YAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVE 290
             G+    ++M+    AC+   ++ +G   H +  ++  E D  +  +LIDMYAK G + 
Sbjct: 590 LYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSIT 649

Query: 291 EGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACN 350
           +  +VF+ +KEK+  +WNA+I G  +    +EAI+LF  M++ G   D++T L VL+ACN
Sbjct: 650 QSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACN 709

Query: 351 HSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVM-RCMPFDPTKA 409
           HSGL+  G +    + +  +G  PN+KHYAC++D+L R+G L +A  V+   M  +    
Sbjct: 710 HSGLIHEGLRYLDQM-KSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVG 768

Query: 410 MWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMK 469
           +W SLL S +   +LE  E VA KL ELEP     YV LSNLYA +G+W+DV KVR  M 
Sbjct: 769 IWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMN 828

Query: 470 DRQLTKDLGCSSVEVEEQ 487
           +  L KD GCS +E+  +
Sbjct: 829 EMSLRKDAGCSWIELNRK 846



 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 158/338 (46%), Gaps = 14/338 (4%)

Query: 97  HVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNT-ILPNHYTFPFLFKSLSAPCHFAQA 155
           ++F +N++I ++S +  +      L  F  M   T +LP+H+T+P + K+ +        
Sbjct: 150 NLFQWNAVISSYSRNELYDE---VLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIG 206

Query: 156 QSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRN 215
            +VH  V+K G + D++V N+L+  Y       +   QLFD M  R++VSW  MI  F +
Sbjct: 207 LAVHGLVVKTGLVEDVFVGNALVSFYGTHG-FVTDALQLFDIMPERNLVSWNSMIRVFSD 265

Query: 216 AGKFDDA-LLAFEQMQYAG---VAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
            G  +++ LL  E M+  G     P+  T+V  L  CA    + +G  +H +  +   + 
Sbjct: 266 NGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDK 325

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRME 331
           ++VL  AL+DMY+KCG +     +F     KNV +WN ++ G +          +  +M 
Sbjct: 326 ELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQML 385

Query: 332 QDG--VRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARS 389
             G  V+ADEVT+L  +  C H   +   +++  + +  K  F+ N       V   A+ 
Sbjct: 386 AGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSL--KQEFVYNELVANAFVASYAKC 443

Query: 390 GSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFS 427
           GSL  A  V   +    T   W +L+       D   S
Sbjct: 444 GSLSYAQRVFHGIR-SKTVNSWNALIGGHAQSNDPRLS 480



 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 129/277 (46%), Gaps = 4/277 (1%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLS-IFAHMHRNTILPNHYTFPFLFKSLSAPCH 151
           +P  ++  +NS+IR FS +     S   L  +         +P+  T   +    +    
Sbjct: 248 MPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCARERE 307

Query: 152 FAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIM 211
               + VH   +KL    ++ ++N+L+ +Y+    + +  + +F    +++VVSW  M+ 
Sbjct: 308 IGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITN-AQMIFKMNNNKNVVSWNTMVG 366

Query: 212 GFRNAGKFDDALLAFEQMQYAG--VAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGW 269
           GF   G          QM   G  V  + VT++NA+  C     +     +H +  +  +
Sbjct: 367 GFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEF 426

Query: 270 ELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNR 329
             + ++  A +  YAKCG +    RVF  ++ K V +WNA+I G A +     ++    +
Sbjct: 427 VYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQ 486

Query: 330 MEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLV 366
           M+  G+  D  T+ ++LSAC+    + +G+++ GF++
Sbjct: 487 MKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFII 523



 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 140/268 (52%), Gaps = 6/268 (2%)

Query: 156 QSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRN 215
           + +H + LK   +++  V N+ +  YA    L S  +++F  +  + V SW  +I G   
Sbjct: 415 KELHCYSLKQEFVYNELVANAFVASYAKCGSL-SYAQRVFHGIRSKTVNSWNALIGGHAQ 473

Query: 216 AGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVL 275
           +     +L A  QM+ +G+ P+  T+ + L+AC+   ++ +G  +H FI RN  E D+ +
Sbjct: 474 SNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFV 533

Query: 276 GTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGV 335
             +++ +Y  CG +     +F ++++K++ +WN VI G       + A+ +F +M   G+
Sbjct: 534 YLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGI 593

Query: 336 RADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYAC-MVDLLARSGSLRE 394
           +   ++++ V  AC+    + +GR+   + ++     + +    AC ++D+ A++GS+ +
Sbjct: 594 QLCGISMMPVFGACSLLPSLRLGREAHAYALK---HLLEDDAFIACSLIDMYAKNGSITQ 650

Query: 395 AFEVMRCMPFDPTKAMWGSLLVSSKSQG 422
           + +V   +  + + A W ++++     G
Sbjct: 651 SSKVFNGLK-EKSTASWNAMIMGYGIHG 677



 Score = 82.4 bits (202), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 117/249 (46%), Gaps = 8/249 (3%)

Query: 192 RQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAF-EQMQYAGVAPNRVTMVNALAACAD 250
           R +FD +  +++  W  +I  +     +D+ L  F E +    + P+  T    + ACA 
Sbjct: 140 RFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAG 199

Query: 251 SGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAV 310
              V +G  +H  + + G   DV +G AL+  Y   G V + +++F  + E+N+ +WN++
Sbjct: 200 MSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSM 259

Query: 311 IKGLALAKSGEEAIRLFNR-MEQDGVRA---DEVTLLAVLSACNHSGLVDMGRQIFGFLV 366
           I+  +     EE+  L    ME++G  A   D  TL+ VL  C     + +G+ + G+ V
Sbjct: 260 IRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAV 319

Query: 367 EGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEF 426
             K      +     ++D+ ++ G +  A  + + M  +     W +++    ++GD   
Sbjct: 320 --KLRLDKELVLNNALMDMYSKCGCITNAQMIFK-MNNNKNVVSWNTMVGGFSAEGDTHG 376

Query: 427 SEFVARKLV 435
           +  V R+++
Sbjct: 377 TFDVLRQML 385



 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 94/213 (44%), Gaps = 14/213 (6%)

Query: 245 LAACADSGAVEMGAWIHDFIR-----RNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSV 299
           L A      +EMG  IH  +      RN    D VL T +I MYA CG  ++   VF ++
Sbjct: 91  LQASGKRKDIEMGRKIHQLVSGSTRLRN----DDVLCTRIITMYAMCGSPDDSRFVFDAL 146

Query: 300 KEKNVFTWNAVIKGLALAKSGEEAIRLFNRM-EQDGVRADEVTLLAVLSACNHSGLVDMG 358
           + KN+F WNAVI   +  +  +E +  F  M     +  D  T   V+ AC     V +G
Sbjct: 147 RSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIG 206

Query: 359 RQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSS 418
             + G +V  K G + +V     +V      G + +A ++   MP +     W S++   
Sbjct: 207 LAVHGLVV--KTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMP-ERNLVSWNSMIRVF 263

Query: 419 KSQGDLEFSEFVARKLVELEPANSAYYVHLSNL 451
              G  E S  +  +++E E  + A+   ++ L
Sbjct: 264 SDNGFSEESFLLLGEMME-ENGDGAFMPDVATL 295


>AT3G14330.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:4779688-4782451 REVERSE
           LENGTH=710
          Length = 710

 Score =  236 bits (602), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 127/367 (34%), Positives = 208/367 (56%), Gaps = 2/367 (0%)

Query: 121 LSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGV 180
           L ++  M  + I P +++     K+          + +HA ++K     D  V+N LL +
Sbjct: 221 LIVYVDMLCSFIEPGNFSISVALKACVDLKDLRVGRGIHAQIVKRKEKVDQVVYNVLLKL 280

Query: 181 YAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVT 240
           Y  S  LF   R++FD M+ R+VV+W  +I       +  +    F +MQ   +  +  T
Sbjct: 281 YMESG-LFDDARKVFDGMSERNVVTWNSLISVLSKKVRVHEMFNLFRKMQEEMIGFSWAT 339

Query: 241 MVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVK 300
           +   L AC+   A+  G  IH  I ++  + DV L  +L+DMY KCG VE   RVF  + 
Sbjct: 340 LTTILPACSRVAALLTGKEIHAQILKSKEKPDVPLLNSLMDMYGKCGEVEYSRRVFDVML 399

Query: 301 EKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQ 360
            K++ +WN ++   A+  + EE I LF  M + GV  D +T +A+LS C+ +GL + G  
Sbjct: 400 TKDLASWNIMLNCYAINGNIEEVINLFEWMIESGVAPDGITFVALLSGCSDTGLTEYGLS 459

Query: 361 IFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKS 420
           +F  + + ++   P ++HYAC+VD+L R+G ++EA +V+  MPF P+ ++WGSLL S + 
Sbjct: 460 LFERM-KTEFRVSPALEHYACLVDILGRAGKIKEAVKVIETMPFKPSASIWGSLLNSCRL 518

Query: 421 QGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCS 480
            G++   E  A++L  LEP N   YV +SN+YA+   WD+V+K+R MMK R + K+ GCS
Sbjct: 519 HGNVSVGEIAAKELFVLEPHNPGNYVMVSNIYADAKMWDNVDKIREMMKQRGVKKEAGCS 578

Query: 481 SVEVEEQ 487
            V+V+++
Sbjct: 579 WVQVKDK 585



 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 139/285 (48%), Gaps = 22/285 (7%)

Query: 155 AQSVHAHVLKLGHL--------HDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVS- 205
           A+S+H H +K+  L        H+  + + L+ +++   RL  L R++FD++T   +++ 
Sbjct: 144 AKSLH-HGIKICSLILNNPSLRHNPKLLSKLITLFSVCRRL-DLARKIFDDVTDSSLLTE 201

Query: 206 --WTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDF 263
             W  M +G+   G   DAL+ +  M  + + P   ++  AL AC D   + +G  IH  
Sbjct: 202 KVWAAMAIGYSRNGSPRDALIVYVDMLCSFIEPGNFSISVALKACVDLKDLRVGRGIHAQ 261

Query: 264 IRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEA 323
           I +   ++D V+   L+ +Y + G  ++  +VF  + E+NV TWN++I  L+      E 
Sbjct: 262 IVKRKEKVDQVVYNVLLKLYMESGLFDDARKVFDGMSERNVVTWNSLISVLSKKVRVHEM 321

Query: 324 IRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMV 383
             LF +M+++ +     TL  +L AC+    +  G++I   +++ K    P+V     ++
Sbjct: 322 FNLFRKMQEEMIGFSWATLTTILPACSRVAALLTGKEIHAQILKSKEK--PDVPLLNSLM 379

Query: 384 DLLARSGSL---REAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLE 425
           D+  + G +   R  F+VM         A W  +L      G++E
Sbjct: 380 DMYGKCGEVEYSRRVFDVMLTKDL----ASWNIMLNCYAINGNIE 420


>AT3G22690.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Protein of
           unknown function DUF1685 (InterPro:IPR012881),
           Pentatricopeptide repeat (InterPro:IPR002885); BEST
           Arabidopsis thaliana protein match is: Tetratricopeptide
           repeat (TPR)-like superfamily protein
           (TAIR:AT2G29760.1); Has 49784 Blast hits to 14716
           proteins in 280 species: Archae - 2; Bacteria - 10;
           Metazoa - 107; Fungi - 167; Plants - 48594; Viruses - 0;
           Other Eukaryotes - 904 (source: NCBI BLink). |
           chr3:8021347-8024534 REVERSE LENGTH=938
          Length = 938

 Score =  236 bits (601), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 133/401 (33%), Positives = 216/401 (53%), Gaps = 34/401 (8%)

Query: 121 LSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGV 180
           L +F  M  + + P+  +      S S   +    +S H +VL+ G      + N+L+ +
Sbjct: 322 LGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDM 381

Query: 181 YAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQM----------- 229
           Y    R  +  R +FD M+++ VV+W  ++ G+   G+ D A   FE M           
Sbjct: 382 YMKCHRQDTAFR-IFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTI 440

Query: 230 ---------------------QYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNG 268
                                   GV  + VTM++  +AC   GA+++  WI+ +I +NG
Sbjct: 441 ISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNG 500

Query: 269 WELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFN 328
            +LDV LGT L+DM+++CG  E  + +F+S+  ++V  W A I  +A+A + E AI LF+
Sbjct: 501 IQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFD 560

Query: 329 RMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLAR 388
            M + G++ D V  +  L+AC+H GLV  G++IF  +++  +G  P   HY CMVDLL R
Sbjct: 561 DMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLK-LHGVSPEDVHYGCMVDLLGR 619

Query: 389 SGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHL 448
           +G L EA +++  MP +P   +W SLL + + QG++E + + A K+  L P  +  YV L
Sbjct: 620 AGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLL 679

Query: 449 SNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
           SN+YA  GRW+D+ KVR  MK++ L K  G SS+++  + H
Sbjct: 680 SNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTH 720



 Score =  163 bits (413), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 171/328 (52%), Gaps = 8/328 (2%)

Query: 99  FIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSV 158
           F++NSLIR ++ S   + ++    +F  M  + I P+ YTFPF   + +          +
Sbjct: 100 FMYNSLIRGYASSGLCNEAIL---LFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQI 156

Query: 159 HAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGK 218
           H  ++K+G+  D++V NSL+  YA    L S  R++FDEM+ R+VVSWT MI G+     
Sbjct: 157 HGLIVKMGYAKDLFVQNSLVHFYAECGELDS-ARKVFDEMSERNVVSWTSMICGYARRDF 215

Query: 219 FDDAL-LAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGT 277
             DA+ L F  ++   V PN VTMV  ++ACA    +E G  ++ FIR +G E++ ++ +
Sbjct: 216 AKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVS 275

Query: 278 ALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRA 337
           AL+DMY KC  ++   R+F      N+   NA+           EA+ +FN M   GVR 
Sbjct: 276 ALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRP 335

Query: 338 DEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFE 397
           D +++L+ +S+C+    +  G+   G+++   +    N+ +   ++D+  +      AF 
Sbjct: 336 DRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICN--ALIDMYMKCHRQDTAFR 393

Query: 398 VMRCMPFDPTKAMWGSLLVSSKSQGDLE 425
           +   M  + T   W S++      G+++
Sbjct: 394 IFDRMS-NKTVVTWNSIVAGYVENGEVD 420



 Score =  117 bits (294), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 149/312 (47%), Gaps = 38/312 (12%)

Query: 121 LSIFAHMHRNT-ILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLG-HLHDIYVHNSLL 178
           + +F  M R+  + PN  T   +  + +        + V+A +   G  ++D+ V ++L+
Sbjct: 220 VDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMV-SALV 278

Query: 179 GVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNR 238
            +Y     +  + ++LFDE    ++     M   +   G   +AL  F  M  +GV P+R
Sbjct: 279 DMYMKCNAI-DVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDR 337

Query: 239 VTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFS- 297
           ++M++A+++C+    +  G   H ++ RNG+E    +  ALIDMY KC R +   R+F  
Sbjct: 338 ISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDR 397

Query: 298 ------------------------------SVKEKNVFTWNAVIKGLALAKSGEEAIRLF 327
                                         ++ EKN+ +WN +I GL      EEAI +F
Sbjct: 398 MSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVF 457

Query: 328 NRME-QDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLL 386
             M+ Q+GV AD VT++++ SAC H G +D+ + I+ ++   K G   +V+    +VD+ 
Sbjct: 458 CSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYI--EKNGIQLDVRLGTTLVDMF 515

Query: 387 ARSGSLREAFEV 398
           +R G    A  +
Sbjct: 516 SRCGDPESAMSI 527


>AT3G22690.2 | Symbols:  | INVOLVED IN: photosystem II assembly,
           regulation of chlorophyll biosynthetic process,
           photosystem I assembly, thylakoid membrane organization,
           RNA modification; LOCATED IN: chloroplast; EXPRESSED IN:
           13 plant structures; EXPRESSED DURING: LP.04 four leaves
           visible, 4 anthesis, petal differentiation and expansion
           stage, E expanded cotyledon stage, D bilateral stage;
           CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat
           (InterPro:IPR002885); BEST Arabidopsis thaliana protein
           match is: Tetratricopeptide repeat (TPR)-like
           superfamily protein (TAIR:AT2G29760.1). |
           chr3:8022006-8024534 REVERSE LENGTH=842
          Length = 842

 Score =  236 bits (601), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 133/401 (33%), Positives = 216/401 (53%), Gaps = 34/401 (8%)

Query: 121 LSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGV 180
           L +F  M  + + P+  +      S S   +    +S H +VL+ G      + N+L+ +
Sbjct: 322 LGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDM 381

Query: 181 YAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQM----------- 229
           Y    R  +  R +FD M+++ VV+W  ++ G+   G+ D A   FE M           
Sbjct: 382 YMKCHRQDTAFR-IFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTI 440

Query: 230 ---------------------QYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNG 268
                                   GV  + VTM++  +AC   GA+++  WI+ +I +NG
Sbjct: 441 ISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNG 500

Query: 269 WELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFN 328
            +LDV LGT L+DM+++CG  E  + +F+S+  ++V  W A I  +A+A + E AI LF+
Sbjct: 501 IQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFD 560

Query: 329 RMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLAR 388
            M + G++ D V  +  L+AC+H GLV  G++IF  +++  +G  P   HY CMVDLL R
Sbjct: 561 DMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLK-LHGVSPEDVHYGCMVDLLGR 619

Query: 389 SGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHL 448
           +G L EA +++  MP +P   +W SLL + + QG++E + + A K+  L P  +  YV L
Sbjct: 620 AGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLL 679

Query: 449 SNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
           SN+YA  GRW+D+ KVR  MK++ L K  G SS+++  + H
Sbjct: 680 SNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTH 720



 Score =  163 bits (412), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 171/328 (52%), Gaps = 8/328 (2%)

Query: 99  FIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSV 158
           F++NSLIR ++ S   + ++    +F  M  + I P+ YTFPF   + +          +
Sbjct: 100 FMYNSLIRGYASSGLCNEAIL---LFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQI 156

Query: 159 HAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGK 218
           H  ++K+G+  D++V NSL+  YA    L S  R++FDEM+ R+VVSWT MI G+     
Sbjct: 157 HGLIVKMGYAKDLFVQNSLVHFYAECGELDS-ARKVFDEMSERNVVSWTSMICGYARRDF 215

Query: 219 FDDAL-LAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGT 277
             DA+ L F  ++   V PN VTMV  ++ACA    +E G  ++ FIR +G E++ ++ +
Sbjct: 216 AKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVS 275

Query: 278 ALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRA 337
           AL+DMY KC  ++   R+F      N+   NA+           EA+ +FN M   GVR 
Sbjct: 276 ALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRP 335

Query: 338 DEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFE 397
           D +++L+ +S+C+    +  G+   G+++   +    N+ +   ++D+  +      AF 
Sbjct: 336 DRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICN--ALIDMYMKCHRQDTAFR 393

Query: 398 VMRCMPFDPTKAMWGSLLVSSKSQGDLE 425
           +   M  + T   W S++      G+++
Sbjct: 394 IFDRMS-NKTVVTWNSIVAGYVENGEVD 420



 Score =  117 bits (293), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 149/312 (47%), Gaps = 38/312 (12%)

Query: 121 LSIFAHMHRNT-ILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLG-HLHDIYVHNSLL 178
           + +F  M R+  + PN  T   +  + +        + V+A +   G  ++D+ V ++L+
Sbjct: 220 VDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMV-SALV 278

Query: 179 GVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNR 238
            +Y     +  + ++LFDE    ++     M   +   G   +AL  F  M  +GV P+R
Sbjct: 279 DMYMKCNAI-DVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDR 337

Query: 239 VTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFS- 297
           ++M++A+++C+    +  G   H ++ RNG+E    +  ALIDMY KC R +   R+F  
Sbjct: 338 ISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDR 397

Query: 298 ------------------------------SVKEKNVFTWNAVIKGLALAKSGEEAIRLF 327
                                         ++ EKN+ +WN +I GL      EEAI +F
Sbjct: 398 MSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVF 457

Query: 328 NRME-QDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLL 386
             M+ Q+GV AD VT++++ SAC H G +D+ + I+ ++   K G   +V+    +VD+ 
Sbjct: 458 CSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYI--EKNGIQLDVRLGTTLVDMF 515

Query: 387 ARSGSLREAFEV 398
           +R G    A  +
Sbjct: 516 SRCGDPESAMSI 527


>AT3G29230.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:11188803-11190605 FORWARD
           LENGTH=600
          Length = 600

 Score =  235 bits (600), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 113/304 (37%), Positives = 189/304 (62%), Gaps = 3/304 (0%)

Query: 188 FSLCRQLFDEMT--HRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNAL 245
             + R +FD+M    ++VV+WT++I G+   G   +A    +QM  +G+  +   +++ L
Sbjct: 263 MEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISIL 322

Query: 246 AACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVF 305
           AAC +SG + +G  IH  ++R+    +  +  AL+DMYAKCG +++   VF+ + +K++ 
Sbjct: 323 AACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLV 382

Query: 306 TWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFL 365
           +WN ++ GL +   G+EAI LF+RM ++G+R D+VT +AVL +CNH+GL+D G   F + 
Sbjct: 383 SWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYF-YS 441

Query: 366 VEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLE 425
           +E  Y  +P V+HY C+VDLL R G L+EA +V++ MP +P   +WG+LL + +   +++
Sbjct: 442 MEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVD 501

Query: 426 FSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVE 485
            ++ V   LV+L+P +   Y  LSN+YA    W+ V  +R  MK   + K  G SSVE+E
Sbjct: 502 IAKEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVELE 561

Query: 486 EQGH 489
           +  H
Sbjct: 562 DGIH 565


>AT5G15340.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:4982273-4984144 REVERSE
           LENGTH=623
          Length = 623

 Score =  235 bits (600), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 147/427 (34%), Positives = 226/427 (52%), Gaps = 44/427 (10%)

Query: 101 FNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHA 160
           + +L+ +FS      NS+    +F  M R  +  +  +   LF   +       AQ  H 
Sbjct: 79  WTTLLSSFSRYGLLVNSM---KLFVEMRRKRVEIDDVSVVCLFGVCAKLEDLGFAQQGHG 135

Query: 161 HVLKLGHLHDIYVHNSLLGVYAAS------PRLFSLC----------------------- 191
             +K+G L  + V N+L+ +Y          R+F                          
Sbjct: 136 VAVKMGVLTSVKVCNALMDMYGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVVKWEGLER 195

Query: 192 -RQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQY-AGVAPNRVTMVNALAACA 249
            R++F EM  R+ V+WTVM+ G+  AG   + L    +M +  G   N VT+ + L+ACA
Sbjct: 196 GREVFHEMPERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACA 255

Query: 250 DSGAVEMGAWIHDFIRRN----GWEL---DVVLGTALIDMYAKCGRVEEGVRVFSSVKEK 302
            SG + +G W+H +  +     G E    DV++GTAL+DMYAKCG ++  + VF  ++++
Sbjct: 256 QSGNLVVGRWVHVYALKKEMMMGEEASYDDVMVGTALVDMYAKCGNIDSSMNVFRLMRKR 315

Query: 303 NVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIF 362
           NV TWNA+  GLA+   G   I +F +M ++ V+ D++T  AVLSAC+HSG+VD G + F
Sbjct: 316 NVVTWNALFSGLAMHGKGRMVIDMFPQMIRE-VKPDDLTFTAVLSACSHSGIVDEGWRCF 374

Query: 363 GFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQG 422
             L    YG  P V HYACMVDLL R+G + EA  +MR MP  P + + GSLL S    G
Sbjct: 375 HSL--RFYGLEPKVDHYACMVDLLGRAGLIEEAEILMREMPVPPNEVVLGSLLGSCSVHG 432

Query: 423 DLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSV 482
            +E +E + R+L+++ P N+ Y + +SN+Y   GR D  + +RG ++ R + K  G SS+
Sbjct: 433 KVEIAERIKRELIQMSPGNTEYQILMSNMYVAEGRSDIADGLRGSLRKRGIRKIPGLSSI 492

Query: 483 EVEEQGH 489
            V +  H
Sbjct: 493 YVNDSVH 499



 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 122/273 (44%), Gaps = 46/273 (16%)

Query: 172 YVHNSLLGVYAASPRLFSLCRQLFDE--MTHRDVVSWTVMIMGFRNAGKFDDALLAFEQM 229
           Y+ N+L   YA+S  + +  ++LFDE  ++ +D V WT ++  F   G   +++  F +M
Sbjct: 44  YLSNALFQFYASSGEMVT-AQKLFDEIPLSEKDNVDWTTLLSSFSRYGLLVNSMKLFVEM 102

Query: 230 QYAGVAPNRVTMVNALAACA---DSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKC 286
           +   V  + V++V     CA   D G  + G   H    + G    V +  AL+DMY KC
Sbjct: 103 RRKRVEIDDVSVVCLFGVCAKLEDLGFAQQG---HGVAVKMGVLTSVKVCNALMDMYGKC 159

Query: 287 GRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRA--------- 337
           G V E  R+F  ++EK+V +W  V+  +   +  E    +F+ M +    A         
Sbjct: 160 GLVSEVKRIFEELEEKSVVSWTVVLDTVVKWEGLERGREVFHEMPERNAVAWTVMVAGYL 219

Query: 338 -----------------------DEVTLLAVLSACNHSGLVDMGRQIFGFLVE-----GK 369
                                  + VTL ++LSAC  SG + +GR +  + ++     G+
Sbjct: 220 GAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVVGRWVHVYALKKEMMMGE 279

Query: 370 YGFIPNVKHYACMVDLLARSGSLREAFEVMRCM 402
                +V     +VD+ A+ G++  +  V R M
Sbjct: 280 EASYDDVMVGTALVDMYAKCGNIDSSMNVFRLM 312


>AT5G08510.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:2753099-2754731 FORWARD
           LENGTH=511
          Length = 511

 Score =  234 bits (596), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 133/418 (31%), Positives = 227/418 (54%), Gaps = 42/418 (10%)

Query: 98  VFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQS 157
            F++N LI+A+   H  H S+   ++ +    + + P+H+TF F+F + ++       + 
Sbjct: 47  TFLYNKLIQAYYVHHQPHESIVLYNLLSF---DGLRPSHHTFNFIFAASASFSSARPLRL 103

Query: 158 VHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLC--RQLFDEMTHRDV------------ 203
           +H+   + G   D +   +L+  YA   +L +LC  R++FDEM+ RDV            
Sbjct: 104 LHSQFFRSGFESDSFCCTTLITAYA---KLGALCCARRVFDEMSKRDVPVWNAMITGYQR 160

Query: 204 -------------------VSWTVMIMGFRNAGKFDDALLAFEQMQY-AGVAPNRVTMVN 243
                               SWT +I GF   G + +AL  F  M+    V PN +T+V+
Sbjct: 161 RGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVS 220

Query: 244 ALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSV-KEK 302
            L ACA+ G +E+G  +  + R NG+  ++ +  A I+MY+KCG ++   R+F  +  ++
Sbjct: 221 VLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQR 280

Query: 303 NVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIF 362
           N+ +WN++I  LA     +EA+ LF +M ++G + D VT + +L AC H G+V  G+++F
Sbjct: 281 NLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQELF 340

Query: 363 GFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQG 422
             + E  +   P ++HY CM+DLL R G L+EA+++++ MP  P   +WG+LL +    G
Sbjct: 341 KSM-EEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWGTLLGACSFHG 399

Query: 423 DLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCS 480
           ++E +E  +  L +LEP N    V +SN+YA   +WD V ++R +MK   +TK  G S
Sbjct: 400 NVEIAEIASEALFKLEPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKETMTKAAGYS 457



 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 139/326 (42%), Gaps = 40/326 (12%)

Query: 156 QSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRN 215
           + +HAH L+ G    +     LL      P L    R+LFD   +     +  +I  +  
Sbjct: 5   KQLHAHCLRTG----VDETKDLLQRLLLIPNLV-YARKLFDHHQNSCTFLYNKLIQAYYV 59

Query: 216 AGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVL 275
             +  ++++ +  + + G+ P+  T     AA A   +      +H    R+G+E D   
Sbjct: 60  HHQPHESIVLYNLLSFDGLRPSHHTFNFIFAASASFSSARPLRLLHSQFFRSGFESDSFC 119

Query: 276 GTALIDMYAK-----CGR--------------------------VEEGVRVFSSVKEKNV 304
            T LI  YAK     C R                          ++  + +F S+  KNV
Sbjct: 120 CTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGDMKAAMELFDSMPRKNV 179

Query: 305 FTWNAVIKGLALAKSGEEAIRLFNRMEQD-GVRADEVTLLAVLSACNHSGLVDMGRQIFG 363
            +W  VI G +   +  EA+++F  ME+D  V+ + +T+++VL AC + G +++GR++ G
Sbjct: 180 TSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACANLGELEIGRRLEG 239

Query: 364 FLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGD 423
           +  E   GF  N+      +++ ++ G +  A  +   +        W S++ S  + G 
Sbjct: 240 YAREN--GFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLATHGK 297

Query: 424 -LEFSEFVARKLVELEPANSAYYVHL 448
             E     A+ L E E  ++  +V L
Sbjct: 298 HDEALTLFAQMLREGEKPDAVTFVGL 323


>AT4G39952.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:18527680-18530007 FORWARD
           LENGTH=775
          Length = 775

 Score =  233 bits (594), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 120/328 (36%), Positives = 191/328 (58%), Gaps = 4/328 (1%)

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFR 214
            +S+H +V+K      I V NSL+ +Y     L    R   +  T  +V++W  MI  + 
Sbjct: 452 GKSLHCYVVKTSLDLTISVVNSLIDLYGKMGDLTVAWRMFCEADT--NVITWNAMIASYV 509

Query: 215 NAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVV 274
           +  + + A+  F++M      P+ +T+V  L AC ++G++E G  IH +I     E+++ 
Sbjct: 510 HCEQSEKAIALFDRMVSENFKPSSITLVTLLMACVNTGSLERGQMIHRYITETEHEMNLS 569

Query: 275 LGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDG 334
           L  ALIDMYAKCG +E+   +F +  +K+   WN +I G  +    E AI LF++ME+  
Sbjct: 570 LSAALIDMYAKCGHLEKSRELFDAGNQKDAVCWNVMISGYGMHGDVESAIALFDQMEESD 629

Query: 335 VRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLRE 394
           V+    T LA+LSAC H+GLV+ G+++  FL   +Y   PN+KHY+C+VDLL+RSG+L E
Sbjct: 630 VKPTGPTFLALLSACTHAGLVEQGKKL--FLKMHQYDVKPNLKHYSCLVDLLSRSGNLEE 687

Query: 395 AFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAE 454
           A   +  MPF P   +WG+LL S  + G+ E    +A + V  +P N  YY+ L+N+Y+ 
Sbjct: 688 AESTVMSMPFSPDGVIWGTLLSSCMTHGEFEMGIRMAERAVASDPQNDGYYIMLANMYSA 747

Query: 455 MGRWDDVEKVRGMMKDRQLTKDLGCSSV 482
            G+W++ E+ R MM++  + K  G S V
Sbjct: 748 AGKWEEAERAREMMRESGVGKRAGHSVV 775



 Score =  115 bits (287), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 159/345 (46%), Gaps = 16/345 (4%)

Query: 30  SGFSDRAVTLLKDFCHSRLHVQQIQ---AQLILHNLQSNPTIAHHFITVCQSHXXXXXXX 86
           + + DR ++++   C   L ++ ++   A +I   L  N  +A   I+   S+       
Sbjct: 22  ASYVDRHISVI--LCDQSLSLESLRKHNALIITGGLSENIFVASKLISSYASYGKPNLSS 79

Query: 87  XXXXXXVPRPHVFIFNSLIRA-FSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKS 145
                 V R  +F++NS+I+A FS+  +  +    L  F  M  +   P+H+T P +  +
Sbjct: 80  RVFHL-VTRRDIFLWNSIIKAHFSNGDYARS----LCFFFSMLLSGQSPDHFTAPMVVSA 134

Query: 146 LSAPCHFAQAQSVHAHVLKLGHL-HDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVV 204
            +    F     VH  VLK G    +  V  S +  Y+    L   C  +FDEM  RDVV
Sbjct: 135 CAELLWFHVGTFVHGLVLKHGGFDRNTAVGASFVYFYSKCGFLQDACL-VFDEMPDRDVV 193

Query: 205 SWTVMIMGFRNAGKFDDALLAFEQMQYAGV---APNRVTMVNALAACADSGAVEMGAWIH 261
           +WT +I G    G+ +  L    +M  AG     PN  T+     AC++ GA++ G  +H
Sbjct: 194 AWTAIISGHVQNGESEGGLGYLCKMHSAGSDVDKPNPRTLECGFQACSNLGALKEGRCLH 253

Query: 262 DFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGE 321
            F  +NG      + +++   Y+K G   E    F  + ++++F+W ++I  LA +   E
Sbjct: 254 GFAVKNGLASSKFVQSSMFSFYSKSGNPSEAYLSFRELGDEDMFSWTSIIASLARSGDME 313

Query: 322 EAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLV 366
           E+  +F  M+  G+  D V +  +++      LV  G+   GF++
Sbjct: 314 ESFDMFWEMQNKGMHPDGVVISCLINELGKMMLVPQGKAFHGFVI 358



 Score =  102 bits (255), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 91/390 (23%), Positives = 164/390 (42%), Gaps = 42/390 (10%)

Query: 134 PNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQ 193
           PN  T    F++ S      + + +H   +K G     +V +S+   Y+ S    S    
Sbjct: 228 PNPRTLECGFQACSNLGALKEGRCLHGFAVKNGLASSKFVQSSMFSFYSKSGNP-SEAYL 286

Query: 194 LFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGA 253
            F E+   D+ SWT +I     +G  +++   F +MQ  G+ P+ V +   +        
Sbjct: 287 SFRELGDEDMFSWTSIIASLARSGDMEESFDMFWEMQNKGMHPDGVVISCLINELGKMML 346

Query: 254 VEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEK-NVFTWNAVIK 312
           V  G   H F+ R+ + LD  +  +L+ MY K   +    ++F  + E+ N   WN ++K
Sbjct: 347 VPQGKAFHGFVIRHCFSLDSTVCNSLLSMYCKFELLSVAEKLFCRISEEGNKEAWNTMLK 406

Query: 313 GLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGF 372
           G    K   + I LF +++  G+  D  +  +V+S+C+H G V +G+ +  ++V+     
Sbjct: 407 GYGKMKCHVKCIELFRKIQNLGIEIDSASATSVISSCSHIGAVLLGKSLHCYVVKTSLDL 466

Query: 373 IPNVKHYACMVDLLARSGSLREA---------------------------------FEVM 399
             +V +   ++DL  + G L  A                                 F+ M
Sbjct: 467 TISVVN--SLIDLYGKMGDLTVAWRMFCEADTNVITWNAMIASYVHCEQSEKAIALFDRM 524

Query: 400 RCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELE-PANSAYYVHLSNLYAEMGRW 458
               F P+     +LL++  + G LE  + + R + E E   N +    L ++YA+ G  
Sbjct: 525 VSENFKPSSITLVTLLMACVNTGSLERGQMIHRYITETEHEMNLSLSAALIDMYAKCGH- 583

Query: 459 DDVEKVRGMMKDRQLTKDLGCSSVEVEEQG 488
             +EK R +  D    KD  C +V +   G
Sbjct: 584 --LEKSRELF-DAGNQKDAVCWNVMISGYG 610


>AT5G16860.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:5543834-5546386 FORWARD
           LENGTH=850
          Length = 850

 Score =  232 bits (592), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 130/375 (34%), Positives = 198/375 (52%), Gaps = 14/375 (3%)

Query: 121 LSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKL-------GHLHDIYV 173
           L +   M  + I PN  T   +    ++       + +H + +K        GH  +  V
Sbjct: 350 LGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMV 409

Query: 174 HNSLLGVYAASPRLFSLCRQLFDEMT--HRDVVSWTVMIMGFRNAGKFDDALLAFEQM-- 229
            N L+ +YA   ++    R +FD ++   RDVV+WTVMI G+   G  + AL    +M  
Sbjct: 410 INQLIDMYAKCKKV-DTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFE 468

Query: 230 QYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWE-LDVVLGTALIDMYAKCGR 288
           +     PN  T+  AL ACA   A+ +G  IH +  RN    + + +   LIDMYAKCG 
Sbjct: 469 EDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGS 528

Query: 289 VEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSA 348
           + +   VF ++  KN  TW +++ G  +   GEEA+ +F+ M + G + D VTLL VL A
Sbjct: 529 ISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYA 588

Query: 349 CNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTK 408
           C+HSG++D G + F  + +  +G  P  +HYAC+VDLL R+G L  A  ++  MP +P  
Sbjct: 589 CSHSGMIDQGMEYFNRM-KTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPP 647

Query: 409 AMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMM 468
            +W + L   +  G +E  E+ A K+ EL   +   Y  LSNLYA  GRW DV ++R +M
Sbjct: 648 VVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLM 707

Query: 469 KDRQLTKDLGCSSVE 483
           + + + K  GCS VE
Sbjct: 708 RHKGVKKRPGCSWVE 722



 Score =  157 bits (398), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 90/258 (34%), Positives = 145/258 (56%), Gaps = 5/258 (1%)

Query: 98  VFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQS 157
           V+ +NSLIR++  +   +  L    +F  MH  +  P++YTFPF+FK+          +S
Sbjct: 92  VYHWNSLIRSYGDNGCANKCLY---LFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGES 148

Query: 158 VHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAG 217
            HA  L  G + +++V N+L+ +Y+   R  S  R++FDEM+  DVVSW  +I  +   G
Sbjct: 149 AHALSLVTGFISNVFVGNALVAMYSRC-RSLSDARKVFDEMSVWDVVSWNSIIESYAKLG 207

Query: 218 KFDDALLAFEQMQYA-GVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLG 276
           K   AL  F +M    G  P+ +T+VN L  CA  G   +G  +H F   +    ++ +G
Sbjct: 208 KPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVG 267

Query: 277 TALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVR 336
             L+DMYAKCG ++E   VFS++  K+V +WNA++ G +     E+A+RLF +M+++ ++
Sbjct: 268 NCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIK 327

Query: 337 ADEVTLLAVLSACNHSGL 354
            D VT  A +S     GL
Sbjct: 328 MDVVTWSAAISGYAQRGL 345



 Score =  118 bits (296), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 168/372 (45%), Gaps = 53/372 (14%)

Query: 98  VFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRN-TILPNHYTFPFLFKSLSAPCHFAQAQ 156
           V  +NS+I +++           L +F+ M       P++ T   +    ++    +  +
Sbjct: 193 VVSWNSIIESYAKLGKPK---VALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGK 249

Query: 157 SVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNA 216
            +H   +    + +++V N L+ +YA    +      +F  M+ +DVVSW  M+ G+   
Sbjct: 250 QLHCFAVTSEMIQNMFVGNCLVDMYAKCG-MMDEANTVFSNMSVKDVVSWNAMVAGYSQI 308

Query: 217 GKFDDALLAFEQMQ-----------------YA------------------GVAPNRVTM 241
           G+F+DA+  FE+MQ                 YA                  G+ PN VT+
Sbjct: 309 GRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTL 368

Query: 242 VNALAACADSGAVEMGAWIHDF-------IRRNGWELDVVLGTALIDMYAKCGRVEEGVR 294
           ++ L+ CA  GA+  G  IH +       +R+NG   + ++   LIDMYAKC +V+    
Sbjct: 369 ISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARA 428

Query: 295 VFSSV--KEKNVFTWNAVIKGLALAKSGEEAIRLFNRM-EQD-GVRADEVTLLAVLSACN 350
           +F S+  KE++V TW  +I G +      +A+ L + M E+D   R +  T+   L AC 
Sbjct: 429 MFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACA 488

Query: 351 HSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAM 410
               + +G+QI  + +  +   +P +    C++D+ A+ GS+ +A  V   M     +  
Sbjct: 489 SLAALRIGKQIHAYALRNQQNAVP-LFVSNCLIDMYAKCGSISDARLVFDNM-MAKNEVT 546

Query: 411 WGSLLVSSKSQG 422
           W SL+      G
Sbjct: 547 WTSLMTGYGMHG 558



 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 135/303 (44%), Gaps = 14/303 (4%)

Query: 138 TFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRL---FSLCRQL 194
           T PF+ K  +     +Q + +H  +L  G L  + + + L+  Y +   L    SL R+ 
Sbjct: 31  TPPFIHKCKT----ISQVKLIHQKLLSFGIL-TLNLTSHLISTYISVGCLSHAVSLLRRF 85

Query: 195 FDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAV 254
               +   V  W  +I  + + G  +  L  F  M      P+  T      AC +  +V
Sbjct: 86  --PPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSV 143

Query: 255 EMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGL 314
             G   H      G+  +V +G AL+ MY++C  + +  +VF  +   +V +WN++I+  
Sbjct: 144 RCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESY 203

Query: 315 ALAKSGEEAIRLFNRMEQD-GVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFI 373
           A     + A+ +F+RM  + G R D +TL+ VL  C   G   +G+Q+  F V  +   I
Sbjct: 204 AKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSE--MI 261

Query: 374 PNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARK 433
            N+    C+VD+ A+ G + EA  V   M      + W +++      G  E +  +  K
Sbjct: 262 QNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVS-WNAMVAGYSQIGRFEDAVRLFEK 320

Query: 434 LVE 436
           + E
Sbjct: 321 MQE 323


>AT2G03380.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:1028292-1030361 FORWARD
           LENGTH=689
          Length = 689

 Score =  231 bits (590), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 126/388 (32%), Positives = 216/388 (55%), Gaps = 8/388 (2%)

Query: 98  VFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQS 157
           + ++ ++I  ++H+   + +L   S+F  M    I PN  T   +        +    +S
Sbjct: 308 LVMWTAMIVGYTHNGSVNEAL---SLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRS 364

Query: 158 VHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAG 217
           VH   +K+G + D  V N+L+ +YA   +     + +F+  + +D+V+W  +I GF   G
Sbjct: 365 VHGLSIKVG-IWDTNVANALVHMYAKCYQNRD-AKYVFEMESEKDIVAWNSIISGFSQNG 422

Query: 218 KFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGW--ELDVVL 275
              +AL  F +M    V PN VT+ +  +ACA  G++ +G+ +H +  + G+     V +
Sbjct: 423 SIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGFLASSSVHV 482

Query: 276 GTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGV 335
           GTAL+D YAKCG  +    +F +++EKN  TW+A+I G         ++ LF  M +   
Sbjct: 483 GTALLDFYAKCGDPQSARLIFDTIEEKNTITWSAMIGGYGKQGDTIGSLELFEEMLKKQQ 542

Query: 336 RADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREA 395
           + +E T  ++LSAC H+G+V+ G++ F  + +  Y F P+ KHY CMVD+LAR+G L +A
Sbjct: 543 KPNESTFTSILSACGHTGMVNEGKKYFSSMYK-DYNFTPSTKHYTCMVDMLARAGELEQA 601

Query: 396 FEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEM 455
            +++  MP  P    +G+ L         +  E V +K+++L P +++YYV +SNLYA  
Sbjct: 602 LDIIEKMPIQPDVRCFGAFLHGCGMHSRFDLGEIVIKKMLDLHPDDASYYVLVSNLYASD 661

Query: 456 GRWDDVEKVRGMMKDRQLTKDLGCSSVE 483
           GRW+  ++VR +MK R L+K  G S++E
Sbjct: 662 GRWNQAKEVRNLMKQRGLSKIAGHSTME 689



 Score =  119 bits (298), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 160/342 (46%), Gaps = 9/342 (2%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P P  +++  ++R +  +     S+  + ++  + ++    +   F    K+ +     
Sbjct: 102 IPEPDFYLWKVMLRCYCLNKE---SVEVVKLYDLLMKHGFRYDDIVFSKALKACTELQDL 158

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMG 212
              + +H  ++K+    ++ V   LL +YA    + S   ++F+++T R+VV WT MI G
Sbjct: 159 DNGKKIHCQLVKVPSFDNV-VLTGLLDMYAKCGEIKS-AHKVFNDITLRNVVCWTSMIAG 216

Query: 213 FRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELD 272
           +      ++ L+ F +M+   V  N  T    + AC    A+  G W H  + ++G EL 
Sbjct: 217 YVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELS 276

Query: 273 VVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQ 332
             L T+L+DMY KCG +    RVF+     ++  W A+I G     S  EA+ LF +M+ 
Sbjct: 277 SCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKG 336

Query: 333 DGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSL 392
             ++ + VT+ +VLS C     +++GR + G  +  K G I +      +V + A+    
Sbjct: 337 VEIKPNCVTIASVLSGCGLIENLELGRSVHGLSI--KVG-IWDTNVANALVHMYAKCYQN 393

Query: 393 REAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKL 434
           R+A  V   M  +     W S++      G +  + F+  ++
Sbjct: 394 RDAKYVFE-MESEKDIVAWNSIISGFSQNGSIHEALFLFHRM 434



 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 68/140 (48%), Gaps = 7/140 (5%)

Query: 261 HDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSG 320
           H  +  NG   D+ + T L+ +Y   G  ++   VF  + E + + W  +++   L K  
Sbjct: 64  HGVLTGNGLMGDISIATKLVSLYGFFGYTKDARLVFDQIPEPDFYLWKVMLRCYCLNKES 123

Query: 321 EEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYA 380
            E ++L++ + + G R D++     L AC     +D G++I   LV+     +P+  +  
Sbjct: 124 VEVVKLYDLLMKHGFRYDDIVFSKALKACTELQDLDNGKKIHCQLVK-----VPSFDNVV 178

Query: 381 C--MVDLLARSGSLREAFEV 398
              ++D+ A+ G ++ A +V
Sbjct: 179 LTGLLDMYAKCGEIKSAHKV 198


>AT1G56570.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:21195804-21197721 FORWARD
           LENGTH=611
          Length = 611

 Score =  231 bits (590), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 134/393 (34%), Positives = 214/393 (54%), Gaps = 16/393 (4%)

Query: 101 FNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLF----KSLSAPCHFAQAQ 156
           + +LI  F+H       L        M++  +L N    P+      ++ ++       +
Sbjct: 181 WTTLITGFTHLGDGIGGL-------KMYKQMLLENAEVTPYCITIAVRASASIDSVTTGK 233

Query: 157 SVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNA 216
            +HA V+K G   ++ V NS+L +Y     L S  +  F EM  +D+++W  +I     +
Sbjct: 234 QIHASVIKRGFQSNLPVMNSILDLYCRCGYL-SEAKHYFHEMEDKDLITWNTLISELERS 292

Query: 217 GKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLG 276
               +ALL F++ +  G  PN  T  + +AACA+  A+  G  +H  I R G+  +V L 
Sbjct: 293 DS-SEALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIFRRGFNKNVELA 351

Query: 277 TALIDMYAKCGRVEEGVRVFSS-VKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGV 335
            ALIDMYAKCG + +  RVF   V  +N+ +W +++ G      G EA+ LF++M   G+
Sbjct: 352 NALIDMYAKCGNIPDSQRVFGEIVDRRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGI 411

Query: 336 RADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREA 395
           R D +  +AVLSAC H+GLV+ G + F  ++E +YG  P+   Y C+VDLL R+G + EA
Sbjct: 412 RPDRIVFMAVLSACRHAGLVEKGLKYFN-VMESEYGINPDRDIYNCVVDLLGRAGKIGEA 470

Query: 396 FEVMRCMPFDPTKAMWGSLLVSSKS-QGDLEFSEFVARKLVELEPANSAYYVHLSNLYAE 454
           +E++  MPF P ++ WG++L + K+ + +   S   ARK++EL+P     YV LS +YA 
Sbjct: 471 YELVERMPFKPDESTWGAILGACKAHKHNGLISRLAARKVMELKPKMVGTYVMLSYIYAA 530

Query: 455 MGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQ 487
            G+W D  +VR MM+     K+ G S + VE Q
Sbjct: 531 EGKWVDFARVRKMMRMMGNKKEAGMSWILVENQ 563



 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 164/332 (49%), Gaps = 10/332 (3%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P   V  + ++I  ++ S+++  +      F  M +    PN +T   + KS       
Sbjct: 71  MPDRDVVAWTAMITGYASSNYNARAW---ECFHEMVKQGTSPNEFTLSSVLKSCRNMKVL 127

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMG 212
           A    VH  V+KLG    +YV N+++ +YA           +F ++  ++ V+WT +I G
Sbjct: 128 AYGALVHGVVVKLGMEGSLYVDNAMMNMYATCSVTMEAACLIFRDIKVKNDVTWTTLITG 187

Query: 213 FRNAGKFDDALLAFEQM--QYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWE 270
           F + G     L  ++QM  + A V P  +T+  A+ A A   +V  G  IH  + + G++
Sbjct: 188 FTHLGDGIGGLKMYKQMLLENAEVTPYCITI--AVRASASIDSVTTGKQIHASVIKRGFQ 245

Query: 271 LDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRM 330
            ++ +  +++D+Y +CG + E    F  +++K++ TWN +I  L  + S  EA+ +F R 
Sbjct: 246 SNLPVMNSILDLYCRCGYLSEAKHYFHEMEDKDLITWNTLISELERSDS-SEALLMFQRF 304

Query: 331 EQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSG 390
           E  G   +  T  ++++AC +   ++ G+Q+ G +   + GF  NV+    ++D+ A+ G
Sbjct: 305 ESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIF--RRGFNKNVELANALIDMYAKCG 362

Query: 391 SLREAFEVMRCMPFDPTKAMWGSLLVSSKSQG 422
           ++ ++  V   +        W S+++   S G
Sbjct: 363 NIPDSQRVFGEIVDRRNLVSWTSMMIGYGSHG 394



 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 118/257 (45%), Gaps = 14/257 (5%)

Query: 187 LFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALA 246
           L    R LFDEM  RDVV+WT MI G+ ++     A   F +M   G +PN  T+ + L 
Sbjct: 60  LVEEARSLFDEMPDRDVVAWTAMITGYASSNYNARAWECFHEMVKQGTSPNEFTLSSVLK 119

Query: 247 ACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCG-RVEEGVRVFSSVKEKNVF 305
           +C +   +  GA +H  + + G E  + +  A+++MYA C   +E    +F  +K KN  
Sbjct: 120 SCRNMKVLAYGALVHGVVVKLGMEGSLYVDNAMMNMYATCSVTMEAACLIFRDIKVKNDV 179

Query: 306 TWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVD---MGRQIF 362
           TW  +I G      G   ++++ +M  +     EVT   +  A   S  +D    G+QI 
Sbjct: 180 TWTTLITGFTHLGDGIGGLKMYKQMLLENA---EVTPYCITIAVRASASIDSVTTGKQIH 236

Query: 363 GFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLV----SS 418
             ++  K GF  N+     ++DL  R G L EA      M  D     W +L+     S 
Sbjct: 237 ASVI--KRGFQSNLPVMNSILDLYCRCGYLSEAKHYFHEME-DKDLITWNTLISELERSD 293

Query: 419 KSQGDLEFSEFVARKLV 435
            S+  L F  F ++  V
Sbjct: 294 SSEALLMFQRFESQGFV 310



 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 118/264 (44%), Gaps = 9/264 (3%)

Query: 51  QQIQAQLILHNLQSNPTIAHHFITV-CQSHXXXXXXXXXXXXXVPRPHVFIFNSLIRAFS 109
           +QI A +I    QSN  + +  + + C+               +    +  +N+LI    
Sbjct: 233 KQIHASVIKRGFQSNLPVMNSILDLYCRC--GYLSEAKHYFHEMEDKDLITWNTLISELE 290

Query: 110 HSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLH 169
            S    +S   L +F        +PN YTF  L  + +        Q +H  + + G   
Sbjct: 291 RS----DSSEALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIFRRGFNK 346

Query: 170 DIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQM 229
           ++ + N+L+ +YA    +    R   + +  R++VSWT M++G+ + G   +A+  F++M
Sbjct: 347 NVELANALIDMYAKCGNIPDSQRVFGEIVDRRNLVSWTSMMIGYGSHGYGAEAVELFDKM 406

Query: 230 QYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRN-GWELDVVLGTALIDMYAKCGR 288
             +G+ P+R+  +  L+AC  +G VE G    + +    G   D  +   ++D+  + G+
Sbjct: 407 VSSGIRPDRIVFMAVLSACRHAGLVEKGLKYFNVMESEYGINPDRDIYNCVVDLLGRAGK 466

Query: 289 VEEGVRVFSSVKEK-NVFTWNAVI 311
           + E   +   +  K +  TW A++
Sbjct: 467 IGEAYELVERMPFKPDESTWGAIL 490


>AT2G37320.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:15667223-15668725 FORWARD
           LENGTH=500
          Length = 500

 Score =  231 bits (589), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 125/334 (37%), Positives = 187/334 (55%), Gaps = 4/334 (1%)

Query: 152 FAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIM 211
           F      H   LK G + D+Y+ +SL+ +Y  S  + +   ++F+EM  R+VVSWT MI 
Sbjct: 136 FRTGSGFHCLALKGGFISDVYLGSSLVVLYRDSGEVEN-AYKVFEEMPERNVVSWTAMIS 194

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
           GF    + D  L  + +M+ +   PN  T    L+AC  SGA+  G  +H      G + 
Sbjct: 195 GFAQEWRVDICLKLYSKMRKSTSDPNDYTFTALLSACTGSGALGQGRSVHCQTLHMGLKS 254

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFN-RM 330
            + +  +LI MY KCG +++  R+F     K+V +WN++I G A      +AI LF   M
Sbjct: 255 YLHISNSLISMYCKCGDLKDAFRIFDQFSNKDVVSWNSMIAGYAQHGLAMQAIELFELMM 314

Query: 331 EQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSG 390
            + G + D +T L VLS+C H+GLV  GR+ F  + E  +G  P + HY+C+VDLL R G
Sbjct: 315 PKSGTKPDAITYLGVLSSCRHAGLVKEGRKFFNLMAE--HGLKPELNHYSCLVDLLGRFG 372

Query: 391 SLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSN 450
            L+EA E++  MP  P   +WGSLL S +  GD+      A + + LEP  +A +V L+N
Sbjct: 373 LLQEALELIENMPMKPNSVIWGSLLFSCRVHGDVWTGIRAAEERLMLEPDCAATHVQLAN 432

Query: 451 LYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEV 484
           LYA +G W +   VR +MKD+ L  + GCS +E+
Sbjct: 433 LYASVGYWKEAATVRKLMKDKGLKTNPGCSWIEI 466



 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 110/221 (49%), Gaps = 6/221 (2%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P  +V  + ++I  F+           L +++ M ++T  PN YTF  L  + +     
Sbjct: 181 MPERNVVSWTAMISGFAQEWRVD---ICLKLYSKMRKSTSDPNDYTFTALLSACTGSGAL 237

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMG 212
            Q +SVH   L +G    +++ NSL+ +Y     L    R +FD+ +++DVVSW  MI G
Sbjct: 238 GQGRSVHCQTLHMGLKSYLHISNSLISMYCKCGDLKDAFR-IFDQFSNKDVVSWNSMIAG 296

Query: 213 FRNAGKFDDALLAFE-QMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
           +   G    A+  FE  M  +G  P+ +T +  L++C  +G V+ G    + +  +G + 
Sbjct: 297 YAQHGLAMQAIELFELMMPKSGTKPDAITYLGVLSSCRHAGLVKEGRKFFNLMAEHGLKP 356

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEK-NVFTWNAVI 311
           ++   + L+D+  + G ++E + +  ++  K N   W +++
Sbjct: 357 ELNHYSCLVDLLGRFGLLQEALELIENMPMKPNSVIWGSLL 397



 Score = 72.8 bits (177), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 79/158 (50%), Gaps = 2/158 (1%)

Query: 241 MVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVK 300
           + +A+ +C  +     G+  H    + G+  DV LG++L+ +Y   G VE   +VF  + 
Sbjct: 123 LSSAVRSCGLNRDFRTGSGFHCLALKGGFISDVYLGSSLVVLYRDSGEVENAYKVFEEMP 182

Query: 301 EKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQ 360
           E+NV +W A+I G A     +  ++L+++M +     ++ T  A+LSAC  SG +  GR 
Sbjct: 183 ERNVVSWTAMISGFAQEWRVDICLKLYSKMRKSTSDPNDYTFTALLSACTGSGALGQGRS 242

Query: 361 IFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEV 398
           +    +    G    +     ++ +  + G L++AF +
Sbjct: 243 VHCQTLH--MGLKSYLHISNSLISMYCKCGDLKDAFRI 278


>AT3G16610.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr3:5656371-5658335 REVERSE LENGTH=654
          Length = 654

 Score =  231 bits (588), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 118/333 (35%), Positives = 197/333 (59%), Gaps = 2/333 (0%)

Query: 152 FAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIM 211
            +  + VH + +K G + D+ V N+++  YA    L    RQ F E+  +DV+S+  +I 
Sbjct: 324 LSGGRCVHCYAVKAGFILDLTVQNTIISFYAKYGSLCDAFRQ-FSEIGLKDVISYNSLIT 382

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
           G     + +++   F +M+ +G+ P+  T++  L AC+   A+  G+  H +   +G+ +
Sbjct: 383 GCVVNCRPEESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHGSSCHGYCVVHGYAV 442

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRME 331
           +  +  AL+DMY KCG+++   RVF ++ ++++ +WN ++ G  +   G+EA+ LFN M+
Sbjct: 443 NTSICNALMDMYTKCGKLDVAKRVFDTMHKRDIVSWNTMLFGFGIHGLGKEALSLFNSMQ 502

Query: 332 QDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGS 391
           + GV  DEVTLLA+LSAC+HSGLVD G+Q+F  +  G +  IP + HY CM DLLAR+G 
Sbjct: 503 ETGVNPDEVTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRIDHYNCMTDLLARAGY 562

Query: 392 LREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNL 451
           L EA++ +  MPF+P   + G+LL +  +  + E    V++K+  L     +  V LSN 
Sbjct: 563 LDEAYDFVNKMPFEPDIRVLGTLLSACWTYKNAELGNEVSKKMQSLGETTES-LVLLSNT 621

Query: 452 YAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEV 484
           Y+   RW+D  ++R + K R L K  G S V+V
Sbjct: 622 YSAAERWEDAARIRMIQKKRGLLKTPGYSWVDV 654



 Score =  129 bits (325), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 154/316 (48%), Gaps = 15/316 (4%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTP-LSIFAHMHR-NTILPNHYTFPFLFKSLSAPC 150
           +P+  +  +N++I  FS     H  LT  + +F  M R + + PN  T   +F +L    
Sbjct: 164 MPKRDMVAWNAMISGFSL----HCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPALGRAG 219

Query: 151 HFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMI 210
              + ++VH +  ++G  +D+ V   +L VYA S +     R++FD    ++ V+W+ MI
Sbjct: 220 ALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKS-KCIIYARRVFDLDFKKNEVTWSAMI 278

Query: 211 MGFRNAGKFDDALLAFEQM----QYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRR 266
            G+       +A   F QM      A V P  + ++  L  CA  G +  G  +H +  +
Sbjct: 279 GGYVENEMIKEAGEVFFQMLVNDNVAMVTPVAIGLI--LMGCARFGDLSGGRCVHCYAVK 336

Query: 267 NGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRL 326
            G+ LD+ +   +I  YAK G + +  R FS +  K+V ++N++I G  +    EE+ RL
Sbjct: 337 AGFILDLTVQNTIISFYAKYGSLCDAFRQFSEIGLKDVISYNSLITGCVVNCRPEESFRL 396

Query: 327 FNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLL 386
           F+ M   G+R D  TLL VL+AC+H   +  G    G+ V   +G+  N      ++D+ 
Sbjct: 397 FHEMRTSGIRPDITTLLGVLTACSHLAALGHGSSCHGYCV--VHGYAVNTSICNALMDMY 454

Query: 387 ARSGSLREAFEVMRCM 402
            + G L  A  V   M
Sbjct: 455 TKCGKLDVAKRVFDTM 470



 Score =  126 bits (316), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 150/307 (48%), Gaps = 9/307 (2%)

Query: 94  PRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFA 153
           PR +   ++ +IRA++ +     +L    ++  M  + + P  YT+PF+ K+ +      
Sbjct: 64  PRINPIAWDLMIRAYASNDFAEKAL---DLYYKMLNSGVRPTKYTYPFVLKACAGLRAID 120

Query: 154 QAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGF 213
             + +H+HV       D+YV  +L+  YA    L  +  ++FDEM  RD+V+W  MI GF
Sbjct: 121 DGKLIHSHVNCSDFATDMYVCTALVDFYAKCGEL-EMAIKVFDEMPKRDMVAWNAMISGF 179

Query: 214 RNAGKFDDALLAFEQM-QYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELD 272
                  D +  F  M +  G++PN  T+V    A   +GA+  G  +H +  R G+  D
Sbjct: 180 SLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPALGRAGALREGKAVHGYCTRMGFSND 239

Query: 273 VVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRM-- 330
           +V+ T ++D+YAK   +    RVF    +KN  TW+A+I G    +  +EA  +F +M  
Sbjct: 240 LVVKTGILDVYAKSKCIIYARRVFDLDFKKNEVTWSAMIGGYVENEMIKEAGEVFFQMLV 299

Query: 331 EQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSG 390
             +      V +  +L  C   G +  GR +  + V  K GFI ++     ++   A+ G
Sbjct: 300 NDNVAMVTPVAIGLILMGCARFGDLSGGRCVHCYAV--KAGFILDLTVQNTIISFYAKYG 357

Query: 391 SLREAFE 397
           SL +AF 
Sbjct: 358 SLCDAFR 364



 Score =  108 bits (269), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 150/312 (48%), Gaps = 18/312 (5%)

Query: 142 LFKSLSAPC----HFAQAQSVHAHVLKLG-HLHDIYVHNSLLGVYAASPRLFSLCRQLFD 196
           +F SL   C    +    Q +H H+LK    L    V  +L  +YA+   +  L R +FD
Sbjct: 1   MFLSLLETCIRSRNLVLGQVIHQHLLKRSLTLSSSTVLVNLTRLYASCNEV-ELARHVFD 59

Query: 197 EMTHRDV--VSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAV 254
           E+ H  +  ++W +MI  + +    + AL  + +M  +GV P + T    L ACA   A+
Sbjct: 60  EIPHPRINPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGLRAI 119

Query: 255 EMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGL 314
           + G  IH  +  + +  D+ + TAL+D YAKCG +E  ++VF  + ++++  WNA+I G 
Sbjct: 120 DDGKLIHSHVNCSDFATDMYVCTALVDFYAKCGELEMAIKVFDEMPKRDMVAWNAMISGF 179

Query: 315 ALAKSGEEAIRLFNRMEQ-DGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFI 373
           +L     + I LF  M + DG+  +  T++ +  A   +G +  G+ + G+    + GF 
Sbjct: 180 SLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPALGRAGALREGKAVHGYCT--RMGFS 237

Query: 374 PNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSS------KSQGDLEFS 427
            ++     ++D+ A+S  +  A  V   + F   +  W +++         K  G++ F 
Sbjct: 238 NDLVVKTGILDVYAKSKCIIYARRVFD-LDFKKNEVTWSAMIGGYVENEMIKEAGEVFFQ 296

Query: 428 EFVARKLVELEP 439
             V   +  + P
Sbjct: 297 MLVNDNVAMVTP 308


>AT3G24000.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:8672774-8674881 FORWARD
           LENGTH=665
          Length = 665

 Score =  230 bits (587), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 123/397 (30%), Positives = 207/397 (52%), Gaps = 6/397 (1%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P+     + +LI  +S    H      L  F  M R    PN +T   + K+ +A    
Sbjct: 121 MPQRDFVTWTTLISGYSQ---HDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRG 177

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMG 212
                +H   +K G   +++V ++LL +Y     L    + +FD +  R+ VSW  +I G
Sbjct: 178 CCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYG-LMDDAQLVFDALESRNDVSWNALIAG 236

Query: 213 FRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELD 272
                  + AL  F+ M   G  P+  +  +   AC+ +G +E G W+H ++ ++G +L 
Sbjct: 237 HARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLV 296

Query: 273 VVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQ 332
              G  L+DMYAK G + +  ++F  + +++V +WN+++   A    G+EA+  F  M +
Sbjct: 297 AFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRR 356

Query: 333 DGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSL 392
            G+R +E++ L+VL+AC+HSGL+D G   +  +   K G +P   HY  +VDLL R+G L
Sbjct: 357 VGIRPNEISFLSVLTACSHSGLLDEGWHYYELM--KKDGIVPEAWHYVTVVDLLGRAGDL 414

Query: 393 REAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLY 452
             A   +  MP +PT A+W +LL + +   + E   + A  + EL+P +   +V L N+Y
Sbjct: 415 NRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIY 474

Query: 453 AEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
           A  GRW+D  +VR  MK+  + K+  CS VE+E   H
Sbjct: 475 ASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIH 511



 Score =  143 bits (360), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 88/294 (29%), Positives = 153/294 (52%), Gaps = 16/294 (5%)

Query: 130 NTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFS 189
           NT+L     F  L           Q + VHAH+L+    HDI + N+LL +YA    L  
Sbjct: 64  NTLLKKCTVFKLLI----------QGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSL-E 112

Query: 190 LCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACA 249
             R++F++M  RD V+WT +I G+    +  DALL F QM   G +PN  T+ + + A A
Sbjct: 113 EARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAA 172

Query: 250 DSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNA 309
                  G  +H F  + G++ +V +G+AL+D+Y + G +++   VF +++ +N  +WNA
Sbjct: 173 AERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNA 232

Query: 310 VIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGK 369
           +I G A     E+A+ LF  M +DG R    +  ++  AC+ +G ++ G+ +  ++++  
Sbjct: 233 LIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSG 292

Query: 370 YGFIPNVKHYACMVDLLARSGSLREAFEVM-RCMPFDPTKAMWGSLLVSSKSQG 422
              +    +   ++D+ A+SGS+ +A ++  R    D     W SLL +    G
Sbjct: 293 EKLVAFAGN--TLLDMYAKSGSIHDARKIFDRLAKRDVVS--WNSLLTAYAQHG 342


>AT3G03580.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:860695-863343 REVERSE
           LENGTH=882
          Length = 882

 Score =  230 bits (586), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 126/389 (32%), Positives = 209/389 (53%), Gaps = 5/389 (1%)

Query: 101 FNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHA 160
           +NS+I  +  S    + +  + +F  M       +H T+  L    +        + +H+
Sbjct: 376 WNSIISGYIQSG---DLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHS 432

Query: 161 HVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFD 220
           + +K G   D+ V N+L+ +YA    +     ++F  M   D V+W  +I      G F 
Sbjct: 433 NGIKSGICIDLSVSNALIDMYAKCGEVGD-SLKIFSSMGTGDTVTWNTVISACVRFGDFA 491

Query: 221 DALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALI 280
             L    QM+ + V P+  T +  L  CA   A  +G  IH  + R G+E ++ +G ALI
Sbjct: 492 TGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALI 551

Query: 281 DMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEV 340
           +MY+KCG +E   RVF  +  ++V TW  +I    +   GE+A+  F  ME+ G+  D V
Sbjct: 552 EMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSV 611

Query: 341 TLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMR 400
             +A++ AC+HSGLVD G   F  + +  Y   P ++HYAC+VDLL+RS  + +A E ++
Sbjct: 612 VFIAIIYACSHSGLVDEGLACFEKM-KTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQ 670

Query: 401 CMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDD 460
            MP  P  ++W S+L + ++ GD+E +E V+R+++EL P +  Y +  SN YA + +WD 
Sbjct: 671 AMPIKPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDK 730

Query: 461 VEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
           V  +R  +KD+ +TK+ G S +EV +  H
Sbjct: 731 VSLIRKSLKDKHITKNPGYSWIEVGKNVH 759



 Score =  144 bits (363), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/334 (28%), Positives = 175/334 (52%), Gaps = 14/334 (4%)

Query: 94  PRPHVFIFNSLIRAFSHSHHHHNSLTP--LSIFAHMHRNTILPNHYTFPFLFKSLSAPCH 151
           P  +V+++NS+IRAFS      N L P  L  +  +  + + P+ YTFP + K+ +    
Sbjct: 67  PAKNVYLWNSIIRAFSK-----NGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFD 121

Query: 152 FAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIM 211
                 V+  +L +G   D++V N+L+ +Y+    L +  RQ+FDEM  RD+VSW  +I 
Sbjct: 122 AEMGDLVYEQILDMGFESDLFVGNALVDMYSRMG-LLTRARQVFDEMPVRDLVSWNSLIS 180

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
           G+ + G +++AL  + +++ + + P+  T+ + L A  +   V+ G  +H F  ++G   
Sbjct: 181 GYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNS 240

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRME 331
            VV+   L+ MY K  R  +  RVF  +  ++  ++N +I G    +  EE++R+F  +E
Sbjct: 241 VVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMF--LE 298

Query: 332 Q-DGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSG 390
             D  + D +T+ +VL AC H   + + + I+ +++  K GF+        ++D+ A+ G
Sbjct: 299 NLDQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYML--KAGFVLESTVRNILIDVYAKCG 356

Query: 391 SLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDL 424
            +  A +V   M    T + W S++      GDL
Sbjct: 357 DMITARDVFNSMECKDTVS-WNSIISGYIQSGDL 389



 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 160/333 (48%), Gaps = 10/333 (3%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P   +  +NSLI  +S SH ++     L I+  +  + I+P+ +T   +  +       
Sbjct: 167 MPVRDLVSWNSLISGYS-SHGYYEE--ALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVV 223

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMG 212
            Q Q +H   LK G    + V+N L+ +Y    R     R++FDEM  RD VS+  MI G
Sbjct: 224 KQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTD-ARRVFDEMDVRDSVSYNTMICG 282

Query: 213 FRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELD 272
           +      ++++  F +       P+ +T+ + L AC     + +  +I++++ + G+ L+
Sbjct: 283 YLKLEMVEESVRMFLE-NLDQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLE 341

Query: 273 VVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQ 332
             +   LID+YAKCG +     VF+S++ K+  +WN++I G   +    EA++LF  M  
Sbjct: 342 STVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMI 401

Query: 333 DGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEG-KYGFIPNVKHYACMVDLLARSGS 391
              +AD +T L ++S       +  G+   G    G K G   ++     ++D+ A+ G 
Sbjct: 402 MEEQADHITYLMLISVSTRLADLKFGK---GLHSNGIKSGICIDLSVSNALIDMYAKCGE 458

Query: 392 LREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDL 424
           + ++ ++   M    T   W +++ +    GD 
Sbjct: 459 VGDSLKIFSSMGTGDT-VTWNTVISACVRFGDF 490



 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 121/248 (48%), Gaps = 3/248 (1%)

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFR 214
           A+ ++ ++LK G + +  V N L+ VYA    + +  R +F+ M  +D VSW  +I G+ 
Sbjct: 326 AKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMIT-ARDVFNSMECKDTVSWNSIISGYI 384

Query: 215 NAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVV 274
            +G   +A+  F+ M       + +T +  ++       ++ G  +H    ++G  +D+ 
Sbjct: 385 QSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLS 444

Query: 275 LGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDG 334
           +  ALIDMYAKCG V + +++FSS+   +  TWN VI            +++  +M +  
Sbjct: 445 VSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSE 504

Query: 335 VRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLRE 394
           V  D  T L  L  C       +G++I   L+  ++G+   ++    ++++ ++ G L  
Sbjct: 505 VVPDMATFLVTLPMCASLAAKRLGKEIHCCLL--RFGYESELQIGNALIEMYSKCGCLEN 562

Query: 395 AFEVMRCM 402
           +  V   M
Sbjct: 563 SSRVFERM 570



 Score = 99.8 bits (247), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 122/231 (52%), Gaps = 6/231 (2%)

Query: 140 PFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYA---ASPRLFSLCRQLFD 196
           PF+ ++LS+  +  + + +HA V+ LG     +    L+  Y+         S+ R++  
Sbjct: 8   PFISRALSSSSNLNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRV-- 65

Query: 197 EMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEM 256
               ++V  W  +I  F   G F +AL  + +++ + V+P++ T  + + ACA     EM
Sbjct: 66  -SPAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEM 124

Query: 257 GAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLAL 316
           G  +++ I   G+E D+ +G AL+DMY++ G +    +VF  +  +++ +WN++I G + 
Sbjct: 125 GDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSS 184

Query: 317 AKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVE 367
               EEA+ +++ ++   +  D  T+ +VL A  +  +V  G+ + GF ++
Sbjct: 185 HGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALK 235


>AT4G16835.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:9472763-9474803 FORWARD
           LENGTH=656
          Length = 656

 Score =  230 bits (586), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 118/331 (35%), Positives = 194/331 (58%), Gaps = 3/331 (0%)

Query: 160 AHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMT-HRDVVSWTVMIMGFRNAGK 218
           +H  K+  +  +    +++  Y  + ++  L   +F +MT ++++V+W  MI G+    +
Sbjct: 206 SHFFKVAPVRGVVAWTAMITGYMKAKKV-ELAEAMFKDMTVNKNLVTWNAMISGYVENSR 264

Query: 219 FDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTA 278
            +D L  F  M   G+ PN   + +AL  C++  A+++G  IH  + ++    DV   T+
Sbjct: 265 PEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTS 324

Query: 279 LIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRAD 338
           LI MY KCG + +  ++F  +K+K+V  WNA+I G A   + ++A+ LF  M  + +R D
Sbjct: 325 LISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPD 384

Query: 339 EVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEV 398
            +T +AVL ACNH+GLV++G   F  +V   Y   P   HY CMVDLL R+G L EA ++
Sbjct: 385 WITFVAVLLACNHAGLVNIGMAYFESMVR-DYKVEPQPDHYTCMVDLLGRAGKLEEALKL 443

Query: 399 MRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRW 458
           +R MPF P  A++G+LL + +   ++E +EF A KL++L   N+A YV L+N+YA   RW
Sbjct: 444 IRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRW 503

Query: 459 DDVEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
           +DV +VR  MK+  + K  G S +E+  + H
Sbjct: 504 EDVARVRKRMKESNVVKVPGYSWIEIRNKVH 534



 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/295 (21%), Positives = 117/295 (39%), Gaps = 45/295 (15%)

Query: 175 NSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGV 234
           NSLL   +  P       QLFDE+   D  S+ +M+  +     F+ A   F++M +   
Sbjct: 96  NSLLIGISKDPSRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDA 155

Query: 235 APNRVTMVNALAACADSGAVEMGAWI-HDFIRRNGWELDVVLGTALIDMYAKCGRVEEGV 293
           A    TM+   A     G +E    + +  + +N      V   A+I  Y +CG +E+  
Sbjct: 156 ASWN-TMITGYAR---RGEMEKARELFYSMMEKNE-----VSWNAMISGYIECGDLEKAS 206

Query: 294 RVFSSVK--------------------------------EKNVFTWNAVIKGLALAKSGE 321
             F                                     KN+ TWNA+I G       E
Sbjct: 207 HFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPE 266

Query: 322 EAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYAC 381
           + ++LF  M ++G+R +   L + L  C+    + +GRQI   +   K     +V     
Sbjct: 267 DGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIV--SKSTLCNDVTALTS 324

Query: 382 MVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVE 436
           ++ +  + G L +A+++   M      A W +++      G+ + +  + R++++
Sbjct: 325 LISMYCKCGELGDAWKLFEVMKKKDVVA-WNAMISGYAQHGNADKALCLFREMID 378


>AT3G18970.1 | Symbols: MEF20 | mitochondrial editing factor  20 |
           chr3:6543699-6545117 REVERSE LENGTH=472
          Length = 472

 Score =  229 bits (585), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 149/473 (31%), Positives = 243/473 (51%), Gaps = 34/473 (7%)

Query: 35  RAVTLLKDFCHSRLHVQQIQAQLILHNLQSNPTIAHHFITVCQSHXXXXXXXXXXXXXVP 94
           R ++LL+    + +  +QI AQL+++    N          C                 P
Sbjct: 9   RFLSLLQQNSKTLIQAKQIHAQLVINGCHDNSLFGKLIGHYCSKPSTESSSKLAHLLVFP 68

Query: 95  R---PHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILP--NHYTFPFLFKSLSAP 149
           R   P  F+FN+L++              + IFA+    + L   N  TF F+  + +  
Sbjct: 69  RFGHPDKFLFNTLLKCSKPEDS-------IRIFANYASKSSLLYLNERTFVFVLGACARS 121

Query: 150 CHFAQ---AQSVHAHVLKLGHLHDI-YVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVS 205
              +     + VH  V KLG L++   +  +LL  YA +  L    R++FDEM  R  V+
Sbjct: 122 ASSSALRVGRIVHGMVKKLGFLYESELIGTTLLHFYAKNGDL-RYARKVFDEMPERTSVT 180

Query: 206 WTVMIMGF---RNAGKFD--DALLAFEQMQY--AGVAPNRVTMVNALAACADSGAVEMGA 258
           W  MI G+   ++ G  +   A++ F +     +GV P   TMV  L+A + +G +E+G+
Sbjct: 181 WNAMIGGYCSHKDKGNHNARKAMVLFRRFSCCGSGVRPTDTTMVCVLSAISQTGLLEIGS 240

Query: 259 WIHDFIRRNGW--ELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLAL 316
            +H +I + G+  E+DV +GTAL+DMY+KCG +     VF  +K KNVFTW ++  GLAL
Sbjct: 241 LVHGYIEKLGFTPEVDVFIGTALVDMYSKCGCLNNAFSVFELMKVKNVFTWTSMATGLAL 300

Query: 317 AKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNV 376
              G E   L NRM + G++ +E+T  ++LSA  H GLV+ G ++F  + + ++G  P +
Sbjct: 301 NGRGNETPNLLNRMAESGIKPNEITFTSLLSAYRHIGLVEEGIELFKSM-KTRFGVTPVI 359

Query: 377 KHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVE 436
           +HY C+VDLL ++G ++EA++ +  MP  P   +  SL  +    G+    E + + L+E
Sbjct: 360 EHYGCIVDLLGKAGRIQEAYQFILAMPIKPDAILLRSLCNACSIYGETVMGEEIGKALLE 419

Query: 437 LEPANSAY-------YVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSV 482
           +E  +          YV LSN+ A  G+W +VEK+R  MK+R++    G S V
Sbjct: 420 IEREDEKLSGSECEDYVALSNVLAHKGKWVEVEKLRKEMKERRIKTRPGYSFV 472


>AT1G34160.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:12441393-12443225 FORWARD
           LENGTH=581
          Length = 581

 Score =  229 bits (584), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 139/406 (34%), Positives = 224/406 (55%), Gaps = 21/406 (5%)

Query: 93  VPRPHVFIFNSLIRAFSHSHH-------HHNSLTPLSIFAHMHRNTILPNHYTFPFLFKS 145
           +P+P    +N++IR F+ S H       + + L   S  + + R   L   +T     ++
Sbjct: 63  IPKPLTNDWNAIIRGFAGSSHPSLAFSWYRSMLQQSSSSSAICRVDALTCSFTLKACARA 122

Query: 146 LSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVS 205
           L   C  A  Q +H  + + G   D  +  +LL  Y+ +  L S   +LFDEM  RDV S
Sbjct: 123 L---CSSAMDQ-LHCQINRRGLSADSLLCTTLLDAYSKNGDLIS-AYKLFDEMPVRDVAS 177

Query: 206 WTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWI-HDFI 264
           W  +I G  +  +  +A+  +++M+  G+  + VT+V AL AC+  G V+ G  I H + 
Sbjct: 178 WNALIAGLVSGNRASEAMELYKRMETEGIRRSEVTVVAALGACSHLGDVKEGENIFHGYS 237

Query: 265 RRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSS-VKEKNVFTWNAVIKGLALAKSGEEA 323
             N     V++  A IDMY+KCG V++  +VF     +K+V TWN +I G A+      A
Sbjct: 238 NDN-----VIVSNAAIDMYSKCGFVDKAYQVFEQFTGKKSVVTWNTMITGFAVHGEAHRA 292

Query: 324 IRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMV 383
           + +F+++E +G++ D+V+ LA L+AC H+GLV+ G  +F  +     G   N+KHY C+V
Sbjct: 293 LEIFDKLEDNGIKPDDVSYLAALTACRHAGLVEYGLSVFNNM--ACKGVERNMKHYGCVV 350

Query: 384 DLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSA 443
           DLL+R+G LREA +++  M   P   +W SLL +S+   D+E +E  +R++ E+   N  
Sbjct: 351 DLLSRAGRLREAHDIICSMSMIPDPVLWQSLLGASEIYSDVEMAEIASREIKEMGVNNDG 410

Query: 444 YYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
            +V LSN+YA  GRW DV +VR  M+ +Q+ K  G S +E +   H
Sbjct: 411 DFVLLSNVYAAQGRWKDVGRVRDDMESKQVKKIPGLSYIEAKGTIH 456



 Score =  108 bits (269), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 140/308 (45%), Gaps = 17/308 (5%)

Query: 152 FAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASP-RLFSLCRQLFDEMTHRDVVSWTVMI 210
           F+Q + + +H L  GH    ++ + LL   A SP    S   Q+F  +       W  +I
Sbjct: 16  FSQIKQLQSHFLTAGHFQSSFLRSRLLERCAISPFGDLSFAVQIFRYIPKPLTNDWNAII 75

Query: 211 MGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALA------ACADSGAVEMGAWIHDFI 264
            GF  +     A   +  M     + + +  V+AL       ACA +        +H  I
Sbjct: 76  RGFAGSSHPSLAFSWYRSMLQQSSSSSAICRVDALTCSFTLKACARALCSSAMDQLHCQI 135

Query: 265 RRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAI 324
            R G   D +L T L+D Y+K G +    ++F  +  ++V +WNA+I GL       EA+
Sbjct: 136 NRRGLSADSLLCTTLLDAYSKNGDLISAYKLFDEMPVRDVASWNALIAGLVSGNRASEAM 195

Query: 325 RLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFI-PNVKHYACMV 383
            L+ RME +G+R  EVT++A L AC+H G V  G  IF       +G+   NV      +
Sbjct: 196 ELYKRMETEGIRRSEVTVVAALGACSHLGDVKEGENIF-------HGYSNDNVIVSNAAI 248

Query: 384 DLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVE--LEPAN 441
           D+ ++ G + +A++V        +   W +++      G+   +  +  KL +  ++P +
Sbjct: 249 DMYSKCGFVDKAYQVFEQFTGKKSVVTWNTMITGFAVHGEAHRALEIFDKLEDNGIKPDD 308

Query: 442 SAYYVHLS 449
            +Y   L+
Sbjct: 309 VSYLAALT 316


>AT3G08820.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:2677122-2679179 REVERSE
           LENGTH=685
          Length = 685

 Score =  228 bits (580), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 126/400 (31%), Positives = 213/400 (53%), Gaps = 11/400 (2%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P   V  + +L   ++ S  H  ++    +F  M    + P+ Y   F+ + LSA  H 
Sbjct: 172 IPDRSVVTWTALFSGYTTSGRHREAI---DLFKKMVEMGVKPDSY---FIVQVLSACVHV 225

Query: 153 AQAQS---VHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVM 209
               S   +  ++ ++    + +V  +L+ +YA   ++    R +FD M  +D+V+W+ M
Sbjct: 226 GDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKM-EKARSVFDSMVEKDIVTWSTM 284

Query: 210 IMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGW 269
           I G+ +     + +  F QM    + P++ ++V  L++CA  GA+++G W    I R+ +
Sbjct: 285 IQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEF 344

Query: 270 ELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNR 329
             ++ +  ALIDMYAKCG +  G  VF  +KEK++   NA I GLA     + +  +F +
Sbjct: 345 LTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQ 404

Query: 330 MEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARS 389
            E+ G+  D  T L +L  C H+GL+  G + F   +   Y     V+HY CMVDL  R+
Sbjct: 405 TEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFN-AISCVYALKRTVEHYGCMVDLWGRA 463

Query: 390 GSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLS 449
           G L +A+ ++  MP  P   +WG+LL   +   D + +E V ++L+ LEP N+  YV LS
Sbjct: 464 GMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLS 523

Query: 450 NLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
           N+Y+  GRWD+  +VR MM  + + K  G S +E+E + H
Sbjct: 524 NIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVH 563



 Score =  182 bits (463), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 191/350 (54%), Gaps = 7/350 (2%)

Query: 96  PHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQA 155
           P++F++NSLI  F ++H  H +L    +F  + ++ +  + +TFP + K+ +        
Sbjct: 74  PNIFLYNSLINGFVNNHLFHETL---DLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLG 130

Query: 156 QSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRN 215
             +H+ V+K G  HD+    SLL +Y+ S RL +   +LFDE+  R VV+WT +  G+  
Sbjct: 131 IDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRL-NDAHKLFDEIPDRSVVTWTALFSGYTT 189

Query: 216 AGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVL 275
           +G+  +A+  F++M   GV P+   +V  L+AC   G ++ G WI  ++     + +  +
Sbjct: 190 SGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFV 249

Query: 276 GTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGV 335
            T L+++YAKCG++E+   VF S+ EK++ TW+ +I+G A     +E I LF +M Q+ +
Sbjct: 250 RTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENL 309

Query: 336 RADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREA 395
           + D+ +++  LS+C   G +D+G   +G  +  ++ F+ N+     ++D+ A+ G++   
Sbjct: 310 KPDQFSIVGFLSSCASLGALDLGE--WGISLIDRHEFLTNLFMANALIDMYAKCGAMARG 367

Query: 396 FEVMRCMPFDPTKAMWGSLL-VSSKSQGDLEFSEFVARKLVELEPANSAY 444
           FEV + M       M  ++  ++      L F+ F   + + + P  S +
Sbjct: 368 FEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTF 417


>AT1G13410.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:4601526-4603174 FORWARD
           LENGTH=474
          Length = 474

 Score =  228 bits (580), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 117/320 (36%), Positives = 185/320 (57%), Gaps = 4/320 (1%)

Query: 169 HDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQ 228
            D+   N++L  YA    +   C ++FD+M  R+V SW  +I G+   G+  + L +F++
Sbjct: 119 RDVMSWNTVLEGYANIGDM-EACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLGSFKR 177

Query: 229 MQYAG-VAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGW-ELDVVLGTALIDMYAKC 286
           M   G V PN  TM   L+ACA  GA + G W+H +    G+ ++DV +  ALIDMY KC
Sbjct: 178 MVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVKNALIDMYGKC 237

Query: 287 GRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVL 346
           G +E  + VF  +K +++ +WN +I GLA    G EA+ LF+ M+  G+  D+VT + VL
Sbjct: 238 GAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHEMKNSGISPDKVTFVGVL 297

Query: 347 SACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDP 406
            AC H GLV+ G   F  +    +  +P ++H  C+VDLL+R+G L +A E +  MP   
Sbjct: 298 CACKHMGLVEDGLAYFNSMFT-DFSIMPEIEHCGCVVDLLSRAGFLTQAVEFINKMPVKA 356

Query: 407 TKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRG 466
              +W +LL +SK    ++  E    +L++LEP N A +V LSN+Y + GR+DD  +++ 
Sbjct: 357 DAVIWATLLGASKVYKKVDIGEVALEELIKLEPRNPANFVMLSNIYGDAGRFDDAARLKV 416

Query: 467 MMKDRQLTKDLGCSSVEVEE 486
            M+D    K+ G S +E ++
Sbjct: 417 AMRDTGFKKEAGVSWIETDD 436


>AT1G05750.1 | Symbols: PDE247, CLB19 | Tetratricopeptide repeat
           (TPR)-like superfamily protein | chr1:1721523-1723025
           FORWARD LENGTH=500
          Length = 500

 Score =  226 bits (577), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 128/401 (31%), Positives = 217/401 (54%), Gaps = 37/401 (9%)

Query: 124 FAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQS--VHAHVLKLG-HLHDIYVHNSLLGV 180
           F+ M    + PNH TF  L          ++A    +H +  KLG   + + V  +++G+
Sbjct: 59  FSDMTLAGVEPNHITFIALLSGCGDFTSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGM 118

Query: 181 YAASPRLFSLCR-------------------------------QLFDEMTHRDVVSWTVM 209
           Y+   R F   R                               ++FD+M  RD++SWT M
Sbjct: 119 YSKRGR-FKKARLVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAM 177

Query: 210 IMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGW 269
           I GF   G  ++ALL F +MQ +GV P+ V ++ AL AC + GA+  G W+H ++    +
Sbjct: 178 INGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDF 237

Query: 270 ELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNR 329
           + +V +  +LID+Y +CG VE   +VF +++++ V +WN+VI G A   +  E++  F +
Sbjct: 238 KNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRK 297

Query: 330 MEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARS 389
           M++ G + D VT    L+AC+H GLV+ G + F  +++  Y   P ++HY C+VDL +R+
Sbjct: 298 MQEKGFKPDAVTFTGALTACSHVGLVEEGLRYFQ-IMKCDYRISPRIEHYGCLVDLYSRA 356

Query: 390 GSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQG-DLEFSEFVARKLVELEPANSAYYVHL 448
           G L +A ++++ MP  P + + GSLL +  + G ++  +E + + L +L   + + YV L
Sbjct: 357 GRLEDALKLVQSMPMKPNEVVIGSLLAACSNHGNNIVLAERLMKHLTDLNVKSHSNYVIL 416

Query: 449 SNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
           SN+YA  G+W+   K+R  MK   L K  G SS+E+++  H
Sbjct: 417 SNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSIEIDDCMH 457



 Score =  106 bits (265), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 131/288 (45%), Gaps = 42/288 (14%)

Query: 183 ASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMV 242
           A+P++     Q  ++ T    VSWT  I      G+  +A   F  M  AGV PN +T +
Sbjct: 21  ANPKI-----QRHNQSTSETTVSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFI 75

Query: 243 NALAACAD--SGAVEMGAWIHDFIRRNGWELD-VVLGTALIDMYAKCGRVEEGVRVFSSV 299
             L+ C D  SG+  +G  +H +  + G + + V++GTA+I MY+K GR ++   VF  +
Sbjct: 76  ALLSGCGDFTSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYM 135

Query: 300 KEKNVFTWNAVIKGL-----------------------------ALAKSG--EEAIRLFN 328
           ++KN  TWN +I G                                 K G  EEA+  F 
Sbjct: 136 EDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFR 195

Query: 329 RMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLAR 388
            M+  GV+ D V ++A L+AC + G +  G  +  +++     F  NV+    ++DL  R
Sbjct: 196 EMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQD--FKNNVRVSNSLIDLYCR 253

Query: 389 SGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVE 436
            G +  A +V   M    T   W S++V   + G+   S    RK+ E
Sbjct: 254 CGCVEFARQVFYNME-KRTVVSWNSVIVGFAANGNAHESLVYFRKMQE 300


>AT5G40410.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:16171385-16173211 FORWARD
           LENGTH=608
          Length = 608

 Score =  226 bits (577), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 124/391 (31%), Positives = 205/391 (52%), Gaps = 3/391 (0%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P   +  +NSLI  +S   +       LS    +      PN  TF  +  +       
Sbjct: 92  MPERDLVSWNSLISGYSGRGYLGKCFEVLSRMM-ISEVGFRPNEVTFLSMISACVYGGSK 150

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMG 212
            + + +H  V+K G L ++ V N+ +  Y  +  L S C+ LF++++ +++VSW  MI+ 
Sbjct: 151 EEGRCIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSSCK-LFEDLSIKNLVSWNTMIVI 209

Query: 213 FRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELD 272
               G  +  L  F   +  G  P++ T +  L +C D G V +   IH  I   G+  +
Sbjct: 210 HLQNGLAEKGLAYFNMSRRVGHEPDQATFLAVLRSCEDMGVVRLAQGIHGLIMFGGFSGN 269

Query: 273 VVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQ 332
             + TAL+D+Y+K GR+E+   VF  +   +   W A++   A    G +AI+ F  M  
Sbjct: 270 KCITTALLDLYSKLGRLEDSSTVFHEITSPDSMAWTAMLAAYATHGFGRDAIKHFELMVH 329

Query: 333 DGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSL 392
            G+  D VT   +L+AC+HSGLV+ G+  F  + + +Y   P + HY+CMVDLL RSG L
Sbjct: 330 YGISPDHVTFTHLLNACSHSGLVEEGKHYFETMSK-RYRIDPRLDHYSCMVDLLGRSGLL 388

Query: 393 REAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLY 452
           ++A+ +++ MP +P+  +WG+LL + +   D +     A +L ELEP +   YV LSN+Y
Sbjct: 389 QDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAERLFELEPRDGRNYVMLSNIY 448

Query: 453 AEMGRWDDVEKVRGMMKDRQLTKDLGCSSVE 483
           +  G W D  ++R +MK + L +  GCS +E
Sbjct: 449 SASGLWKDASRIRNLMKQKGLVRASGCSYIE 479



 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 130/274 (47%), Gaps = 20/274 (7%)

Query: 158 VHAHVLKLGHLHDIYVHNSLLGVYAASPRL-FSLC-RQLFDEMTHRDVVSWTVMIMGFRN 215
           +H  V+K       ++ + L+G Y    RL   +C  +LFDEM  RD+VSW  +I G+  
Sbjct: 53  LHCKVVKSVSYRHGFIGDQLVGCYL---RLGHDVCAEKLFDEMPERDLVSWNSLISGYSG 109

Query: 216 AGKFDDALLAFEQMQYA--GVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDV 273
            G          +M  +  G  PN VT ++ ++AC   G+ E G  IH  + + G   +V
Sbjct: 110 RGYLGKCFEVLSRMMISEVGFRPNEVTFLSMISACVYGGSKEEGRCIHGLVMKFGVLEEV 169

Query: 274 VLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVI-----KGLALAKSGEEAIRLFN 328
            +  A I+ Y K G +    ++F  +  KN+ +WN +I      GLA     E+ +  FN
Sbjct: 170 KVVNAFINWYGKTGDLTSSCKLFEDLSIKNLVSWNTMIVIHLQNGLA-----EKGLAYFN 224

Query: 329 RMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLAR 388
              + G   D+ T LAVL +C   G+V + + I G ++ G  GF  N      ++DL ++
Sbjct: 225 MSRRVGHEPDQATFLAVLRSCEDMGVVRLAQGIHGLIMFG--GFSGNKCITTALLDLYSK 282

Query: 389 SGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQG 422
            G L ++  V   +   P    W ++L +  + G
Sbjct: 283 LGRLEDSSTVFHEIT-SPDSMAWTAMLAAYATHG 315


>AT1G25360.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:8894428-8896800 FORWARD
           LENGTH=790
          Length = 790

 Score =  226 bits (576), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 131/421 (31%), Positives = 217/421 (51%), Gaps = 37/421 (8%)

Query: 101 FNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHA 160
           +N++I  + +   +  +L    +   M  + I  + +T+P + ++ +        + VHA
Sbjct: 254 YNAMISGYVNRGFYQEAL---EMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHA 310

Query: 161 HVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFD 220
           +VL+       +  NSL+ +Y    + F   R +F++M  +D+VSW  ++ G+ ++G   
Sbjct: 311 YVLRREDF-SFHFDNSLVSLYYKCGK-FDEARAIFEKMPAKDLVSWNALLSGYVSSGHIG 368

Query: 221 DALLAFEQMQYA-------------------------------GVAPNRVTMVNALAACA 249
           +A L F++M+                                 G  P       A+ +CA
Sbjct: 369 EAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCA 428

Query: 250 DSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNA 309
             GA   G   H  + + G++  +  G ALI MYAKCG VEE  +VF ++   +  +WNA
Sbjct: 429 VLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNA 488

Query: 310 VIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGK 369
           +I  L     G EA+ ++  M + G+R D +TLL VL+AC+H+GLVD GR+ F  + E  
Sbjct: 489 LIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSM-ETV 547

Query: 370 YGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEF 429
           Y   P   HYA ++DLL RSG   +A  V+  +PF PT  +W +LL   +  G++E    
Sbjct: 548 YRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGII 607

Query: 430 VARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
            A KL  L P +   Y+ LSN++A  G+W++V +VR +M+DR + K++ CS +E+E Q H
Sbjct: 608 AADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVH 667

Query: 490 T 490
           T
Sbjct: 668 T 668



 Score =  122 bits (306), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 96/390 (24%), Positives = 167/390 (42%), Gaps = 74/390 (18%)

Query: 100 IFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLS-APCHFAQAQSV 158
           ++N++I  FSH   +++  + +++F  M      P+++TF  +   L+       Q    
Sbjct: 115 MYNAMITGFSH---NNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQF 171

Query: 159 HAHVLKLGHLHDIYVHNSLLGVY---AASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRN 215
           HA  LK G  +   V N+L+ VY   A+SP L    R++FDE+  +D  SWT M+ G+  
Sbjct: 172 HAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVK 231

Query: 216 AGKFD--------------------------------DALLAFEQMQYAGVAPNRVTMVN 243
            G FD                                +AL    +M  +G+  +  T  +
Sbjct: 232 NGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPS 291

Query: 244 ALAACADSGAVEMGAWIHDFI-RRNGWEL-----------------------------DV 273
            + ACA +G +++G  +H ++ RR  +                               D+
Sbjct: 292 VIRACATAGLLQLGKQVHAYVLRREDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDL 351

Query: 274 VLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQD 333
           V   AL+  Y   G + E   +F  +KEKN+ +W  +I GLA    GEE ++LF+ M+++
Sbjct: 352 VSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKRE 411

Query: 334 GVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLR 393
           G    +      + +C   G    G+Q    L+  K GF  ++     ++ + A+ G + 
Sbjct: 412 GFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLL--KIGFDSSLSAGNALITMYAKCGVVE 469

Query: 394 EAFEVMRCMP-FDPTKAMWGSLLVSSKSQG 422
           EA +V R MP  D     W +L+ +    G
Sbjct: 470 EARQVFRTMPCLDSVS--WNALIAALGQHG 497



 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/354 (22%), Positives = 139/354 (39%), Gaps = 79/354 (22%)

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTH-------------- 200
           A++VH +++  G     ++ N L+ VY  S  L +  RQLFDE++               
Sbjct: 33  ARAVHGNIITFGFQPRAHILNRLIDVYCKSSEL-NYARQLFDEISEPDKIARTTMVSGYC 91

Query: 201 -------------------RDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTM 241
                              RD V +  MI GF +      A+  F +M++ G  P+  T 
Sbjct: 92  ASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTF 151

Query: 242 VNALAACADSGAVEMG-AWIHDFIRRNGWELDVVLGTALIDMYAKCGR----VEEGVRVF 296
            + LA  A     E      H    ++G      +  AL+ +Y+KC      +    +VF
Sbjct: 152 ASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVF 211

Query: 297 SSVKEKNVFTW--------------------------------NAVIKGLALAKSGEEAI 324
             + EK+  +W                                NA+I G       +EA+
Sbjct: 212 DEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEAL 271

Query: 325 RLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGK-YGFIPNVKHY-ACM 382
            +  RM   G+  DE T  +V+ AC  +GL+ +G+Q+  +++  + + F     H+   +
Sbjct: 272 EMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSF-----HFDNSL 326

Query: 383 VDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVE 436
           V L  + G   EA  +   MP     + W +LL    S G +  ++ + +++ E
Sbjct: 327 VSLYYKCGKFDEARAIFEKMPAKDLVS-WNALLSGYVSSGHIGEAKLIFKEMKE 379


>AT3G11460.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:3608250-3610121 FORWARD
           LENGTH=623
          Length = 623

 Score =  225 bits (574), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 123/383 (32%), Positives = 210/383 (54%), Gaps = 5/383 (1%)

Query: 101 FNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHA 160
           +N+LI  ++ +    ++     +F  M    +  +  T   L    + P +    +S+H 
Sbjct: 124 YNALISGYTANSKVTDAAY---MFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHG 180

Query: 161 HVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFD 220
             +K G   ++ V NS + +Y     +    R+LFDEM  + +++W  +I G+   G   
Sbjct: 181 QCVKGGLDSEVAVLNSFITMYMKCGSV-EAGRRLFDEMPVKGLITWNAVISGYSQNGLAY 239

Query: 221 DALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALI 280
           D L  +EQM+ +GV P+  T+V+ L++CA  GA ++G  +   +  NG+  +V +  A I
Sbjct: 240 DVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASI 299

Query: 281 DMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEV 340
            MYA+CG + +   VF  +  K++ +W A+I    +   GE  + LF+ M + G+R D  
Sbjct: 300 SMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGA 359

Query: 341 TLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMR 400
             + VLSAC+HSGL D G ++F  + + +Y   P  +HY+C+VDLL R+G L EA E + 
Sbjct: 360 VFVMVLSACSHSGLTDKGLELFRAM-KREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIE 418

Query: 401 CMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDD 460
            MP +P  A+WG+LL + K   +++ +E    K++E EP N  YYV +SN+Y++    + 
Sbjct: 419 SMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEG 478

Query: 461 VEKVRGMMKDRQLTKDLGCSSVE 483
           + ++R MM++R   K  G S VE
Sbjct: 479 IWRIRVMMRERAFRKKPGYSYVE 501



 Score =  145 bits (366), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 90/285 (31%), Positives = 148/285 (51%), Gaps = 5/285 (1%)

Query: 121 LSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGV 180
           +S++  M R+   P+ ++FPF+ KS ++       Q +H HV K G   + +V  +L+ +
Sbjct: 38  ISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVTKGGCETEPFVLTALISM 97

Query: 181 YAASPRLFSLCRQLFDEMTHRDVVS--WTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNR 238
           Y     L +  R++F+E      +S  +  +I G+    K  DA   F +M+  GV+ + 
Sbjct: 98  YCKCG-LVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETGVSVDS 156

Query: 239 VTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSS 298
           VTM+  +  C     + +G  +H    + G + +V +  + I MY KCG VE G R+F  
Sbjct: 157 VTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDE 216

Query: 299 VKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMG 358
           +  K + TWNAVI G +      + + L+ +M+  GV  D  TL++VLS+C H G   +G
Sbjct: 217 MPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIG 276

Query: 359 RQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMP 403
            ++ G LVE   GF+PNV      + + AR G+L +A  V   MP
Sbjct: 277 HEV-GKLVESN-GFVPNVFVSNASISMYARCGNLAKARAVFDIMP 319



 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 102/228 (44%), Gaps = 16/228 (7%)

Query: 206 WTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIR 265
           W V +        F +++  +  M  +G +P+  +    L +CA       G  +H  + 
Sbjct: 21  WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80

Query: 266 RNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFT--WNAVIKGLALAKSGEEA 323
           + G E +  + TALI MY KCG V +  +VF    + +  +  +NA+I G        +A
Sbjct: 81  KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDA 140

Query: 324 IRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMV 383
             +F RM++ GV  D VT+L ++  C     + +GR + G  V+G  G    V      +
Sbjct: 141 AYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKG--GLDSEVAVLNSFI 198

Query: 384 DLLARSGSL---REAFEVMRCMPFDPTKAM--WGSLLVSSKSQGDLEF 426
            +  + GS+   R  F+ M      P K +  W + ++S  SQ  L +
Sbjct: 199 TMYMKCGSVEAGRRLFDEM------PVKGLITWNA-VISGYSQNGLAY 239


>AT1G09410.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr1:3035443-3037560 FORWARD LENGTH=705
          Length = 705

 Score =  224 bits (572), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 116/299 (38%), Positives = 178/299 (59%), Gaps = 2/299 (0%)

Query: 192 RQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADS 251
           R++FD M  R+  SW  +I      G   +AL  F  MQ  GV P   T+++ L+ CA  
Sbjct: 285 RRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASL 344

Query: 252 GAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVI 311
            ++  G  +H  + R  +++DV + + L+ MY KCG + +   +F     K++  WN++I
Sbjct: 345 ASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSII 404

Query: 312 KGLALAKSGEEAIRLFNRMEQDG-VRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKY 370
            G A    GEEA+++F  M   G  + +EVT +A LSAC+++G+V+ G +I+  + E  +
Sbjct: 405 SGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESM-ESVF 463

Query: 371 GFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFV 430
           G  P   HYACMVD+L R+G   EA E++  M  +P  A+WGSLL + ++   L+ +EF 
Sbjct: 464 GVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFC 523

Query: 431 ARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
           A+KL+E+EP NS  Y+ LSN+YA  GRW DV ++R +MK R + K  GCS  EVE + H
Sbjct: 524 AKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVH 582



 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 112/240 (46%), Gaps = 29/240 (12%)

Query: 192 RQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADS 251
           R++FDEM+ R V++WT M+ G+    + DDA   F+ M         V+  + L     +
Sbjct: 192 REIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMP----EKTEVSWTSMLMGYVQN 247

Query: 252 GAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVI 311
           G +E    + + +        V+   A+I    + G + +  RVF S+KE+N  +W  VI
Sbjct: 248 GRIEDAEELFEVMPVK----PVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVI 303

Query: 312 K-----GLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLV 366
           K     G  L     EA+ LF  M++ GVR    TL+++LS C     +  G+Q+   LV
Sbjct: 304 KIHERNGFEL-----EALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLV 358

Query: 367 EGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFD--PTK--AMWGSLLVSSKSQG 422
             ++    +V   + ++ +  + G L     V   + FD  P+K   MW S++    S G
Sbjct: 359 RCQFDV--DVYVASVLMTMYIKCGEL-----VKSKLIFDRFPSKDIIMWNSIISGYASHG 411



 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 98/214 (45%), Gaps = 26/214 (12%)

Query: 113 HHHN--SLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQ---AQSVHAHVLKLGH 167
           H  N   L  L +F  M +  + P   TFP L   LS     A     + VHA +++   
Sbjct: 306 HERNGFELEALDLFILMQKQGVRP---TFPTLISILSVCASLASLHHGKQVHAQLVRCQF 362

Query: 168 LHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFE 227
             D+YV + L+ +Y     L    + +FD    +D++ W  +I G+ + G  ++AL  F 
Sbjct: 363 DVDVYVASVLMTMYIKCGELVK-SKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFC 421

Query: 228 QMQYAG-VAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTA-------- 278
           +M  +G   PN VT V  L+AC+ +G VE G  I++        ++ V G          
Sbjct: 422 EMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYE-------SMESVFGVKPITAHYAC 474

Query: 279 LIDMYAKCGRVEEGVRVFSSVK-EKNVFTWNAVI 311
           ++DM  + GR  E + +  S+  E +   W +++
Sbjct: 475 MVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLL 508



 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 73/330 (22%), Positives = 137/330 (41%), Gaps = 76/330 (23%)

Query: 160 AHVLKLGHLHD------------IYVHNSLLGVYAAS--PRLFSLCRQLFDEMTHRDVVS 205
            H+ ++G +H+            I   NS++  Y A+  PR     R+LFDEM  R+++S
Sbjct: 25  THLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRD---ARKLFDEMPDRNIIS 81

Query: 206 WTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIR 265
           W  ++ G+   G+ D+A   F+ M      P R                           
Sbjct: 82  WNGLVSGYMKNGEIDEARKVFDLM------PER--------------------------- 108

Query: 266 RNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIR 325
                 +VV  TAL+  Y   G+V+    +F  + EKN  +W  ++ G       ++A +
Sbjct: 109 ------NVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACK 162

Query: 326 LFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDL 385
           L+  +       D +   +++      G VD  R+IF  + E       +V  +  MV  
Sbjct: 163 LYEMIPD----KDNIARTSMIHGLCKEGRVDEAREIFDEMSE------RSVITWTTMVTG 212

Query: 386 LARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYY 445
             ++  + +A ++   MP + T+  W S+L+     G +E +E    +L E+ P      
Sbjct: 213 YGQNNRVDDARKIFDVMP-EKTEVSWTSMLMGYVQNGRIEDAE----ELFEVMPVKPV-- 265

Query: 446 VHLSNLYAEMGRWDDVEKVRGM---MKDRQ 472
           +  + + + +G+  ++ K R +   MK+R 
Sbjct: 266 IACNAMISGLGQKGEIAKARRVFDSMKERN 295


>AT3G53360.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:19784502-19786808 FORWARD
           LENGTH=768
          Length = 768

 Score =  224 bits (572), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 118/398 (29%), Positives = 222/398 (55%), Gaps = 6/398 (1%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           + RP    +N +I   +++ +   ++   S+F+ M  +  +P+  +   L  + + P   
Sbjct: 331 IERPDTASWNVIIAGLANNGYADEAV---SVFSQMRSSGFIPDAISLRSLLCAQTKPMAL 387

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEM-THRDVVSWTVMIM 211
           +Q   +H++++K G L D+ V NSLL +Y     L+  C  LF++   + D VSW  ++ 
Sbjct: 388 SQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYC-CFNLFEDFRNNADSVSWNTILT 446

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
                 +  + L  F+ M  +   P+ +TM N L  C +  ++++G+ +H +  + G   
Sbjct: 447 ACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAP 506

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRME 331
           +  +   LIDMYAKCG + +  R+F S+  ++V +W+ +I G A +  GEEA+ LF  M+
Sbjct: 507 EQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEMK 566

Query: 332 QDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGS 391
             G+  + VT + VL+AC+H GLV+ G +++  + + ++G  P  +H +C+VDLLAR+G 
Sbjct: 567 SAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATM-QTEHGISPTKEHCSCVVDLLARAGR 625

Query: 392 LREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNL 451
           L EA   +  M  +P   +W +LL + K+QG++  ++  A  +++++P NS  +V L ++
Sbjct: 626 LNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVHLAQKAAENILKIDPFNSTAHVLLCSM 685

Query: 452 YAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
           +A  G W++   +R  MK   + K  G S +E+E++ H
Sbjct: 686 HASSGNWENAALLRSSMKKHDVKKIPGQSWIEIEDKIH 723



 Score =  120 bits (302), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/401 (21%), Positives = 180/401 (44%), Gaps = 13/401 (3%)

Query: 23  FDYTLRMSGFSDRAVTLLKDFC-----HSRLHVQQIQAQLILHNLQSNPTIAHHFITVCQ 77
           FD+  + S F  R  T +   C      S    ++I   ++  N + +  + +H +++  
Sbjct: 54  FDFAQKNSSFKIRLRTYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSM-Y 112

Query: 78  SHXXXXXXXXXXXXXVPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHY 137
                          +P  ++  + S+I  +S +     ++    ++  M +  ++P+ +
Sbjct: 113 GKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIR---LYLKMLQEDLVPDQF 169

Query: 138 TFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDE 197
            F  + K+ ++       + +HA V+KL     +   N+L+ +Y    ++    R +F  
Sbjct: 170 AFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASR-VFYG 228

Query: 198 MTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVA-PNRVTMVNALAACADSGAVEM 256
           +  +D++SW+ +I GF   G   +AL   ++M   GV  PN     ++L AC+     + 
Sbjct: 229 IPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDY 288

Query: 257 GAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLAL 316
           G+ IH    ++    + + G +L DMYA+CG +    RVF  ++  +  +WN +I GLA 
Sbjct: 289 GSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLAN 348

Query: 317 AKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNV 376
               +EA+ +F++M   G   D ++L ++L A      +  G QI  +++  K+GF+ ++
Sbjct: 349 NGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIHSYII--KWGFLADL 406

Query: 377 KHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVS 417
                ++ +      L   F +      +     W ++L +
Sbjct: 407 TVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTA 447



 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 79/144 (54%), Gaps = 1/144 (0%)

Query: 219 FDDALLAFEQMQYAGVAPNRV-TMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGT 277
           + +AL AF+  Q       R+ T ++ + AC+ S ++  G  IHD I  +  + D +L  
Sbjct: 47  YREALEAFDFAQKNSSFKIRLRTYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNN 106

Query: 278 ALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRA 337
            ++ MY KCG + +   VF  + E+N+ ++ +VI G +    G EAIRL+ +M Q+ +  
Sbjct: 107 HILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVP 166

Query: 338 DEVTLLAVLSACNHSGLVDMGRQI 361
           D+    +++ AC  S  V +G+Q+
Sbjct: 167 DQFAFGSIIKACASSSDVGLGKQL 190


>AT4G39530.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:18374736-18377240 REVERSE
           LENGTH=834
          Length = 834

 Score =  224 bits (572), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 123/392 (31%), Positives = 209/392 (53%), Gaps = 3/392 (0%)

Query: 98  VFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQS 157
           V +FN++I  +S           L+IF  M    I P+  TF  L ++ ++      ++ 
Sbjct: 416 VVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQ 475

Query: 158 VHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAG 217
           +H  + K G   DI+  ++L+ VY+    L    R +FDEM  +D+V W  M  G+    
Sbjct: 476 IHGLMFKYGLNLDIFAGSALIDVYSNCYCLKD-SRLVFDEMKVKDLVIWNSMFAGYVQQS 534

Query: 218 KFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGT 277
           + ++AL  F ++Q +   P+  T  N + A  +  +V++G   H  + + G E +  +  
Sbjct: 535 ENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITN 594

Query: 278 ALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRA 337
           AL+DMYAKCG  E+  + F S   ++V  WN+VI   A    G++A+++  +M  +G+  
Sbjct: 595 ALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEP 654

Query: 338 DEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFE 397
           + +T + VLSAC+H+GLV+ G + F  ++  ++G  P  +HY CMV LL R+G L +A E
Sbjct: 655 NYITFVGVLSACSHAGLVEDGLKQFELML--RFGIEPETEHYVCMVSLLGRAGRLNKARE 712

Query: 398 VMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGR 457
           ++  MP  P   +W SLL      G++E +E  A   +  +P +S  +  LSN+YA  G 
Sbjct: 713 LIEKMPTKPAAIVWRSLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLSNIYASKGM 772

Query: 458 WDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
           W + +KVR  MK   + K+ G S + + ++ H
Sbjct: 773 WTEAKKVRERMKVEGVVKEPGRSWIGINKEVH 804



 Score =  115 bits (289), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 159/354 (44%), Gaps = 9/354 (2%)

Query: 48  LHVQQI-QAQLILHNLQSNPTIAHHFITVCQSHXXXXXXXXXXXXXVPRPHVFIFNSLIR 106
           LH Q +   Q+I+  L+ +  +++  I +  S              +P  ++  +++++ 
Sbjct: 60  LHYQNVVHGQIIVWGLELDTYLSNILINL-YSRAGGMVYARKVFEKMPERNLVSWSTMVS 118

Query: 107 AFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQ--SVHAHVLK 164
           A +H   +  SL     F    +++  PN Y      ++ S      +     + + ++K
Sbjct: 119 ACNHHGIYEESLVVFLEFWRTRKDS--PNEYILSSFIQACSGLDGRGRWMVFQLQSFLVK 176

Query: 165 LGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALL 224
            G   D+YV   L+  Y     +    R +FD +  +  V+WT MI G    G+   +L 
Sbjct: 177 SGFDRDVYVGTLLIDFYLKDGNI-DYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQ 235

Query: 225 AFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYA 284
            F Q+    V P+   +   L+AC+    +E G  IH  I R G E+D  L   LID Y 
Sbjct: 236 LFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYV 295

Query: 285 KCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLA 344
           KCGRV    ++F+ +  KN+ +W  ++ G       +EA+ LF  M + G++ D     +
Sbjct: 296 KCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSS 355

Query: 345 VLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEV 398
           +L++C     +  G Q+  + ++   G    V +   ++D+ A+   L +A +V
Sbjct: 356 ILTSCASLHALGFGTQVHAYTIKANLGNDSYVTN--SLIDMYAKCDCLTDARKV 407



 Score =  108 bits (271), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 147/316 (46%), Gaps = 15/316 (4%)

Query: 117 SLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNS 176
           S   L +F  +  + ++P+ Y    +  + S        + +HAH+L+ G   D  + N 
Sbjct: 230 SYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNV 289

Query: 177 LLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAP 236
           L+  Y    R+ +   +LF+ M +++++SWT ++ G++      +A+  F  M   G+ P
Sbjct: 290 LIDSYVKCGRVIA-AHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKP 348

Query: 237 NRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVF 296
           +     + L +CA   A+  G  +H +  +     D  +  +LIDMYAKC  + +  +VF
Sbjct: 349 DMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVF 408

Query: 297 SSVKEKNVFTWNAVIKGLA-LAKSGE--EAIRLFNRMEQDGVRADEVTLLAVLSACNHSG 353
                 +V  +NA+I+G + L    E  EA+ +F  M    +R   +T +++L A     
Sbjct: 409 DIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLT 468

Query: 354 LVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTK----A 409
            + + +QI G +   KYG   ++   + ++D+ +    L+++  V     FD  K     
Sbjct: 469 SLGLSKQIHGLMF--KYGLNLDIFAGSALIDVYSNCYCLKDSRLV-----FDEMKVKDLV 521

Query: 410 MWGSLLVSSKSQGDLE 425
           +W S+      Q + E
Sbjct: 522 IWNSMFAGYVQQSENE 537


>AT5G39350.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:15750929-15752962 FORWARD
           LENGTH=677
          Length = 677

 Score =  224 bits (571), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 125/399 (31%), Positives = 207/399 (51%), Gaps = 9/399 (2%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           + R  V  +  +I  ++      N+L    +   M    + PN  T   L          
Sbjct: 279 MERRDVITWTCMINGYTEDGDVENALELCRL---MQFEGVRPNAVTIASLVSVCGDALKV 335

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMG 212
              + +H   ++     DI +  SL+ +YA   R+  LC ++F   +      W+ +I G
Sbjct: 336 NDGKCLHGWAVRQQVYSDIIIETSLISMYAKCKRV-DLCFRVFSGASKYHTGPWSAIIAG 394

Query: 213 FRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELD 272
                   DAL  F++M+   V PN  T+ + L A A    +     IH ++ + G+   
Sbjct: 395 CVQNELVSDALGLFKRMRREDVEPNIATLNSLLPAYAALADLRQAMNIHCYLTKTGFMSS 454

Query: 273 VVLGTALIDMYAKCGRVEEGVRVFSSVKEK----NVFTWNAVIKGLALAKSGEEAIRLFN 328
           +   T L+ +Y+KCG +E   ++F+ ++EK    +V  W A+I G  +   G  A+++F 
Sbjct: 455 LDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFM 514

Query: 329 RMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLAR 388
            M + GV  +E+T  + L+AC+HSGLV+ G  +F F++E  Y  +    HY C+VDLL R
Sbjct: 515 EMVRSGVTPNEITFTSALNACSHSGLVEEGLTLFRFMLE-HYKTLARSNHYTCIVDLLGR 573

Query: 389 SGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHL 448
           +G L EA+ ++  +PF+PT  +WG+LL +  +  +++  E  A KL ELEP N+  YV L
Sbjct: 574 AGRLDEAYNLITTIPFEPTSTVWGALLAACVTHENVQLGEMAANKLFELEPENTGNYVLL 633

Query: 449 SNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQ 487
           +N+YA +GRW D+EKVR MM++  L K  G S++E+   
Sbjct: 634 ANIYAALGRWKDMEKVRSMMENVGLRKKPGHSTIEIRSN 672



 Score =  144 bits (362), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 143/276 (51%), Gaps = 6/276 (2%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTI--LPNHYTFPFLFKSLSAPC 150
           +P+  +  +N +IR +     +H+++   S+F  M    +  +P+ YT+PF+ K+     
Sbjct: 75  MPQSSLLSYNIVIRMYVREGLYHDAI---SVFIRMVSEGVKCVPDGYTYPFVAKAAGELK 131

Query: 151 HFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMI 210
                  VH  +L+     D YV N+LL +Y    ++  + R +FD M +RDV+SW  MI
Sbjct: 132 SMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKV-EMARDVFDVMKNRDVISWNTMI 190

Query: 211 MGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWE 270
            G+   G  +DAL+ F+ M    V  +  T+V+ L  C     +EMG  +H  +      
Sbjct: 191 SGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLG 250

Query: 271 LDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRM 330
             + +  AL++MY KCGR++E   VF  ++ ++V TW  +I G       E A+ L   M
Sbjct: 251 DKIEVKNALVNMYLKCGRMDEARFVFDRMERRDVITWTCMINGYTEDGDVENALELCRLM 310

Query: 331 EQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLV 366
           + +GVR + VT+ +++S C  +  V+ G+ + G+ V
Sbjct: 311 QFEGVRPNAVTIASLVSVCGDALKVNDGKCLHGWAV 346



 Score =  128 bits (321), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 160/329 (48%), Gaps = 9/329 (2%)

Query: 98  VFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQS 157
           V  +N++I  +  + + +++L    +F  M   ++  +H T   +             ++
Sbjct: 183 VISWNTMISGYYRNGYMNDALM---MFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRN 239

Query: 158 VHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAG 217
           VH  V +      I V N+L+ +Y    R+    R +FD M  RDV++WT MI G+   G
Sbjct: 240 VHKLVEEKRLGDKIEVKNALVNMYLKCGRM-DEARFVFDRMERRDVITWTCMINGYTEDG 298

Query: 218 KFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGT 277
             ++AL     MQ+ GV PN VT+ + ++ C D+  V  G  +H +  R     D+++ T
Sbjct: 299 DVENALELCRLMQFEGVRPNAVTIASLVSVCGDALKVNDGKCLHGWAVRQQVYSDIIIET 358

Query: 278 ALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRA 337
           +LI MYAKC RV+   RVFS   + +   W+A+I G    +   +A+ LF RM ++ V  
Sbjct: 359 SLISMYAKCKRVDLCFRVFSGASKYHTGPWSAIIAGCVQNELVSDALGLFKRMRREDVEP 418

Query: 338 DEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFE 397
           +  TL ++L A  ++ L D+ + +       K GF+ ++     +V + ++ G+L  A +
Sbjct: 419 NIATLNSLLPA--YAALADLRQAMNIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESAHK 476

Query: 398 VMRCMP---FDPTKAMWGSLLVSSKSQGD 423
           +   +          +WG+L+      GD
Sbjct: 477 IFNGIQEKHKSKDVVLWGALISGYGMHGD 505



 Score = 98.6 bits (244), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 141/298 (47%), Gaps = 7/298 (2%)

Query: 130 NTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFS 189
           N  L +   +  L    +A    ++ +++H HV+  G +   ++ ++L   YA    + +
Sbjct: 9   NNALSSVKQYQSLLNHFAATQSISKTKALHCHVITGGRVSG-HILSTLSVTYALCGHI-T 66

Query: 190 LCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGV--APNRVTMVNALAA 247
             R+LF+EM    ++S+ ++I  +   G + DA+  F +M   GV   P+  T      A
Sbjct: 67  YARKLFEEMPQSSLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVKCVPDGYTYPFVAKA 126

Query: 248 CADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTW 307
             +  ++++G  +H  I R+ +  D  +  AL+ MY   G+VE    VF  +K ++V +W
Sbjct: 127 AGELKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMKNRDVISW 186

Query: 308 NAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVE 367
           N +I G        +A+ +F+ M  + V  D  T++++L  C H   ++MGR +   + E
Sbjct: 187 NTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEE 246

Query: 368 GKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLE 425
            + G    VK+   +V++  + G + EA  V   M        W  ++      GD+E
Sbjct: 247 KRLGDKIEVKN--ALVNMYLKCGRMDEARFVFDRMERRDV-ITWTCMINGYTEDGDVE 301


>AT3G05240.1 | Symbols: MEF19 | mitochondrial editing factor  19 |
           chr3:1493684-1495381 REVERSE LENGTH=565
          Length = 565

 Score =  224 bits (571), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 131/400 (32%), Positives = 209/400 (52%), Gaps = 14/400 (3%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P+ +V  + SLI  F +++   +++     F  M  N +  N      L  +       
Sbjct: 168 IPQWNVVAWGSLISGFVNNNRFSDAIEA---FREMQSNGVKANETIMVDLLVACGRCKDI 224

Query: 153 AQAQSVHAHVLKLGH--------LHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVV 204
              +  H  +  LG           ++ +  SL+ +YA    L +  R LFD M  R +V
Sbjct: 225 VTGKWFHGFLQGLGFDPYFQSKVGFNVILATSLIDMYAKCGDLRT-ARYLFDGMPERTLV 283

Query: 205 SWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFI 264
           SW  +I G+   G  ++AL  F  M   G+AP++VT ++ + A    G  ++G  IH ++
Sbjct: 284 SWNSIITGYSQNGDAEEALCMFLDMLDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYV 343

Query: 265 RRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAI 324
            + G+  D  +  AL++MYAK G  E   + F  +++K+   W  VI GLA    G EA+
Sbjct: 344 SKTGFVKDAAIVCALVNMYAKTGDAESAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEAL 403

Query: 325 RLFNRMEQDG-VRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMV 383
            +F RM++ G    D +T L VL AC+H GLV+ G++ F  + +  +G  P V+HY CMV
Sbjct: 404 SIFQRMQEKGNATPDGITYLGVLYACSHIGLVEEGQRYFAEMRD-LHGLEPTVEHYGCMV 462

Query: 384 DLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSA 443
           D+L+R+G   EA  +++ MP  P   +WG+LL       +LE ++ +   + E E   S 
Sbjct: 463 DILSRAGRFEEAERLVKTMPVKPNVNIWGALLNGCDIHENLELTDRIRSMVAEPEELGSG 522

Query: 444 YYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVE 483
            YV LSN+YA+ GRW DV+ +R  MK +++ K LG SSVE
Sbjct: 523 IYVLLSNIYAKAGRWADVKLIRESMKSKRVDKVLGHSSVE 562



 Score =  177 bits (449), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 114/420 (27%), Positives = 199/420 (47%), Gaps = 17/420 (4%)

Query: 44  CHSRLHVQQIQAQLILHNLQSNPTIAHHFITVCQS--HXXXXXXXXXXXXXVPRPHVFIF 101
           C S + + Q+   +I  ++  N       I  C +                +  P V+I+
Sbjct: 16  CRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDCPSVYIW 75

Query: 102 NSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAH 161
           NS+IR +S+S +   +L     +  M R    P+++TFP++ K+ S          VH  
Sbjct: 76  NSMIRGYSNSPNPDKALI---FYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCVHGF 132

Query: 162 VLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDD 221
           V+K G   ++YV   LL +Y     + +   ++F+++   +VV+W  +I GF N  +F D
Sbjct: 133 VVKTGFEVNMYVSTCLLHMYMCCGEV-NYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSD 191

Query: 222 ALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWE--------LDV 273
           A+ AF +MQ  GV  N   MV+ L AC     +  G W H F++  G++         +V
Sbjct: 192 AIEAFREMQSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQGLGFDPYFQSKVGFNV 251

Query: 274 VLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQD 333
           +L T+LIDMYAKCG +     +F  + E+ + +WN++I G +     EEA+ +F  M   
Sbjct: 252 ILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDL 311

Query: 334 GVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLR 393
           G+  D+VT L+V+ A    G   +G+ I  ++   K GF+ +      +V++ A++G   
Sbjct: 312 GIAPDKVTFLSVIRASMIQGCSQLGQSIHAYV--SKTGFVKDAAIVCALVNMYAKTGDAE 369

Query: 394 EAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYA 453
            A +    +    T A W  +++   S G    +  + +++ E   A      +L  LYA
Sbjct: 370 SAKKAFEDLEKKDTIA-WTVVIIGLASHGHGNEALSIFQRMQEKGNATPDGITYLGVLYA 428


>AT1G77010.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:28942710-28944797 FORWARD
           LENGTH=695
          Length = 695

 Score =  223 bits (569), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 130/413 (31%), Positives = 217/413 (52%), Gaps = 35/413 (8%)

Query: 98  VFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQS 157
           V ++NS+I  +  ++    +L    +F  M RN    +  T   +  +          + 
Sbjct: 284 VILWNSMISGYIANNMKMEALV---LFNEM-RNETREDSRTLAAVINACIGLGFLETGKQ 339

Query: 158 VHAHVLKLGHLHDIYVHNSLLGVYA--ASP----RLFSL--------------------- 190
           +H H  K G + DI V ++LL +Y+   SP    +LFS                      
Sbjct: 340 MHCHACKFGLIDDIVVASTLLDMYSKCGSPMEACKLFSEVESYDTILLNSMIKVYFSCGR 399

Query: 191 ---CRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAA 247
               +++F+ + ++ ++SW  M  GF   G   + L  F QM    +  + V++ + ++A
Sbjct: 400 IDDAKRVFERIENKSLISWNSMTNGFSQNGCTVETLEYFHQMHKLDLPTDEVSLSSVISA 459

Query: 248 CADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTW 307
           CA   ++E+G  +       G + D V+ ++LID+Y KCG VE G RVF ++ + +   W
Sbjct: 460 CASISSLELGEQVFARATIVGLDSDQVVSSSLIDLYCKCGFVEHGRRVFDTMVKSDEVPW 519

Query: 308 NAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVE 367
           N++I G A    G EAI LF +M   G+R  ++T + VL+ACN+ GLV+ GR++F  + +
Sbjct: 520 NSMISGYATNGQGFEAIDLFKKMSVAGIRPTQITFMVVLTACNYCGLVEEGRKLFESM-K 578

Query: 368 GKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFS 427
             +GF+P+ +H++CMVDLLAR+G + EA  ++  MPFD   +MW S+L    + G     
Sbjct: 579 VDHGFVPDKEHFSCMVDLLARAGYVEEAINLVEEMPFDVDGSMWSSILRGCVANGYKAMG 638

Query: 428 EFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCS 480
           +  A K++ELEP NS  YV LS ++A  G W+    VR +M++  +TK+ G S
Sbjct: 639 KKAAEKIIELEPENSVAYVQLSAIFATSGDWESSALVRKLMRENNVTKNPGSS 691



 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 123/258 (47%), Gaps = 38/258 (14%)

Query: 169 HDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQ 228
            D Y  N ++  +A +  L S+ R+LF+ M  +DVV+   ++ G+   G  ++AL  F++
Sbjct: 122 RDGYSWNVVVSGFAKAGEL-SVARRLFNAMPEKDVVTLNSLLHGYILNGYAEEALRLFKE 180

Query: 229 MQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAK--- 285
           + ++  A   +T+   L ACA+  A++ G  IH  I   G E D  + ++L+++YAK   
Sbjct: 181 LNFSADA---ITLTTVLKACAELEALKCGKQIHAQILIGGVECDSKMNSSLVNVYAKCGD 237

Query: 286 ----------------------------CGRVEEGVRVFSSVKEKNVFTWNAVIKGLALA 317
                                       CGRV E   +F     + V  WN++I G    
Sbjct: 238 LRMASYMLEQIREPDDHSLSALISGYANCGRVNESRGLFDRKSNRCVILWNSMISGYIAN 297

Query: 318 KSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVK 377
               EA+ LFN M  +  R D  TL AV++AC   G ++ G+Q+       K+G I ++ 
Sbjct: 298 NMKMEALVLFNEMRNE-TREDSRTLAAVINACIGLGFLETGKQMHCHAC--KFGLIDDIV 354

Query: 378 HYACMVDLLARSGSLREA 395
             + ++D+ ++ GS  EA
Sbjct: 355 VASTLLDMYSKCGSPMEA 372



 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 139/332 (41%), Gaps = 68/332 (20%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P   V   NSL+  +  + +   +L    +F  ++      +  T   + K+ +     
Sbjct: 150 MPEKDVVTLNSLLHGYILNGYAEEAL---RLFKELN---FSADAITLTTVLKACAELEAL 203

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRL------------------------F 188
              + +HA +L  G   D  +++SL+ VYA    L                        +
Sbjct: 204 KCGKQIHAQILIGGVECDSKMNSSLVNVYAKCGDLRMASYMLEQIREPDDHSLSALISGY 263

Query: 189 SLC------RQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMV 242
           + C      R LFD  ++R V+ W  MI G+       +AL+ F +M+      +R T+ 
Sbjct: 264 ANCGRVNESRGLFDRKSNRCVILWNSMISGYIANNMKMEALVLFNEMRNETREDSR-TLA 322

Query: 243 NALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAK----------------- 285
             + AC   G +E G  +H    + G   D+V+ + L+DMY+K                 
Sbjct: 323 AVINACIGLGFLETGKQMHCHACKFGLIDDIVVASTLLDMYSKCGSPMEACKLFSEVESY 382

Query: 286 --------------CGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRME 331
                         CGR+++  RVF  ++ K++ +WN++  G +      E +  F++M 
Sbjct: 383 DTILLNSMIKVYFSCGRIDDAKRVFERIENKSLISWNSMTNGFSQNGCTVETLEYFHQMH 442

Query: 332 QDGVRADEVTLLAVLSACNHSGLVDMGRQIFG 363
           +  +  DEV+L +V+SAC     +++G Q+F 
Sbjct: 443 KLDLPTDEVSLSSVISACASISSLELGEQVFA 474



 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 116/255 (45%), Gaps = 46/255 (18%)

Query: 142 LFKSLSAPCHFAQAQSVHAHVLKLGHLHDI-YVHNSLLGVYAASPRLFSLCRQLFDEMTH 200
           L +S S+       +  +  +LK G L  I  V N LL +Y+ S ++  + R LFDEM  
Sbjct: 32  LLQSCSSRNRETLWRQTNGLLLKKGFLSSIVIVANHLLQMYSRSGKM-GIARNLFDEMPD 90

Query: 201 RDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWI 260
           R+  SW  MI G+ N+G+   +L  F+ M                               
Sbjct: 91  RNYFSWNTMIEGYMNSGEKGTSLRFFDMMP------------------------------ 120

Query: 261 HDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSG 320
                R+G+  +VV     +  +AK G +    R+F+++ EK+V T N+++ G  L    
Sbjct: 121 ----ERDGYSWNVV-----VSGFAKAGELSVARRLFNAMPEKDVVTLNSLLHGYILNGYA 171

Query: 321 EEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYA 380
           EEA+RLF  +      AD +TL  VL AC     +  G+QI   ++ G  G   + K  +
Sbjct: 172 EEALRLFKEL---NFSADAITLTTVLKACAELEALKCGKQIHAQILIG--GVECDSKMNS 226

Query: 381 CMVDLLARSGSLREA 395
            +V++ A+ G LR A
Sbjct: 227 SLVNVYAKCGDLRMA 241


>AT1G17630.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:6064525-6066720 FORWARD
           LENGTH=731
          Length = 731

 Score =  223 bits (569), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 122/323 (37%), Positives = 201/323 (62%), Gaps = 10/323 (3%)

Query: 175 NSLLGVYAASPRL---FSLCRQLFDEMTH-----RDVVSWTVMIMGFRNAGKFDDALLAF 226
           NSL+  +  + +L    SL  +L +EM H      +VV+WT +I G    G+ DD+L  F
Sbjct: 364 NSLITSFVDAGKLDEALSLFSEL-EEMNHVCNVKANVVTWTSVIKGCNVQGRGDDSLEYF 422

Query: 227 EQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKC 286
            QMQ++ V  N VT+   L+ CA+  A+ +G  IH  + R     ++++  AL++MYAKC
Sbjct: 423 RQMQFSKVLANSVTICCILSICAELPALNLGREIHGHVIRTSMSENILVQNALVNMYAKC 482

Query: 287 GRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVL 346
           G + EG  VF ++++K++ +WN++IKG  +    E+A+ +F+RM   G   D + L+AVL
Sbjct: 483 GLLSEGSLVFEAIRDKDLISWNSIIKGYGMHGFAEKALSMFDRMISSGFHPDGIALVAVL 542

Query: 347 SACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDP 406
           SAC+H+GLV+ GR+IF + +  ++G  P  +HYAC+VDLL R G L+EA E+++ MP +P
Sbjct: 543 SACSHAGLVEKGREIF-YSMSKRFGLEPQQEHYACIVDLLGRVGFLKEASEIVKNMPMEP 601

Query: 407 TKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRG 466
              + G+LL S +   +++ +E +A +L  LEP  +  Y+ LSN+Y+  GRW++   VR 
Sbjct: 602 KVCVLGALLNSCRMHKNVDIAEGIASQLSVLEPERTGSYMLLSNIYSAGGRWEESANVRA 661

Query: 467 MMKDRQLTKDLGCSSVEVEEQGH 489
           + K + L K  G S +EV+++ +
Sbjct: 662 LAKKKDLKKVSGSSWIEVKKKKY 684



 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/394 (22%), Positives = 165/394 (41%), Gaps = 89/394 (22%)

Query: 100 IFNSLIRA-FSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSV 158
           ++NS+++A  SH  + +     L ++  M +  +  + Y  P + ++      F   ++ 
Sbjct: 125 LWNSILKANVSHGLYEN----ALELYRGMRQRGLTGDGYILPLILRACRYLGRFGLCRAF 180

Query: 159 HAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRN--- 215
           H  V+++G   +++V N LL +Y  + R+      LF EM  R+ +SW VMI GF     
Sbjct: 181 HTQVIQIGLKENLHVVNELLTLYPKAGRMGD-AYNLFVEMPVRNRMSWNVMIKGFSQEYD 239

Query: 216 --------------------------------AGKFDDALLAFEQMQYAGVAPNRVTMVN 243
                                            GKF+D L  F  M+ +G A +   +  
Sbjct: 240 CESAVKIFEWMQREEFKPDEVTWTSVLSCHSQCGKFEDVLKYFHLMRMSGNAVSGEALAV 299

Query: 244 ALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEK- 302
             + CA+  A+ +   +H ++ + G+E  +    ALI +Y K G+V++   +F  ++ K 
Sbjct: 300 FFSVCAELEALSIAEKVHGYVIKGGFEEYLPSRNALIHVYGKQGKVKDAEHLFRQIRNKG 359

Query: 303 --------------------------------------NVFTWNAVIKGLALAKSGEEAI 324
                                                 NV TW +VIKG  +   G++++
Sbjct: 360 IESWNSLITSFVDAGKLDEALSLFSELEEMNHVCNVKANVVTWTSVIKGCNVQGRGDDSL 419

Query: 325 RLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVD 384
             F +M+   V A+ VT+  +LS C     +++GR+I G ++  +     N+     +V+
Sbjct: 420 EYFRQMQFSKVLANSVTICCILSICAELPALNLGREIHGHVI--RTSMSENILVQNALVN 477

Query: 385 LLARSGSLREA---FEVMRCMPFDPTKAMWGSLL 415
           + A+ G L E    FE +R    D     W S++
Sbjct: 478 MYAKCGLLSEGSLVFEAIR----DKDLISWNSII 507



 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 97/206 (47%), Gaps = 5/206 (2%)

Query: 95  RPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQ 154
           + +V  + S+I+  +      +SL     F  M  + +L N  T   +    +       
Sbjct: 396 KANVVTWTSVIKGCNVQGRGDDSL---EYFRQMQFSKVLANSVTICCILSICAELPALNL 452

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFR 214
            + +H HV++     +I V N+L+ +YA    L S    +F+ +  +D++SW  +I G+ 
Sbjct: 453 GREIHGHVIRTSMSENILVQNALVNMYAKCG-LLSEGSLVFEAIRDKDLISWNSIIKGYG 511

Query: 215 NAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWI-HDFIRRNGWELDV 273
             G  + AL  F++M  +G  P+ + +V  L+AC+ +G VE G  I +   +R G E   
Sbjct: 512 MHGFAEKALSMFDRMISSGFHPDGIALVAVLSACSHAGLVEKGREIFYSMSKRFGLEPQQ 571

Query: 274 VLGTALIDMYAKCGRVEEGVRVFSSV 299
                ++D+  + G ++E   +  ++
Sbjct: 572 EHYACIVDLLGRVGFLKEASEIVKNM 597



 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 75/353 (21%), Positives = 147/353 (41%), Gaps = 59/353 (16%)

Query: 154 QAQSVHAHVLKLGHLHDIYVHN-----SLLGVYAASPRLFSLCRQLFDEMTH---RDVVS 205
           Q + VHA VL    L D    +     +L+ VYA    L    R +F+ ++     D+  
Sbjct: 71  QCRQVHAQVL----LSDFIFRSGSLAANLISVYARLGLLLD-ARNVFETVSLVLLSDLRL 125

Query: 206 WTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIR 265
           W  ++    + G +++AL  +  M+  G+  +   +   L AC   G   +    H  + 
Sbjct: 126 WNSILKANVSHGLYENALELYRGMRQRGLTGDGYILPLILRACRYLGRFGLCRAFHTQVI 185

Query: 266 RNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIR 325
           + G + ++ +   L+ +Y K GR+ +   +F  +  +N  +WN +IKG +     E A++
Sbjct: 186 QIGLKENLHVVNELLTLYPKAGRMGDAYNLFVEMPVRNRMSWNVMIKGFSQEYDCESAVK 245

Query: 326 LFNRMEQDGVRADEVTLLAVL-----------------------------------SACN 350
           +F  M+++  + DEVT  +VL                                   S C 
Sbjct: 246 IFEWMQREEFKPDEVTWTSVLSCHSQCGKFEDVLKYFHLMRMSGNAVSGEALAVFFSVCA 305

Query: 351 HSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAM 410
               + +  ++ G++++G  GF   +     ++ +  + G +++A  + R +     ++ 
Sbjct: 306 ELEALSIAEKVHGYVIKG--GFEEYLPSRNALIHVYGKQGKVKDAEHLFRQIRNKGIES- 362

Query: 411 WGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEK 463
           W SL+ S    G L+ +  +     ELE  N     H+ N+ A +  W  V K
Sbjct: 363 WNSLITSFVDAGKLDEALSL---FSELEEMN-----HVCNVKANVVTWTSVIK 407


>AT5G46460.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:18840305-18842398 FORWARD
           LENGTH=697
          Length = 697

 Score =  223 bits (568), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 126/397 (31%), Positives = 205/397 (51%), Gaps = 4/397 (1%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P  +V  + ++I     +     S   L +F +M R  I      F  +  + +    F
Sbjct: 185 MPGKNVISWTTMICGLDQNER---SGEALDLFKNMLRCCIKSTSRPFTCVITACANAPAF 241

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMG 212
                VH  ++KLG L++ YV  SL+  YA   R+    R++FDE  H  V  WT ++ G
Sbjct: 242 HMGIQVHGLIIKLGFLYEEYVSASLITFYANCKRIGD-SRKVFDEKVHEQVAVWTALLSG 300

Query: 213 FRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELD 272
           +    K +DAL  F  M    + PN+ T  + L +C+  G ++ G  +H    + G E D
Sbjct: 301 YSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNSCSALGTLDWGKEMHGVAVKLGLETD 360

Query: 273 VVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQ 332
             +G +L+ MY+  G V + V VF  + +K++ +WN++I G A    G+ A  +F +M +
Sbjct: 361 AFVGNSLVVMYSDSGNVNDAVSVFIKIFKKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIR 420

Query: 333 DGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSL 392
                DE+T   +LSAC+H G ++ GR++F ++  G       ++HY CMVD+L R G L
Sbjct: 421 LNKEPDEITFTGLLSACSHCGFLEKGRKLFYYMSSGINHIDRKIQHYTCMVDILGRCGKL 480

Query: 393 REAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLY 452
           +EA E++  M   P + +W +LL + +   D++  E  A  +  L+  +SA YV LSN+Y
Sbjct: 481 KEAEELIERMVVKPNEMVWLALLSACRMHSDVDRGEKAAAAIFNLDSKSSAAYVLLSNIY 540

Query: 453 AEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
           A  GRW +V K+R  MK   + K  G S V +  + H
Sbjct: 541 ASAGRWSNVSKLRVKMKKNGIMKKPGSSWVVIRGKKH 577



 Score =  102 bits (253), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 123/249 (49%), Gaps = 5/249 (2%)

Query: 193 QLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSG 252
           +LF +M  ++V+SWT MI G     +  +AL  F+ M    +          + ACA++ 
Sbjct: 180 KLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCCIKSTSRPFTCVITACANAP 239

Query: 253 AVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIK 312
           A  MG  +H  I + G+  +  +  +LI  YA C R+ +  +VF     + V  W A++ 
Sbjct: 240 AFHMGIQVHGLIIKLGFLYEEYVSASLITFYANCKRIGDSRKVFDEKVHEQVAVWTALLS 299

Query: 313 GLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGF 372
           G +L K  E+A+ +F+ M ++ +  ++ T  + L++C+  G +D G+++ G  V  K G 
Sbjct: 300 GYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNSCSALGTLDWGKEMHGVAV--KLGL 357

Query: 373 IPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVAR 432
             +      +V + + SG++ +A  V     F  +   W S++V     G  +++  +  
Sbjct: 358 ETDAFVGNSLVVMYSDSGNVNDAVSVF-IKIFKKSIVSWNSIIVGCAQHGRGKWAFVIFG 416

Query: 433 KLVEL--EP 439
           +++ L  EP
Sbjct: 417 QMIRLNKEP 425



 Score = 82.0 bits (201), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 109/233 (46%), Gaps = 20/233 (8%)

Query: 171 IYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQ 230
           + ++  ++  Y  S RL      LFDEM  RDVVSW  MI G    G  + A+  F++M 
Sbjct: 66  VSLYTKMITGYTRSNRLVDAL-NLFDEMPVRDVVSWNSMISGCVECGDMNTAVKLFDEMP 124

Query: 231 YAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL---DVVLGTALIDMYAKCG 287
              V  +   MVN    C  SG V       D   R  +++   D     +++  Y + G
Sbjct: 125 ERSVV-SWTAMVNG---CFRSGKV-------DQAERLFYQMPVKDTAAWNSMVHGYLQFG 173

Query: 288 RVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLS 347
           +V++ +++F  +  KNV +W  +I GL   +   EA+ LF  M +  +++       V++
Sbjct: 174 KVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCCIKSTSRPFTCVIT 233

Query: 348 ACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLA---RSGSLREAFE 397
           AC ++    MG Q+ G ++  K GF+      A ++   A   R G  R+ F+
Sbjct: 234 ACANAPAFHMGIQVHGLII--KLGFLYEEYVSASLITFYANCKRIGDSRKVFD 284


>AT5G13230.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:4222514-4224982 FORWARD
           LENGTH=822
          Length = 822

 Score =  223 bits (568), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 117/391 (29%), Positives = 219/391 (56%), Gaps = 5/391 (1%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P+  V  ++ +I  F  +   + ++    +F  M    ++PN +T   +    +     
Sbjct: 308 MPKNDVVPWSFMIARFCQNGFCNEAV---DLFIRMREAFVVPNEFTLSSILNGCAIGKCS 364

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMG 212
              + +H  V+K+G   DIYV N+L+ VYA   ++ +  + LF E++ ++ VSW  +I+G
Sbjct: 365 GLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVK-LFAELSSKNEVSWNTVIVG 423

Query: 213 FRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELD 272
           + N G+   A   F +     V+   VT  +AL ACA   ++++G  +H    +      
Sbjct: 424 YENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDLGVQVHGLAIKTNNAKK 483

Query: 273 VVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQ 332
           V +  +LIDMYAKCG ++    VF+ ++  +V +WNA+I G +    G +A+R+ + M+ 
Sbjct: 484 VAVSNSLIDMYAKCGDIKFAQSVFNEMETIDVASWNALISGYSTHGLGRQALRILDIMKD 543

Query: 333 DGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSL 392
              + + +T L VLS C+++GL+D G++ F  ++   +G  P ++HY CMV LL RSG L
Sbjct: 544 RDCKPNGLTFLGVLSGCSNAGLIDQGQECFESMIR-DHGIEPCLEHYTCMVRLLGRSGQL 602

Query: 393 REAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLY 452
            +A +++  +P++P+  +W ++L +S +Q + EF+   A +++++ P + A YV +SN+Y
Sbjct: 603 DKAMKLIEGIPYEPSVMIWRAMLSASMNQNNEEFARRSAEEILKINPKDEATYVLVSNMY 662

Query: 453 AEMGRWDDVEKVRGMMKDRQLTKDLGCSSVE 483
           A   +W +V  +R  MK+  + K+ G S +E
Sbjct: 663 AGAKQWANVASIRKSMKEMGVKKEPGLSWIE 693



 Score =  140 bits (353), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 159/328 (48%), Gaps = 13/328 (3%)

Query: 98  VFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQS 157
           + ++  ++  +  + +  +SL  LS    M     +PN+YTF    K+      F  A+ 
Sbjct: 212 IVVWAGIVSCYVENGYFEDSLKLLSC---MRMAGFMPNNYTFDTALKASIGLGAFDFAKG 268

Query: 158 VHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAG 217
           VH  +LK  ++ D  V   LL +Y     + S   ++F+EM   DVV W+ MI  F   G
Sbjct: 269 VHGQILKTCYVLDPRVGVGLLQLYTQLGDM-SDAFKVFNEMPKNDVVPWSFMIARFCQNG 327

Query: 218 KFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGT 277
             ++A+  F +M+ A V PN  T+ + L  CA      +G  +H  + + G++LD+ +  
Sbjct: 328 FCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYVSN 387

Query: 278 ALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRA 337
           ALID+YAKC +++  V++F+ +  KN  +WN VI G      G +A  +F    ++ V  
Sbjct: 388 ALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSV 447

Query: 338 DEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYAC---MVDLLARSGSLRE 394
            EVT  + L AC     +D+G Q+ G  ++       N K  A    ++D+ A+ G ++ 
Sbjct: 448 TEVTFSSALGACASLASMDLGVQVHGLAIKTN-----NAKKVAVSNSLIDMYAKCGDIKF 502

Query: 395 AFEVMRCMPFDPTKAMWGSLLVSSKSQG 422
           A  V   M      A W +L+    + G
Sbjct: 503 AQSVFNEMETIDV-ASWNALISGYSTHG 529



 Score =  109 bits (272), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 144/304 (47%), Gaps = 4/304 (1%)

Query: 120 PLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLG 179
           P+ +++ +HR     N + F    K   +         +H+ ++KLG+  + +V  +L+ 
Sbjct: 130 PIGLYSRLHREGHELNPHVFTSFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVGAALIN 189

Query: 180 VYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRV 239
            Y+    + S  R +F+ +  +D+V W  ++  +   G F+D+L     M+ AG  PN  
Sbjct: 190 AYSVCGSVDS-ARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNY 248

Query: 240 TMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSV 299
           T   AL A    GA +    +H  I +  + LD  +G  L+ +Y + G + +  +VF+ +
Sbjct: 249 TFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEM 308

Query: 300 KEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGR 359
            + +V  W+ +I          EA+ LF RM +  V  +E TL ++L+ C       +G 
Sbjct: 309 PKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCSGLGE 368

Query: 360 QIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSK 419
           Q+ G +V  K GF  ++     ++D+ A+   +  A ++   +     +  W +++V  +
Sbjct: 369 QLHGLVV--KVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELS-SKNEVSWNTVIVGYE 425

Query: 420 SQGD 423
           + G+
Sbjct: 426 NLGE 429



 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 108/249 (43%), Gaps = 7/249 (2%)

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFR 214
           A+++H  +LK G   D++  N LL  Y  +         LFDEM  R+ VS+  +  G+ 
Sbjct: 68  AKAIHCDILKKGSCLDLFATNILLNAYVKAG-FDKDALNLFDEMPERNNVSFVTLAQGY- 125

Query: 215 NAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVV 274
                 D +  + ++   G   N     + L         E+  W+H  I + G++ +  
Sbjct: 126 ---ACQDPIGLYSRLHREGHELNPHVFTSFLKLFVSLDKAEICPWLHSPIVKLGYDSNAF 182

Query: 275 LGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDG 334
           +G ALI+ Y+ CG V+    VF  +  K++  W  ++         E++++L + M   G
Sbjct: 183 VGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAG 242

Query: 335 VRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLRE 394
              +  T    L A    G  D  + + G +++  Y   P V     ++ L  + G + +
Sbjct: 243 FMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVG--VGLLQLYTQLGDMSD 300

Query: 395 AFEVMRCMP 403
           AF+V   MP
Sbjct: 301 AFKVFNEMP 309


>AT1G11290.1 | Symbols: CRR22 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:3791454-3793883 REVERSE
           LENGTH=809
          Length = 809

 Score =  223 bits (568), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 126/394 (31%), Positives = 212/394 (53%), Gaps = 5/394 (1%)

Query: 97  HVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQ 156
           +V  +NS+I A+     + N    + IF  M    + P   +      + +      + +
Sbjct: 301 NVVSWNSMIDAYVQ---NENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGR 357

Query: 157 SVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNA 216
            +H   ++LG   ++ V NSL+ +Y     +      +F ++  R +VSW  MI+GF   
Sbjct: 358 FIHKLSVELGLDRNVSVVNSLISMYCKCKEV-DTAASMFGKLQSRTLVSWNAMILGFAQN 416

Query: 217 GKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLG 276
           G+  DAL  F QM+   V P+  T V+ + A A+        WIH  + R+  + +V + 
Sbjct: 417 GRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVT 476

Query: 277 TALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVR 336
           TAL+DMYAKCG +     +F  + E++V TWNA+I G      G+ A+ LF  M++  ++
Sbjct: 477 TALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIK 536

Query: 337 ADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAF 396
            + VT L+V+SAC+HSGLV+ G + F ++++  Y    ++ HY  MVDLL R+G L EA+
Sbjct: 537 PNGVTFLSVISACSHSGLVEAGLKCF-YMMKENYSIELSMDHYGAMVDLLGRAGRLNEAW 595

Query: 397 EVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMG 456
           + +  MP  P   ++G++L + +   ++ F+E  A +L EL P +  Y+V L+N+Y    
Sbjct: 596 DFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAAS 655

Query: 457 RWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGHT 490
            W+ V +VR  M  + L K  GCS VE++ + H+
Sbjct: 656 MWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHS 689



 Score =  138 bits (347), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 143/294 (48%), Gaps = 15/294 (5%)

Query: 121 LSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGV 180
           L  F  M  + + P  Y F +L K           + +H  ++K G   D++    L  +
Sbjct: 120 LQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENM 179

Query: 181 YAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVT 240
           YA   R  +  R++FD M  RD+VSW  ++ G+   G    AL   + M    + P+ +T
Sbjct: 180 YAKC-RQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFIT 238

Query: 241 MVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVK 300
           +V+ L A +    + +G  IH +  R+G++  V + TAL+DMYAKCG +E   ++F  + 
Sbjct: 239 IVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGML 298

Query: 301 EKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQ 360
           E+NV +WN++I      ++ +EA+ +F +M  +GV+  +V+++  L AC   G ++ GR 
Sbjct: 299 ERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRF 358

Query: 361 IFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSL 414
           I    VE   G   NV     ++ +              +C   D   +M+G L
Sbjct: 359 IHKLSVE--LGLDRNVSVVNSLISMYC------------KCKEVDTAASMFGKL 398



 Score =  108 bits (269), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 136/290 (46%), Gaps = 9/290 (3%)

Query: 128 HRNTILPNHYTFP--FLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASP 185
            RN I  N Y  P   L +  S+     + + +   V K G   + +    L+ ++    
Sbjct: 27  ERNYIPANVYEHPAALLLERCSS---LKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYG 83

Query: 186 RLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNAL 245
            +    R +F+ +  +  V +  M+ GF      D AL  F +M+Y  V P        L
Sbjct: 84  SVDEAAR-VFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLL 142

Query: 246 AACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVF 305
             C D   + +G  IH  + ++G+ LD+   T L +MYAKC +V E  +VF  + E+++ 
Sbjct: 143 KVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLV 202

Query: 306 TWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFL 365
           +WN ++ G +       A+ +   M ++ ++   +T+++VL A +   L+ +G++I G+ 
Sbjct: 203 SWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYA 262

Query: 366 VEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLL 415
           +   +  + N+     +VD+ A+ GSL  A ++   M  +     W S++
Sbjct: 263 MRSGFDSLVNIS--TALVDMYAKCGSLETARQLFDGM-LERNVVSWNSMI 309


>AT2G22070.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr2:9383602-9385962 FORWARD LENGTH=786
          Length = 786

 Score =  223 bits (567), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 132/426 (30%), Positives = 216/426 (50%), Gaps = 38/426 (8%)

Query: 98  VFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTIL-PNHYTFPFLFKSLSAPCHFAQAQ 156
           +  +NS+I  F+   +    L  L IF+ M R+++L P+ +T   +  + +        +
Sbjct: 243 IVTWNSMISGFNQRGY---DLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGK 299

Query: 157 SVHAHVLKLGHLHDIYVHNSLLGVYA------ASPRLF---------------------- 188
            +H+H++  G      V N+L+ +Y+       + RL                       
Sbjct: 300 QIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIK 359

Query: 189 ----SLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNA 244
               +  + +F  +  RDVV+WT MI+G+   G + +A+  F  M   G  PN  T+   
Sbjct: 360 LGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAM 419

Query: 245 LAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVK-EKN 303
           L+  +   ++  G  IH    ++G    V +  ALI MYAK G +    R F  ++ E++
Sbjct: 420 LSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERD 479

Query: 304 VFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFG 363
             +W ++I  LA     EEA+ LF  M  +G+R D +T + V SAC H+GLV+ GRQ F 
Sbjct: 480 TVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFD 539

Query: 364 FLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGD 423
            + +     IP + HYACMVDL  R+G L+EA E +  MP +P    WGSLL + +   +
Sbjct: 540 MMKDVD-KIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKN 598

Query: 424 LEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVE 483
           ++  +  A +L+ LEP NS  Y  L+NLY+  G+W++  K+R  MKD ++ K+ G S +E
Sbjct: 599 IDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIE 658

Query: 484 VEEQGH 489
           V+ + H
Sbjct: 659 VKHKVH 664



 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 109/447 (24%), Positives = 188/447 (42%), Gaps = 78/447 (17%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P+     + ++I  + +   +H ++    +   M +  I P  +T   +  S++A    
Sbjct: 106 LPQRDSVSWTTMIVGYKNIGQYHKAI---RVMGDMVKEGIEPTQFTLTNVLASVAATRCM 162

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMG 212
              + VH+ ++KLG   ++ V NSLL +YA       + + +FD M  RD+ SW  MI  
Sbjct: 163 ETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPM-MAKFVFDRMVVRDISSWNAMIAL 221

Query: 213 FRNAGKFDDALLAFEQMQYAGV--------------------------------APNRVT 240
               G+ D A+  FEQM    +                                +P+R T
Sbjct: 222 HMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFT 281

Query: 241 MVNALAACADSGAVEMGAWIHDFIRRNGWELD-VVLG----------------------- 276
           + + L+ACA+   + +G  IH  I   G+++  +VL                        
Sbjct: 282 LASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRG 341

Query: 277 ---------TALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLF 327
                    TAL+D Y K G + +   +F S+K+++V  W A+I G     S  EAI LF
Sbjct: 342 TKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLF 401

Query: 328 NRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLA 387
             M   G R +  TL A+LS  +    +  G+QI G  V  K G I +V     ++ + A
Sbjct: 402 RSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAV--KSGEIYSVSVSNALITMYA 459

Query: 388 RSGSL---REAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFS-EFVARKLVELEPANSA 443
           ++G++     AF+++RC   +     W S++++    G  E + E     L+E    +  
Sbjct: 460 KAGNITSASRAFDLIRC---ERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHI 516

Query: 444 YYVHLSNLYAEMGRWDDVEKVRGMMKD 470
            YV + +     G  +   +   MMKD
Sbjct: 517 TYVGVFSACTHAGLVNQGRQYFDMMKD 543



 Score =  113 bits (282), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 146/321 (45%), Gaps = 72/321 (22%)

Query: 141 FLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASP------RLF------ 188
            L KS++       AQ VH  V+K G +  +Y+ N+L+ VY+ +       +LF      
Sbjct: 19  LLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLR 78

Query: 189 -------------------SLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQM 229
                              S C + FD++  RD VSWT MI+G++N G++  A+     M
Sbjct: 79  TAFSWNTVLSAYSKRGDMDSTC-EFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDM 137

Query: 230 QYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKC--- 286
              G+ P + T+ N LA+ A +  +E G  +H FI + G   +V +  +L++MYAKC   
Sbjct: 138 VKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDP 197

Query: 287 ----------------------------GRVEEGVRVFSSVKEKNVFTWNAVIKGLALAK 318
                                       G+++  +  F  + E+++ TWN++I G     
Sbjct: 198 MMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRG 257

Query: 319 SGEEAIRLFNRMEQDGVRA-DEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKY---GFIP 374
               A+ +F++M +D + + D  TL +VLSAC +   + +G+QI   +V   +   G + 
Sbjct: 258 YDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVL 317

Query: 375 NVKHYACMVDLLARSGSLREA 395
           N      ++ + +R G +  A
Sbjct: 318 N-----ALISMYSRCGGVETA 333


>AT1G03540.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:883782-885611 FORWARD
           LENGTH=609
          Length = 609

 Score =  223 bits (567), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 124/393 (31%), Positives = 211/393 (53%), Gaps = 11/393 (2%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNT-ILPNHYTFPFLFKSLSAPCH 151
           +P P V  + +++ AFS +  +  +L    +F  MHR   ++P+  TF  +  +      
Sbjct: 224 MPEPDVICWTAVLSAFSKNDLYEEAL---GLFYAMHRGKGLVPDGSTFGTVLTACGNLRR 280

Query: 152 FAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIM 211
             Q + +H  ++  G   ++ V +SLL +Y     +    RQ+F+ M+ ++ VSW+ ++ 
Sbjct: 281 LKQGKEIHGKLITNGIGSNVVVESSLLDMYGKCGSVRE-ARQVFNGMSKKNSVSWSALLG 339

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
           G+   G+ + A+  F +M+      +       L ACA   AV +G  IH    R G   
Sbjct: 340 GYCQNGEHEKAIEIFREME----EKDLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGCFG 395

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRME 331
           +V++ +ALID+Y K G ++   RV+S +  +N+ TWNA++  LA    GEEA+  FN M 
Sbjct: 396 NVIVESALIDLYGKSGCIDSASRVYSKMSIRNMITWNAMLSALAQNGRGEEAVSFFNDMV 455

Query: 332 QDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGS 391
           + G++ D ++ +A+L+AC H+G+VD GR  F  L+   YG  P  +HY+CM+DLL R+G 
Sbjct: 456 KKGIKPDYISFIAILTACGHTGMVDEGRNYF-VLMAKSYGIKPGTEHYSCMIDLLGRAGL 514

Query: 392 LREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDL-EFSEFVARKLVELEPANSAYYVHLSN 450
             EA  ++         ++WG LL    +  D    +E +A++++ELEP     YV LSN
Sbjct: 515 FEEAENLLERAECRNDASLWGVLLGPCAANADASRVAERIAKRMMELEPKYHMSYVLLSN 574

Query: 451 LYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVE 483
           +Y  +GR  D   +R +M  R + K +G S ++
Sbjct: 575 MYKAIGRHGDALNIRKLMVRRGVAKTVGQSWID 607



 Score =  118 bits (296), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 142/302 (47%), Gaps = 8/302 (2%)

Query: 140 PFLFKSLSAPCH----FAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLF 195
           P L+ SL   C+    F      HAHV+K G   D  V NSLL +Y          R++F
Sbjct: 61  PKLYASLLQTCNKVFSFIHGIQFHAHVVKSGLETDRNVGNSLLSLYFKLGPGMRETRRVF 120

Query: 196 DEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVE 255
           D    +D +SWT M+ G+    +   AL  F +M   G+  N  T+ +A+ AC++ G V 
Sbjct: 121 DGRFVKDAISWTSMMSGYVTGKEHVKALEVFVEMVSFGLDANEFTLSSAVKACSELGEVR 180

Query: 256 MGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLA 315
           +G   H  +  +G+E +  + + L  +Y       +  RVF  + E +V  W AV+   +
Sbjct: 181 LGRCFHGVVITHGFEWNHFISSTLAYLYGVNREPVDARRVFDEMPEPDVICWTAVLSAFS 240

Query: 316 LAKSGEEAIRLFNRMEQ-DGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIP 374
                EEA+ LF  M +  G+  D  T   VL+AC +   +  G++I G L+    G   
Sbjct: 241 KNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITNGIG--S 298

Query: 375 NVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKL 434
           NV   + ++D+  + GS+REA +V   M        W +LL      G+ E +  + R++
Sbjct: 299 NVVVESSLLDMYGKCGSVREARQVFNGMS-KKNSVSWSALLGGYCQNGEHEKAIEIFREM 357

Query: 435 VE 436
            E
Sbjct: 358 EE 359


>AT4G01030.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr4:448336-450642 REVERSE LENGTH=768
          Length = 768

 Score =  222 bits (566), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 128/465 (27%), Positives = 224/465 (48%), Gaps = 75/465 (16%)

Query: 95  RPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQ 154
           +P +  +NSL+  ++      +++   ++   M    + P+  +   L ++++ P H   
Sbjct: 187 KPDIVTWNSLLSGYASKGLSKDAI---AVLKRMQIAGLKPSTSSISSLLQAVAEPGHLKL 243

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFR 214
            +++H ++L+    +D+YV  +L+ +Y  +  L    R +FD M  +++V+W  ++ G  
Sbjct: 244 GKAIHGYILRNQLWYDVYVETTLIDMYIKTGYL-PYARMVFDMMDAKNIVAWNSLVSGLS 302

Query: 215 NA-----------------------------------GKFDDALLAFEQMQYAGVAPNRV 239
            A                                   GK + AL    +M+  GVAPN V
Sbjct: 303 YACLLKDAEALMIRMEKEGIKPDAITWNSLASGYATLGKPEKALDVIGKMKEKGVAPNVV 362

Query: 240 TMVNALAACADSG--------------------AVEM---------------GAWIHDFI 264
           +     + C+ +G                    A  M               G  +H F 
Sbjct: 363 SWTAIFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLLKILGCLSLLHSGKEVHGFC 422

Query: 265 RRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAI 324
            R     D  + TAL+DMY K G ++  + +F  +K K++ +WN ++ G A+   GEE I
Sbjct: 423 LRKNLICDAYVATALVDMYGKSGDLQSAIEIFWGIKNKSLASWNCMLMGYAMFGRGEEGI 482

Query: 325 RLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVD 384
             F+ M + G+  D +T  +VLS C +SGLV  G + F  L+  +YG IP ++H +CMVD
Sbjct: 483 AAFSVMLEAGMEPDAITFTSVLSVCKNSGLVQEGWKYFD-LMRSRYGIIPTIEHCSCMVD 541

Query: 385 LLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAY 444
           LL RSG L EA++ ++ M   P   +WG+ L S K   DLE +E   ++L  LEP NSA 
Sbjct: 542 LLGRSGYLDEAWDFIQTMSLKPDATIWGAFLSSCKIHRDLELAEIAWKRLQVLEPHNSAN 601

Query: 445 YVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
           Y+ + NLY+ + RW+DVE++R +M++ ++      S +++++  H
Sbjct: 602 YMMMINLYSNLNRWEDVERIRNLMRNNRVRVQDLWSWIQIDQTVH 646



 Score =  125 bits (315), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 166/361 (45%), Gaps = 44/361 (12%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P+     +N ++     S +   ++    +F  M  +       T   L +  S    F
Sbjct: 49  MPKRDDLAWNEIVMVNLRSGNWEKAV---ELFREMQFSGAKAYDSTMVKLLQVCSNKEGF 105

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHR----------- 201
           A+ + +H +VL+LG   ++ + NSL+ +Y+ + +L  L R++F+ M  R           
Sbjct: 106 AEGRQIHGYVLRLGLESNVSMCNSLIVMYSRNGKL-ELSRKVFNSMKDRNLSSWNSILSS 164

Query: 202 ------------------------DVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPN 237
                                   D+V+W  ++ G+ + G   DA+   ++MQ AG+ P+
Sbjct: 165 YTKLGYVDDAIGLLDEMEICGLKPDIVTWNSLLSGYASKGLSKDAIAVLKRMQIAGLKPS 224

Query: 238 RVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFS 297
             ++ + L A A+ G +++G  IH +I RN    DV + T LIDMY K G +     VF 
Sbjct: 225 TSSISSLLQAVAEPGHLKLGKAIHGYILRNQLWYDVYVETTLIDMYIKTGYLPYARMVFD 284

Query: 298 SVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDM 357
            +  KN+  WN+++ GL+ A   ++A  L  RME++G++ D +T  ++ S     G  + 
Sbjct: 285 MMDAKNIVAWNSLVSGLSYACLLKDAEALMIRMEKEGIKPDAITWNSLASGYATLGKPEK 344

Query: 358 GRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEV---MRCMPFDPTKAMWGSL 414
              + G + E   G  PNV  +  +    +++G+ R A +V   M+     P  A   +L
Sbjct: 345 ALDVIGKMKEK--GVAPNVVSWTAIFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTL 402

Query: 415 L 415
           L
Sbjct: 403 L 403



 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/369 (23%), Positives = 168/369 (45%), Gaps = 49/369 (13%)

Query: 157 SVHAHVLKLG-HLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRN 215
           ++H  ++K G    D  V ++ +G Y     L     +LFDEM  RD ++W  ++M    
Sbjct: 8   TIHGGLIKRGLDNSDTRVVSASMGFYGRCVSL-GFANKLFDEMPKRDDLAWNEIVMVNLR 66

Query: 216 AGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVL 275
           +G ++ A+  F +MQ++G      TMV  L  C++      G  IH ++ R G E +V +
Sbjct: 67  SGNWEKAVELFREMQFSGAKAYDSTMVKLLQVCSNKEGFAEGRQIHGYVLRLGLESNVSM 126

Query: 276 GTALIDMYAKCGRVEEGVRVFSSVKEKN-------------------------------- 303
             +LI MY++ G++E   +VF+S+K++N                                
Sbjct: 127 CNSLIVMYSRNGKLELSRKVFNSMKDRNLSSWNSILSSYTKLGYVDDAIGLLDEMEICGL 186

Query: 304 ---VFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQ 360
              + TWN+++ G A     ++AI +  RM+  G++    ++ ++L A    G + +G+ 
Sbjct: 187 KPDIVTWNSLLSGYASKGLSKDAIAVLKRMQIAGLKPSTSSISSLLQAVAEPGHLKLGKA 246

Query: 361 IFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKS 420
           I G+++  +  +  +V     ++D+  ++G L  A  V   M      A W SL+     
Sbjct: 247 IHGYILRNQLWY--DVYVETTLIDMYIKTGYLPYARMVFDMMDAKNIVA-WNSLVSGLSY 303

Query: 421 QGDLEFSE-FVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDL-- 477
              L+ +E  + R   E    ++  +  L++ YA +G+ +    V G MK++ +  ++  
Sbjct: 304 ACLLKDAEALMIRMEKEGIKPDAITWNSLASGYATLGKPEKALDVIGKMKEKGVAPNVVS 363

Query: 478 ------GCS 480
                 GCS
Sbjct: 364 WTAIFSGCS 372



 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 81/168 (48%), Gaps = 4/168 (2%)

Query: 256 MGAWIHD-FIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGL 314
           +G  IH   I+R     D  + +A +  Y +C  +    ++F  + +++   WN ++   
Sbjct: 5   LGLTIHGGLIKRGLDNSDTRVVSASMGFYGRCVSLGFANKLFDEMPKRDDLAWNEIVMVN 64

Query: 315 ALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIP 374
             + + E+A+ LF  M+  G +A + T++ +L  C++      GRQI G+++  + G   
Sbjct: 65  LRSGNWEKAVELFREMQFSGAKAYDSTMVKLLQVCSNKEGFAEGRQIHGYVL--RLGLES 122

Query: 375 NVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQG 422
           NV     ++ + +R+G L  + +V   M  D   + W S+L S    G
Sbjct: 123 NVSMCNSLIVMYSRNGKLELSRKVFNSMK-DRNLSSWNSILSSYTKLG 169


>AT2G41080.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:17132857-17134554 FORWARD
           LENGTH=565
          Length = 565

 Score =  222 bits (566), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 206/370 (55%), Gaps = 3/370 (0%)

Query: 121 LSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGV 180
           LS+F  MH     P+ YT   +F   +     +  Q +H + +K G   D+ V++SL  +
Sbjct: 76  LSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHM 135

Query: 181 YAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVT 240
           Y  + +L      +   M  R++V+W  +IMG    G  +  L  ++ M+ +G  PN++T
Sbjct: 136 YMRNGKLQD-GEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKIT 194

Query: 241 MVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVK 300
            V  L++C+D      G  IH    + G    V + ++LI MY+KCG + +  + FS  +
Sbjct: 195 FVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSERE 254

Query: 301 EKNVFTWNAVIKGLALAKSGEEAIRLFNRM-EQDGVRADEVTLLAVLSACNHSGLVDMGR 359
           +++   W+++I        G+EAI LFN M EQ  +  +EV  L +L AC+HSGL D G 
Sbjct: 255 DEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGL 314

Query: 360 QIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSK 419
           ++F  +VE KYGF P +KHY C+VDLL R+G L +A  ++R MP      +W +LL +  
Sbjct: 315 ELFDMMVE-KYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACN 373

Query: 420 SQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGC 479
              + E ++ V +++++++P +SA YV L+N++A   RW DV +VR  M+D+ + K+ G 
Sbjct: 374 IHKNAEMAQRVFKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGI 433

Query: 480 SSVEVEEQGH 489
           S  E + + H
Sbjct: 434 SWFEHKGEVH 443



 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 134/274 (48%), Gaps = 10/274 (3%)

Query: 152 FAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIM 211
           F  A +V+  + K  ++      N L+  Y  +  L +  R++FDEM  R + +W  MI 
Sbjct: 10  FPSAVAVYGRMRKKNYMSS----NILINGYVRAGDLVN-ARKVFDEMPDRKLTTWNAMIA 64

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
           G       ++ L  F +M   G +P+  T+ +  +  A   +V +G  IH +  + G EL
Sbjct: 65  GLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLEL 124

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRME 331
           D+V+ ++L  MY + G++++G  V  S+  +N+  WN +I G A     E  + L+  M+
Sbjct: 125 DLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMK 184

Query: 332 QDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGS 391
             G R +++T + VLS+C+   +   G+QI    +  K G    V   + ++ + ++ G 
Sbjct: 185 ISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAI--KIGASSVVAVVSSLISMYSKCGC 242

Query: 392 LREAFEVMRCMPFDPTKAMWGSLLVSSK--SQGD 423
           L +A +       D  + MW S++ +     QGD
Sbjct: 243 LGDAAKAFSERE-DEDEVMWSSMISAYGFHGQGD 275



 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 126/289 (43%), Gaps = 16/289 (5%)

Query: 51  QQIQAQLILHNLQ----SNPTIAHHFITVCQSHXXXXXXXXXXXXXVPRPHVFIFNSLIR 106
           QQI    I + L+     N ++AH ++                   +P  ++  +N+LI 
Sbjct: 111 QQIHGYTIKYGLELDLVVNSSLAHMYM-----RNGKLQDGEIVIRSMPVRNLVAWNTLIM 165

Query: 107 AFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLG 166
             + +       T L ++  M  +   PN  TF  +  S S      Q Q +HA  +K+G
Sbjct: 166 GNAQNGCPE---TVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIG 222

Query: 167 HLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAF 226
               + V +SL+ +Y+    L    +  F E    D V W+ MI  +   G+ D+A+  F
Sbjct: 223 ASSVVAVVSSLISMYSKCGCLGDAAKA-FSEREDEDEVMWSSMISAYGFHGQGDEAIELF 281

Query: 227 EQM-QYAGVAPNRVTMVNALAACADSGAVEMGAWIHD-FIRRNGWELDVVLGTALIDMYA 284
             M +   +  N V  +N L AC+ SG  + G  + D  + + G++  +   T ++D+  
Sbjct: 282 NTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLG 341

Query: 285 KCGRVEEGVRVFSSVKEK-NVFTWNAVIKGLALAKSGEEAIRLFNRMEQ 332
           + G +++   +  S+  K ++  W  ++    + K+ E A R+F  + Q
Sbjct: 342 RAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQ 390


>AT1G26900.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:9319756-9321474 REVERSE
           LENGTH=572
          Length = 572

 Score =  222 bits (566), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 126/371 (33%), Positives = 205/371 (55%), Gaps = 14/371 (3%)

Query: 120 PLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLG 179
            L +F  M ++ ++ N  T      ++S     + A+S H   +K+G   D+++  +L+G
Sbjct: 211 ALDLFRIMRKSEVVVNVSTLLSFLSAISDLGDLSGAESAHVLCIKIGLDLDLHLITALIG 270

Query: 180 VYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRV 239
           +Y  +  + S  R++FD    +DVV+W  MI  +   G  ++ +    QM+Y  + PN  
Sbjct: 271 MYGKTGGISS-ARRIFDCAIRKDVVTWNCMIDQYAKTGLLEECVWLLRQMKYEKMKPNSS 329

Query: 240 TMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSV 299
           T V  L++CA S A  +G  + D +      LD +LGTAL+DMYAK G +E+ V +F+ +
Sbjct: 330 TFVGLLSSCAYSEAAFVGRTVADLLEEERIALDAILGTALVDMYAKVGLLEKAVEIFNRM 389

Query: 300 KEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDG--VRADEVTLLAVLSACNHSGLVDM 357
           K+K+V +W A+I G        EA+ LFN+ME++   VR +E+T L VL+AC+H GLV  
Sbjct: 390 KDKDVKSWTAMISGYGAHGLAREAVTLFNKMEEENCKVRPNEITFLVVLNACSHGGLVME 449

Query: 358 GRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVS 417
           G + F  +VE  Y F P V+HY C+VDLL R+G L EA+E++R +P       W +LL +
Sbjct: 450 GIRCFKRMVEA-YSFTPKVEHYGCVVDLLGRAGQLEEAYELIRNLPITSDSTAWRALLAA 508

Query: 418 SKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWD---DVEKVRGMMKDRQLT 474
            +  G+ +  E V  +L E+   + A  + L+  +A  G  +   D E  +G        
Sbjct: 509 CRVYGNADLGESVMMRLAEMGETHPADAILLAGTHAVAGNPEKSLDNELNKG-------R 561

Query: 475 KDLGCSSVEVE 485
           K+ G S++E+E
Sbjct: 562 KEAGYSAIEIE 572



 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 158/331 (47%), Gaps = 8/331 (2%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           V   ++F+FN++IR +S S     +    S+F  +    +  + ++F    KS S     
Sbjct: 85  VSNTNLFMFNTMIRGYSISDEPERAF---SVFNQLRAKGLTLDRFSFITTLKSCSRELCV 141

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHR-DVVSWTVMIM 211
           +  + +H   L+ G +    + N+L+  Y    ++ S  R++FDEM    D V+++ ++ 
Sbjct: 142 SIGEGLHGIALRSGFMVFTDLRNALIHFYCVCGKI-SDARKVFDEMPQSVDAVTFSTLMN 200

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
           G+    K   AL  F  M+ + V  N  T+++ L+A +D G +      H    + G +L
Sbjct: 201 GYLQVSKKALALDLFRIMRKSEVVVNVSTLLSFLSAISDLGDLSGAESAHVLCIKIGLDL 260

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRME 331
           D+ L TALI MY K G +    R+F     K+V TWN +I   A     EE + L  +M+
Sbjct: 261 DLHLITALIGMYGKTGGISSARRIFDCAIRKDVVTWNCMIDQYAKTGLLEECVWLLRQMK 320

Query: 332 QDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGS 391
            + ++ +  T + +LS+C +S    +GR +   L E +     +      +VD+ A+ G 
Sbjct: 321 YEKMKPNSSTFVGLLSSCAYSEAAFVGRTVADLLEEERIAL--DAILGTALVDMYAKVGL 378

Query: 392 LREAFEVMRCMPFDPTKAMWGSLLVSSKSQG 422
           L +A E+   M     K+ W +++    + G
Sbjct: 379 LEKAVEIFNRMKDKDVKS-WTAMISGYGAHG 408



 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/355 (21%), Positives = 156/355 (43%), Gaps = 38/355 (10%)

Query: 154 QAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGF 213
           +   +H +++K G   D +  + LL   +     ++    +F+ +++ ++  +  MI G+
Sbjct: 43  EVSRIHGYMVKTGLDKDDFAVSKLLAFSSVLDIRYA--SSIFEHVSNTNLFMFNTMIRGY 100

Query: 214 RNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDV 273
             + + + A   F Q++  G+  +R + +  L +C+    V +G  +H    R+G+ +  
Sbjct: 101 SISDEPERAFSVFNQLRAKGLTLDRFSFITTLKSCSRELCVSIGEGLHGIALRSGFMVFT 160

Query: 274 VLGTALIDMYAKCGRVEEGVRVFSSVKEK-NVFTWNAVIKGLALAKSGEEAIRLFNRMEQ 332
            L  ALI  Y  CG++ +  +VF  + +  +  T++ ++ G         A+ LF  M +
Sbjct: 161 DLRNALIHFYCVCGKISDARKVFDEMPQSVDAVTFSTLMNGYLQVSKKALALDLFRIMRK 220

Query: 333 DGVRADEVTLLAVLSA----------------CNHSGLVDMGRQIFGFLVE--GKYGFIP 374
             V  +  TLL+ LSA                C   GL D+   +   L+   GK G I 
Sbjct: 221 SEVVVNVSTLLSFLSAISDLGDLSGAESAHVLCIKIGL-DLDLHLITALIGMYGKTGGIS 279

Query: 375 NVKH------------YACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSL--LVSSKS 420
           + +             + CM+D  A++G L E   ++R M ++  K    +   L+SS +
Sbjct: 280 SARRIFDCAIRKDVVTWNCMIDQYAKTGLLEECVWLLRQMKYEKMKPNSSTFVGLLSSCA 339

Query: 421 QGDLEFSEFVARKLVELE--PANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQL 473
             +  F       L+E E    ++     L ++YA++G  +   ++   MKD+ +
Sbjct: 340 YSEAAFVGRTVADLLEEERIALDAILGTALVDMYAKVGLLEKAVEIFNRMKDKDV 394


>AT5G27110.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:9538572-9540647 REVERSE
           LENGTH=691
          Length = 691

 Score =  221 bits (562), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 137/402 (34%), Positives = 217/402 (53%), Gaps = 18/402 (4%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +PR  +  +NS+I+ +       +S + + I   M      P+  T   +  + S   + 
Sbjct: 269 MPRKSLVAWNSMIKGYVA---KGDSKSCVEILNRMIIEGTRPSQTTLTSILMACSRSRNL 325

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVV-SWTVMIM 211
              + +H +V++     DIYV+ SL+ +Y       +L   +F + T +DV  SW VMI 
Sbjct: 326 LHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEA-NLAETVFSK-TQKDVAESWNVMIS 383

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
            + + G +  A+  ++QM   GV P+ VT  + L AC+   A+E G  IH  I  +  E 
Sbjct: 384 SYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLET 443

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRME 331
           D +L +AL+DMY+KCG  +E  R+F+S+ +K+V +W  +I          EA+  F+ M+
Sbjct: 444 DELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREALYQFDEMQ 503

Query: 332 QDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGS 391
           + G++ D VTLLAVLSAC H+GL+D G + F  +   KYG  P ++HY+CM+D+L R+G 
Sbjct: 504 KFGLKPDGVTLLAVLSACGHAGLIDEGLKFFSQM-RSKYGIEPIIEHYSCMIDILGRAGR 562

Query: 392 LREAFEVMRCMPFDPTKAMWGSLLVSS------KSQGDLEFSEFVARKLVELEPANSAYY 445
           L EA+E+++  P     A   S L S+       S GD      +AR LVE  P +++ Y
Sbjct: 563 LLEAYEIIQQTPETSDNAELLSTLFSACCLHLEHSLGDR-----IARLLVENYPDDASTY 617

Query: 446 VHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQ 487
           + L NLYA    WD   +VR  MK+  L K  GCS +E+ ++
Sbjct: 618 MVLFNLYASGESWDAARRVRLKMKEMGLRKKPGCSWIEMSDK 659



 Score =  167 bits (422), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 104/332 (31%), Positives = 175/332 (52%), Gaps = 12/332 (3%)

Query: 95  RPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTI-LPNHYTFPFLFKSLSAPCHFA 153
           R  V+I+NSL+  +S +   H++L    +F  +   +I +P+ +TFP + K+  A     
Sbjct: 68  RSDVYIWNSLMSGYSKNSMFHDTL---EVFKRLLNCSICVPDSFTFPNVIKAYGALGREF 124

Query: 154 QAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGF 213
             + +H  V+K G++ D+ V +SL+G+YA    LF    Q+FDEM  RDV SW  +I  F
Sbjct: 125 LGRMIHTLVVKSGYVCDVVVASSLVGMYAKF-NLFENSLQVFDEMPERDVASWNTVISCF 183

Query: 214 RNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDV 273
             +G+ + AL  F +M+ +G  PN V++  A++AC+    +E G  IH    + G+ELD 
Sbjct: 184 YQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDE 243

Query: 274 VLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQD 333
            + +AL+DMY KC  +E    VF  +  K++  WN++IKG       +  + + NRM  +
Sbjct: 244 YVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIE 303

Query: 334 GVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYA--CMVDLLARSGS 391
           G R  + TL ++L AC+ S  +  G+ I G+++      + N   Y    ++DL  + G 
Sbjct: 304 GTRPSQTTLTSILMACSRSRNLLHGKFIHGYVIRS----VVNADIYVNCSLIDLYFKCGE 359

Query: 392 LREAFEVMRCMPFDPTKAMWGSLLVSSKSQGD 423
              A  V      D  ++ W  ++ S  S G+
Sbjct: 360 ANLAETVFSKTQKDVAES-WNVMISSYISVGN 390



 Score =  128 bits (321), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 149/311 (47%), Gaps = 6/311 (1%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P   V  +N++I  F  S     +L    +F  M  +   PN  +      + S     
Sbjct: 168 MPERDVASWNTVISCFYQSGEAEKAL---ELFGRMESSGFEPNSVSLTVAISACSRLLWL 224

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMG 212
            + + +H   +K G   D YV+++L+ +Y     L  + R++F +M  + +V+W  MI G
Sbjct: 225 ERGKEIHRKCVKKGFELDEYVNSALVDMYGKCDCL-EVAREVFQKMPRKSLVAWNSMIKG 283

Query: 213 FRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELD 272
           +   G     +    +M   G  P++ T+ + L AC+ S  +  G +IH ++ R+    D
Sbjct: 284 YVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFIHGYVIRSVVNAD 343

Query: 273 VVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQ 332
           + +  +LID+Y KCG       VFS  ++    +WN +I       +  +A+ ++++M  
Sbjct: 344 IYVNCSLIDLYFKCGEANLAETVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMVS 403

Query: 333 DGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSL 392
            GV+ D VT  +VL AC+    ++ G+QI   + E +     +    + ++D+ ++ G+ 
Sbjct: 404 VGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISESR--LETDELLLSALLDMYSKCGNE 461

Query: 393 REAFEVMRCMP 403
           +EAF +   +P
Sbjct: 462 KEAFRIFNSIP 472



 Score =  119 bits (297), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 83/282 (29%), Positives = 138/282 (48%), Gaps = 7/282 (2%)

Query: 158 VHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHR-DVVSWTVMIMGFRNA 216
           VH  +L LG   D+ +  SL+ VY       S  R +F+    R DV  W  ++ G+   
Sbjct: 26  VHQRILTLGLRRDVVLCKSLINVYFTCKDHCS-ARHVFENFDIRSDVYIWNSLMSGYSKN 84

Query: 217 GKFDDALLAFEQMQYAGV-APNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVL 275
             F D L  F+++    +  P+  T  N + A    G   +G  IH  + ++G+  DVV+
Sbjct: 85  SMFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGALGREFLGRMIHTLVVKSGYVCDVVV 144

Query: 276 GTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGV 335
            ++L+ MYAK    E  ++VF  + E++V +WN VI     +   E+A+ LF RME  G 
Sbjct: 145 ASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQSGEAEKALELFGRMESSGF 204

Query: 336 RADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREA 395
             + V+L   +SAC+    ++ G++I    V  K GF  +    + +VD+  +   L  A
Sbjct: 205 EPNSVSLTVAISACSRLLWLERGKEIHRKCV--KKGFELDEYVNSALVDMYGKCDCLEVA 262

Query: 396 FEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFS-EFVARKLVE 436
            EV + MP     A W S++    ++GD +   E + R ++E
Sbjct: 263 REVFQKMPRKSLVA-WNSMIKGYVAKGDSKSCVEILNRMIIE 303


>AT1G69350.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:26069882-26072245 FORWARD
           LENGTH=787
          Length = 787

 Score =  221 bits (562), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 123/395 (31%), Positives = 216/395 (54%), Gaps = 8/395 (2%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           V   ++  +NSLI  ++H       +  L +F  M    I P+ +T      +       
Sbjct: 365 VSDRNIVAWNSLISLYAH---RGMVIQALGLFRQMVTQRIKPDAFTLASSISACENAGLV 421

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMG 212
              + +H HV++   + D +V NSL+ +Y+ S  + S    +F+++ HR VV+W  M+ G
Sbjct: 422 PLGKQIHGHVIRT-DVSDEFVQNSLIDMYSKSGSVDS-ASTVFNQIKHRSVVTWNSMLCG 479

Query: 213 FRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELD 272
           F   G   +A+  F+ M ++ +  N VT +  + AC+  G++E G W+H  +  +G + D
Sbjct: 480 FSQNGNSVEAISLFDYMYHSYLEMNEVTFLAVIQACSSIGSLEKGKWVHHKLIISGLK-D 538

Query: 273 VVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQ 332
           +   TALIDMYAKCG +     VF ++  +++ +W+++I    +      AI  FN+M +
Sbjct: 539 LFTDTALIDMYAKCGDLNAAETVFRAMSSRSIVSWSSMINAYGMHGRIGSAISTFNQMVE 598

Query: 333 DGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSL 392
            G + +EV  + VLSAC HSG V+ G+  F  +    +G  PN +H+AC +DLL+RSG L
Sbjct: 599 SGTKPNEVVFMNVLSACGHSGSVEEGKYYFNLM--KSFGVSPNSEHFACFIDLLSRSGDL 656

Query: 393 REAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLY 452
           +EA+  ++ MPF    ++WGSL+   +    ++  + +   L ++   ++ YY  LSN+Y
Sbjct: 657 KEAYRTIKEMPFLADASVWGSLVNGCRIHQKMDIIKAIKNDLSDIVTDDTGYYTLLSNIY 716

Query: 453 AEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQ 487
           AE G W++  ++R  MK   L K  G S++E++++
Sbjct: 717 AEEGEWEEFRRLRSAMKSSNLKKVPGYSAIEIDQK 751



 Score =  148 bits (374), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 161/324 (49%), Gaps = 9/324 (2%)

Query: 94  PRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPC-HF 152
           P P  F++  LI+     H        + ++  +   T   + + FP + ++ +    H 
Sbjct: 61  PYPDSFMYGVLIKCNVWCHLLD---AAIDLYHRLVSETTQISKFVFPSVLRACAGSREHL 117

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMG 212
           +    VH  ++K G   D  +  SLL +Y  +  L S   ++FD M  RD+V+W+ ++  
Sbjct: 118 SVGGKVHGRIIKGGVDDDAVIETSLLCMYGQTGNL-SDAEKVFDGMPVRDLVAWSTLVSS 176

Query: 213 FRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELD 272
               G+   AL  F+ M   GV P+ VTM++ +  CA+ G + +   +H  I R  ++LD
Sbjct: 177 CLENGEVVKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHGQITRKMFDLD 236

Query: 273 VVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQ 332
             L  +L+ MY+KCG +    R+F  + +KN  +W A+I      +  E+A+R F+ M +
Sbjct: 237 ETLCNSLLTMYSKCGDLLSSERIFEKIAKKNAVSWTAMISSYNRGEFSEKALRSFSEMIK 296

Query: 333 DGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYA-CMVDLLARSGS 391
            G+  + VTL +VLS+C   GL+  G+ + GF V  +    PN +  +  +V+L A  G 
Sbjct: 297 SGIEPNLVTLYSVLSSCGLIGLIREGKSVHGFAV--RRELDPNYESLSLALVELYAECGK 354

Query: 392 LREAFEVMRCMPFDPTKAMWGSLL 415
           L +   V+R +  D     W SL+
Sbjct: 355 LSDCETVLRVVS-DRNIVAWNSLI 377



 Score =  127 bits (320), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 160/313 (51%), Gaps = 18/313 (5%)

Query: 118 LTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSL 177
           +  L +F  M  + + P+  T   + +  +       A+SVH  + +     D  + NSL
Sbjct: 184 VKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHGQITRKMFDLDETLCNSL 243

Query: 178 LGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDD-ALLAFEQMQYAGVAP 236
           L +Y+    L S   ++F+++  ++ VSWT MI  + N G+F + AL +F +M  +G+ P
Sbjct: 244 LTMYSKCGDLLS-SERIFEKIAKKNAVSWTAMISSY-NRGEFSEKALRSFSEMIKSGIEP 301

Query: 237 NRVTMVNALAACADSGAVEMGAWIHDF-IRRNGWELDV---VLGTALIDMYAKCGRVEEG 292
           N VT+ + L++C   G +  G  +H F +RR   ELD     L  AL+++YA+CG++ + 
Sbjct: 302 NLVTLYSVLSSCGLIGLIREGKSVHGFAVRR---ELDPNYESLSLALVELYAECGKLSDC 358

Query: 293 VRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHS 352
             V   V ++N+  WN++I   A      +A+ LF +M    ++ D  TL + +SAC ++
Sbjct: 359 ETVLRVVSDRNIVAWNSLISLYAHRGMVIQALGLFRQMVTQRIKPDAFTLASSISACENA 418

Query: 353 GLVDMGRQIFGFLVEGKYG--FIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAM 410
           GLV +G+QI G ++       F+ N      ++D+ ++SGS+  A  V   +        
Sbjct: 419 GLVPLGKQIHGHVIRTDVSDEFVQN-----SLIDMYSKSGSVDSASTVFNQIKHRSV-VT 472

Query: 411 WGSLLVSSKSQGD 423
           W S+L      G+
Sbjct: 473 WNSMLCGFSQNGN 485


>AT1G04840.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:1362867-1364962 REVERSE
           LENGTH=665
          Length = 665

 Score =  220 bits (561), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 118/313 (37%), Positives = 181/313 (57%), Gaps = 2/313 (0%)

Query: 175 NSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGV 234
           ++L+  Y  S  L +  +QLF+ M  ++VVSWT +I GF   G ++ A+  + +M   G+
Sbjct: 231 STLIKGYVDSGEL-NRAKQLFELMPEKNVVSWTTLINGFSQTGDYETAISTYFEMLEKGL 289

Query: 235 APNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVR 294
            PN  T+   L+AC+ SGA+  G  IH +I  NG +LD  +GTAL+DMYAKCG ++    
Sbjct: 290 KPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKCGELDCAAT 349

Query: 295 VFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGL 354
           VFS++  K++ +W A+I+G A+     +AI+ F +M   G + DEV  LAVL+AC +S  
Sbjct: 350 VFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFLAVLTACLNSSE 409

Query: 355 VDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSL 414
           VD+G   F  +    Y   P +KHY  +VDLL R+G L EA E++  MP +P    W +L
Sbjct: 410 VDLGLNFFDSM-RLDYAIEPTLKHYVLVVDLLGRAGKLNEAHELVENMPINPDLTTWAAL 468

Query: 415 LVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLT 474
             + K+      +E V++ L+EL+P     Y+ L   +A  G   DVEK R  ++ R   
Sbjct: 469 YRACKAHKGYRRAESVSQNLLELDPELCGSYIFLDKTHASKGNIQDVEKRRLSLQKRIKE 528

Query: 475 KDLGCSSVEVEEQ 487
           + LG S +E++ Q
Sbjct: 529 RSLGWSYIELDGQ 541



 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 104/228 (45%), Gaps = 16/228 (7%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P  +V  + +LI  FS +  +    T +S +  M    + PN YT   +  + S     
Sbjct: 253 MPEKNVVSWTTLINGFSQTGDYE---TAISTYFEMLEKGLKPNEYTIAAVLSACSKSGAL 309

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMG 212
                +H ++L  G   D  +  +L+ +YA    L      +F  M H+D++SWT MI G
Sbjct: 310 GSGIRIHGYILDNGIKLDRAIGTALVDMYAKCGEL-DCAATVFSNMNHKDILSWTAMIQG 368

Query: 213 FRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELD 272
           +   G+F  A+  F QM Y+G  P+ V  +  L AC +S  V++G    D +R     LD
Sbjct: 369 WAVHGRFHQAIQCFRQMMYSGEKPDEVVFLAVLTACLNSSEVDLGLNFFDSMR-----LD 423

Query: 273 VVLGTAL------IDMYAKCGRVEEGVRVFSSVK-EKNVFTWNAVIKG 313
             +   L      +D+  + G++ E   +  ++    ++ TW A+ + 
Sbjct: 424 YAIEPTLKHYVLVVDLLGRAGKLNEAHELVENMPINPDLTTWAALYRA 471



 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 116/264 (43%), Gaps = 27/264 (10%)

Query: 143 FKSLSAPCH-FAQAQSVHAHVLKLGHLH-----DIYVHNSLLGVYAASPRLFSLCRQLFD 196
           F SL   C   A  + VHA +L+ G L       +   +SLL     SP  +SL   +F 
Sbjct: 32  FISLIHACKDTASLRHVHAQILRRGVLSSRVAAQLVSCSSLL----KSPD-YSL--SIFR 84

Query: 197 EMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEM 256
               R+      +I G     +F+ ++  F  M   GV P+R+T    L + +  G   +
Sbjct: 85  NSEERNPFVLNALIRGLTENARFESSVRHFILMLRLGVKPDRLTFPFVLKSNSKLGFRWL 144

Query: 257 GAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSS----VKEKNVFTWNAVIK 312
           G  +H    +N  + D  +  +L+DMYAK G+++   +VF      +K++++  WN +I 
Sbjct: 145 GRALHAATLKNFVDCDSFVRLSLVDMYAKTGQLKHAFQVFEESPDRIKKESILIWNVLIN 204

Query: 313 GLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGF 372
           G   AK    A  LF  M +     +  +   ++     SG ++  +Q+F  + E     
Sbjct: 205 GYCRAKDMHMATTLFRSMPE----RNSGSWSTLIKGYVDSGELNRAKQLFELMPE----- 255

Query: 373 IPNVKHYACMVDLLARSGSLREAF 396
             NV  +  +++  +++G    A 
Sbjct: 256 -KNVVSWTTLINGFSQTGDYETAI 278



 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 109/246 (44%), Gaps = 20/246 (8%)

Query: 235 APNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRV----E 290
           +P+    ++ + AC D+ ++     +H  I R G     VL + +      C  +    +
Sbjct: 26  SPDESHFISLIHACKDTASLRH---VHAQILRRG-----VLSSRVAAQLVSCSSLLKSPD 77

Query: 291 EGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACN 350
             + +F + +E+N F  NA+I+GL      E ++R F  M + GV+ D +T   VL + +
Sbjct: 78  YSLSIFRNSEERNPFVLNALIRGLTENARFESSVRHFILMLRLGVKPDRLTFPFVLKSNS 137

Query: 351 HSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKA- 409
             G   +GR +    ++        V+    +VD+ A++G L+ AF+V    P    K  
Sbjct: 138 KLGFRWLGRALHAATLKNFVDCDSFVR--LSLVDMYAKTGQLKHAFQVFEESPDRIKKES 195

Query: 410 --MWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGM 467
             +W  L+       D+  +  + R + E    NS  +  L   Y + G  +  +++  +
Sbjct: 196 ILIWNVLINGYCRAKDMHMATTLFRSMPE---RNSGSWSTLIKGYVDSGELNRAKQLFEL 252

Query: 468 MKDRQL 473
           M ++ +
Sbjct: 253 MPEKNV 258


>AT2G37310.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:15665102-15667075 REVERSE
           LENGTH=657
          Length = 657

 Score =  220 bits (561), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 135/420 (32%), Positives = 212/420 (50%), Gaps = 35/420 (8%)

Query: 98  VFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQS 157
           V  +NS+I  +S S    +        A +  +   PN  T   +F++            
Sbjct: 198 VVSWNSMISGYSQSGSFEDCKKMYK--AMLACSDFKPNGVTVISVFQACGQSSDLIFGLE 255

Query: 158 VHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAG 217
           VH  +++     D+ + N+++G YA    L    R LFDEM+ +D V++  +I G+   G
Sbjct: 256 VHKKMIENHIQMDLSLCNAVIGFYAKCGSL-DYARALFDEMSEKDSVTYGAIISGYMAHG 314

Query: 218 KFDDALLAFEQMQYAGVA-------------------------------PNRVTMVNALA 246
              +A+  F +M+  G++                               PN VT+ + L 
Sbjct: 315 LVKEAMALFSEMESIGLSTWNAMISGLMQNNHHEEVINSFREMIRCGSRPNTVTLSSLLP 374

Query: 247 ACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFT 306
           +   S  ++ G  IH F  RNG + ++ + T++ID YAK G +    RVF + K++++  
Sbjct: 375 SLTYSSNLKGGKEIHAFAIRNGADNNIYVTTSIIDNYAKLGFLLGAQRVFDNCKDRSLIA 434

Query: 307 WNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLV 366
           W A+I   A+    + A  LF++M+  G + D+VTL AVLSA  HSG  DM + IF  ++
Sbjct: 435 WTAIITAYAVHGDSDSACSLFDQMQCLGTKPDDVTLTAVLSAFAHSGDSDMAQHIFDSML 494

Query: 367 EGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEF 426
             KY   P V+HYACMV +L+R+G L +A E +  MP DP   +WG+LL  +   GDLE 
Sbjct: 495 T-KYDIEPGVEHYACMVSVLSRAGKLSDAMEFISKMPIDPIAKVWGALLNGASVLGDLEI 553

Query: 427 SEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEE 486
           + F   +L E+EP N+  Y  ++NLY + GRW++ E VR  MK   L K  G S +E E+
Sbjct: 554 ARFACDRLFEMEPENTGNYTIMANLYTQAGRWEEAEMVRNKMKRIGLKKIPGTSWIETEK 613



 Score =  127 bits (319), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 108/426 (25%), Positives = 191/426 (44%), Gaps = 47/426 (11%)

Query: 39  LLKDFCHSRL--HVQQIQAQLILHNLQSNPTIAHHFITVCQSHXXXXXXXXXXXXXVPRP 96
           L++ F   RL  HV Q+ A++++ +++ +  +A   I+                    R 
Sbjct: 28  LIQHFTRHRLPLHVLQLHARIVVFSIKPDNFLASKLISFYTRQDRFRQALHVFDEITVR- 86

Query: 97  HVFIFNSLIRAFSHSHHHHNSLTP-LSIFAH--MHRNTILPNHYTFPFLFKSLSAPCHF- 152
           + F +N+L+ A++    + ++ +  LS         +   P+  +   + K+LS    F 
Sbjct: 87  NAFSYNALLIAYTSREMYFDAFSLFLSWIGSSCYSSDAARPDSISISCVLKALSGCDDFW 146

Query: 153 --AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMI 210
             + A+ VH  V++ G   D++V N ++  Y     + S  R++FDEM+ RDVVSW  MI
Sbjct: 147 LGSLARQVHGFVIRGGFDSDVFVGNGMITYYTKCDNIES-ARKVFDEMSERDVVSWNSMI 205

Query: 211 MGFRNAGKFDDALLAFEQM-QYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGW 269
            G+  +G F+D    ++ M   +   PN VT+++   AC  S  +  G  +H  +  N  
Sbjct: 206 SGYSQSGSFEDCKKMYKAMLACSDFKPNGVTVISVFQACGQSSDLIFGLEVHKKMIENHI 265

Query: 270 ELDVVLGTALIDMYAKCGR-------------------------------VEEGVRVFSS 298
           ++D+ L  A+I  YAKCG                                V+E + +FS 
Sbjct: 266 QMDLSLCNAVIGFYAKCGSLDYARALFDEMSEKDSVTYGAIISGYMAHGLVKEAMALFSE 325

Query: 299 VKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMG 358
           ++   + TWNA+I GL      EE I  F  M + G R + VTL ++L +  +S  +  G
Sbjct: 326 MESIGLSTWNAMISGLMQNNHHEEVINSFREMIRCGSRPNTVTLSSLLPSLTYSSNLKGG 385

Query: 359 RQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVM-RCMPFDPTKAMWGSLLVS 417
           ++I  F +  + G   N+     ++D  A+ G L  A  V   C   D +   W +++ +
Sbjct: 386 KEIHAFAI--RNGADNNIYVTTSIIDNYAKLGFLLGAQRVFDNCK--DRSLIAWTAIITA 441

Query: 418 SKSQGD 423
               GD
Sbjct: 442 YAVHGD 447


>AT1G74600.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr1:28025153-28027840 REVERSE LENGTH=895
          Length = 895

 Score =  219 bits (559), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 120/390 (30%), Positives = 207/390 (53%), Gaps = 5/390 (1%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P      + S+I  F+   +   ++    +F+ M  +   P+  T   +    S+    
Sbjct: 511 IPFKDNACWASMISGFNEYGYLREAI---GLFSEMLDDGTSPDESTLAAVLTVCSSHPSL 567

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMG 212
            + + +H + L+ G    + + ++L+ +Y+    L  L RQ++D +   D VS + +I G
Sbjct: 568 PRGKEIHGYTLRAGIDKGMDLGSALVNMYSKCGSL-KLARQVYDRLPELDPVSCSSLISG 626

Query: 213 FRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELD 272
           +   G   D  L F  M  +G   +   + + L A A S    +GA +H +I + G   +
Sbjct: 627 YSQHGLIQDGFLLFRDMVMSGFTMDSFAISSILKAAALSDESSLGAQVHAYITKIGLCTE 686

Query: 273 VVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQ 332
             +G++L+ MY+K G +++  + FS +   ++  W A+I   A      EA++++N M++
Sbjct: 687 PSVGSSLLTMYSKFGSIDDCCKAFSQINGPDLIAWTALIASYAQHGKANEALQVYNLMKE 746

Query: 333 DGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSL 392
            G + D+VT + VLSAC+H GLV+        +V+  YG  P  +HY CMVD L RSG L
Sbjct: 747 KGFKPDKVTFVGVLSACSHGGLVEESYFHLNSMVK-DYGIEPENRHYVCMVDALGRSGRL 805

Query: 393 REAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLY 452
           REA   +  M   P   +WG+LL + K  G++E  +  A+K +ELEP+++  Y+ LSN+ 
Sbjct: 806 REAESFINNMHIKPDALVWGTLLAACKIHGEVELGKVAAKKAIELEPSDAGAYISLSNIL 865

Query: 453 AEMGRWDDVEKVRGMMKDRQLTKDLGCSSV 482
           AE+G WD+VE+ R +MK   + K+ G SSV
Sbjct: 866 AEVGEWDEVEETRKLMKGTGVQKEPGWSSV 895



 Score =  133 bits (334), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 174/322 (54%), Gaps = 16/322 (4%)

Query: 97  HVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQ 156
           +V+ +N++I   + +  + N      +F  M      P+ YT+  +  + ++       +
Sbjct: 215 NVYCWNTII---AGALRNQNYGAVFDLFHEMCVGFQKPDSYTYSSVLAACASLEKLRFGK 271

Query: 157 SVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNA 216
            V A V+K G   D++V  +++ +YA    + +   ++F  + +  VVSWTVM+ G+  +
Sbjct: 272 VVQARVIKCGA-EDVFVCTAIVDLYAKCGHM-AEAMEVFSRIPNPSVVSWTVMLSGYTKS 329

Query: 217 GKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLG 276
                AL  F++M+++GV  N  T+ + ++AC     V   + +H ++ ++G+ LD  + 
Sbjct: 330 NDAFSALEIFKEMRHSGVEINNCTVTSVISACGRPSMVCEASQVHAWVFKSGFYLDSSVA 389

Query: 277 TALIDMYAKCGRVEEGVRVFS---SVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQD 333
            ALI MY+K G ++   +VF     ++ +N+   N +I   + +K   +AIRLF RM Q+
Sbjct: 390 AALISMYSKSGDIDLSEQVFEDLDDIQRQNIV--NVMITSFSQSKKPGKAIRLFTRMLQE 447

Query: 334 GVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLR 393
           G+R DE ++ ++LS  +    +++G+Q+ G+ +  K G + ++   + +  L ++ GSL 
Sbjct: 448 GLRTDEFSVCSLLSVLD---CLNLGKQVHGYTL--KSGLVLDLTVGSSLFTLYSKCGSLE 502

Query: 394 EAFEVMRCMPFDPTKAMWGSLL 415
           E++++ + +PF    A W S++
Sbjct: 503 ESYKLFQGIPFK-DNACWASMI 523



 Score =  108 bits (269), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/398 (23%), Positives = 169/398 (42%), Gaps = 43/398 (10%)

Query: 100 IFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVH 159
           I N +I +FS S     ++    +F  M +  +  + ++   L   L         + VH
Sbjct: 420 IVNVMITSFSQSKKPGKAIR---LFTRMLQEGLRTDEFSVCSLLSVLDC---LNLGKQVH 473

Query: 160 AHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKF 219
            + LK G + D+ V +SL  +Y+    L     +LF  +  +D   W  MI GF   G  
Sbjct: 474 GYTLKSGLVLDLTVGSSLFTLYSKCGSL-EESYKLFQGIPFKDNACWASMISGFNEYGYL 532

Query: 220 DDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTAL 279
            +A+  F +M   G +P+  T+   L  C+   ++  G  IH +  R G +  + LG+AL
Sbjct: 533 REAIGLFSEMLDDGTSPDESTLAAVLTVCSSHPSLPRGKEIHGYTLRAGIDKGMDLGSAL 592

Query: 280 IDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADE 339
           ++MY+KCG ++   +V+  + E +  + +++I G +     ++   LF  M   G   D 
Sbjct: 593 VNMYSKCGSLKLARQVYDRLPELDPVSCSSLISGYSQHGLIQDGFLLFRDMVMSGFTMDS 652

Query: 340 VTLLAVLSACNHSGLVDMGRQIFGFLVE-----------------GKYGFI--------- 373
             + ++L A   S    +G Q+  ++ +                  K+G I         
Sbjct: 653 FAISSILKAAALSDESSLGAQVHAYITKIGLCTEPSVGSSLLTMYSKFGSIDDCCKAFSQ 712

Query: 374 ---PNVKHYACMVDLLARSGSLREAFEVMRCMP---FDPTKAMWGSLLVSSKSQGDLEFS 427
              P++  +  ++   A+ G   EA +V   M    F P K  +  +L +    G +E S
Sbjct: 713 INGPDLIAWTALIASYAQHGKANEALQVYNLMKEKGFKPDKVTFVGVLSACSHGGLVEES 772

Query: 428 EFVARKLVE---LEPANSAYYVHLSNLYAEMGRWDDVE 462
            F    +V+   +EP N  +YV + +     GR  + E
Sbjct: 773 YFHLNSMVKDYGIEPENR-HYVCMVDALGRSGRLREAE 809



 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 144/294 (48%), Gaps = 14/294 (4%)

Query: 140 PFLF---KSLSAPCHFAQAQSVHAHVLKLGHL-HDIYVHNSLLGVYAASPRLFSLCRQLF 195
           PF F   +S S  C+    + + AH+L+   L  D+++  SLL  Y+ S  +    + LF
Sbjct: 49  PFRFFNDQSNSRLCNLRTTKILQAHLLRRYLLPFDVFLTKSLLSWYSNSGSMADAAK-LF 107

Query: 196 DEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVE 255
           D +   DVVS  +MI G++    F+++L  F +M + G   N ++  + ++AC+   A  
Sbjct: 108 DTIPQPDVVSCNIMISGYKQHRLFEESLRFFSKMHFLGFEANEISYGSVISACSALQAPL 167

Query: 256 MGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLA 315
               +     + G+    V+ +ALID+++K  R E+  +VF      NV+ WN +I G  
Sbjct: 168 FSELVCCHTIKMGYFFYEVVESALIDVFSKNLRFEDAYKVFRDSLSANVYCWNTIIAGAL 227

Query: 316 LAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPN 375
             ++      LF+ M     + D  T  +VL+AC       + +  FG +V+ +      
Sbjct: 228 RNQNYGAVFDLFHEMCVGFQKPDSYTYSSVLAAC-----ASLEKLRFGKVVQARVIKCGA 282

Query: 376 VKHYAC--MVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFS 427
              + C  +VDL A+ G + EA EV   +P +P+   W ++++S  ++ +  FS
Sbjct: 283 EDVFVCTAIVDLYAKCGHMAEAMEVFSRIP-NPSVVSW-TVMLSGYTKSNDAFS 334


>AT1G28690.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:10080042-10081604 REVERSE
           LENGTH=520
          Length = 520

 Score =  219 bits (559), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 126/356 (35%), Positives = 190/356 (53%), Gaps = 35/356 (9%)

Query: 158 VHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAG 217
           VHA ++K     D  +  +L+  Y  S +L S  R +F+ M   +VV  T MI G+ N G
Sbjct: 162 VHARIIKCDVELDDVLITALVDTYVKSGKLES-ARTVFETMKDENVVCCTSMISGYMNQG 220

Query: 218 KFDDALLAFE--------------------------------QMQYAGVAPNRVTMVNAL 245
             +DA   F                                  MQ AG  PN  T  + +
Sbjct: 221 FVEDAEEIFNTTKVKDIVVYNAMVEGFSRSGETAKRSVDMYISMQRAGFHPNISTFASVI 280

Query: 246 AACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVF 305
            AC+   + E+G  +H  I ++G    + +G++L+DMYAKCG + +  RVF  ++EKNVF
Sbjct: 281 GACSVLTSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGINDARRVFDQMQEKNVF 340

Query: 306 TWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFL 365
           +W ++I G     + EEA+ LF RM++  +  + VT L  LSAC+HSGLVD G +IF  +
Sbjct: 341 SWTSMIDGYGKNGNPEEALELFTRMKEFRIEPNYVTFLGALSACSHSGLVDKGYEIFESM 400

Query: 366 VEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLE 425
            +  Y   P ++HYAC+VDL+ R+G L +AFE  R MP  P   +W +LL S    G++E
Sbjct: 401 -QRDYSMKPKMEHYACIVDLMGRAGDLNKAFEFARAMPERPDSDIWAALLSSCNLHGNVE 459

Query: 426 FSEFVARKLVELEP-ANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCS 480
            +   A +L +L        Y+ LSN+YA   +WD+V K+R +MK R+++K +G S
Sbjct: 460 LASIAASELFKLNADKRPGAYLALSNVYASNDKWDNVSKIREVMKRRRISKTIGRS 515



 Score = 92.0 bits (227), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 93/384 (24%), Positives = 170/384 (44%), Gaps = 54/384 (14%)

Query: 97  HVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQ 156
            +F F S+      S+H+  S  PL      + +++ P  Y    L + +++P   A  +
Sbjct: 2   RIFRFTSISPRILPSNHY--STFPL----KQNVSSLSPAKYIAGALQEHINSPAPKA-GK 54

Query: 157 SVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNA 216
            +HA ++K G   D+ +   LL ++     L S  RQ+FDE+    + ++  MI G+   
Sbjct: 55  KIHADIIKTGFQPDLNISIKLLILHLKCGCL-SYARQVFDELPKPTLSAYNYMISGYLKH 113

Query: 217 GKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAV-----EMGAWIHDFIRRNGWEL 271
           G   + LL  ++M Y+G   +  T+   L A    G+       +   +H  I +   EL
Sbjct: 114 GLVKELLLLVQRMSYSGEKADGYTLSMVLKASNSRGSTMILPRSLCRLVHARIIKCDVEL 173

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNV--------------------------- 304
           D VL TAL+D Y K G++E    VF ++K++NV                           
Sbjct: 174 DDVLITALVDTYVKSGKLESARTVFETMKDENVVCCTSMISGYMNQGFVEDAEEIFNTTK 233

Query: 305 ----FTWNAVIKGLALAKSGEEAIR---LFNRMEQDGVRADEVTLLAVLSACNHSGLVDM 357
                 +NA+++G   ++SGE A R   ++  M++ G   +  T  +V+ AC+     ++
Sbjct: 234 VKDIVVYNAMVEG--FSRSGETAKRSVDMYISMQRAGFHPNISTFASVIGACSVLTSHEV 291

Query: 358 GRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVS 417
           G+Q+   ++  K G   ++K  + ++D+ A+ G + +A  V   M  +     W S++  
Sbjct: 292 GQQVHAQIM--KSGVYTHIKMGSSLLDMYAKCGGINDARRVFDQMQ-EKNVFSWTSMIDG 348

Query: 418 SKSQGDLE--FSEFVARKLVELEP 439
               G+ E     F   K   +EP
Sbjct: 349 YGKNGNPEEALELFTRMKEFRIEP 372



 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 91/170 (53%), Gaps = 3/170 (1%)

Query: 98  VFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQS 157
           + ++N+++  FS S     +   + ++  M R    PN  TF  +  + S        Q 
Sbjct: 237 IVVYNAMVEGFSRSGE--TAKRSVDMYISMQRAGFHPNISTFASVIGACSVLTSHEVGQQ 294

Query: 158 VHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAG 217
           VHA ++K G    I + +SLL +YA    + +  R++FD+M  ++V SWT MI G+   G
Sbjct: 295 VHAQIMKSGVYTHIKMGSSLLDMYAKCGGI-NDARRVFDQMQEKNVFSWTSMIDGYGKNG 353

Query: 218 KFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRN 267
             ++AL  F +M+   + PN VT + AL+AC+ SG V+ G  I + ++R+
Sbjct: 354 NPEEALELFTRMKEFRIEPNYVTFLGALSACSHSGLVDKGYEIFESMQRD 403


>AT3G02010.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:337965-340442 FORWARD
           LENGTH=825
          Length = 825

 Score =  219 bits (558), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 136/456 (29%), Positives = 222/456 (48%), Gaps = 11/456 (2%)

Query: 35  RAVTLLKDFCHSRLHVQQIQAQLILHNLQSNPTIAHHFITVCQSHXXXXXXXXXXXXXVP 94
           +AV  L DF       QQ+ A  +      + ++ +  +     H             +P
Sbjct: 258 KAVVGLHDFALG----QQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDE-MP 312

Query: 95  RPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQ 154
                 +N +I ++S +  +  SL     F  M        ++ F  +    +       
Sbjct: 313 ELDFVSYNVVISSYSQADQYEASL---HFFREMQCMGFDRRNFPFATMLSIAANLSSLQM 369

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFR 214
            + +H   L       ++V NSL+ +YA    +F     +F  +  R  VSWT +I G+ 
Sbjct: 370 GRQLHCQALLATADSILHVGNSLVDMYAKC-EMFEEAELIFKSLPQRTTVSWTALISGYV 428

Query: 215 NAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVV 274
             G     L  F +M+ + +  ++ T    L A A   ++ +G  +H FI R+G   +V 
Sbjct: 429 QKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVF 488

Query: 275 LGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDG 334
            G+ L+DMYAKCG +++ V+VF  + ++N  +WNA+I   A    GE AI  F +M + G
Sbjct: 489 SGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESG 548

Query: 335 VRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLRE 394
           ++ D V++L VL+AC+H G V+ G + F  +    YG  P  KHYACM+DLL R+G   E
Sbjct: 549 LQPDSVSILGVLTACSHCGFVEQGTEYFQAM-SPIYGITPKKKHYACMLDLLGRNGRFAE 607

Query: 395 AFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEP-ANSAYYVHLSNLYA 453
           A ++M  MPF+P + MW S+L + +   +   +E  A KL  +E   ++A YV +SN+YA
Sbjct: 608 AEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYA 667

Query: 454 EMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
             G W+ V  V+  M++R + K    S VEV  + H
Sbjct: 668 AAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIH 703



 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 168/349 (48%), Gaps = 9/349 (2%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P      FN+LI  +     +  S+    +F  M ++   P+ +TF  + K++     F
Sbjct: 210 IPEKDSVTFNTLITGYEKDGLYTESI---HLFLKMRQSGHQPSDFTFSGVLKAVVGLHDF 266

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMG 212
           A  Q +HA  +  G   D  V N +L  Y+   R+    R LFDEM   D VS+ V+I  
Sbjct: 267 ALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLE-TRMLFDEMPELDFVSYNVVISS 325

Query: 213 FRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELD 272
           +  A +++ +L  F +MQ  G           L+  A+  +++MG  +H        +  
Sbjct: 326 YSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSI 385

Query: 273 VVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQ 332
           + +G +L+DMYAKC   EE   +F S+ ++   +W A+I G          ++LF +M  
Sbjct: 386 LHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRG 445

Query: 333 DGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSL 392
             +RAD+ T   VL A      + +G+Q+  F++  + G + NV   + +VD+ A+ GS+
Sbjct: 446 SNLRADQSTFATVLKASASFASLLLGKQLHAFII--RSGNLENVFSGSGLVDMYAKCGSI 503

Query: 393 REAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVE--LEP 439
           ++A +V   MP D     W +L+ +    GD E +     K++E  L+P
Sbjct: 504 KDAVQVFEEMP-DRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQP 551



 Score = 92.4 bits (228), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 143/334 (42%), Gaps = 11/334 (3%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNT--ILPNHYTFPFLFKSLSAPC 150
           +P   V  +  L+  ++ + H   +     +F  M R++   LP+H TF  L    +   
Sbjct: 105 MPDRTVVTWTILMGWYARNSHFDEAF---KLFRQMCRSSSCTLPDHVTFTTLLPGCNDAV 161

Query: 151 HFAQAQSVHAHVLKLGHLHDIY--VHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTV 208
                  VHA  +KLG   + +  V N LL  Y    RL   C  LF+E+  +D V++  
Sbjct: 162 PQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLAC-VLFEEIPEKDSVTFNT 220

Query: 209 MIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNG 268
           +I G+   G + +++  F +M+ +G  P+  T    L A        +G  +H      G
Sbjct: 221 LITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTG 280

Query: 269 WELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFN 328
           +  D  +G  ++D Y+K  RV E   +F  + E +  ++N VI   + A   E ++  F 
Sbjct: 281 FSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFR 340

Query: 329 RMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLAR 388
            M+  G          +LS   +   + MGRQ+    +      I +V +   +VD+ A+
Sbjct: 341 EMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGN--SLVDMYAK 398

Query: 389 SGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQG 422
                EA  + + +P   T   W +L+     +G
Sbjct: 399 CEMFEEAELIFKSLP-QRTTVSWTALISGYVQKG 431



 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 108/241 (44%), Gaps = 12/241 (4%)

Query: 189 SLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQM--QYAGVAPNRVTMVNALA 246
           S  R LFD M  R VV+WT+++  +     FD+A   F QM    +   P+ VT    L 
Sbjct: 96  SSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLP 155

Query: 247 ACADSGAVEMGAWIHDFIRRNGWELD--VVLGTALIDMYAKCGRVEEGVRVFSSVKEKNV 304
            C D+        +H F  + G++ +  + +   L+  Y +  R++    +F  + EK+ 
Sbjct: 156 GCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDS 215

Query: 305 FTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVD--MGRQIF 362
            T+N +I G        E+I LF +M Q G +  + T   VL A    GL D  +G+Q+ 
Sbjct: 216 VTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAV--VGLHDFALGQQLH 273

Query: 363 GFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQG 422
              V    GF  +      ++D  ++   + E   +   MP      +  ++++SS SQ 
Sbjct: 274 ALSV--TTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMP--ELDFVSYNVVISSYSQA 329

Query: 423 D 423
           D
Sbjct: 330 D 330


>AT2G34400.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr2:14516226-14518186 FORWARD
           LENGTH=621
          Length = 621

 Score =  219 bits (557), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 131/391 (33%), Positives = 211/391 (53%), Gaps = 19/391 (4%)

Query: 101 FNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVH- 159
           +NS+I  +S + +  +++    +F  M      P+  T   L   L A  H    ++   
Sbjct: 201 WNSMISGYSEAGYAKDAM---DLFRKMEEEGFEPDERT---LVSMLGACSHLGDLRTGRL 254

Query: 160 ----AHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRN 215
               A   K+G     ++ + L+ +Y     L S  R++F++M  +D V+WT MI  +  
Sbjct: 255 LEEMAITKKIGL--STFLGSKLISMYGKCGDLDS-ARRVFNQMIKKDRVAWTAMITVYSQ 311

Query: 216 AGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVL 275
            GK  +A   F +M+  GV+P+  T+   L+AC   GA+E+G  I         + ++ +
Sbjct: 312 NGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYV 371

Query: 276 GTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGV 335
            T L+DMY KCGRVEE +RVF ++  KN  TWNA+I   A     +EA+ LF+RM    V
Sbjct: 372 ATGLVDMYGKCGRVEEALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDRM---SV 428

Query: 336 RADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREA 395
              ++T + VLSAC H+GLV  G + F   +   +G +P ++HY  ++DLL+R+G L EA
Sbjct: 429 PPSDITFIGVLSACVHAGLVHQGCRYF-HEMSSMFGLVPKIEHYTNIIDLLSRAGMLDEA 487

Query: 396 FEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPA-NSAYYVHLSNLYAE 454
           +E M   P  P + M  ++L +   + D+   E   R L+E++ A N+  YV  SN+ A+
Sbjct: 488 WEFMERFPGKPDEIMLAAILGACHKRKDVAIREKAMRMLMEMKEAKNAGNYVISSNVLAD 547

Query: 455 MGRWDDVEKVRGMMKDRQLTKDLGCSSVEVE 485
           M  WD+  K+R +M+DR + K  GCS +E+E
Sbjct: 548 MKMWDESAKMRALMRDRGVVKTPGCSWIEIE 578



 Score =  190 bits (482), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 115/389 (29%), Positives = 194/389 (49%), Gaps = 11/389 (2%)

Query: 34  DRAVTLLKDFCHSRLHVQQIQAQLILHNLQSNPTIAHHFITVCQSHXXXXXXXXXXXXXV 93
           +R    L   C S   ++QIQAQ++LH+++       +F+                    
Sbjct: 37  ERDFLFLLKKCISVNQLRQIQAQMLLHSVEKP-----NFLIPKAVELGDFNYSSFLFSVT 91

Query: 94  PRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFA 153
             P+ + FN +IR  +++ + H +   LS++  M  + + P+ +T+ F+F + +      
Sbjct: 92  EEPNHYSFNYMIRGLTNTWNDHEA--ALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIG 149

Query: 154 QAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGF 213
             +SVH+ + K+G   D+++++SL+ +YA   ++    R+LFDE+T RD VSW  MI G+
Sbjct: 150 VGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQV-GYARKLFDEITERDTVSWNSMISGY 208

Query: 214 RNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDV 273
             AG   DA+  F +M+  G  P+  T+V+ L AC+  G +  G  + +        L  
Sbjct: 209 SEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLST 268

Query: 274 VLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQD 333
            LG+ LI MY KCG ++   RVF+ + +K+   W A+I   +      EA +LF  ME+ 
Sbjct: 269 FLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKT 328

Query: 334 GVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLR 393
           GV  D  TL  VLSAC   G +++G+QI     E       N+     +VD+  + G + 
Sbjct: 329 GVSPDAGTLSTVLSACGSVGALELGKQIETHASE--LSLQHNIYVATGLVDMYGKCGRVE 386

Query: 394 EAFEVMRCMPFDPTKAMWGSLLVSSKSQG 422
           EA  V   MP    +A W +++ +   QG
Sbjct: 387 EALRVFEAMPV-KNEATWNAMITAYAHQG 414


>AT2G21090.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr2:9045695-9047488 REVERSE
           LENGTH=597
          Length = 597

 Score =  219 bits (557), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 127/427 (29%), Positives = 224/427 (52%), Gaps = 37/427 (8%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P   V  +N+++  ++   + H +L     +    R+ I  N ++F  L  +       
Sbjct: 139 MPERDVVSWNTMVIGYAQDGNLHEALW---FYKEFRRSGIKFNEFSFAGLLTACVKSRQL 195

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDV--------- 203
              +  H  VL  G L ++ +  S++  YA   ++ S  ++ FDEMT +D+         
Sbjct: 196 QLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMES-AKRCFDEMTVKDIHIWTTLISG 254

Query: 204 ----------------------VSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTM 241
                                 VSWT +I G+   G  + AL  F +M   GV P + T 
Sbjct: 255 YAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTF 314

Query: 242 VNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKE 301
            + L A A   ++  G  IH ++ R     + ++ ++LIDMY+K G +E   RVF    +
Sbjct: 315 SSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERVFRICDD 374

Query: 302 K-NVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQ 360
           K +   WN +I  LA    G +A+R+ + M +  V+ +  TL+ +L+AC+HSGLV+ G +
Sbjct: 375 KHDCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTTLVVILNACSHSGLVEEGLR 434

Query: 361 IFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKS 420
            F  +   ++G +P+ +HYAC++DLL R+G  +E    +  MPF+P K +W ++L   + 
Sbjct: 435 WFESMTV-QHGIVPDQEHYACLIDLLGRAGCFKELMRKIEEMPFEPDKHIWNAILGVCRI 493

Query: 421 QGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCS 480
            G+ E  +  A +L++L+P +SA Y+ LS++YA+ G+W+ VEK+RG+MK R++ K+   S
Sbjct: 494 HGNEELGKKAADELIKLDPESSAPYILLSSIYADHGKWELVEKLRGVMKKRRVNKEKAVS 553

Query: 481 SVEVEEQ 487
            +E+E++
Sbjct: 554 WIEIEKK 560



 Score =  119 bits (298), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 145/335 (43%), Gaps = 47/335 (14%)

Query: 121 LSIFAHMHRNTILPNHYTFPFLF--KSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLL 178
           L I      NT+L NH    ++   K + A   F Q            HL ++Y  N+++
Sbjct: 72  LKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQM-----------HLRNLYSWNNMV 120

Query: 179 GVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNR 238
             Y  S  L    R +FD M  RDVVSW  M++G+   G   +AL  +++ + +G+  N 
Sbjct: 121 SGYVKSGMLVR-ARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNE 179

Query: 239 VTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVR---- 294
            +    L AC  S  +++    H  +   G+  +VVL  ++ID YAKCG++E   R    
Sbjct: 180 FSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDE 239

Query: 295 ---------------------------VFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLF 327
                                      +F  + EKN  +W A+I G     SG  A+ LF
Sbjct: 240 MTVKDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLF 299

Query: 328 NRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLA 387
            +M   GV+ ++ T  + L A      +  G++I G+++  +    PN    + ++D+ +
Sbjct: 300 RKMIALGVKPEQFTFSSCLCASASIASLRHGKEIHGYMI--RTNVRPNAIVISSLIDMYS 357

Query: 388 RSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQG 422
           +SGSL  +  V R          W +++ +    G
Sbjct: 358 KSGSLEASERVFRICDDKHDCVFWNTMISALAQHG 392



 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 117/276 (42%), Gaps = 46/276 (16%)

Query: 217 GKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL-DVVL 275
            +   A+   E +   G+      + + L  C D+ +++ G WIH  ++  G++  + +L
Sbjct: 25  AELSQAVSRLESLTQQGIRLPFDLLASLLQQCGDTKSLKQGKWIHRHLKITGFKRPNTLL 84

Query: 276 GTALIDMYAKCGR--------------------------VEEG--VR---VFSSVKEKNV 304
              LI MY KCG+                          V+ G  VR   VF S+ E++V
Sbjct: 85  SNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARVVFDSMPERDV 144

Query: 305 FTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGF 364
            +WN ++ G A   +  EA+  +    + G++ +E +   +L+AC  S  + + RQ  G 
Sbjct: 145 VSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVKSRQLQLNRQAHGQ 204

Query: 365 LVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKA----MWGSLLVSSKS 420
           ++    GF+ NV     ++D  A+ G +  A    RC  FD        +W +L+     
Sbjct: 205 VLVA--GFLSNVVLSCSIIDAYAKCGQMESA---KRC--FDEMTVKDIHIWTTLISGYAK 257

Query: 421 QGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMG 456
            GD+E +E   +   E+   N   +  L   Y   G
Sbjct: 258 LGDMEAAE---KLFCEMPEKNPVSWTALIAGYVRQG 290


>AT1G10330.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:3388747-3390150 FORWARD
           LENGTH=467
          Length = 467

 Score =  218 bits (556), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 147/477 (30%), Positives = 233/477 (48%), Gaps = 66/477 (13%)

Query: 34  DRAVTLLKDFCHSRLHVQQIQAQLILHNLQSNPTIAHHFITVCQSHXXXXXXXXXXXXXV 93
           + A+ LL+ F +S   ++QI   L    L SN  +A  + T C                 
Sbjct: 14  EDALHLLQRFLYSSNQIKQIHTVL----LTSNALVASRWKTKC----------------- 52

Query: 94  PRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFA 153
                 ++N+LIR++  +  +    T L++F HM  + + PN+ TFP L K+  +    +
Sbjct: 53  ------VYNTLIRSYLTTGEYK---TSLALFTHMLASHVQPNNLTFPSLIKAACSSFSVS 103

Query: 154 QAQSVHAHVLKLGHLHDIYVHNSLLGVYA------ASPRLFS--------LCRQLFD--- 196
              ++H   LK G L D +V  S +  Y       +S ++F          C  L D   
Sbjct: 104 YGVALHGQALKRGFLWDPFVQTSFVRFYGEVGDLESSRKMFDDILNPCVVACNSLLDACG 163

Query: 197 -------------EMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQM---QYAGVAPNRVT 240
                         M   DVVSWT +I GF   G    AL+ F +M   + A + PN  T
Sbjct: 164 RNGEMDYAFEYFQRMPVTDVVSWTTVINGFSKKGLHAKALMVFGEMIQNERAVITPNEAT 223

Query: 241 MVNALAACA--DSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSS 298
            V+ L++CA  D G + +G  IH ++      L   LGTAL+DMY K G +E  + +F  
Sbjct: 224 FVSVLSSCANFDQGGIRLGKQIHGYVMSKEIILTTTLGTALLDMYGKAGDLEMALTIFDQ 283

Query: 299 VKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMG 358
           +++K V  WNA+I  LA     ++A+ +F  M+   V  + +TLLA+L+AC  S LVD+G
Sbjct: 284 IRDKKVCAWNAIISALASNGRPKQALEMFEMMKSSYVHPNGITLLAILTACARSKLVDLG 343

Query: 359 RQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSS 418
            Q+F  +   +Y  IP  +HY C+VDL+ R+G L +A   ++ +PF+P  ++ G+LL + 
Sbjct: 344 IQLFSSICS-EYKIIPTSEHYGCVVDLIGRAGLLVDAANFIQSLPFEPDASVLGALLGAC 402

Query: 419 KSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTK 475
           K   + E    V ++L+ L+P +   YV LS   A    W + EK+R  M +  + K
Sbjct: 403 KIHENTELGNTVGKQLIGLQPQHCGQYVALSTFNALDSNWSEAEKMRKAMIEAGIRK 459


>AT1G06140.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:1864796-1866472 FORWARD
           LENGTH=558
          Length = 558

 Score =  218 bits (555), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 114/313 (36%), Positives = 180/313 (57%), Gaps = 2/313 (0%)

Query: 172 YVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQY 231
           Y+  S++ +Y    RL    R+LF+    R+VV WT +I GF    +  +A   F QM  
Sbjct: 247 YLQASIIDMYVKC-RLLDNARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLR 305

Query: 232 AGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEE 291
             + PN+ T+   L +C+  G++  G  +H ++ RNG E+D V  T+ IDMYA+CG ++ 
Sbjct: 306 ESILPNQCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDMYARCGNIQM 365

Query: 292 GVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNH 351
              VF  + E+NV +W+++I    +    EEA+  F++M+   V  + VT +++LSAC+H
Sbjct: 366 ARTVFDMMPERNVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSACSH 425

Query: 352 SGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMW 411
           SG V  G + F  +    YG +P  +HYACMVDLL R+G + EA   +  MP  P  + W
Sbjct: 426 SGNVKEGWKQFESMTR-DYGVVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMASAW 484

Query: 412 GSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDR 471
           G+LL + +   +++ +  +A KL+ +EP  S+ YV LSN+YA+ G W+ V  VR  M  +
Sbjct: 485 GALLSACRIHKEVDLAGEIAEKLLSMEPEKSSVYVLLSNIYADAGMWEMVNCVRRKMGIK 544

Query: 472 QLTKDLGCSSVEV 484
              K +G S+ EV
Sbjct: 545 GYRKHVGQSATEV 557



 Score =  122 bits (306), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 180/386 (46%), Gaps = 9/386 (2%)

Query: 34  DRAVTLLKDFCHSRL--HVQQIQAQLILHNLQSNPTIAHHFITV-CQSHXXXXXXXXXXX 90
           +RA  LL     ++   H QQ+ A++I+H  +    +         QS+           
Sbjct: 5   NRARALLTILSQAKTLNHTQQVHAKVIIHGFEDEVVLGSSLTNAYIQSNRLDFATSSFNR 64

Query: 91  XXVPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPC 150
               + +   +N+++  +S S     S   L ++  M R+    + +   F  K+     
Sbjct: 65  IPCWKRNRHSWNTILSGYSKSKTCCYS-DVLLLYNRMRRHCDGVDSFNLVFAIKACVGLG 123

Query: 151 HFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMI 210
                  +H   +K G   D YV  SL+ +YA    + S  +++FDE+  R+ V W V++
Sbjct: 124 LLENGILIHGLAMKNGLDKDDYVAPSLVEMYAQLGTMES-AQKVFDEIPVRNSVLWGVLM 182

Query: 211 MGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDF-IRRNGW 269
            G+    K  +    F  M+  G+A + +T++  + AC +  A ++G  +H   IRR+  
Sbjct: 183 KGYLKYSKDPEVFRLFCLMRDTGLALDALTLICLVKACGNVFAGKVGKCVHGVSIRRSFI 242

Query: 270 ELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNR 329
           +    L  ++IDMY KC  ++   ++F +  ++NV  W  +I G A  +   EA  LF +
Sbjct: 243 DQSDYLQASIIDMYVKCRLLDNARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQ 302

Query: 330 MEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARS 389
           M ++ +  ++ TL A+L +C+  G +  G+ + G+++  + G   +  ++   +D+ AR 
Sbjct: 303 MLRESILPNQCTLAAILVSCSSLGSLRHGKSVHGYMI--RNGIEMDAVNFTSFIDMYARC 360

Query: 390 GSLREAFEVMRCMPFDPTKAMWGSLL 415
           G+++ A  V   MP +     W S++
Sbjct: 361 GNIQMARTVFDMMP-ERNVISWSSMI 385


>AT4G13650.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:7939611-7942898 REVERSE
           LENGTH=1064
          Length = 1064

 Score =  218 bits (554), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 131/440 (29%), Positives = 217/440 (49%), Gaps = 6/440 (1%)

Query: 51  QQIQAQLILHNLQSNPTIAHHFITVCQSHXXXXXXXXXXXXXVPRPHVFIFNSLIRAFSH 110
           +QI +Q+I  N Q N  +    I +  +                   V  + ++I  ++ 
Sbjct: 510 EQIHSQIIKTNFQLNAYVCSVLIDM-YAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQ 568

Query: 111 SHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHD 170
            +    +LT    F  M    I  +         + +      + Q +HA     G   D
Sbjct: 569 YNFDDKALTT---FRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSD 625

Query: 171 IYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQ 230
           +   N+L+ +Y+   ++       F++    D ++W  ++ GF+ +G  ++AL  F +M 
Sbjct: 626 LPFQNALVTLYSRCGKI-EESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMN 684

Query: 231 YAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVE 290
             G+  N  T  +A+ A +++  ++ G  +H  I + G++ +  +  ALI MYAKCG + 
Sbjct: 685 REGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSIS 744

Query: 291 EGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACN 350
           +  + F  V  KN  +WNA+I   +    G EA+  F++M    VR + VTL+ VLSAC+
Sbjct: 745 DAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACS 804

Query: 351 HSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAM 410
           H GLVD G   F  +   +YG  P  +HY C+VD+L R+G L  A E ++ MP  P   +
Sbjct: 805 HIGLVDKGIAYFESM-NSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALV 863

Query: 411 WGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKD 470
           W +LL +     ++E  EF A  L+ELEP +SA YV LSNLYA   +WD  +  R  MK+
Sbjct: 864 WRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKE 923

Query: 471 RQLTKDLGCSSVEVEEQGHT 490
           + + K+ G S +EV+   H+
Sbjct: 924 KGVKKEPGQSWIEVKNSIHS 943



 Score =  142 bits (359), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 148/299 (49%), Gaps = 6/299 (2%)

Query: 97  HVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQ 156
           +V ++N ++ A+       NS     IF  M    I+PN YT+P + K+          +
Sbjct: 454 NVVLWNVMLVAYGLLDDLRNSF---RIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGE 510

Query: 157 SVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNA 216
            +H+ ++K     + YV + L+ +YA   +L      +      +DVVSWT MI G+   
Sbjct: 511 QIHSQIIKTNFQLNAYVCSVLIDMYAKLGKL-DTAWDILIRFAGKDVVSWTTMIAGYTQY 569

Query: 217 GKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLG 276
              D AL  F QM   G+  + V + NA++ACA   A++ G  IH     +G+  D+   
Sbjct: 570 NFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQ 629

Query: 277 TALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVR 336
            AL+ +Y++CG++EE    F   +  +   WNA++ G   + + EEA+R+F RM ++G+ 
Sbjct: 630 NALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGID 689

Query: 337 ADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREA 395
            +  T  + + A + +  +  G+Q+   +   K G+    +    ++ + A+ GS+ +A
Sbjct: 690 NNNFTFGSAVKAASETANMKQGKQVHAVIT--KTGYDSETEVCNALISMYAKCGSISDA 746



 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/404 (24%), Positives = 180/404 (44%), Gaps = 44/404 (10%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPL-SIFAHMHRNTILPNHYTFPFLFKSL-SAPC 150
           +P   +F +N +I+  +      N +  +  +F  M    + PN  TF  + ++      
Sbjct: 146 MPERTIFTWNKMIKELAS----RNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSV 201

Query: 151 HFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMI 210
            F   + +HA +L  G      V N L+ +Y+ +     L R++FD +  +D  SW  MI
Sbjct: 202 AFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNG-FVDLARRVFDGLRLKDHSSWVAMI 260

Query: 211 MGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWE 270
            G        +A+  F  M   G+ P      + L+AC    ++E+G  +H  + + G+ 
Sbjct: 261 SGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFS 320

Query: 271 LDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRM 330
            D  +  AL+ +Y   G +     +FS++ +++  T+N +I GL+    GE+A+ LF RM
Sbjct: 321 SDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRM 380

Query: 331 EQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSG 390
             DG+  D  TL +++ AC+  G +  G+Q+  +    K GF  N K    +++L A+  
Sbjct: 381 HLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTT--KLGFASNNKIEGALLNLYAKCA 438

Query: 391 -------------------------------SLREAFEVMRCMPFD---PTKAMWGSLLV 416
                                           LR +F + R M  +   P +  + S+L 
Sbjct: 439 DIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILK 498

Query: 417 SSKSQGDLEFSEFVARKLVELEPANSAYYVH-LSNLYAEMGRWD 459
           +    GDLE  E +  ++++     +AY    L ++YA++G+ D
Sbjct: 499 TCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLD 542



 Score =  129 bits (325), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 152/329 (46%), Gaps = 15/329 (4%)

Query: 101 FNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHA 160
           +N+LI   S   +   ++    +F  MH + + P+  T   L  + SA     + Q +HA
Sbjct: 357 YNTLINGLSQCGYGEKAM---ELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHA 413

Query: 161 HVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFD 220
           +  KLG   +  +  +LL +YA    +       F E    +VV W VM++ +       
Sbjct: 414 YTTKLGFASNNKIEGALLNLYAKCADI-ETALDYFLETEVENVVLWNVMLVAYGLLDDLR 472

Query: 221 DALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALI 280
           ++   F QMQ   + PN+ T  + L  C   G +E+G  IH  I +  ++L+  + + LI
Sbjct: 473 NSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLI 532

Query: 281 DMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEV 340
           DMYAK G+++    +      K+V +W  +I G       ++A+  F +M   G+R+DEV
Sbjct: 533 DMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEV 592

Query: 341 TLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMR 400
            L   +SAC     +  G+QI         GF  ++     +V L +R G + E++    
Sbjct: 593 GLTNAVSACAGLQALKEGQQIHAQACVS--GFSSDLPFQNALVTLYSRCGKIEESY---- 646

Query: 401 CMPFDPTKA----MWGSLLVSSKSQGDLE 425
            + F+ T+A     W +L+   +  G+ E
Sbjct: 647 -LAFEQTEAGDNIAWNALVSGFQQSGNNE 674



 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 160/350 (45%), Gaps = 7/350 (2%)

Query: 50  VQQIQAQLILHNLQSNPTIAHHFITVCQSHXXXXXXXXXXXXXVPRPHVFIFNSLIRAFS 109
           V+QI A+++   L+ +  + +  I +   +               + H    +S +   S
Sbjct: 206 VEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDH----SSWVAMIS 261

Query: 110 HSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLH 169
               +      + +F  M+   I+P  Y F  +  +          + +H  VLKLG   
Sbjct: 262 GLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSS 321

Query: 170 DIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQM 229
           D YV N+L+ +Y     L S    +F  M+ RD V++  +I G    G  + A+  F++M
Sbjct: 322 DTYVCNALVSLYFHLGNLIS-AEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRM 380

Query: 230 QYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRV 289
              G+ P+  T+ + + AC+  G +  G  +H +  + G+  +  +  AL+++YAKC  +
Sbjct: 381 HLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADI 440

Query: 290 EEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSAC 349
           E  +  F   + +NV  WN ++    L      + R+F +M+ + +  ++ T  ++L  C
Sbjct: 441 ETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTC 500

Query: 350 NHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVM 399
              G +++G QI   ++  K  F  N    + ++D+ A+ G L  A++++
Sbjct: 501 IRLGDLELGEQIHSQII--KTNFQLNAYVCSVLIDMYAKLGKLDTAWDIL 548



 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/273 (28%), Positives = 122/273 (44%), Gaps = 5/273 (1%)

Query: 132 ILPNHYTFPFLFKS-LSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSL 190
           I PNH T  +L +  L       + + +H+ +LKLG   +  +   L   Y     L+  
Sbjct: 80  IRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGA 139

Query: 191 CRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAAC-A 249
            + +FDEM  R + +W  MI    +     +    F +M    V PN  T    L AC  
Sbjct: 140 FK-VFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRG 198

Query: 250 DSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNA 309
            S A ++   IH  I   G     V+   LID+Y++ G V+   RVF  ++ K+  +W A
Sbjct: 199 GSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVA 258

Query: 310 VIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGK 369
           +I GL+  +   EAIRLF  M   G+        +VLSAC     +++G Q+ G ++  K
Sbjct: 259 MISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVL--K 316

Query: 370 YGFIPNVKHYACMVDLLARSGSLREAFEVMRCM 402
            GF  +      +V L    G+L  A  +   M
Sbjct: 317 LGFSSDTYVCNALVSLYFHLGNLISAEHIFSNM 349



 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 115/286 (40%), Gaps = 47/286 (16%)

Query: 227 EQMQYAGVAPNRVTMVNALAACADS-GAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAK 285
           + ++  G+ PN  T+   L  C  + G+++ G  +H  I + G + +  L   L D Y  
Sbjct: 73  DSVENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLF 132

Query: 286 CGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAV 345
            G +    +VF  + E+ +FTWN +IK LA      E   LF RM  + V  +E T   V
Sbjct: 133 KGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGV 192

Query: 346 LSAC------------------------------------NHSGLVDMGRQIFGFLVEGK 369
           L AC                                    + +G VD+ R++F  L    
Sbjct: 193 LEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLR--- 249

Query: 370 YGFIPNVKHYACMVDLLARSGSLREAFEV---MRCMPFDPTKAMWGSLLVSSKSQGDLEF 426
              + +   +  M+  L+++    EA  +   M  +   PT   + S+L + K    LE 
Sbjct: 250 ---LKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEI 306

Query: 427 SEFVARKLVELEPANSAYYVH-LSNLYAEMGRWDDVEKVRGMMKDR 471
            E +   +++L  ++  Y  + L +LY  +G     E +   M  R
Sbjct: 307 GEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQR 352


>AT2G04860.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:1706787-1708865 REVERSE
           LENGTH=692
          Length = 692

 Score =  217 bits (553), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 119/333 (35%), Positives = 182/333 (54%), Gaps = 3/333 (0%)

Query: 151 HFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMI 210
           H     S+H + +K G      V N L+ +Y+    + ++   LF+++    ++SW  +I
Sbjct: 362 HIDIGMSLHGYAIKSGLCTKTLVVNGLITMYSKFDDVETVLF-LFEQLQETPLISWNSVI 420

Query: 211 MGFRNAGKFDDALLAFEQMQY-AGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGW 269
            G   +G+   A   F QM    G+ P+ +T+ + LA C+    + +G  +H +  RN +
Sbjct: 421 SGCVQSGRASTAFEVFHQMMLTGGLLPDAITIASLLAGCSQLCCLNLGKELHGYTLRNNF 480

Query: 270 ELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNR 329
           E +  + TALIDMYAKCG   +   VF S+K     TWN++I G +L+     A+  +  
Sbjct: 481 ENENFVCTALIDMYAKCGNEVQAESVFKSIKAPCTATWNSMISGYSLSGLQHRALSCYLE 540

Query: 330 MEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARS 389
           M + G++ DE+T L VLSACNH G VD G+  F  +++ ++G  P ++HYA MV LL R+
Sbjct: 541 MREKGLKPDEITFLGVLSACNHGGFVDEGKICFRAMIK-EFGISPTLQHYALMVGLLGRA 599

Query: 390 GSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLS 449
               EA  ++  M   P  A+WG+LL +     +LE  E+VARK+  L+  N   YV +S
Sbjct: 600 CLFTEALYLIWKMDIKPDSAVWGALLSACIIHRELEVGEYVARKMFMLDYKNGGLYVLMS 659

Query: 450 NLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSV 482
           NLYA    WDDV +VR MMKD      LG S +
Sbjct: 660 NLYATEAMWDDVVRVRNMMKDNGYDGYLGVSQI 692



 Score =  133 bits (335), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/250 (32%), Positives = 126/250 (50%), Gaps = 6/250 (2%)

Query: 101 FNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF--AQAQSV 158
           F+SL+++  H      S +P++IF  + R+++ PNH+T     ++ +   +    Q + V
Sbjct: 16  FHSLLKSCIHGEI---SSSPITIFRDLLRSSLTPNHFTMSIFLQATTTSFNSFKLQVEQV 72

Query: 159 HAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGK 218
             H+ K G    +YV  SLL +Y     + S  + LFDEM  RD V W  +I G+   G 
Sbjct: 73  QTHLTKSGLDRFVYVKTSLLNLYLKKGCVTS-AQMLFDEMPERDTVVWNALICGYSRNGY 131

Query: 219 FDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTA 278
             DA   F  M   G +P+  T+VN L  C   G V  G  +H    ++G ELD  +  A
Sbjct: 132 ECDAWKLFIVMLQQGFSPSATTLVNLLPFCGQCGFVSQGRSVHGVAAKSGLELDSQVKNA 191

Query: 279 LIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRAD 338
           LI  Y+KC  +     +F  +K+K+  +WN +I   + +   EEAI +F  M +  V   
Sbjct: 192 LISFYSKCAELGSAEVLFREMKDKSTVSWNTMIGAYSQSGLQEEAITVFKNMFEKNVEIS 251

Query: 339 EVTLLAVLSA 348
            VT++ +LSA
Sbjct: 252 PVTIINLLSA 261



 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 154/318 (48%), Gaps = 18/318 (5%)

Query: 101 FNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHA 160
           +N++I A+S S     ++T   +F +M    +  +  T   L  +     H +  + +H 
Sbjct: 220 WNTMIGAYSQSGLQEEAIT---VFKNMFEKNVEISPVTIINLLSA-----HVSH-EPLHC 270

Query: 161 HVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFD 220
            V+K G ++DI V  SL+  Y+    L S   +L+       +V  T ++  +   G  D
Sbjct: 271 LVVKCGMVNDISVVTSLVCAYSRCGCLVS-AERLYASAKQDSIVGLTSIVSCYAEKGDMD 329

Query: 221 DALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALI 280
            A++ F + +   +  + V +V  L  C  S  +++G  +H +  ++G     ++   LI
Sbjct: 330 IAVVYFSKTRQLCMKIDAVALVGILHGCKKSSHIDIGMSLHGYAIKSGLCTKTLVVNGLI 389

Query: 281 DMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRME-QDGVRADE 339
            MY+K   VE  + +F  ++E  + +WN+VI G   +     A  +F++M    G+  D 
Sbjct: 390 TMYSKFDDVETVLFLFEQLQETPLISWNSVISGCVQSGRASTAFEVFHQMMLTGGLLPDA 449

Query: 340 VTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYAC--MVDLLARSGSLREAFE 397
           +T+ ++L+ C+    +++G+++ G+ +   +      +++ C  ++D+ A+ G+  +A  
Sbjct: 450 ITIASLLAGCSQLCCLNLGKELHGYTLRNNF----ENENFVCTALIDMYAKCGNEVQAES 505

Query: 398 VMRCMPFDPTKAMWGSLL 415
           V + +   P  A W S++
Sbjct: 506 VFKSIK-APCTATWNSMI 522



 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 110/256 (42%), Gaps = 16/256 (6%)

Query: 226 FEQMQYAGVAPNRVTMVNALAACADS-GAVEMGA-WIHDFIRRNGWELDVVLGTALIDMY 283
           F  +  + + PN  TM   L A   S  + ++    +   + ++G +  V + T+L+++Y
Sbjct: 36  FRDLLRSSLTPNHFTMSIFLQATTTSFNSFKLQVEQVQTHLTKSGLDRFVYVKTSLLNLY 95

Query: 284 AKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLL 343
            K G V     +F  + E++   WNA+I G +      +A +LF  M Q G      TL+
Sbjct: 96  LKKGCVTSAQMLFDEMPERDTVVWNALICGYSRNGYECDAWKLFIVMLQQGFSPSATTLV 155

Query: 344 AVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMP 403
            +L  C   G V  GR + G  V  K G   + +    ++   ++   L  A  + R M 
Sbjct: 156 NLLPFCGQCGFVSQGRSVHG--VAAKSGLELDSQVKNALISFYSKCAELGSAEVLFREMK 213

Query: 404 FDPTKAMWGSLLVSSKSQGDLEFSEFVARKL----VELEPAN-----SAYYVH--LSNLY 452
            D +   W +++ +    G  E +  V + +    VE+ P       SA+  H  L  L 
Sbjct: 214 -DKSTVSWNTMIGAYSQSGLQEEAITVFKNMFEKNVEISPVTIINLLSAHVSHEPLHCLV 272

Query: 453 AEMGRWDDVEKVRGMM 468
            + G  +D+  V  ++
Sbjct: 273 VKCGMVNDISVVTSLV 288


>AT4G31070.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:15118696-15120537 REVERSE
           LENGTH=613
          Length = 613

 Score =  217 bits (552), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 201/379 (53%), Gaps = 11/379 (2%)

Query: 114 HHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQS----VHAHVLKLGHLH 169
           + N    + +F  M R  + PN  T   L   L A        S    +H    + G   
Sbjct: 229 NQNYEMGVDLFRAMQRENLRPNRVT---LLSVLPACVELNYGSSLVKEIHGFSFRHGCHA 285

Query: 170 DIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQM 229
           D  +  + + +Y     + SL R LF+    RDVV W+ MI G+   G   + +    QM
Sbjct: 286 DERLTAAFMTMYCRCGNV-SLSRVLFETSKVRDVVMWSSMISGYAETGDCSEVMNLLNQM 344

Query: 230 QYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRV 289
           +  G+  N VT++  ++AC +S  +   + +H  I + G+   ++LG ALIDMYAKCG +
Sbjct: 345 RKEGIEANSVTLLAIVSACTNSTLLSFASTVHSQILKCGFMSHILLGNALIDMYAKCGSL 404

Query: 290 EEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSAC 349
                VF  + EK++ +W+++I    L   G EA+ +F  M + G   D++  LA+LSAC
Sbjct: 405 SAAREVFYELTEKDLVSWSSMINAYGLHGHGSEALEIFKGMIKGGHEVDDMAFLAILSAC 464

Query: 350 NHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKA 409
           NH+GLV+  + I  F   GKY     ++HYAC ++LL R G + +AFEV   MP  P+  
Sbjct: 465 NHAGLVEEAQTI--FTQAGKYHMPVTLEHYACYINLLGRFGKIDDAFEVTINMPMKPSAR 522

Query: 410 MWGSLLVSSKSQGDLEFS-EFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMM 468
           +W SLL + ++ G L+ + + +A +L++ EP N A YV LS ++ E G +   E+VR +M
Sbjct: 523 IWSSLLSACETHGRLDVAGKIIANELMKSEPDNPANYVLLSKIHTESGNYHAAEEVRRVM 582

Query: 469 KDRQLTKDLGCSSVEVEEQ 487
           + R+L K  G S +E E Q
Sbjct: 583 QRRKLNKCYGFSKIEPELQ 601



 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/299 (29%), Positives = 141/299 (47%), Gaps = 24/299 (8%)

Query: 139 FPFLFKSLSAPCHFAQ-----AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQ 193
           F  +  S+   C F Q        +H   LK G   D  V NSL+ +YA   R +++ R+
Sbjct: 45  FTAILPSVIKACAFQQEPFLLGAQLHCLCLKAGADCDTVVSNSLISMYAKFSRKYAV-RK 103

Query: 194 LFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGA 253
           +FDEM HRD VS+  +I      G   +A+   ++M + G  P    + + LA C   G+
Sbjct: 104 VFDEMLHRDTVSYCSIINSCCQDGLLYEAMKLIKEMYFYGFIPKSELVASLLALCTRMGS 163

Query: 254 V-EMGAWIHDFIRRNG-WELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVI 311
             ++    H  +  +   +  V+L TAL+DMY K         VF  ++ KN  +W A+I
Sbjct: 164 SSKVARMFHALVLVDERMQESVLLSTALVDMYLKFDDHAAAFHVFDQMEVKNEVSWTAMI 223

Query: 312 KGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSAC---NH-SGLVDMGRQIFGFLVE 367
            G    ++ E  + LF  M+++ +R + VTLL+VL AC   N+ S LV   ++I GF   
Sbjct: 224 SGCVANQNYEMGVDLFRAMQRENLRPNRVTLLSVLPACVELNYGSSLV---KEIHGF--S 278

Query: 368 GKYGFIPNVKHYACMVDLLARSGSL---REAFEVMRCMPFDPTKAMWGSLLVSSKSQGD 423
            ++G   + +  A  + +  R G++   R  FE  +         MW S++      GD
Sbjct: 279 FRHGCHADERLTAAFMTMYCRCGNVSLSRVLFETSKVRDV----VMWSSMISGYAETGD 333


>AT3G22150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:7813028-7815490 FORWARD
           LENGTH=820
          Length = 820

 Score =  217 bits (552), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 128/392 (32%), Positives = 216/392 (55%), Gaps = 11/392 (2%)

Query: 98  VFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQS 157
           V  +N++I AF  +      L    +   M +     ++ T   L  + S   +    + 
Sbjct: 384 VVSWNTMISAFVQNGLDDEGLM---LVYEMQKQGFKIDYITVTALLSAASNLRNKEIGKQ 440

Query: 158 VHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTH--RDVVSWTVMIMGFRN 215
            HA +++ G +    +++ L+ +Y+ S  L  + ++LF+   +  RD  +W  MI G+  
Sbjct: 441 THAFLIRQG-IQFEGMNSYLIDMYSKSG-LIRISQKLFEGSGYAERDQATWNSMISGYTQ 498

Query: 216 AGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVL 275
            G  +   L F +M    + PN VT+ + L AC+  G+V++G  +H F  R   + +V +
Sbjct: 499 NGHTEKTFLVFRKMLEQNIRPNAVTVASILPACSQIGSVDLGKQLHGFSIRQYLDQNVFV 558

Query: 276 GTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGV 335
            +AL+DMY+K G ++    +FS  KE+N  T+  +I G      GE AI LF  M++ G+
Sbjct: 559 ASALVDMYSKAGAIKYAEDMFSQTKERNSVTYTTMILGYGQHGMGERAISLFLSMQESGI 618

Query: 336 RADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREA 395
           + D +T +AVLSAC++SGL+D G +IF  + E  Y   P+ +HY C+ D+L R G + EA
Sbjct: 619 KPDAITFVAVLSACSYSGLIDEGLKIFEEMRE-VYNIQPSSEHYCCITDMLGRVGRVNEA 677

Query: 396 FEVMRCMPFDPTKA-MWGSLLVSSKSQGDLEFSEFVARKLVELEPAN--SAYYVHLSNLY 452
           +E ++ +  +   A +WGSLL S K  G+LE +E V+ +L + +     S Y V LSN+Y
Sbjct: 678 YEFVKGLGEEGNIAELWGSLLGSCKLHGELELAETVSERLAKFDKGKNFSGYEVLLSNMY 737

Query: 453 AEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEV 484
           AE  +W  V+KVR  M+++ L K++G S +E+
Sbjct: 738 AEEQKWKSVDKVRRGMREKGLKKEVGRSGIEI 769



 Score =  125 bits (314), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 174/346 (50%), Gaps = 11/346 (3%)

Query: 95  RPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQ 154
           R +V  +N+LI  +  +  +  +     I   M R  + P+  +F  +F ++S      +
Sbjct: 176 RKNVVAWNTLISWYVKTGRNAEACRQFGI---MMRMEVKPSPVSFVNVFPAVSISRSIKK 232

Query: 155 AQSVHAHVLKLG--HLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMG 212
           A   +  +LKLG  ++ D++V +S + +YA    + S  R++FD    R++  W  MI  
Sbjct: 233 ANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDIES-SRRVFDSCVERNIEVWNTMIGV 291

Query: 213 F-RNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
           + +N    +   L  E +    +  + VT + A +A +    VE+G   H F+ +N  EL
Sbjct: 292 YVQNDCLVESIELFLEAIGSKEIVSDEVTYLLAASAVSALQQVELGRQFHGFVSKNFREL 351

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRME 331
            +V+  +L+ MY++CG V +   VF S++E++V +WN +I         +E + L   M+
Sbjct: 352 PIVIVNSLMVMYSRCGSVHKSFGVFLSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQ 411

Query: 332 QDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGS 391
           + G + D +T+ A+LSA ++    ++G+Q   FL+     F   +  Y  ++D+ ++SG 
Sbjct: 412 KQGFKIDYITVTALLSAASNLRNKEIGKQTHAFLIRQGIQF-EGMNSY--LIDMYSKSGL 468

Query: 392 LREAFEVMRCMPF-DPTKAMWGSLLVSSKSQGDLEFSEFVARKLVE 436
           +R + ++     + +  +A W S++      G  E +  V RK++E
Sbjct: 469 IRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEKTFLVFRKMLE 514



 Score =  119 bits (297), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 164/349 (46%), Gaps = 21/349 (6%)

Query: 66  PTIAHHFITVCQSHXXXXXXXXXXXXXVPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFA 125
           P+I      +CQ               +P+P   ++N++I  F  ++  H +L     ++
Sbjct: 40  PSIRSRLSKICQDGNPQLARQLFDA--IPKPTTVLWNTIIIGFICNNLPHEALL---FYS 94

Query: 126 HMHRNTILPN--HYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAA 183
            M +     N   YT+    K+ +   +    ++VH H+++        VHNSL+ +Y +
Sbjct: 95  RMKKTAPFTNCDAYTYSSTLKACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVS 154

Query: 184 ---SPRLFS--LCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNR 238
              +P  F   + R++FD M  ++VV+W  +I  +   G+  +A   F  M    V P+ 
Sbjct: 155 CLNAPDCFEYDVVRKVFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFGIMMRMEVKPSP 214

Query: 239 VTMVNALAACADSGAVEMGAWIHDFIRRNGWEL--DVVLGTALIDMYAKCGRVEEGVRVF 296
           V+ VN   A + S +++     +  + + G E   D+ + ++ I MYA+ G +E   RVF
Sbjct: 215 VSFVNVFPAVSISRSIKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDIESSRRVF 274

Query: 297 SSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVR---ADEVTLLAVLSACNHSG 353
            S  E+N+  WN +I          E+I LF  +E  G +   +DEVT L   SA +   
Sbjct: 275 DSCVERNIEVWNTMIGVYVQNDCLVESIELF--LEAIGSKEIVSDEVTYLLAASAVSALQ 332

Query: 354 LVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCM 402
            V++GRQ  GF V   +  +P V   + MV + +R GS+ ++F V   M
Sbjct: 333 QVELGRQFHGF-VSKNFRELPIVIVNSLMV-MYSRCGSVHKSFGVFLSM 379


>AT3G49170.1 | Symbols: EMB2261 | Tetratricopeptide repeat
           (TPR)-like superfamily protein | chr3:18226954-18229600
           REVERSE LENGTH=850
          Length = 850

 Score =  217 bits (552), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 118/370 (31%), Positives = 203/370 (54%), Gaps = 3/370 (0%)

Query: 121 LSIFAHM-HRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLG 179
           +++F+ M  +  + PNH+TF   FK+          + V     K G   +  V NS++ 
Sbjct: 357 INLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVIS 416

Query: 180 VYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRV 239
           ++  S R+    R  F+ ++ +++VS+   + G      F+ A     ++    +  +  
Sbjct: 417 MFVKSDRMEDAQRA-FESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAF 475

Query: 240 TMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSV 299
           T  + L+  A+ G++  G  IH  + + G   +  +  ALI MY+KCG ++   RVF+ +
Sbjct: 476 TFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFM 535

Query: 300 KEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGR 359
           + +NV +W ++I G A        +  FN+M ++GV+ +EVT +A+LSAC+H GLV  G 
Sbjct: 536 ENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGW 595

Query: 360 QIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSK 419
           + F  + E  +   P ++HYACMVDLL R+G L +AFE +  MPF     +W + L + +
Sbjct: 596 RHFNSMYE-DHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACR 654

Query: 420 SQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGC 479
              + E  +  ARK++EL+P   A Y+ LSN+YA  G+W++  ++R  MK+R L K+ GC
Sbjct: 655 VHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGC 714

Query: 480 SSVEVEEQGH 489
           S +EV ++ H
Sbjct: 715 SWIEVGDKIH 724



 Score =  112 bits (281), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 154/325 (47%), Gaps = 21/325 (6%)

Query: 127 MHRNTILP-NHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASP 185
           M R+ I P +  TF  L KS      F   + VHA +++     D  ++NSL+ +Y+ S 
Sbjct: 52  MARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSG 111

Query: 186 RLFSLCRQLFDEMTH---RDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMV 242
              +    +F+ M     RDVVSW+ M+  + N G+  DA+  F +    G+ PN     
Sbjct: 112 DS-AKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYT 170

Query: 243 NALAACADSGAVEMGAWIHDFIRRNG-WELDVVLGTALIDMYAKC-GRVEEGVRVFSSVK 300
             + AC++S  V +G     F+ + G +E DV +G +LIDM+ K     E   +VF  + 
Sbjct: 171 AVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMS 230

Query: 301 EKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQ 360
           E NV TW  +I          EAIR F  M   G  +D+ TL +V SAC     + +G+Q
Sbjct: 231 ELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQ 290

Query: 361 IFGFLVEGKYGFIPNVKHYACMVDLLAR---SGSLREAFEVMRCMPFDPTKAMWGSLLVS 417
           +  + +  + G + +V+    +VD+ A+    GS+ +  +V   M  D +   W +L+  
Sbjct: 291 LHSWAI--RSGLVDDVE--CSLVDMYAKCSADGSVDDCRKVFDRME-DHSVMSWTALITG 345

Query: 418 SKSQGDLE------FSEFVARKLVE 436
                +L       FSE + +  VE
Sbjct: 346 YMKNCNLATEAINLFSEMITQGHVE 370



 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 134/284 (47%), Gaps = 10/284 (3%)

Query: 118 LTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLH-DIYVHNS 176
           L  + +F       ++PN Y +  + ++ S        +     ++K GH   D+ V  S
Sbjct: 148 LDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCS 207

Query: 177 LLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAP 236
           L+ ++      F    ++FD+M+  +VV+WT+MI      G   +A+  F  M  +G   
Sbjct: 208 LIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFES 267

Query: 237 NRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKC---GRVEEGV 293
           ++ T+ +  +ACA+   + +G  +H +  R+G   DV    +L+DMYAKC   G V++  
Sbjct: 268 DKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDV--ECSLVDMYAKCSADGSVDDCR 325

Query: 294 RVFSSVKEKNVFTWNAVIKG-LALAKSGEEAIRLFNRMEQDG-VRADEVTLLAVLSACNH 351
           +VF  +++ +V +W A+I G +       EAI LF+ M   G V  +  T  +   AC +
Sbjct: 326 KVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGN 385

Query: 352 SGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREA 395
                +G+Q+ G     K G   N      ++ +  +S  + +A
Sbjct: 386 LSDPRVGKQVLGQAF--KRGLASNSSVANSVISMFVKSDRMEDA 427


>AT1G15510.1 | Symbols: ATECB2, ECB2, VAC1 | Tetratricopeptide
           repeat (TPR)-like superfamily protein |
           chr1:5329111-5331711 FORWARD LENGTH=866
          Length = 866

 Score =  216 bits (551), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 132/381 (34%), Positives = 212/381 (55%), Gaps = 7/381 (1%)

Query: 111 SHHHHNSLTPLSI--FAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHL 168
           S + +N L   +I  +  M ++++ P+  T   +  + +          +H   +K   +
Sbjct: 371 SGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLI 430

Query: 169 HDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQ 228
             + V N+L+ +Y+   +       +F  +  ++V+SWT +I G R   +  +AL+   Q
Sbjct: 431 SYVIVANNLINMYSKC-KCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFLRQ 489

Query: 229 MQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGR 288
           M+   + PN +T+  ALAACA  GA+  G  IH  + R G  LD  L  AL+DMY +CGR
Sbjct: 490 MKMT-LQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGR 548

Query: 289 VEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSA 348
           +      F+S K K+V +WN ++ G +    G   + LF+RM +  VR DE+T +++L  
Sbjct: 549 MNTAWSQFNSQK-KDVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCG 607

Query: 349 CNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTK 408
           C+ S +V  G   F  + +  YG  PN+KHYAC+VDLL R+G L+EA + ++ MP  P  
Sbjct: 608 CSKSQMVRQGLMYFSKMED--YGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDP 665

Query: 409 AMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMM 468
           A+WG+LL + +    ++  E  A+ + EL+  +  YY+ L NLYA+ G+W +V KVR MM
Sbjct: 666 AVWGALLNACRIHHKIDLGELSAQHIFELDKKSVGYYILLCNLYADCGKWREVAKVRRMM 725

Query: 469 KDRQLTKDLGCSSVEVEEQGH 489
           K+  LT D GCS VEV+ + H
Sbjct: 726 KENGLTVDAGCSWVEVKGKVH 746



 Score =  141 bits (355), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 143/272 (52%), Gaps = 3/272 (1%)

Query: 132 ILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLC 191
           + P+ YTFP + ++       A+ + VH HV++ G+  DI V N+L+ +Y     + S  
Sbjct: 192 VKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKS-A 250

Query: 192 RQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADS 251
           R LFD M  RD++SW  MI G+   G   + L  F  M+   V P+ +T+ + ++AC   
Sbjct: 251 RLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELL 310

Query: 252 GAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVI 311
           G   +G  IH ++   G+ +D+ +  +L  MY   G   E  ++FS ++ K++ +W  +I
Sbjct: 311 GDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMI 370

Query: 312 KGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYG 371
            G       ++AI  +  M+QD V+ DE+T+ AVLSAC   G +D G ++    ++ +  
Sbjct: 371 SGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKAR-- 428

Query: 372 FIPNVKHYACMVDLLARSGSLREAFEVMRCMP 403
            I  V     ++++ ++   + +A ++   +P
Sbjct: 429 LISYVIVANNLINMYSKCKCIDKALDIFHNIP 460



 Score =  109 bits (273), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 126/259 (48%), Gaps = 8/259 (3%)

Query: 142 LFKSLSAPCHFAQAQSVHAHV--LKLGHLHDIYVH--NSLLGVYAASPRLFSLCRQLFDE 197
           +F +L   C + +AQ   + V  + L  +  + V   N+ L ++     L      +F +
Sbjct: 96  VFVALVRLCEWKRAQEEGSKVYSIALSSMSSLGVELGNAFLAMFVRFGNLVD-AWYVFGK 154

Query: 198 MTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQY-AGVAPNRVTMVNALAACADSGAVEM 256
           M+ R++ SW V++ G+   G FD+A+  + +M +  GV P+  T    L  C     +  
Sbjct: 155 MSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLAR 214

Query: 257 GAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLAL 316
           G  +H  + R G+ELD+ +  ALI MY KCG V+    +F  +  +++ +WNA+I G   
Sbjct: 215 GKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFE 274

Query: 317 AKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNV 376
                E + LF  M    V  D +TL +V+SAC   G   +GR I  +++    GF  ++
Sbjct: 275 NGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVI--TTGFAVDI 332

Query: 377 KHYACMVDLLARSGSLREA 395
                +  +   +GS REA
Sbjct: 333 SVCNSLTQMYLNAGSWREA 351



 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 92/190 (48%), Gaps = 7/190 (3%)

Query: 217 GKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLG 276
           GK ++A+     MQ   VA +    V  +  C    A E G+ ++     +   L V LG
Sbjct: 73  GKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMSSLGVELG 132

Query: 277 TALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQ-DGV 335
            A + M+ + G + +   VF  + E+N+F+WN ++ G A     +EA+ L++RM    GV
Sbjct: 133 NAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGV 192

Query: 336 RADEVTLLAVLSACNHSGLVDM--GRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLR 393
           + D  T   VL  C   G+ D+  G+++   +V  +YG+  ++     ++ +  + G ++
Sbjct: 193 KPDVYTFPCVLRTC--GGIPDLARGKEVHVHVV--RYGYELDIDVVNALITMYVKCGDVK 248

Query: 394 EAFEVMRCMP 403
            A  +   MP
Sbjct: 249 SARLLFDRMP 258


>AT3G63370.1 | Symbols: OTP86 | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:23402080-23405180 FORWARD
           LENGTH=884
          Length = 884

 Score =  216 bits (551), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 120/336 (35%), Positives = 195/336 (58%), Gaps = 7/336 (2%)

Query: 156 QSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRN 215
           + +H H+L+ G L D  + N L+ VY    R      ++F+ +  +DVVSWT MI     
Sbjct: 507 KEIHCHILRKGLL-DTVIQNELVDVYGKC-RNMGYATRVFESIKGKDVVSWTSMISSSAL 564

Query: 216 AGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVL 275
            G   +A+  F +M   G++ + V ++  L+A A   A+  G  IH ++ R G+ L+  +
Sbjct: 565 NGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSI 624

Query: 276 GTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGV 335
             A++DMYA CG ++    VF  ++ K +  + ++I    +   G+ A+ LF++M  + V
Sbjct: 625 AVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENV 684

Query: 336 RADEVTLLAVLSACNHSGLVDMGRQIFGFL--VEGKYGFIPNVKHYACMVDLLARSGSLR 393
             D ++ LA+L AC+H+GL+D GR   GFL  +E +Y   P  +HY C+VD+L R+  + 
Sbjct: 685 SPDHISFLALLYACSHAGLLDEGR---GFLKIMEHEYELEPWPEHYVCLVDMLGRANCVV 741

Query: 394 EAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYA 453
           EAFE ++ M  +PT  +W +LL + +S  + E  E  A++L+ELEP N    V +SN++A
Sbjct: 742 EAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFA 801

Query: 454 EMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
           E GRW+DVEKVR  MK   + K  GCS +E++ + H
Sbjct: 802 EQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVH 837



 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 154/298 (51%), Gaps = 8/298 (2%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P    F +N++I A+     +    + L+++ +M    +     +FP L K+ +     
Sbjct: 142 MPDRTAFAWNTMIGAYVS---NGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDI 198

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHR-DVVSWTVMIM 211
                +H+ ++KLG+    ++ N+L+ +YA +  L S  R+LFD    + D V W  ++ 
Sbjct: 199 RSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDL-SAARRLFDGFQEKGDAVLWNSILS 257

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIH-DFIRRNGWE 270
            +  +GK  + L  F +M   G APN  T+V+AL AC      ++G  IH   ++ +   
Sbjct: 258 SYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHS 317

Query: 271 LDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRM 330
            ++ +  ALI MY +CG++ +  R+   +   +V TWN++IKG       +EA+  F+ M
Sbjct: 318 SELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDM 377

Query: 331 EQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLAR 388
              G ++DEV++ ++++A      +  G ++  +++  K+G+  N++    ++D+ ++
Sbjct: 378 IAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVI--KHGWDSNLQVGNTLIDMYSK 433



 Score =  115 bits (288), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 163/338 (48%), Gaps = 9/338 (2%)

Query: 100 IFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVH 159
           ++NS++ ++S S     SL  L +F  MH     PN YT      +     +    + +H
Sbjct: 251 LWNSILSSYSTSG---KSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIH 307

Query: 160 AHVLKLG-HLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGK 218
           A VLK   H  ++YV N+L+ +Y    ++     ++  +M + DVV+W  +I G+     
Sbjct: 308 ASVLKSSTHSSELYVCNALIAMYTRCGKM-PQAERILRQMNNADVVTWNSLIKGYVQNLM 366

Query: 219 FDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTA 278
           + +AL  F  M  AG   + V+M + +AA      +  G  +H ++ ++GW+ ++ +G  
Sbjct: 367 YKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNT 426

Query: 279 LIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRAD 338
           LIDMY+KC       R F  + +K++ +W  VI G A      EA+ LF  + +  +  D
Sbjct: 427 LIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEID 486

Query: 339 EVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEV 398
           E+ L ++L A +    + + ++I   ++  + G +  V     +VD+  +  ++  A  V
Sbjct: 487 EMILGSILRASSVLKSMLIVKEIHCHIL--RKGLLDTVIQNE-LVDVYGKCRNMGYATRV 543

Query: 399 MRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVE 436
              +      + W S++ SS   G+   +  + R++VE
Sbjct: 544 FESIKGKDVVS-WTSMISSSALNGNESEAVELFRRMVE 580



 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/328 (22%), Positives = 140/328 (42%), Gaps = 26/328 (7%)

Query: 93  VPRPHVFIFNS-LIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCH 151
           VP P +  F+  L  AF       N+ +P+  FA           Y      K  +    
Sbjct: 52  VPSPKLACFDGVLTEAFQRLDVSENN-SPVEAFA-----------YVLELCGKRRAV--- 96

Query: 152 FAQAQSVHAHVLKLGHLHDI-YVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMI 210
            +Q + +H+ + K     ++ ++   L+ +Y     L     ++FDEM  R   +W  MI
Sbjct: 97  -SQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDD-AEKVFDEMPDRTAFAWNTMI 154

Query: 211 MGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWE 270
             + + G+   AL  +  M+  GV     +    L ACA    +  G+ +H  + + G+ 
Sbjct: 155 GAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYH 214

Query: 271 LDVVLGTALIDMYAKCGRVEEGVRVFSSVKEK-NVFTWNAVIKGLALAKSGEEAIRLFNR 329
               +  AL+ MYAK   +    R+F   +EK +   WN+++   + +    E + LF  
Sbjct: 215 STGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFRE 274

Query: 330 MEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYAC--MVDLLA 387
           M   G   +  T+++ L+AC+      +G++I   +++       + + Y C  ++ +  
Sbjct: 275 MHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSS---THSSELYVCNALIAMYT 331

Query: 388 RSGSLREAFEVMRCMPFDPTKAMWGSLL 415
           R G + +A  ++R M  +     W SL+
Sbjct: 332 RCGKMPQAERILRQMN-NADVVTWNSLI 358


>AT3G15130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:5097153-5099222 REVERSE
           LENGTH=689
          Length = 689

 Score =  216 bits (550), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 119/393 (30%), Positives = 210/393 (53%), Gaps = 9/393 (2%)

Query: 101 FNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTI--LPNHYTFPFLFKSLSAPCHFAQAQSV 158
           +N++I  F H+ +   +L     F  M    I   P+ +T   L K+ S+       + +
Sbjct: 176 WNAMIAGFVHAGYGSKAL---DTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQI 232

Query: 159 HAHVLKLGH--LHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNA 216
           H  +++ G        +  SL+ +Y     LFS  R+ FD++  + ++SW+ +I+G+   
Sbjct: 233 HGFLVRSGFHCPSSATITGSLVDLYVKCGYLFS-ARKAFDQIKEKTMISWSSLILGYAQE 291

Query: 217 GKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLG 276
           G+F +A+  F+++Q      +   + + +   AD   +  G  +     +    L+  + 
Sbjct: 292 GEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVL 351

Query: 277 TALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVR 336
            +++DMY KCG V+E  + F+ ++ K+V +W  VI G      G++++R+F  M +  + 
Sbjct: 352 NSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIE 411

Query: 337 ADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAF 396
            DEV  LAVLSAC+HSG++  G ++F  L+E  +G  P V+HYAC+VDLL R+G L+EA 
Sbjct: 412 PDEVCYLAVLSACSHSGMIKEGEELFSKLLE-THGIKPRVEHYACVVDLLGRAGRLKEAK 470

Query: 397 EVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMG 456
            ++  MP  P   +W +LL   +  GD+E  + V + L+ ++  N A YV +SNLY + G
Sbjct: 471 HLIDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDAKNPANYVMMSNLYGQAG 530

Query: 457 RWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
            W++    R +   + L K+ G S VE+E + H
Sbjct: 531 YWNEQGNARELGNIKGLKKEAGMSWVEIEREVH 563



 Score =  159 bits (401), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 93/289 (32%), Positives = 155/289 (53%), Gaps = 10/289 (3%)

Query: 154 QAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGF 213
           Q   VH ++LK G   ++   N L+ +Y    R   +  ++FD M  R+VVSW+ ++ G 
Sbjct: 24  QGGQVHCYLLKSGSGLNLITSNYLIDMYCKC-REPLMAYKVFDSMPERNVVSWSALMSGH 82

Query: 214 RNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDV 273
              G    +L  F +M   G+ PN  T    L AC    A+E G  IH F  + G+E+ V
Sbjct: 83  VLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMV 142

Query: 274 VLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQD 333
            +G +L+DMY+KCGR+ E  +VF  + ++++ +WNA+I G   A  G +A+  F  M++ 
Sbjct: 143 EVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEA 202

Query: 334 GV--RADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSG- 390
            +  R DE TL ++L AC+ +G++  G+QI GFLV   +    +      +VDL  + G 
Sbjct: 203 NIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGY 262

Query: 391 --SLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVEL 437
             S R+AF+ ++    + T   W SL++    +G+   +  + ++L EL
Sbjct: 263 LFSARKAFDQIK----EKTMISWSSLILGYAQEGEFVEAMGLFKRLQEL 307



 Score =  131 bits (329), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 140/279 (50%), Gaps = 7/279 (2%)

Query: 121 LSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGV 180
           LS+F+ M R  I PN +TF    K+        +   +H   LK+G    + V NSL+ +
Sbjct: 92  LSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDM 151

Query: 181 YAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVA--PNR 238
           Y+   R+ +   ++F  +  R ++SW  MI GF +AG    AL  F  MQ A +   P+ 
Sbjct: 152 YSKCGRI-NEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDE 210

Query: 239 VTMVNALAACADSGAVEMGAWIHDFIRRNGWEL--DVVLGTALIDMYAKCGRVEEGVRVF 296
            T+ + L AC+ +G +  G  IH F+ R+G+       +  +L+D+Y KCG +    + F
Sbjct: 211 FTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAF 270

Query: 297 SSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVD 356
             +KEK + +W+++I G A      EA+ LF R+++   + D   L +++       L+ 
Sbjct: 271 DQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLR 330

Query: 357 MGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREA 395
            G+Q+    V+   G   +V +   +VD+  + G + EA
Sbjct: 331 QGKQMQALAVKLPSGLETSVLN--SVVDMYLKCGLVDEA 367



 Score = 89.4 bits (220), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 95/181 (52%), Gaps = 4/181 (2%)

Query: 236 PN-RVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVR 294
           PN R  +V+ L  C   G  + G  +H ++ ++G  L+++    LIDMY KC       +
Sbjct: 3   PNQRQNLVSILRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYK 62

Query: 295 VFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGL 354
           VF S+ E+NV +W+A++ G  L    + ++ LF+ M + G+  +E T    L AC     
Sbjct: 63  VFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNA 122

Query: 355 VDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSL 414
           ++ G QI GF +  K GF   V+    +VD+ ++ G + EA +V R +  D +   W ++
Sbjct: 123 LEKGLQIHGFCL--KIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRI-VDRSLISWNAM 179

Query: 415 L 415
           +
Sbjct: 180 I 180


>AT4G20770.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:11130762-11133086 REVERSE
           LENGTH=774
          Length = 774

 Score =  216 bits (549), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 206/388 (53%), Gaps = 7/388 (1%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P+P V  +N+++  +S+  H+  ++   S F  M    + P+  T   +  S +     
Sbjct: 376 IPQPSVSAWNAMLSGYSNYEHYEEAI---SNFRQMQFQNLKPDKTTLSVILSSCARLRFL 432

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDE-MTHRDVVSWTVMIM 211
              + +H  V++     + ++ + L+ VY+   ++  +   +FD+ +   D+  W  MI 
Sbjct: 433 EGGKQIHGVVIRTEISKNSHIVSGLIAVYSECEKM-EISECIFDDCINELDIACWNSMIS 491

Query: 212 GFRNAGKFDDALLAFEQM-QYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWE 270
           GFR+      AL+ F +M Q A + PN  +    L++C+   ++  G   H  + ++G+ 
Sbjct: 492 GFRHNMLDTKALILFRRMHQTAVLCPNETSFATVLSSCSRLCSLLHGRQFHGLVVKSGYV 551

Query: 271 LDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRM 330
            D  + TAL DMY KCG ++   + F +V  KN   WN +I G      G+EA+ L+ +M
Sbjct: 552 SDSFVETALTDMYCKCGEIDSARQFFDAVLRKNTVIWNEMIHGYGHNGRGDEAVGLYRKM 611

Query: 331 EQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSG 390
              G + D +T ++VL+AC+HSGLV+ G +I   + +  +G  P + HY C+VD L R+G
Sbjct: 612 ISSGEKPDGITFVSVLTACSHSGLVETGLEILSSM-QRIHGIEPELDHYICIVDCLGRAG 670

Query: 391 SLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSN 450
            L +A ++    P+  +  +W  LL S +  GD+  +  VA KL+ L+P +SA YV LSN
Sbjct: 671 RLEDAEKLAEATPYKSSSVLWEILLSSCRVHGDVSLARRVAEKLMRLDPQSSAAYVLLSN 730

Query: 451 LYAEMGRWDDVEKVRGMMKDRQLTKDLG 478
            Y+ + +WDD   ++G+M   ++ K  G
Sbjct: 731 TYSSLRQWDDSAALQGLMNKNRVHKTPG 758



 Score =  113 bits (282), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 149/345 (43%), Gaps = 18/345 (5%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P   V  +N++I           +L    ++  M  +  LP+ +T   +  + S     
Sbjct: 98  MPERDVVSWNNMISVLVRKGFEEKALV---VYKRMVCDGFLPSRFTLASVLSACSKVLDG 154

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMG 212
                 H   +K G   +I+V N+LL +YA    +     ++F+ ++  + VS+T +I G
Sbjct: 155 VFGMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFIVDYGVRVFESLSQPNEVSYTAVIGG 214

Query: 213 FRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAV---------EMGAWIHDF 263
                K  +A+  F  M   GV  + V + N L+  A              E+G  IH  
Sbjct: 215 LARENKVLEAVQMFRLMCEKGVQVDSVCLSNILSISAPREGCDSLSEIYGNELGKQIHCL 274

Query: 264 IRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEA 323
             R G+  D+ L  +L+++YAK   +     +F+ + E NV +WN +I G       +++
Sbjct: 275 ALRLGFGGDLHLNNSLLEIYAKNKDMNGAELIFAEMPEVNVVSWNIMIVGFGQEYRSDKS 334

Query: 324 IRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMV 383
           +    RM   G + +EVT ++VL AC  SG V+ GR+IF  + +      P+V  +  M+
Sbjct: 335 VEFLTRMRDSGFQPNEVTCISVLGACFRSGDVETGRRIFSSIPQ------PSVSAWNAML 388

Query: 384 DLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSE 428
              +      EA    R M F   K    +L V   S   L F E
Sbjct: 389 SGYSNYEHYEEAISNFRQMQFQNLKPDKTTLSVILSSCARLRFLE 433



 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/197 (34%), Positives = 102/197 (51%), Gaps = 2/197 (1%)

Query: 168 LHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFE 227
           + D+Y  N+ L        L   C ++FD M  RDVVSW  MI      G  + AL+ ++
Sbjct: 69  VRDVYSWNAFLTFRCKVGDLGEAC-EVFDGMPERDVVSWNNMISVLVRKGFEEKALVVYK 127

Query: 228 QMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCG 287
           +M   G  P+R T+ + L+AC+       G   H    + G + ++ +G AL+ MYAKCG
Sbjct: 128 RMVCDGFLPSRFTLASVLSACSKVLDGVFGMRCHGVAVKTGLDKNIFVGNALLSMYAKCG 187

Query: 288 -RVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVL 346
             V+ GVRVF S+ + N  ++ AVI GLA      EA+++F  M + GV+ D V L  +L
Sbjct: 188 FIVDYGVRVFESLSQPNEVSYTAVIGGLARENKVLEAVQMFRLMCEKGVQVDSVCLSNIL 247

Query: 347 SACNHSGLVDMGRQIFG 363
           S        D   +I+G
Sbjct: 248 SISAPREGCDSLSEIYG 264



 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 105/212 (49%), Gaps = 36/212 (16%)

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFR 214
            + +H   L+LG   D++++NSLL +YA +  + +    +F EM   +VVSW +MI+GF 
Sbjct: 268 GKQIHCLALRLGFGGDLHLNNSLLEIYAKNKDM-NGAELIFAEMPEVNVVSWNIMIVGFG 326

Query: 215 NAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVV 274
              + D ++    +M+ +G  PN VT ++ L AC  SG V                    
Sbjct: 327 QEYRSDKSVEFLTRMRDSGFQPNEVTCISVLGACFRSGDV-------------------- 366

Query: 275 LGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDG 334
                          E G R+FSS+ + +V  WNA++ G +  +  EEAI  F +M+   
Sbjct: 367 ---------------ETGRRIFSSIPQPSVSAWNAMLSGYSNYEHYEEAISNFRQMQFQN 411

Query: 335 VRADEVTLLAVLSACNHSGLVDMGRQIFGFLV 366
           ++ D+ TL  +LS+C     ++ G+QI G ++
Sbjct: 412 LKPDKTTLSVILSSCARLRFLEGGKQIHGVVI 443



 Score = 88.6 bits (218), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 103/206 (50%), Gaps = 4/206 (1%)

Query: 192 RQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADS 251
           R++F  +    V +W  M+ G+ N   +++A+  F QMQ+  + P++ T+   L++CA  
Sbjct: 370 RRIFSSIPQPSVSAWNAMLSGYSNYEHYEEAISNFRQMQFQNLKPDKTTLSVILSSCARL 429

Query: 252 GAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSS-VKEKNVFTWNAV 310
             +E G  IH  + R     +  + + LI +Y++C ++E    +F   + E ++  WN++
Sbjct: 430 RFLEGGKQIHGVVIRTEISKNSHIVSGLIAVYSECEKMEISECIFDDCINELDIACWNSM 489

Query: 311 IKGLALAKSGEEAIRLFNRMEQDGVRA-DEVTLLAVLSACNHSGLVDMGRQIFGFLVEGK 369
           I G        +A+ LF RM Q  V   +E +   VLS+C+    +  GRQ  G +V  K
Sbjct: 490 ISGFRHNMLDTKALILFRRMHQTAVLCPNETSFATVLSSCSRLCSLLHGRQFHGLVV--K 547

Query: 370 YGFIPNVKHYACMVDLLARSGSLREA 395
            G++ +      + D+  + G +  A
Sbjct: 548 SGYVSDSFVETALTDMYCKCGEIDSA 573



 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 84/209 (40%), Gaps = 65/209 (31%)

Query: 257 GAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNA------- 309
           G  IH FI R G + D  L   L+D+Y +CG  +   +VF  +  ++V++WNA       
Sbjct: 25  GKVIHGFIVRMGMKSDTYLCNRLLDLYIECGDGDYARKVFDEMSVRDVYSWNAFLTFRCK 84

Query: 310 ---------VIKGL-------------ALAKSG--EEAIRLFNRMEQDGVRADEVTLLAV 345
                    V  G+              L + G  E+A+ ++ RM  DG      TL +V
Sbjct: 85  VGDLGEACEVFDGMPERDVVSWNNMISVLVRKGFEEKALVVYKRMVCDGFLPSRFTLASV 144

Query: 346 LSACN-----------HSGLVDMG--RQIF------------GFLVEGKYGF-------I 373
           LSAC+           H   V  G  + IF            GF+V+  YG         
Sbjct: 145 LSACSKVLDGVFGMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFIVD--YGVRVFESLSQ 202

Query: 374 PNVKHYACMVDLLARSGSLREAFEVMRCM 402
           PN   Y  ++  LAR   + EA ++ R M
Sbjct: 203 PNEVSYTAVIGGLARENKVLEAVQMFRLM 231


>AT3G47840.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:17651912-17654032 FORWARD
           LENGTH=706
          Length = 706

 Score =  216 bits (549), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 117/389 (30%), Positives = 204/389 (52%), Gaps = 5/389 (1%)

Query: 98  VFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQS 157
           V  + SLI A+         +  +  F  M  + + PN  TF  +F + ++       + 
Sbjct: 275 VVSWTSLIVAYKRIGQE---VKAVETFIKMRNSQVPPNEQTFASMFSACASLSRLVWGEQ 331

Query: 158 VHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAG 217
           +H +VL LG    + V NS++ +Y+    L S    LF  M  RD++SW+ +I G+  AG
Sbjct: 332 LHCNVLSLGLNDSLSVSNSMMKMYSTCGNLVS-ASVLFQGMRCRDIISWSTIIGGYCQAG 390

Query: 218 KFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGT 277
             ++    F  M+ +G  P    + + L+   +   +E G  +H      G E +  + +
Sbjct: 391 FGEEGFKYFSWMRQSGTKPTDFALASLLSVSGNMAVIEGGRQVHALALCFGLEQNSTVRS 450

Query: 278 ALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRA 337
           +LI+MY+KCG ++E   +F      ++ +  A+I G A     +EAI LF +  + G R 
Sbjct: 451 SLINMYSKCGSIKEASMIFGETDRDDIVSLTAMINGYAEHGKSKEAIDLFEKSLKVGFRP 510

Query: 338 DEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFE 397
           D VT ++VL+AC HSG +D+G   F  + E  Y   P  +HY CMVDLL R+G L +A +
Sbjct: 511 DSVTFISVLTACTHSGQLDLGFHYFNMMQE-TYNMRPAKEHYGCMVDLLCRAGRLSDAEK 569

Query: 398 VMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGR 457
           ++  M +     +W +LL++ K++GD+E     A +++EL+P  +   V L+N+Y+  G 
Sbjct: 570 MINEMSWKKDDVVWTTLLIACKAKGDIERGRRAAERILELDPTCATALVTLANIYSSTGN 629

Query: 458 WDDVEKVRGMMKDRQLTKDLGCSSVEVEE 486
            ++   VR  MK + + K+ G SS+++++
Sbjct: 630 LEEAANVRKNMKAKGVIKEPGWSSIKIKD 658



 Score =  134 bits (338), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/422 (23%), Positives = 187/422 (44%), Gaps = 49/422 (11%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P  +   + ++I    H+  +   LT    F+ M R+  L + YTF    K+ +     
Sbjct: 169 MPFRNAVTWTAIITGLVHAGRYKEGLT---YFSEMSRSEELSDTYTFAIALKACAGLRQV 225

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLF-SLCRQLFDEMTHRDVVSWTVMIM 211
              +++H HV+  G +  + V NSL  +Y     +   LC  LF+ M+ RDVVSWT +I+
Sbjct: 226 KYGKAIHTHVIVRGFVTTLCVANSLATMYTECGEMQDGLC--LFENMSERDVVSWTSLIV 283

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
            ++  G+   A+  F +M+ + V PN  T  +  +ACA    +  G  +H  +   G   
Sbjct: 284 AYKRIGQEVKAVETFIKMRNSQVPPNEQTFASMFSACASLSRLVWGEQLHCNVLSLGLND 343

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRME 331
            + +  +++ MY+ CG +     +F  ++ +++ +W+ +I G   A  GEE  + F+ M 
Sbjct: 344 SLSVSNSMMKMYSTCGNLVSASVLFQGMRCRDIISWSTIIGGYCQAGFGEEGFKYFSWMR 403

Query: 332 QDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGS 391
           Q G +  +  L ++LS   +  +++ GRQ+    +   +G   N    + ++++ ++ GS
Sbjct: 404 QSGTKPTDFALASLLSVSGNMAVIEGGRQVHALAL--CFGLEQNSTVRSSLINMYSKCGS 461

Query: 392 LREA----------------------------------FEVMRCMPFDPTKAMWGSLLVS 417
           ++EA                                  FE    + F P    + S+L +
Sbjct: 462 IKEASMIFGETDRDDIVSLTAMINGYAEHGKSKEAIDLFEKSLKVGFRPDSVTFISVLTA 521

Query: 418 SKSQG--DLEFSEF-VARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLT 474
               G  DL F  F + ++   + PA   +Y  + +L    GR  D EK   M+ +    
Sbjct: 522 CTHSGQLDLGFHYFNMMQETYNMRPAKE-HYGCMVDLLCRAGRLSDAEK---MINEMSWK 577

Query: 475 KD 476
           KD
Sbjct: 578 KD 579



 Score =  120 bits (302), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 157/316 (49%), Gaps = 15/316 (4%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMH--RNTILPNHYTFPFLFKSLSAPC 150
           +P   +  + S+I+ +  ++   NS   L +F+ M    + + P+      + K+     
Sbjct: 66  MPHGDIVSWTSIIKRYVTAN---NSDEALILFSAMRVVDHAVSPDTSVLSVVLKACGQSS 122

Query: 151 HFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMI 210
           + A  +S+HA+ +K   L  +YV +SLL +Y    ++   CR +F EM  R+ V+WT +I
Sbjct: 123 NIAYGESLHAYAVKTSLLSSVYVGSSLLDMYKRVGKIDKSCR-VFSEMPFRNAVTWTAII 181

Query: 211 MGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWE 270
            G  +AG++ + L  F +M  +    +  T   AL ACA    V+ G  IH  +   G+ 
Sbjct: 182 TGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKACAGLRQVKYGKAIHTHVIVRGFV 241

Query: 271 LDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEE--AIRLFN 328
             + +  +L  MY +CG +++G+ +F ++ E++V +W ++I  +A  + G+E  A+  F 
Sbjct: 242 TTLCVANSLATMYTECGEMQDGLCLFENMSERDVVSWTSLI--VAYKRIGQEVKAVETFI 299

Query: 329 RMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLAR 388
           +M    V  +E T  ++ SAC     +  G Q+   ++    G   ++     M+ + + 
Sbjct: 300 KMRNSQVPPNEQTFASMFSACASLSRLVWGEQLHCNVLS--LGLNDSLSVSNSMMKMYST 357

Query: 389 SGSLREA---FEVMRC 401
            G+L  A   F+ MRC
Sbjct: 358 CGNLVSASVLFQGMRC 373



 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 112/233 (48%), Gaps = 5/233 (2%)

Query: 192 RQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYA--GVAPNRVTMVNALAACA 249
           RQ+FD+M H D+VSWT +I  +  A   D+AL+ F  M+     V+P+   +   L AC 
Sbjct: 60  RQVFDKMPHGDIVSWTSIIKRYVTANNSDEALILFSAMRVVDHAVSPDTSVLSVVLKACG 119

Query: 250 DSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNA 309
            S  +  G  +H +  +      V +G++L+DMY + G++++  RVFS +  +N  TW A
Sbjct: 120 QSSNIAYGESLHAYAVKTSLLSSVYVGSSLLDMYKRVGKIDKSCRVFSEMPFRNAVTWTA 179

Query: 310 VIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGK 369
           +I GL  A   +E +  F+ M +    +D  T    L AC     V  G+ I   ++   
Sbjct: 180 IITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKACAGLRQVKYGKAIHTHVI--V 237

Query: 370 YGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQG 422
            GF+  +     +  +    G +++   +   M  +     W SL+V+ K  G
Sbjct: 238 RGFVTTLCVANSLATMYTECGEMQDGLCLFENMS-ERDVVSWTSLIVAYKRIG 289


>AT4G32430.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:15652982-15655273 FORWARD
           LENGTH=763
          Length = 763

 Score =  215 bits (548), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 124/372 (33%), Positives = 205/372 (55%), Gaps = 7/372 (1%)

Query: 116 NSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHN 175
           N    +SIF +M  + + PN  TF  L  ++       +   +H   +K G + +  V N
Sbjct: 352 NKDDAVSIFLNMRFDGVYPNEVTFVGLINAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGN 411

Query: 176 SLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVA 235
           S + +YA    L    ++ F+++T R+++SW  MI GF   G   +AL  F     A   
Sbjct: 412 SFITLYAKFEALED-AKKAFEDITFREIISWNAMISGFAQNGFSHEALKMFLSAA-AETM 469

Query: 236 PNRVT---MVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEG 292
           PN  T   ++NA+A   D  +V+ G   H  + + G     V+ +AL+DMYAK G ++E 
Sbjct: 470 PNEYTFGSVLNAIAFAEDI-SVKQGQRCHAHLLKLGLNSCPVVSSALLDMYAKRGNIDES 528

Query: 293 VRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHS 352
            +VF+ + +KN F W ++I   +     E  + LF++M ++ V  D VT L+VL+ACN  
Sbjct: 529 EKVFNEMSQKNQFVWTSIISAYSSHGDFETVMNLFHKMIKENVAPDLVTFLSVLTACNRK 588

Query: 353 GLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWG 412
           G+VD G +IF  ++E  Y   P+ +HY+CMVD+L R+G L+EA E+M  +P  P ++M  
Sbjct: 589 GMVDKGYEIFNMMIE-VYNLEPSHEHYSCMVDMLGRAGRLKEAEELMSEVPGGPGESMLQ 647

Query: 413 SLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQ 472
           S+L S +  G+++    VA   +E++P  S  YV + N+YAE   WD   ++R  M+ + 
Sbjct: 648 SMLGSCRLHGNVKMGAKVAELAMEMKPELSGSYVQMYNIYAEKEEWDKAAEIRKAMRKKN 707

Query: 473 LTKDLGCSSVEV 484
           ++K+ G S ++V
Sbjct: 708 VSKEAGFSWIDV 719



 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/376 (24%), Positives = 174/376 (46%), Gaps = 15/376 (3%)

Query: 52  QIQAQLILHNLQSNPTIAHHFITVCQSHXXXXXXXXXXXXXVPRPHVFIFNSLIRAFSHS 111
           Q+Q+ ++   L+S+  + + FIT+  S              +    +  +NSL+   S  
Sbjct: 195 QLQSTVVKTGLESDLVVGNSFITM-YSRSGSFRGARRVFDEMSFKDMISWNSLLSGLSQE 253

Query: 112 HHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDI 171
                    + IF  M R  +  +H +F  +  +         A+ +H   +K G+   +
Sbjct: 254 GTF--GFEAVVIFRDMMREGVELDHVSFTSVITTCCHETDLKLARQIHGLCIKRGYESLL 311

Query: 172 YVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQY 231
            V N L+  Y+    L ++ + +F +M+ R+VVSWT MI     +   DDA+  F  M++
Sbjct: 312 EVGNILMSRYSKCGVLEAV-KSVFHQMSERNVVSWTTMI-----SSNKDDAVSIFLNMRF 365

Query: 232 AGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEE 291
            GV PN VT V  + A   +  ++ G  IH    + G+  +  +G + I +YAK   +E+
Sbjct: 366 DGVYPNEVTFVGLINAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGNSFITLYAKFEALED 425

Query: 292 GVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNH 351
             + F  +  + + +WNA+I G A      EA+++F     + +  +E T  +VL+A   
Sbjct: 426 AKKAFEDITFREIISWNAMISGFAQNGFSHEALKMFLSAAAETM-PNEYTFGSVLNAIAF 484

Query: 352 SG--LVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKA 409
           +    V  G++    L++      P V   + ++D+ A+ G++ E+ +V   M     + 
Sbjct: 485 AEDISVKQGQRCHAHLLKLGLNSCPVVS--SALLDMYAKRGNIDESEKVFNEMS-QKNQF 541

Query: 410 MWGSLLVSSKSQGDLE 425
           +W S++ +  S GD E
Sbjct: 542 VWTSIISAYSSHGDFE 557



 Score =  105 bits (262), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 112/218 (51%), Gaps = 13/218 (5%)

Query: 158 VHAHVLKLGHLHDIYVHNSLLGVYAASPRL-FSLCRQLFDEMTHRDVVSWTVMIMGFRNA 216
           +H      G    + V N+++G+Y  + R   +LC  +F+ +   DVVSW  ++ GF   
Sbjct: 98  IHGFSTTSGFTSFVCVSNAVMGMYRKAGRFDNALC--IFENLVDPDVVSWNTILSGF--- 152

Query: 217 GKFDDALLAFE---QMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDV 273
              DD  +A     +M+ AGV  +  T   AL+ C  S    +G  +   + + G E D+
Sbjct: 153 ---DDNQIALNFVVRMKSAGVVFDAFTYSTALSFCVGSEGFLLGLQLQSTVVKTGLESDL 209

Query: 274 VLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKS-GEEAIRLFNRMEQ 332
           V+G + I MY++ G      RVF  +  K++ +WN+++ GL+   + G EA+ +F  M +
Sbjct: 210 VVGNSFITMYSRSGSFRGARRVFDEMSFKDMISWNSLLSGLSQEGTFGFEAVVIFRDMMR 269

Query: 333 DGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKY 370
           +GV  D V+  +V++ C H   + + RQI G  ++  Y
Sbjct: 270 EGVELDHVSFTSVITTCCHETDLKLARQIHGLCIKRGY 307


>AT2G27610.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:11783927-11786533 REVERSE
           LENGTH=868
          Length = 868

 Score =  215 bits (548), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 115/395 (29%), Positives = 206/395 (52%), Gaps = 10/395 (2%)

Query: 97  HVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQ 156
           +V  + ++I  F  +     ++    +F+ M R  + PN +T+  +  +L          
Sbjct: 361 NVVSWTAMISGFLQNDGKEEAV---DLFSEMKRKGVRPNEFTYSVILTALPV----ISPS 413

Query: 157 SVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNA 216
            VHA V+K  +     V  +LL  Y    ++    + +F  +  +D+V+W+ M+ G+   
Sbjct: 414 EVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAK-VFSGIDDKDIVAWSAMLAGYAQT 472

Query: 217 GKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGA-VEMGAWIHDFIRRNGWELDVVL 275
           G+ + A+  F ++   G+ PN  T  + L  CA + A +  G   H F  ++  +  + +
Sbjct: 473 GETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCV 532

Query: 276 GTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGV 335
            +AL+ MYAK G +E    VF   +EK++ +WN++I G A      +A+ +F  M++  V
Sbjct: 533 SSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKV 592

Query: 336 RADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREA 395
           + D VT + V +AC H+GLV+ G + F  +V       P  +H +CMVDL +R+G L +A
Sbjct: 593 KMDGVTFIGVFAACTHAGLVEEGEKYFDIMVR-DCKIAPTKEHNSCMVDLYSRAGQLEKA 651

Query: 396 FEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEM 455
            +V+  MP      +W ++L + +     E     A K++ ++P +SA YV LSN+YAE 
Sbjct: 652 MKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAES 711

Query: 456 GRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGHT 490
           G W +  KVR +M +R + K+ G S +EV+ + ++
Sbjct: 712 GDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYS 746



 Score =  127 bits (318), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 123/251 (49%), Gaps = 3/251 (1%)

Query: 123 IFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYA 182
           +F ++HR  +  +   F  + K  +  C     + +H   +K G L D+ V  SL+  Y 
Sbjct: 80  LFLNIHRLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYM 139

Query: 183 ASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMV 242
                F   R++FDEM  R+VV+WT +I G+      D+ L  F +MQ  G  PN  T  
Sbjct: 140 KGSN-FKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFA 198

Query: 243 NALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEK 302
            AL   A+ G    G  +H  + +NG +  + +  +LI++Y KCG V +   +F   + K
Sbjct: 199 AALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVK 258

Query: 303 NVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIF 362
           +V TWN++I G A      EA+ +F  M  + VR  E +  +V+  C +   +    Q+ 
Sbjct: 259 SVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLH 318

Query: 363 GFLVEGKYGFI 373
             +V  KYGF+
Sbjct: 319 CSVV--KYGFL 327



 Score =  102 bits (253), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 146/330 (44%), Gaps = 12/330 (3%)

Query: 97  HVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQ 156
           +V  + +LI  ++ +  +   LT   +F  M      PN +TF      L+      +  
Sbjct: 158 NVVTWTTLISGYARNSMNDEVLT---LFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGL 214

Query: 157 SVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNA 216
            VH  V+K G    I V NSL+ +Y     +    R LFD+   + VV+W  MI G+   
Sbjct: 215 QVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRK-ARILFDKTEVKSVVTWNSMISGYAAN 273

Query: 217 GKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLG 276
           G   +AL  F  M+   V  +  +  + +  CA+   +     +H  + + G+  D  + 
Sbjct: 274 GLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIR 333

Query: 277 TALIDMYAKCGRVEEGVRVFSSVK-EKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGV 335
           TAL+  Y+KC  + + +R+F  +    NV +W A+I G       EEA+ LF+ M++ GV
Sbjct: 334 TALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGV 393

Query: 336 RADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREA 395
           R +E T   +L+A      V    ++   +V+  Y     V     ++D   + G + EA
Sbjct: 394 RPNEFTYSVILTALP----VISPSEVHAQVVKTNYERSSTVG--TALLDAYVKLGKVEEA 447

Query: 396 FEVMRCMPFDPTKAMWGSLLVSSKSQGDLE 425
            +V   +  D     W ++L      G+ E
Sbjct: 448 AKVFSGID-DKDIVAWSAMLAGYAQTGETE 476



 Score = 92.0 bits (227), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 136/305 (44%), Gaps = 24/305 (7%)

Query: 183 ASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMV 242
           +S RL++    LFD+   RD  S+  ++ GF   G+  +A   F  +   G+  +     
Sbjct: 39  SSSRLYN-AHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFS 97

Query: 243 NALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEK 302
           + L   A       G  +H    + G+  DV +GT+L+D Y K    ++G +VF  +KE+
Sbjct: 98  SVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKER 157

Query: 303 NVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIF 362
           NV TW  +I G A     +E + LF RM+ +G + +  T  A L      G+   G Q+ 
Sbjct: 158 NVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVH 217

Query: 363 GFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTK----AMWGSLLVSS 418
             +V  K G    +     +++L  + G++R+A      + FD T+      W S++   
Sbjct: 218 TVVV--KNGLDKTIPVSNSLINLYLKCGNVRKAR-----ILFDKTEVKSVVTWNSMISGY 270

Query: 419 KSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLG 478
            + G            ++LE     Y + L+ +      +  V K+   +K+ + T+ L 
Sbjct: 271 AANG------------LDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLH 318

Query: 479 CSSVE 483
           CS V+
Sbjct: 319 CSVVK 323


>AT5G50990.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:20739453-20741281 FORWARD
           LENGTH=534
          Length = 534

 Score =  215 bits (548), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 106/295 (35%), Positives = 175/295 (59%), Gaps = 5/295 (1%)

Query: 190 LCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQM-QYAGVAPNRVTMVNALAAC 248
           L +++    + ++V++W +MI G+    ++++AL A + M  +  + PN+ +  ++LAAC
Sbjct: 116 LAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKALKNMLSFTDIKPNKFSFASSLAAC 175

Query: 249 ADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWN 308
           A  G +    W+H  +  +G EL+ +L +AL+D+YAKCG +     VF SVK  +V  WN
Sbjct: 176 ARLGDLHHAKWVHSLMIDSGIELNAILSSALVDVYAKCGDIGTSREVFYSVKRNDVSIWN 235

Query: 309 AVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEG 368
           A+I G A      EAIR+F+ ME + V  D +T L +L+ C+H GL++ G++ FG L+  
Sbjct: 236 AMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTTCSHCGLLEEGKEYFG-LMSR 294

Query: 369 KYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSE 428
           ++   P ++HY  MVDLL R+G ++EA+E++  MP +P   +W SLL SS++  + E  E
Sbjct: 295 RFSIQPKLEHYGAMVDLLGRAGRVKEAYELIESMPIEPDVVIWRSLLSSSRTYKNPELGE 354

Query: 429 FVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVE 483
              +    L  A S  YV LSN+Y+   +W+  +KVR +M    + K  G S +E
Sbjct: 355 IAIQ---NLSKAKSGDYVLLSNIYSSTKKWESAQKVRELMSKEGIRKAKGKSWLE 406


>AT4G15720.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:8949569-8951419 FORWARD
           LENGTH=616
          Length = 616

 Score =  215 bits (547), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 125/395 (31%), Positives = 214/395 (54%), Gaps = 12/395 (3%)

Query: 96  PHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNT-ILPNHYTFPFLFKSLSAPCHFAQ 154
           P+V  + S+I  ++      N+L   S+F  MH +  + PN YTF  +FK+ SA      
Sbjct: 93  PNVVSWTSVISGYNDMGKPQNAL---SMFQKMHEDRPVPPNEYTFASVFKACSALAESRI 149

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTH--RDVVSWTVMIMG 212
            +++HA +   G   +I V +SL+ +Y     +    R++FD M    R+VVSWT MI  
Sbjct: 150 GKNIHARLEISGLRRNIVVSSSLVDMYGKCNDV-ETARRVFDSMIGYGRNVVSWTSMITA 208

Query: 213 FRNAGKFDDALLAFEQMQYAGVA--PNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWE 270
           +    +  +A+  F     A  +   N+  + + ++AC+  G ++ G   H  + R G+E
Sbjct: 209 YAQNARGHEAIELFRSFNAALTSDRANQFMLASVISACSSLGRLQWGKVAHGLVTRGGYE 268

Query: 271 LDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRM 330
            + V+ T+L+DMYAKCG +    ++F  ++  +V ++ ++I   A    GE A++LF+ M
Sbjct: 269 SNTVVATSLLDMYAKCGSLSCAEKIFLRIRCHSVISYTSMIMAKAKHGLGEAAVKLFDEM 328

Query: 331 EQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSG 390
               +  + VTLL VL AC+HSGLV+ G +    + E KYG +P+ +HY C+VD+L R G
Sbjct: 329 VAGRINPNYVTLLGVLHACSHSGLVNEGLEYLSLMAE-KYGVVPDSRHYTCVVDMLGRFG 387

Query: 391 SLREAFEVMRCMPFDPTKA--MWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHL 448
            + EA+E+ + +     +   +WG+LL + +  G +E     +++L++     ++ Y+ L
Sbjct: 388 RVDEAYELAKTIEVGAEQGALLWGALLSAGRLHGRVEIVSEASKRLIQSNQQVTSAYIAL 447

Query: 449 SNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVE 483
           SN YA  G W+D E +R  MK     K+  CS +E
Sbjct: 448 SNAYAVSGGWEDSESLRLEMKRSGNVKERACSWIE 482



 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/288 (31%), Positives = 142/288 (49%), Gaps = 12/288 (4%)

Query: 122 SIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVY 181
           S+F   ++N    +  T  FL   LS   + A    +H   LKLG   D +  N L+  Y
Sbjct: 16  SLFVPQYKNDFF-HLKTKAFLVHKLSESTNAAFTNLLHTLTLKLGFASDTFTVNHLVISY 74

Query: 182 AASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQM-QYAGVAPNRVT 240
                + +  R+LFDEM   +VVSWT +I G+ + GK  +AL  F++M +   V PN  T
Sbjct: 75  VKLKEI-NTARKLFDEMCEPNVVSWTSVISGYNDMGKPQNALSMFQKMHEDRPVPPNEYT 133

Query: 241 MVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSV- 299
             +   AC+      +G  IH  +  +G   ++V+ ++L+DMY KC  VE   RVF S+ 
Sbjct: 134 FASVFKACSALAESRIGKNIHARLEISGLRRNIVVSSSLVDMYGKCNDVETARRVFDSMI 193

Query: 300 -KEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQ--DGVRADEVTLLAVLSACNHSGLVD 356
              +NV +W ++I   A    G EAI LF          RA++  L +V+SAC+  G + 
Sbjct: 194 GYGRNVVSWTSMITAYAQNARGHEAIELFRSFNAALTSDRANQFMLASVISACSSLGRLQ 253

Query: 357 MGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSL---REAFEVMRC 401
            G+   G +  G  G+  N      ++D+ A+ GSL    + F  +RC
Sbjct: 254 WGKVAHGLVTRG--GYESNTVVATSLLDMYAKCGSLSCAEKIFLRIRC 299


>AT3G01580.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:223529-225511 REVERSE
           LENGTH=660
          Length = 660

 Score =  214 bits (546), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 118/373 (31%), Positives = 202/373 (54%), Gaps = 8/373 (2%)

Query: 121 LSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGV 180
           L +F  M  +   PN  T   + ++ +A     Q +  H   ++ G   ++ V  +L+ +
Sbjct: 249 LLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALVDM 308

Query: 181 YAA--SPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAG-VAPN 237
           Y    SP        +F  +  +DVVSW  +I GF   G    ++  F  M       P+
Sbjct: 309 YMKCFSPEE---AYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPD 365

Query: 238 RVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFS 297
            + MV  L +C++ G +E     H ++ + G++ +  +G +L+++Y++CG +    +VF+
Sbjct: 366 AILMVKVLGSCSELGFLEQAKCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFN 425

Query: 298 SVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRM-EQDGVRADEVTLLAVLSACNHSGLVD 356
            +  K+   W ++I G  +   G +A+  FN M +   V+ +EVT L++LSAC+H+GL+ 
Sbjct: 426 GIALKDTVVWTSLITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACSHAGLIH 485

Query: 357 MGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLV 416
            G +IF  +V   Y   PN++HYA +VDLL R G L  A E+ + MPF PT  + G+LL 
Sbjct: 486 EGLRIFKLMV-NDYRLAPNLEHYAVLVDLLGRVGDLDTAIEITKRMPFSPTPQILGTLLG 544

Query: 417 SSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKD 476
           + +   + E +E VA+KL ELE  ++ YY+ +SN+Y   G W++VEK+R  +K R + K 
Sbjct: 545 ACRIHQNGEMAETVAKKLFELESNHAGYYMLMSNVYGVKGEWENVEKLRNSVKQRGIKKG 604

Query: 477 LGCSSVEVEEQGH 489
           L  S +E+  + H
Sbjct: 605 LAESLIEIRRKVH 617



 Score =  149 bits (377), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 98/332 (29%), Positives = 162/332 (48%), Gaps = 9/332 (2%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHM-HRNTILPNHYTFPFLFKSLSAPCH 151
           + +P +  ++S++  F  +   + ++     F  M   + + P+  T   L  + +   +
Sbjct: 122 LEKPDIVTWSSMVSGFEKNGSPYQAV---EFFRRMVMASDVTPDRVTLITLVSACTKLSN 178

Query: 152 FAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIM 211
               + VH  V++ G  +D+ + NSLL  YA S R F     LF  +  +DV+SW+ +I 
Sbjct: 179 SRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKS-RAFKEAVNLFKMIAEKDVISWSTVIA 237

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
            +   G   +ALL F  M   G  PN  T++  L ACA +  +E G   H+   R G E 
Sbjct: 238 CYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLET 297

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRM- 330
           +V + TAL+DMY KC   EE   VFS +  K+V +W A+I G  L      +I  F+ M 
Sbjct: 298 EVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIML 357

Query: 331 EQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSG 390
            ++  R D + ++ VL +C+  G ++  +    +++  KYGF  N    A +V+L +R G
Sbjct: 358 LENNTRPDAILMVKVLGSCSELGFLEQAKCFHSYVI--KYGFDSNPFIGASLVELYSRCG 415

Query: 391 SLREAFEVMRCMPFDPTKAMWGSLLVSSKSQG 422
           SL  A +V   +    T  +W SL+      G
Sbjct: 416 SLGNASKVFNGIALKDT-VVWTSLITGYGIHG 446



 Score =  142 bits (358), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 153/308 (49%), Gaps = 8/308 (2%)

Query: 98  VFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQS 157
           ++ +N+L+++ S        L     F+HM R+   P+++T P   K+          + 
Sbjct: 25  LYQWNTLLKSLSREKQWEEVLYH---FSHMFRDEEKPDNFTLPVALKACGELREVNYGEM 81

Query: 158 VHAHVLKLGHL-HDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNA 216
           +H  V K   L  D+YV +SL+ +Y    R+    R +FDE+   D+V+W+ M+ GF   
Sbjct: 82  IHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALR-MFDELEKPDIVTWSSMVSGFEKN 140

Query: 217 GKFDDALLAFEQMQYAG-VAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVL 275
           G    A+  F +M  A  V P+RVT++  ++AC       +G  +H F+ R G+  D+ L
Sbjct: 141 GSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRRGFSNDLSL 200

Query: 276 GTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGV 335
             +L++ YAK    +E V +F  + EK+V +W+ VI       +  EA+ +FN M  DG 
Sbjct: 201 VNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMDDGT 260

Query: 336 RADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREA 395
             +  T+L VL AC  +  ++ GR+     +  + G    VK    +VD+  +  S  EA
Sbjct: 261 EPNVATVLCVLQACAAAHDLEQGRKTHELAI--RKGLETEVKVSTALVDMYMKCFSPEEA 318

Query: 396 FEVMRCMP 403
           + V   +P
Sbjct: 319 YAVFSRIP 326



 Score =  111 bits (277), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 112/211 (53%), Gaps = 4/211 (1%)

Query: 192 RQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADS 251
           RQ+F EMT R +  W  ++       ++++ L  F  M      P+  T+  AL AC + 
Sbjct: 14  RQMFGEMTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGEL 73

Query: 252 GAVEMGAWIHDFIRRN-GWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAV 310
             V  G  IH F++++     D+ +G++LI MY KCGR+ E +R+F  +++ ++ TW+++
Sbjct: 74  REVNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWSSM 133

Query: 311 IKGLALAKSGEEAIRLFNRM-EQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGK 369
           + G     S  +A+  F RM     V  D VTL+ ++SAC       +GR + GF++  +
Sbjct: 134 VSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVI--R 191

Query: 370 YGFIPNVKHYACMVDLLARSGSLREAFEVMR 400
            GF  ++     +++  A+S + +EA  + +
Sbjct: 192 RGFSNDLSLVNSLLNCYAKSRAFKEAVNLFK 222


>AT4G37170.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:17498580-17500655 REVERSE
           LENGTH=691
          Length = 691

 Score =  214 bits (545), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 111/356 (31%), Positives = 193/356 (54%), Gaps = 2/356 (0%)

Query: 134 PNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQ 193
           PN +T      + +A     + + +H H+++ G   D  + +SL+ +Y          R 
Sbjct: 216 PNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCG-CIDEARN 274

Query: 194 LFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGA 253
           +FD++  +DVVSWT MI  +  + ++ +    F ++  +   PN  T    L ACAD   
Sbjct: 275 IFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTT 334

Query: 254 VEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKG 313
            E+G  +H ++ R G++      ++L+DMY KCG +E    V     + ++ +W ++I G
Sbjct: 335 EELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGG 394

Query: 314 LALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFI 373
            A     +EA++ F+ + + G + D VT + VLSAC H+GLV+ G + F  + E K+   
Sbjct: 395 CAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITE-KHRLS 453

Query: 374 PNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARK 433
               HY C+VDLLARSG   +   V+  MP  P+K +W S+L    + G+++ +E  A++
Sbjct: 454 HTSDHYTCLVDLLARSGRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQE 513

Query: 434 LVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
           L ++EP N   YV ++N+YA  G+W++  K+R  M++  +TK  G S  E++ + H
Sbjct: 514 LFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRH 569



 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 143/320 (44%), Gaps = 34/320 (10%)

Query: 134 PNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLF----- 188
           P   T+  L +  S      + + VH H+   G +  I + N LL +YA    L      
Sbjct: 83  PPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARKV 142

Query: 189 -------SLC------------------RQLFDEMTHRDVVSWTVMIMGFRNAGKFDDAL 223
                   LC                  R+LFDEMT +D  SWT M+ G+    + ++AL
Sbjct: 143 FDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEAL 202

Query: 224 LAFEQMQYA-GVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDM 282
           + +  MQ      PN  T+  A+AA A    +  G  IH  I R G + D VL ++L+DM
Sbjct: 203 VLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDM 262

Query: 283 YAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTL 342
           Y KCG ++E   +F  + EK+V +W ++I     +    E   LF+ +     R +E T 
Sbjct: 263 YGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTF 322

Query: 343 LAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCM 402
             VL+AC      ++G+Q+ G++   + GF P     + +VD+  + G++  A  V+   
Sbjct: 323 AGVLNACADLTTEELGKQVHGYMT--RVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGC 380

Query: 403 PFDPTKAMWGSLLVSSKSQG 422
           P  P    W SL+      G
Sbjct: 381 P-KPDLVSWTSLIGGCAQNG 399



 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 92/185 (49%), Gaps = 16/185 (8%)

Query: 159 HAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGK 218
           H++  KL  LH   +  +L   +A+  R     ++ F+   H D     V++     A +
Sbjct: 3   HSNARKLTTLHGFILKRNLSSFHASLKRFSD--KKFFNP-NHED---GGVVVERLCRANR 56

Query: 219 FDDAL-------LAFEQMQYAGVA--PNRVTMVNALAACADSGAVEMGAWIHDFIRRNGW 269
           F +A+       L  E +Q  G A  P   T  N +  C+ + A+E G  +H+ IR +G+
Sbjct: 57  FGEAIDVLCGQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGF 116

Query: 270 ELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNR 329
              +V+   L+ MYAKCG + +  +VF  +  +++ +WN ++ G A     EEA +LF+ 
Sbjct: 117 VPGIVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDE 176

Query: 330 M-EQD 333
           M E+D
Sbjct: 177 MTEKD 181


>AT3G02330.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:473881-476592 REVERSE
           LENGTH=903
          Length = 903

 Score =  214 bits (544), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 125/415 (30%), Positives = 222/415 (53%), Gaps = 25/415 (6%)

Query: 95  RPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQ 154
           R     +N++I A   +   + +L    +F  M R+ I P+ +TF  + K+ +       
Sbjct: 445 RRDAVSWNAIIAAHEQNGKGYETLF---LFVSMLRSRIEPDEFTFGSILKACTGG-SLGY 500

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAAS----------PRLF-----SLCRQLFDEMT 199
              +H+ ++K G   +  V  SL+ +Y+             R F     S   +  ++M 
Sbjct: 501 GMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMH 560

Query: 200 HRDV----VSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVE 255
           ++ +    VSW  +I G+    + +DA + F +M   G+ P++ T    L  CA+  +  
Sbjct: 561 NKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAG 620

Query: 256 MGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLA 315
           +G  IH  + +   + DV + + L+DMY+KCG + +   +F     ++  TWNA+I G A
Sbjct: 621 LGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYA 680

Query: 316 LAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPN 375
               GEEAI+LF RM  + ++ + VT +++L AC H GL+D G + F ++++  YG  P 
Sbjct: 681 HHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYF-YMMKRDYGLDPQ 739

Query: 376 VKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLL-VSSKSQGDLEFSEFVARKL 434
           + HY+ MVD+L +SG ++ A E++R MPF+    +W +LL V +  + ++E +E     L
Sbjct: 740 LPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAAL 799

Query: 435 VELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
           + L+P +S+ Y  LSN+YA+ G W+ V  +R  M+  +L K+ GCS VE++++ H
Sbjct: 800 LRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVELKDELH 854



 Score =  116 bits (290), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 156/334 (46%), Gaps = 15/334 (4%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P   V  +NS++  +     +  SL  + +F  M R  I  +  TF  + K  S     
Sbjct: 140 MPVRDVVSWNSMLSGY---LQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDT 196

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMG 212
           +    +H  V+++G   D+   ++LL +YA   R     R +F  +  ++ VSW+ +I G
Sbjct: 197 SLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLR-VFQGIPEKNSVSWSAIIAG 255

Query: 213 FRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELD 272
                    AL  F++MQ      ++    + L +CA    + +G  +H    ++ +  D
Sbjct: 256 CVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAAD 315

Query: 273 VVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQ 332
            ++ TA +DMYAKC  +++   +F + +  N  ++NA+I G +  + G +A+ LF+R+  
Sbjct: 316 GIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMS 375

Query: 333 DGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSL 392
            G+  DE++L  V  AC     +  G QI+G  ++        V + A  +D+  +  +L
Sbjct: 376 SGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAA--IDMYGKCQAL 433

Query: 393 REAFEVMRCMPFDPTK----AMWGSLLVSSKSQG 422
            EAF V     FD  +      W +++ + +  G
Sbjct: 434 AEAFRV-----FDEMRRRDAVSWNAIIAAHEQNG 462



 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 128/286 (44%), Gaps = 6/286 (2%)

Query: 115 HNSLTPLSI--FAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIY 172
            N+L  L++  F  M +     +   +  + +S +A         +HAH LK     D  
Sbjct: 258 QNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGI 317

Query: 173 VHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYA 232
           V  + L +YA    +    + LFD   + +  S+  MI G+        ALL F ++  +
Sbjct: 318 VRTATLDMYAKCDNMQD-AQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSS 376

Query: 233 GVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEG 292
           G+  + +++     ACA    +  G  I+    ++   LDV +  A IDMY KC  + E 
Sbjct: 377 GLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEA 436

Query: 293 VRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHS 352
            RVF  ++ ++  +WNA+I        G E + LF  M +  +  DE T  ++L AC   
Sbjct: 437 FRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACT-G 495

Query: 353 GLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEV 398
           G +  G +I   +V  K G   N      ++D+ ++ G + EA ++
Sbjct: 496 GSLGYGMEIHSSIV--KSGMASNSSVGCSLIDMYSKCGMIEEAEKI 539



 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 122/289 (42%), Gaps = 34/289 (11%)

Query: 138 TFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDE 197
            F F+FK  +        +  HAH++  G     +V N LL VY  S R F     +FD+
Sbjct: 50  NFSFVFKECAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNS-RDFVSASMVFDK 108

Query: 198 MTHRDVVSWTVMIMGFRNA-------------------------------GKFDDALLAF 226
           M  RDVVSW  MI G+  +                               G+   ++  F
Sbjct: 109 MPLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVF 168

Query: 227 EQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKC 286
             M   G+  +  T    L  C+      +G  IH  + R G + DVV  +AL+DMYAK 
Sbjct: 169 VDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKG 228

Query: 287 GRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVL 346
            R  E +RVF  + EKN  +W+A+I G         A++ F  M++      +    +VL
Sbjct: 229 KRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVL 288

Query: 347 SACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREA 395
            +C     + +G Q+    ++  +     V+     +D+ A+  ++++A
Sbjct: 289 RSCAALSELRLGGQLHAHALKSDFAADGIVR--TATLDMYAKCDNMQDA 335


>AT5G65570.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:26203968-26206184 FORWARD
           LENGTH=738
          Length = 738

 Score =  212 bits (540), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 126/398 (31%), Positives = 206/398 (51%), Gaps = 7/398 (1%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           V    V +  +LI  +S       ++     F  M    + PN YT+  +  S       
Sbjct: 227 VEEKDVVLITALIVGYSQKGEDTEAVKA---FQSMLVEKVQPNEYTYASVLISCGNLKDI 283

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMG 212
              + +H  ++K G    +    SLL +Y     L     ++F  + + + VSWT +I G
Sbjct: 284 GNGKLIHGLMVKSGFESALASQTSLLTMYLRCS-LVDDSLRVFKCIEYPNQVSWTSLISG 342

Query: 213 FRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELD 272
               G+ + AL+ F +M    + PN  T+ +AL  C++    E G  IH  + + G++ D
Sbjct: 343 LVQNGREEMALIEFRKMMRDSIKPNSFTLSSALRGCSNLAMFEEGRQIHGIVTKYGFDRD 402

Query: 273 VVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQ 332
              G+ LID+Y KCG  +    VF ++ E +V + N +I   A    G EA+ LF RM  
Sbjct: 403 KYAGSGLIDLYGKCGCSDMARLVFDTLSEVDVISLNTMIYSYAQNGFGREALDLFERMIN 462

Query: 333 DGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSL 392
            G++ ++VT+L+VL ACN+S LV+ G ++F    + K     +  HYACMVDLL R+G L
Sbjct: 463 LGLQPNDVTVLSVLLACNNSRLVEEGCELFDSFRKDKIMLTND--HYACMVDLLGRAGRL 520

Query: 393 REAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLY 452
            EA E++     +P   +W +LL + K    +E +E + RK++E+EP +    + +SNLY
Sbjct: 521 EEA-EMLTTEVINPDLVLWRTLLSACKVHRKVEMAERITRKILEIEPGDEGTLILMSNLY 579

Query: 453 AEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGHT 490
           A  G+W+ V +++  MKD +L K+   S VE+ ++ HT
Sbjct: 580 ASTGKWNRVIEMKSKMKDMKLKKNPAMSWVEINKETHT 617



 Score =  140 bits (352), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 153/298 (51%), Gaps = 13/298 (4%)

Query: 97  HVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQ 156
           H+  +NSLI   ++   H  S   + ++  M  N +LP+ YT   +FK+ S      +AQ
Sbjct: 129 HIVTWNSLI---AYLIKHRRSKEAVEMYRLMITNNVLPDEYTLSSVFKAFSDLSLEKEAQ 185

Query: 157 SVHAHVLKLG-HLHDIYVHNSLLGVYAASPRLFSLCRQ---LFDEMTHRDVVSWTVMIMG 212
             H   + LG  + +++V ++L+ +Y      F   R+   + D +  +DVV  T +I+G
Sbjct: 186 RSHGLAVILGLEVSNVFVGSALVDMYVK----FGKTREAKLVLDRVEEKDVVLITALIVG 241

Query: 213 FRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELD 272
           +   G+  +A+ AF+ M    V PN  T  + L +C +   +  G  IH  + ++G+E  
Sbjct: 242 YSQKGEDTEAVKAFQSMLVEKVQPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSGFESA 301

Query: 273 VVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQ 332
           +   T+L+ MY +C  V++ +RVF  ++  N  +W ++I GL      E A+  F +M +
Sbjct: 302 LASQTSLLTMYLRCSLVDDSLRVFKCIEYPNQVSWTSLISGLVQNGREEMALIEFRKMMR 361

Query: 333 DGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSG 390
           D ++ +  TL + L  C++  + + GRQI G +   KYGF  +    + ++DL  + G
Sbjct: 362 DSIKPNSFTLSSALRGCSNLAMFEEGRQIHGIVT--KYGFDRDKYAGSGLIDLYGKCG 417



 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 135/304 (44%), Gaps = 6/304 (1%)

Query: 133 LPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCR 192
           L   + F  L +        +  +++ AH+LK G   +I    S L   +         R
Sbjct: 62  LTTTHNFSQLLRQCIDERSISGIKTIQAHMLKSGFPAEI--SGSKLVDASLKCGDIDYAR 119

Query: 193 QLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSG 252
           Q+FD M+ R +V+W  +I       +  +A+  +  M    V P+  T+ +   A +D  
Sbjct: 120 QVFDGMSERHIVTWNSLIAYLIKHRRSKEAVEMYRLMITNNVLPDEYTLSSVFKAFSDLS 179

Query: 253 AVEMGAWIHDFIRRNGWEL-DVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVI 311
             +     H      G E+ +V +G+AL+DMY K G+  E   V   V+EK+V    A+I
Sbjct: 180 LEKEAQRSHGLAVILGLEVSNVFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALI 239

Query: 312 KGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYG 371
            G +      EA++ F  M  + V+ +E T  +VL +C +   +  G+ I G +V  K G
Sbjct: 240 VGYSQKGEDTEAVKAFQSMLVEKVQPNEYTYASVLISCGNLKDIGNGKLIHGLMV--KSG 297

Query: 372 FIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVA 431
           F   +     ++ +  R   + ++  V +C+ + P +  W SL+      G  E +    
Sbjct: 298 FESALASQTSLLTMYLRCSLVDDSLRVFKCIEY-PNQVSWTSLISGLVQNGREEMALIEF 356

Query: 432 RKLV 435
           RK++
Sbjct: 357 RKMM 360


>AT2G40720.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:16987269-16989851 FORWARD
           LENGTH=860
          Length = 860

 Score =  212 bits (540), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 113/330 (34%), Positives = 190/330 (57%), Gaps = 2/330 (0%)

Query: 158 VHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAG 217
           VH  ++K G + +++V +SL+ +Y+    L  +  ++F  M+  ++V+W  MI  +    
Sbjct: 498 VHGSMIKTGLVLNVFVGSSLIDLYSKCG-LPEMALKVFTSMSTENMVAWNSMISCYSRNN 556

Query: 218 KFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGT 277
             + ++  F  M   G+ P+ V++ + L A + + ++  G  +H +  R G   D  L  
Sbjct: 557 LPELSIDLFNLMLSQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTLRLGIPSDTHLKN 616

Query: 278 ALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRA 337
           ALIDMY KCG  +    +F  ++ K++ TWN +I G         A+ LF+ M++ G   
Sbjct: 617 ALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMIYGYGSHGDCITALSLFDEMKKAGESP 676

Query: 338 DEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFE 397
           D+VT L+++SACNHSG V+ G+ IF F+ +  YG  PN++HYA MVDLL R+G L EA+ 
Sbjct: 677 DDVTFLSLISACNHSGFVEEGKNIFEFMKQ-DYGIEPNMEHYANMVDLLGRAGLLEEAYS 735

Query: 398 VMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGR 457
            ++ MP +   ++W  LL +S++  ++E     A KL+ +EP   + YV L NLY E G 
Sbjct: 736 FIKAMPIEADSSIWLCLLSASRTHHNVELGILSAEKLLRMEPERGSTYVQLINLYMEAGL 795

Query: 458 WDDVEKVRGMMKDRQLTKDLGCSSVEVEEQ 487
            ++  K+ G+MK++ L K  GCS +EV ++
Sbjct: 796 KNEAAKLLGLMKEKGLHKQPGCSWIEVSDR 825



 Score =  129 bits (323), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 182/379 (48%), Gaps = 18/379 (4%)

Query: 51  QQIQAQLILHNLQSNPTIAHHFITVCQSHXXXXXXXXXXXXXVPRPHVFIFNSLIRAFSH 110
           +QI   ++   L ++P +    +++  S              V    + I+N+++ A++ 
Sbjct: 292 RQIHCDVVKMGLHNDPYVCTSLLSM-YSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAE 350

Query: 111 SHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHD 170
           + + +++L    +F  M + ++LP+ +T   +    S    +   +SVHA + K      
Sbjct: 351 NDYGYSAL---DLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQST 407

Query: 171 IYVHNSLLGVYA---ASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFE 227
             + ++LL +Y+     P  +     +F  M  +D+V+W  +I G    GKF +AL  F 
Sbjct: 408 STIESALLTLYSKCGCDPDAY----LVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFG 463

Query: 228 QMQYA--GVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAK 285
            M+     + P+   M +   ACA   A+  G  +H  + + G  L+V +G++LID+Y+K
Sbjct: 464 DMKDDDDSLKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSK 523

Query: 286 CGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAV 345
           CG  E  ++VF+S+  +N+  WN++I   +     E +I LFN M   G+  D V++ +V
Sbjct: 524 CGLPEMALKVFTSMSTENMVAWNSMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSITSV 583

Query: 346 LSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYA-CMVDLLARSGSLREAFEVMRCMPF 404
           L A + +  +  G+ + G+ +  + G IP+  H    ++D+  + G  + A  + + M  
Sbjct: 584 LVAISSTASLLKGKSLHGYTL--RLG-IPSDTHLKNALIDMYVKCGFSKYAENIFKKMQ- 639

Query: 405 DPTKAMWGSLLVSSKSQGD 423
             +   W  ++    S GD
Sbjct: 640 HKSLITWNLMIYGYGSHGD 658



 Score =  115 bits (287), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 156/338 (46%), Gaps = 21/338 (6%)

Query: 102 NSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAH 161
           NS IRA      +  +L   S   H   +    + +TFP L K+ SA  + +  +++H  
Sbjct: 28  NSGIRALIQKGEYLQALHLYS--KHDGSSPFWTSVFTFPSLLKACSALTNLSYGKTIHGS 85

Query: 162 VLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTH-------RDVVSWTVMIMGFR 214
           V+ LG  +D ++  SL+ +Y     L     Q+FD  +        RDV  W  MI G+ 
Sbjct: 86  VVVLGWRYDPFIATSLVNMYVKCGFL-DYAVQVFDGWSQSQSGVSARDVTVWNSMIDGYF 144

Query: 215 NAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAV--EMGAWIHDFIRRNGWELD 272
              +F + +  F +M   GV P+  ++   ++     G    E G  IH F+ RN  + D
Sbjct: 145 KFRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSVMCKEGNFRREEGKQIHGFMLRNSLDTD 204

Query: 273 VVLGTALIDMYAKCGRVEEGVRVFSSVKEK-NVFTWNAVIKGLALAKSGEEAIRLFNRME 331
             L TALIDMY K G   +  RVF  +++K NV  WN +I G   +   E ++ L+   +
Sbjct: 205 SFLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVVLWNVMIVGFGGSGICESSLDLYMLAK 264

Query: 332 QDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYAC--MVDLLARS 389
            + V+    +    L AC+ S     GRQI   +V+      P    Y C  ++ + ++ 
Sbjct: 265 NNSVKLVSTSFTGALGACSQSENSGFGRQIHCDVVKMGLHNDP----YVCTSLLSMYSKC 320

Query: 390 GSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFS 427
           G + EA  V  C+  D    +W + +V++ ++ D  +S
Sbjct: 321 GMVGEAETVFSCV-VDKRLEIWNA-MVAAYAENDYGYS 356



 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 141/325 (43%), Gaps = 8/325 (2%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           V    V ++NS+I  +         +     F  M    + P+ ++   +   +    +F
Sbjct: 128 VSARDVTVWNSMIDGYFKFRRFKEGV---GCFRRMLVFGVRPDAFSLSIVVSVMCKEGNF 184

Query: 153 --AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMI 210
              + + +H  +L+     D ++  +L+ +Y          R   +     +VV W VMI
Sbjct: 185 RREEGKQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVVLWNVMI 244

Query: 211 MGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWE 270
           +GF  +G  + +L  +   +   V     +   AL AC+ S     G  IH  + + G  
Sbjct: 245 VGFGGSGICESSLDLYMLAKNNSVKLVSTSFTGALGACSQSENSGFGRQIHCDVVKMGLH 304

Query: 271 LDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRM 330
            D  + T+L+ MY+KCG V E   VFS V +K +  WNA++   A    G  A+ LF  M
Sbjct: 305 NDPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAENDYGYSALDLFGFM 364

Query: 331 EQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSG 390
            Q  V  D  TL  V+S C+  GL + G+ +   L +        ++  + ++ L ++ G
Sbjct: 365 RQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTIE--SALLTLYSKCG 422

Query: 391 SLREAFEVMRCMPFDPTKAMWGSLL 415
              +A+ V + M  +     WGSL+
Sbjct: 423 CDPDAYLVFKSME-EKDMVAWGSLI 446


>AT3G14730.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:4949385-4951346 REVERSE
           LENGTH=653
          Length = 653

 Score =  211 bits (538), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 115/400 (28%), Positives = 205/400 (51%), Gaps = 9/400 (2%)

Query: 95  RPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQ 154
           R    ++N+L+  +S      ++L    +F+ M    +  + +T   +  + +       
Sbjct: 224 RDDSVLWNALVNGYSQIFRFEDALL---VFSKMREEGVGVSRHTITSVLSAFTVSGDIDN 280

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFR 214
            +S+H   +K G   DI V N+L+ +Y  S +       +F+ M  RD+ +W  ++    
Sbjct: 281 GRSIHGLAVKTGSGSDIVVSNALIDMYGKS-KWLEEANSIFEAMDERDLFTWNSVLCVHD 339

Query: 215 NAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGW----E 270
             G  D  L  FE+M  +G+ P+ VT+   L  C    ++  G  IH ++  +G      
Sbjct: 340 YCGDHDGTLALFERMLCSGIRPDIVTLTTVLPTCGRLASLRQGREIHGYMIVSGLLNRKS 399

Query: 271 LDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRM 330
            +  +  +L+DMY KCG + +   VF S++ K+  +WN +I G  +   GE A+ +F+ M
Sbjct: 400 SNEFIHNSLMDMYVKCGDLRDARMVFDSMRVKDSASWNIMINGYGVQSCGELALDMFSCM 459

Query: 331 EQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSG 390
            + GV+ DE+T + +L AC+HSG ++ GR     + E  Y  +P   HYAC++D+L R+ 
Sbjct: 460 CRAGVKPDEITFVGLLQACSHSGFLNEGRNFLAQM-ETVYNILPTSDHYACVIDMLGRAD 518

Query: 391 SLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSN 450
            L EA+E+    P      +W S+L S +  G+ + +    ++L ELEP +   YV +SN
Sbjct: 519 KLEEAYELAISKPICDNPVVWRSILSSCRLHGNKDLALVAGKRLHELEPEHCGGYVLMSN 578

Query: 451 LYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGHT 490
           +Y E G++++V  VR  M+ + + K  GCS + ++   HT
Sbjct: 579 VYVEAGKYEEVLDVRDAMRQQNVKKTPGCSWIVLKNGVHT 618



 Score =  157 bits (397), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/316 (32%), Positives = 161/316 (50%), Gaps = 25/316 (7%)

Query: 98  VFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQS 157
           VF +N+LI  F     + + L  +  +  M  N ILP+ YTFP L K  S     +  + 
Sbjct: 126 VFGYNALISGFVV---NGSPLDAMETYREMRANGILPDKYTFPSLLKG-SDAMELSDVKK 181

Query: 158 VHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSL--CRQLFDEMTHRD-VVSWTVMIMGFR 214
           VH    KLG   D YV + L+  Y+   +  S+   +++FDE+  RD  V W  ++ G+ 
Sbjct: 182 VHGLAFKLGFDSDCYVGSGLVTSYS---KFMSVEDAQKVFDELPDRDDSVLWNALVNGYS 238

Query: 215 NAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVV 274
              +F+DALL F +M+  GV  +R T+ + L+A   SG ++ G  IH    + G   D+V
Sbjct: 239 QIFRFEDALLVFSKMREEGVGVSRHTITSVLSAFTVSGDIDNGRSIHGLAVKTGSGSDIV 298

Query: 275 LGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDG 334
           +  ALIDMY K   +EE   +F ++ E+++FTWN+V+         +  + LF RM   G
Sbjct: 299 VSNALIDMYGKSKWLEEANSIFEAMDERDLFTWNSVLCVHDYCGDHDGTLALFERMLCSG 358

Query: 335 VRADEVTLLAVLSACNHSGLVDMGRQIFGFLV-------EGKYGFIPNVKHYACMVDLLA 387
           +R D VTL  VL  C     +  GR+I G+++       +    FI N      ++D+  
Sbjct: 359 IRPDIVTLTTVLPTCGRLASLRQGREIHGYMIVSGLLNRKSSNEFIHN-----SLMDMYV 413

Query: 388 RSGSLREA---FEVMR 400
           + G LR+A   F+ MR
Sbjct: 414 KCGDLRDARMVFDSMR 429



 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 133/278 (47%), Gaps = 16/278 (5%)

Query: 152 FAQAQSVHAHVLKLGHLHDI-YVHNSLLGVYAASPRLFSLCRQ--LFDEMTHRDVVSWTV 208
           +   Q +H  +++ G L D      SL+ +YA       L R+  L    + RDV  +  
Sbjct: 76  YVSGQQIHGFMVRKGFLDDSPRAGTSLVNMYAKC----GLMRRAVLVFGGSERDVFGYNA 131

Query: 209 MIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMG--AWIHDFIRR 266
           +I GF   G   DA+  + +M+  G+ P++ T  + L     S A+E+     +H    +
Sbjct: 132 LISGFVVNGSPLDAMETYREMRANGILPDKYTFPSLLKG---SDAMELSDVKKVHGLAFK 188

Query: 267 NGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEK-NVFTWNAVIKGLALAKSGEEAIR 325
            G++ D  +G+ L+  Y+K   VE+  +VF  + ++ +   WNA++ G +     E+A+ 
Sbjct: 189 LGFDSDCYVGSGLVTSYSKFMSVEDAQKVFDELPDRDDSVLWNALVNGYSQIFRFEDALL 248

Query: 326 LFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDL 385
           +F++M ++GV     T+ +VLSA   SG +D GR I G  V  K G   ++     ++D+
Sbjct: 249 VFSKMREEGVGVSRHTITSVLSAFTVSGDIDNGRSIHGLAV--KTGSGSDIVVSNALIDM 306

Query: 386 LARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGD 423
             +S  L EA  +   M  +     W S+L      GD
Sbjct: 307 YGKSKWLEEANSIFEAMD-ERDLFTWNSVLCVHDYCGD 343



 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 88/180 (48%), Gaps = 5/180 (2%)

Query: 237 NRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVV-LGTALIDMYAKCGRVEEGVRV 295
           N  T +  L  CA       G  IH F+ R G+  D    GT+L++MYAKCG +   V V
Sbjct: 59  NVATCIATLQRCAQRKDYVSGQQIHGFMVRKGFLDDSPRAGTSLVNMYAKCGLMRRAVLV 118

Query: 296 FSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLV 355
           F    E++VF +NA+I G  +  S  +A+  +  M  +G+  D+ T  ++L   +   L 
Sbjct: 119 FGG-SERDVFGYNALISGFVVNGSPLDAMETYREMRANGILPDKYTFPSLLKGSDAMELS 177

Query: 356 DMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLL 415
           D+ +++ G     K GF  +    + +V   ++  S+ +A +V   +P      +W +L+
Sbjct: 178 DV-KKVHGLAF--KLGFDSDCYVGSGLVTSYSKFMSVEDAQKVFDELPDRDDSVLWNALV 234


>AT5G37570.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr5:14924494-14926146 REVERSE
           LENGTH=550
          Length = 550

 Score =  211 bits (537), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 112/314 (35%), Positives = 183/314 (58%), Gaps = 5/314 (1%)

Query: 169 HDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQ 228
            DI  + S++  YA    + S  R LF+E    DV +W+ +I+G+   G+ ++A   F +
Sbjct: 236 RDIISYTSMIDGYAKGGDMVS-ARDLFEEARGVDVRAWSALILGYAQNGQPNEAFKVFSE 294

Query: 229 MQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFI--RRNGWELDVVLGTALIDMYAKC 286
           M    V P+   MV  ++AC+  G  E+   +  ++  R N +    V+  ALIDM AKC
Sbjct: 295 MCAKNVKPDEFIMVGLMSACSQMGCFELCEKVDSYLHQRMNKFSSHYVV-PALIDMNAKC 353

Query: 287 GRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVL 346
           G ++   ++F  + ++++ ++ ++++G+A+   G EAIRLF +M  +G+  DEV    +L
Sbjct: 354 GHMDRAAKLFEEMPQRDLVSYCSMMEGMAIHGCGSEAIRLFEKMVDEGIVPDEVAFTVIL 413

Query: 347 SACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDP 406
             C  S LV+ G + F  L+  KY  + +  HY+C+V+LL+R+G L+EA+E+++ MPF+ 
Sbjct: 414 KVCGQSRLVEEGLRYFE-LMRKKYSILASPDHYSCIVNLLSRTGKLKEAYELIKSMPFEA 472

Query: 407 TKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRG 466
             + WGSLL      G+ E +E VAR L ELEP ++  YV LSN+YA + RW DV  +R 
Sbjct: 473 HASAWGSLLGGCSLHGNTEIAEVVARHLFELEPQSAGSYVLLSNIYAALDRWTDVAHLRD 532

Query: 467 MMKDRQLTKDLGCS 480
            M +  +TK  G S
Sbjct: 533 KMNENGITKICGRS 546



 Score =  135 bits (339), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 171/369 (46%), Gaps = 19/369 (5%)

Query: 38  TLLKDFCHSRLHVQQIQAQLILHNLQSNPTIAHHFITVCQSHXXXXXXXXXXXXXVPRPH 97
           TL K  C S +H+ QI A++I   L+ +  +   FI+   S              VP P 
Sbjct: 15  TLFK-LCKSEIHLNQIHARIIRKGLEQDQNLISIFISSSSSSSSSLSYSSSVFERVPSPG 73

Query: 98  VFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTIL-PNHYTFPFLFKSLSAPCHFAQAQ 156
            +++N LI+ +S+      +   +SI   M R  +  P+ YTFP + K  S         
Sbjct: 74  TYLWNHLIKGYSNKFLFFET---VSILMRMMRTGLARPDEYTFPLVMKVCSNNGQVRVGS 130

Query: 157 SVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNA 216
           SVH  VL++G   D+ V  S +  Y     LFS  R++F EM  R+ VSWT +++ +  +
Sbjct: 131 SVHGLVLRIGFDKDVVVGTSFVDFYGKCKDLFS-ARKVFGEMPERNAVSWTALVVAYVKS 189

Query: 217 GKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLG 276
           G+ ++A   F+ M    +      +V+ L    D   V       +  +R     D++  
Sbjct: 190 GELEEAKSMFDLMPERNLGSWN-ALVDGLVKSGD--LVNAKKLFDEMPKR-----DIISY 241

Query: 277 TALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVR 336
           T++ID YAK G +     +F   +  +V  W+A+I G A      EA ++F+ M    V+
Sbjct: 242 TSMIDGYAKGGDMVSARDLFEEARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVK 301

Query: 337 ADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYA--CMVDLLARSGSLRE 394
            DE  ++ ++SAC+  G  ++  ++  +L +    F     HY    ++D+ A+ G +  
Sbjct: 302 PDEFIMVGLMSACSQMGCFELCEKVDSYLHQRMNKF---SSHYVVPALIDMNAKCGHMDR 358

Query: 395 AFEVMRCMP 403
           A ++   MP
Sbjct: 359 AAKLFEEMP 367



 Score = 89.0 bits (219), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 89/353 (25%), Positives = 157/353 (44%), Gaps = 42/353 (11%)

Query: 134 PNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQ 193
           P+  +   LFK   +  H  Q   +HA +++ G   D  + +  +   ++S    S    
Sbjct: 8   PSLLSLETLFKLCKSEIHLNQ---IHARIIRKGLEQDQNLISIFISSSSSSSSSLSYSSS 64

Query: 194 LFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVA-PNRVTMVNALAACADSG 252
           +F+ +       W  +I G+ N   F + +    +M   G+A P+  T    +  C+++G
Sbjct: 65  VFERVPSPGTYLWNHLIKGYSNKFLFFETVSILMRMMRTGLARPDEYTFPLVMKVCSNNG 124

Query: 253 AVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIK 312
            V +G+ +H  + R G++ DVV+GT+ +D Y KC  +    +VF  + E+N  +W A++ 
Sbjct: 125 QVRVGSSVHGLVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKVFGEMPERNAVSWTALV- 183

Query: 313 GLALAKSG--EEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKY 370
            +A  KSG  EEA  +F+ M +  + +              + LVD G    G LV  K 
Sbjct: 184 -VAYVKSGELEEAKSMFDLMPERNLGS-------------WNALVD-GLVKSGDLVNAKK 228

Query: 371 GF--IP--NVKHYACMVDLLARSG---SLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGD 423
            F  +P  ++  Y  M+D  A+ G   S R+ FE  R +        W +L++     G 
Sbjct: 229 LFDEMPKRDIISYTSMIDGYAKGGDMVSARDLFEEARGVDVRA----WSALILGYAQNGQ 284

Query: 424 LE-----FSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDR 471
                  FSE  A+ +      +    V L +  ++MG ++  EKV   +  R
Sbjct: 285 PNEAFKVFSEMCAKNV----KPDEFIMVGLMSACSQMGCFELCEKVDSYLHQR 333


>AT1G03510.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:876258-877547 REVERSE
           LENGTH=429
          Length = 429

 Score =  211 bits (536), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 128/412 (31%), Positives = 207/412 (50%), Gaps = 36/412 (8%)

Query: 103 SLIRAFSHSHHHHNSLTPLSIFAHMHRNTILP-NHYTFPFLFKSLSAPCHFAQAQSVHAH 161
           SL +  S   +  N    L++F  MH +  LP + + F    KS +A        SVHAH
Sbjct: 14  SLTKQLSSYANQGNHEQALNLFLQMHSSFALPLDAHVFSLALKSCAAAFRPVLGGSVHAH 73

Query: 162 VLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDD 221
            +K   L + +V  +LL +Y     + S  R+LFDE+  R+ V W  MI  + + GK  +
Sbjct: 74  SVKSNFLSNPFVGCALLDMYGKCLSV-SHARKLFDEIPQRNAVVWNAMISHYTHCGKVKE 132

Query: 222 ALLAFEQM----------------------QYAGV-----------APNRVTMVNALAAC 248
           A+  +E M                       Y  +            PN +T++  ++AC
Sbjct: 133 AVELYEAMDVMPNESSFNAIIKGLVGTEDGSYRAIEFYRKMIEFRFKPNLITLLALVSAC 192

Query: 249 ADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWN 308
           +  GA  +   IH +  RN  E    L + L++ Y +CG +     VF S+++++V  W+
Sbjct: 193 SAIGAFRLIKEIHSYAFRNLIEPHPQLKSGLVEAYGRCGSIVYVQLVFDSMEDRDVVAWS 252

Query: 309 AVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEG 368
           ++I   AL    E A++ F  ME   V  D++  L VL AC+H+GL D     F  + +G
Sbjct: 253 SLISAYALHGDAESALKTFQEMELAKVTPDDIAFLNVLKACSHAGLADEALVYFKRM-QG 311

Query: 369 KYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSE 428
            YG   +  HY+C+VD+L+R G   EA++V++ MP  PT   WG+LL + ++ G++E +E
Sbjct: 312 DYGLRASKDHYSCLVDVLSRVGRFEEAYKVIQAMPEKPTAKTWGALLGACRNYGEIELAE 371

Query: 429 FVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCS 480
             AR+L+ +EP N A YV L  +Y  +GR ++ E++R  MK+  +    G S
Sbjct: 372 IAARELLMVEPENPANYVLLGKIYMSVGRQEEAERLRLKMKESGVKVSPGSS 423



 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 120/274 (43%), Gaps = 25/274 (9%)

Query: 96  PHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQA 155
           P+   FN++I+    +     S   +  +  M      PN  T   L  + SA   F   
Sbjct: 144 PNESSFNAIIKGLVGTED--GSYRAIEFYRKMIEFRFKPNLITLLALVSACSAIGAFRLI 201

Query: 156 QSVHAHVLKLGHLHDIYVHNSLL-GVYAASPRLFSLC--RQLFDEMTHRDVVSWTVMIMG 212
           + +H++  +    + I  H  L  G+  A  R  S+   + +FD M  RDVV+W+ +I  
Sbjct: 202 KEIHSYAFR----NLIEPHPQLKSGLVEAYGRCGSIVYVQLVFDSMEDRDVVAWSSLISA 257

Query: 213 FRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSG-AVEMGAWIHDFIRRNGWEL 271
           +   G  + AL  F++M+ A V P+ +  +N L AC+ +G A E   +        G   
Sbjct: 258 YALHGDAESALKTFQEMELAKVTPDDIAFLNVLKACSHAGLADEALVYFKRMQGDYGLRA 317

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEK-NVFTWNAVIKGLALAKSGEEAIRLFNRM 330
                + L+D+ ++ GR EE  +V  ++ EK    TW A++           A R +  +
Sbjct: 318 SKDHYSCLVDVLSRVGRFEEAYKVIQAMPEKPTAKTWGALLG----------ACRNYGEI 367

Query: 331 EQDGVRADEVTLLAVLSACNHSGL----VDMGRQ 360
           E   + A E+ ++   +  N+  L    + +GRQ
Sbjct: 368 ELAEIAARELLMVEPENPANYVLLGKIYMSVGRQ 401



 Score = 69.3 bits (168), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 116/278 (41%), Gaps = 39/278 (14%)

Query: 203 VVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVN-ALAACADSGAVEMGAWIH 261
           ++S T  +  + N G  + AL  F QM  +   P    + + AL +CA +    +G  +H
Sbjct: 12  LISLTKQLSSYANQGNHEQALNLFLQMHSSFALPLDAHVFSLALKSCAAAFRPVLGGSVH 71

Query: 262 DFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTW-------------- 307
               ++ +  +  +G AL+DMY KC  V    ++F  + ++N   W              
Sbjct: 72  AHSVKSNFLSNPFVGCALLDMYGKCLSVSHARKLFDEIPQRNAVVWNAMISHYTHCGKVK 131

Query: 308 ------------------NAVIKGLALAKSGE-EAIRLFNRMEQDGVRADEVTLLAVLSA 348
                             NA+IKGL   + G   AI  + +M +   + + +TLLA++SA
Sbjct: 132 EAVELYEAMDVMPNESSFNAIIKGLVGTEDGSYRAIEFYRKMIEFRFKPNLITLLALVSA 191

Query: 349 CNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTK 408
           C+  G   + ++I  +         P +K  + +V+   R GS+     V   M  D   
Sbjct: 192 CSAIGAFRLIKEIHSYAFRNLIEPHPQLK--SGLVEAYGRCGSIVYVQLVFDSME-DRDV 248

Query: 409 AMWGSLLVSSKSQGDLE--FSEFVARKLVELEPANSAY 444
             W SL+ +    GD E     F   +L ++ P + A+
Sbjct: 249 VAWSSLISAYALHGDAESALKTFQEMELAKVTPDDIAF 286


>AT2G45350.1 | Symbols: CRR4 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:18694816-18696657 REVERSE
           LENGTH=613
          Length = 613

 Score =  210 bits (534), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 112/299 (37%), Positives = 174/299 (58%), Gaps = 2/299 (0%)

Query: 192 RQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAG-VAPNRVTMVNALAACAD 250
           + LFD+M HRDVV++  M+ G+       +AL  F  M+    + P+  T+V  L A A 
Sbjct: 303 KTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQ 362

Query: 251 SGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAV 310
            G +     +H +I    + L   LG ALIDMY+KCG ++  + VF  ++ K++  WNA+
Sbjct: 363 LGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAM 422

Query: 311 IKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKY 370
           I GLA+   GE A  +  ++E+  ++ D++T + VL+AC+HSGLV  G   F  L+  K+
Sbjct: 423 IGGLAIHGLGESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFE-LMRRKH 481

Query: 371 GFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFV 430
              P ++HY CMVD+L+RSGS+  A  ++  MP +P   +W + L +     + E  E V
Sbjct: 482 KIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPVEPNDVIWRTFLTACSHHKEFETGELV 541

Query: 431 ARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
           A+ L+     N + YV LSN+YA  G W DV +VR MMK+R++ K  GCS +E++ + H
Sbjct: 542 AKHLILQAGYNPSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWIELDGRVH 600



 Score = 89.4 bits (220), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 90/376 (23%), Positives = 161/376 (42%), Gaps = 38/376 (10%)

Query: 99  FIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSV 158
           F++N++I++ SH      +L  L +      N +  + ++   + K+ S          +
Sbjct: 87  FLWNAVIKSHSHGKDPRQALLLLCLML---ENGVSVDKFSLSLVLKACSRLGFVKGGMQI 143

Query: 159 HAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGK 218
           H  + K G   D+++ N L+G+Y     L  L RQ+FD M  RD VS+  MI G+   G 
Sbjct: 144 HGFLKKTGLWSDLFLQNCLIGLYLKCGCL-GLSRQMFDRMPKRDSVSYNSMIDGYVKCGL 202

Query: 219 FDDALLAFEQM------------QYAGVAPNRVTMVNALAACADSGAVEMGAW---IHDF 263
              A   F+ M              +G A     +  A    AD    ++ +W   I  +
Sbjct: 203 IVSARELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLISWNSMIDGY 262

Query: 264 IRRNGWE-----------LDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIK 312
           ++    E            DVV    +ID YAK G V     +F  +  ++V  +N+++ 
Sbjct: 263 VKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMA 322

Query: 313 GLALAKSGEEAIRLFNRMEQDG-VRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYG 371
           G    K   EA+ +F+ ME++  +  D+ TL+ VL A    G +     +  ++VE +  
Sbjct: 323 GYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLYIVEKQ-- 380

Query: 372 FIPNVKHYACMVDLLARSGSLREA---FEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSE 428
           F    K    ++D+ ++ GS++ A   FE +     D   AM G L +     G+  F  
Sbjct: 381 FYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAI--HGLGESAFDM 438

Query: 429 FVARKLVELEPANSAY 444
            +  + + L+P +  +
Sbjct: 439 LLQIERLSLKPDDITF 454



 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 113/261 (43%), Gaps = 19/261 (7%)

Query: 154 QAQSVHAHVLKLGHLHDIYVHNSLLGVYAAS--PRLFSLCRQLFDEM--------THRDV 203
               +H  ++K G + +  +   ++  +A+S  P L    R +F E            D 
Sbjct: 27  DVNQIHGRLIKTGIIKNSNLTTRIVLAFASSRRPYLADFARCVFHEYHVCSFSFGEVEDP 86

Query: 204 VSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDF 263
             W  +I    +      ALL    M   GV+ ++ ++   L AC+  G V+ G  IH F
Sbjct: 87  FLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIHGF 146

Query: 264 IRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEA 323
           +++ G   D+ L   LI +Y KCG +    ++F  + +++  ++N++I G         A
Sbjct: 147 LKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIVSA 206

Query: 324 IRLFNRMEQDGVRADEVTLLAVLSA-CNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACM 382
             LF+ M  +    + ++  +++S     S  VD+  ++F  + E       ++  +  M
Sbjct: 207 RELFDLMPME--MKNLISWNSMISGYAQTSDGVDIASKLFADMPE------KDLISWNSM 258

Query: 383 VDLLARSGSLREAFEVMRCMP 403
           +D   + G + +A  +   MP
Sbjct: 259 IDGYVKHGRIEDAKGLFDVMP 279


>AT1G56690.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:21253817-21255931 FORWARD
           LENGTH=704
          Length = 704

 Score =  210 bits (534), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 108/302 (35%), Positives = 177/302 (58%), Gaps = 1/302 (0%)

Query: 188 FSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAA 247
            S  R++FD M  RD  +W  MI  +   G   +AL  F QMQ  GV P+  ++++ L+ 
Sbjct: 281 ISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSV 340

Query: 248 CADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTW 307
           CA   +++ G  +H  + R  ++ DV + + L+ MY KCG + +   VF     K++  W
Sbjct: 341 CATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMW 400

Query: 308 NAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVE 367
           N++I G A    GEEA+++F+ M   G   ++VTL+A+L+AC+++G ++ G +IF  + E
Sbjct: 401 NSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESM-E 459

Query: 368 GKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFS 427
            K+   P V+HY+C VD+L R+G + +A E++  M   P   +WG+LL + K+   L+ +
Sbjct: 460 SKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSRLDLA 519

Query: 428 EFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQ 487
           E  A+KL E EP N+  YV LS++ A   +W DV  VR  M+   ++K  GCS +EV ++
Sbjct: 520 EVAAKKLFENEPDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKK 579

Query: 488 GH 489
            H
Sbjct: 580 VH 581



 Score = 85.9 bits (211), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 105/216 (48%), Gaps = 12/216 (5%)

Query: 101 FNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQ---S 157
           +  +I+A+         L  L +FA M +  + P   +FP L   LS     A  Q    
Sbjct: 299 WRGMIKAYERKGFE---LEALDLFAQMQKQGVRP---SFPSLISILSVCATLASLQYGRQ 352

Query: 158 VHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAG 217
           VHAH+++     D+YV + L+ +Y     L    + +FD  + +D++ W  +I G+ + G
Sbjct: 353 VHAHLVRCQFDDDVYVASVLMTMYVKCGELVK-AKLVFDRFSSKDIIMWNSIISGYASHG 411

Query: 218 KFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVL-G 276
             ++AL  F +M  +G  PN+VT++  L AC+ +G +E G  I + +         V   
Sbjct: 412 LGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHY 471

Query: 277 TALIDMYAKCGRVEEGVRVFSSVKEK-NVFTWNAVI 311
           +  +DM  + G+V++ + +  S+  K +   W A++
Sbjct: 472 SCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALL 507



 Score = 82.8 bits (203), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 129/292 (44%), Gaps = 24/292 (8%)

Query: 135 NHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQL 194
           N  ++  +F  L       +A+ ++     +  + D+    +++G      R+    R +
Sbjct: 140 NEVSWTVMFGGLIDDGRIDKARKLY----DMMPVKDVVASTNMIGGLCREGRV-DEARLI 194

Query: 195 FDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAV 254
           FDEM  R+VV+WT MI G+R   + D A   FE M         V+  + L     SG +
Sbjct: 195 FDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMP----EKTEVSWTSMLLGYTLSGRI 250

Query: 255 EMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGL 314
           E      + +        V+   A+I  + + G + +  RVF  +++++  TW  +IK  
Sbjct: 251 EDAEEFFEVMPMK----PVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAY 306

Query: 315 ALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIP 374
                  EA+ LF +M++ GVR    +L+++LS C     +  GRQ+   LV  +  F  
Sbjct: 307 ERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQ--FDD 364

Query: 375 NVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKA----MWGSLLVSSKSQG 422
           +V   + ++ +  + G L +A  V     FD   +    MW S++    S G
Sbjct: 365 DVYVASVLMTMYVKCGELVKAKLV-----FDRFSSKDIIMWNSIISGYASHG 411



 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 107/256 (41%), Gaps = 24/256 (9%)

Query: 169 HDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQ 228
            ++   N L+  Y  + R+    R +F+ M  R+VVSWT M+ G+   G   +A   F +
Sbjct: 77  RNVVSWNGLVSGYIKN-RMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWR 135

Query: 229 MQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGR 288
           M       N V+         D G ++    ++D +       DVV  T +I    + GR
Sbjct: 136 MP----ERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVK----DVVASTNMIGGLCREGR 187

Query: 289 VEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSA 348
           V+E   +F  ++E+NV TW  +I G       + A +LF  M +      EV+  ++L  
Sbjct: 188 VDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPE----KTEVSWTSMLLG 243

Query: 349 CNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYAC--MVDLLARSGSLREAFEVMRCMPFDP 406
              SG ++   + F  +        P     AC  M+      G + +A  V   M  D 
Sbjct: 244 YTLSGRIEDAEEFFEVM--------PMKPVIACNAMIVGFGEVGEISKARRVFDLME-DR 294

Query: 407 TKAMWGSLLVSSKSQG 422
             A W  ++ + + +G
Sbjct: 295 DNATWRGMIKAYERKG 310



 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/276 (21%), Positives = 106/276 (38%), Gaps = 61/276 (22%)

Query: 192 RQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADS 251
           R+ FD +  + + SW  ++ G+ + G   +A   F++M                      
Sbjct: 37  RKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMS--------------------- 75

Query: 252 GAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVI 311
                             E +VV    L+  Y K   + E   VF  + E+NV +W A++
Sbjct: 76  ------------------ERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMV 117

Query: 312 KGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYG 371
           KG        EA  LF RM +     +EV+   +       G +D  R+++  +      
Sbjct: 118 KGYMQEGMVGEAESLFWRMPE----RNEVSWTVMFGGLIDDGRIDKARKLYDMMP----- 168

Query: 372 FIPNVKHYACMVDLLARSGSLREA---FEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSE 428
            + +V     M+  L R G + EA   F+ MR    +     W +++   +    ++   
Sbjct: 169 -VKDVVASTNMIGGLCREGRVDEARLIFDEMR----ERNVVTWTTMITGYRQNNRVD--- 220

Query: 429 FVARKLVELEPANSAY-YVHLSNLYAEMGRWDDVEK 463
            VARKL E+ P  +   +  +   Y   GR +D E+
Sbjct: 221 -VARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEE 255


>AT3G25970.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:9500116-9502221 REVERSE
           LENGTH=701
          Length = 701

 Score =  209 bits (532), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 130/455 (28%), Positives = 232/455 (50%), Gaps = 11/455 (2%)

Query: 37  VTLLKD--FCHSRLHVQQIQAQLILHNLQSNPTIAHHFITVCQSHXXXXXXXXXXXXXVP 94
           +TLL D  FC+    ++Q+ A+++   LQ   TI +  I+                    
Sbjct: 210 LTLLDDPMFCN---LLKQVHAKVLKLGLQHEITICNAMISSYADCGSVSDAKRVFDGLGG 266

Query: 95  RPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQ 154
              +  +NS+I  FS    H    +   +F  M R+ +  + YT+  L  + S   H   
Sbjct: 267 SKDLISWNSMIAGFSK---HELKESAFELFIQMQRHWVETDIYTYTGLLSACSGEEHQIF 323

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPR-LFSLCRQLFDEMTHRDVVSWTVMIMGF 213
            +S+H  V+K G        N+L+ +Y   P         LF+ +  +D++SW  +I GF
Sbjct: 324 GKSLHGMVIKKGLEQVTSATNALISMYIQFPTGTMEDALSLFESLKSKDLISWNSIITGF 383

Query: 214 RNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDV 273
              G  +DA+  F  ++ + +  +       L +C+D   +++G  IH    ++G+  + 
Sbjct: 384 AQKGLSEDAVKFFSYLRSSEIKVDDYAFSALLRSCSDLATLQLGQQIHALATKSGFVSNE 443

Query: 274 VLGTALIDMYAKCGRVEEGVRVFSSVKEK-NVFTWNAVIKGLALAKSGEEAIRLFNRMEQ 332
            + ++LI MY+KCG +E   + F  +  K +   WNA+I G A    G+ ++ LF++M  
Sbjct: 444 FVISSLIVMYSKCGIIESARKCFQQISSKHSTVAWNAMILGYAQHGLGQVSLDLFSQMCN 503

Query: 333 DGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSL 392
             V+ D VT  A+L+AC+H+GL+  G ++   L+E  Y   P ++HYA  VDLL R+G +
Sbjct: 504 QNVKLDHVTFTAILTACSHTGLIQEGLELLN-LMEPVYKIQPRMEHYAAAVDLLGRAGLV 562

Query: 393 REAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLY 452
            +A E++  MP +P   +  + L   ++ G++E +  VA  L+E+EP +   YV LS++Y
Sbjct: 563 NKAKELIESMPLNPDPMVLKTFLGVCRACGEIEMATQVANHLLEIEPEDHFTYVSLSHMY 622

Query: 453 AEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQ 487
           +++ +W++   V+ MMK+R + K  G S +E+  Q
Sbjct: 623 SDLKKWEEKASVKKMMKERGVKKVPGWSWIEIRNQ 657



 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 131/279 (46%), Gaps = 5/279 (1%)

Query: 152 FAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIM 211
           F +    H + +K G + DIYV N +L  Y     L      LFDEM  RD VSW  MI 
Sbjct: 16  FQKLSLTHCYAIKCGSISDIYVSNRILDSYIKFGFL-GYANMLFDEMPKRDSVSWNTMIS 74

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
           G+ + GK +DA   F  M+ +G   +  +    L   A     ++G  +H  + + G+E 
Sbjct: 75  GYTSCGKLEDAWCLFTCMKRSGSDVDGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGYEC 134

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRME 331
           +V +G++L+DMYAKC RVE+    F  + E N  +WNA+I G    +  + A  L   ME
Sbjct: 135 NVYVGSSLVDMYAKCERVEDAFEAFKEISEPNSVSWNALIAGFVQVRDIKTAFWLLGLME 194

Query: 332 -QDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSG 390
            +  V  D  T   +L+  +     ++ +Q+   ++  K G    +     M+   A  G
Sbjct: 195 MKAAVTMDAGTFAPLLTLLDDPMFCNLLKQVHAKVL--KLGLQHEITICNAMISSYADCG 252

Query: 391 SLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEF 429
           S+ +A  V   +        W S +++  S+ +L+ S F
Sbjct: 253 SVSDAKRVFDGLGGSKDLISWNS-MIAGFSKHELKESAF 290



 Score = 99.0 bits (245), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 132/278 (47%), Gaps = 8/278 (2%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P+     +N++I  ++      ++     +F  M R+    + Y+F  L K +++   F
Sbjct: 61  MPKRDSVSWNTMISGYTSCGKLEDAWC---LFTCMKRSGSDVDGYSFSRLLKGIASVKRF 117

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMG 212
              + VH  V+K G+  ++YV +SL+ +YA   R+     + F E++  + VSW  +I G
Sbjct: 118 DLGEQVHGLVIKGGYECNVYVGSSLVDMYAKCERVED-AFEAFKEISEPNSVSWNALIAG 176

Query: 213 FRNAGKFDDA--LLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWE 270
           F        A  LL   +M+ A V  +  T    L    D     +   +H  + + G +
Sbjct: 177 FVQVRDIKTAFWLLGLMEMK-AAVTMDAGTFAPLLTLLDDPMFCNLLKQVHAKVLKLGLQ 235

Query: 271 LDVVLGTALIDMYAKCGRVEEGVRVFSSV-KEKNVFTWNAVIKGLALAKSGEEAIRLFNR 329
            ++ +  A+I  YA CG V +  RVF  +   K++ +WN++I G +  +  E A  LF +
Sbjct: 236 HEITICNAMISSYADCGSVSDAKRVFDGLGGSKDLISWNSMIAGFSKHELKESAFELFIQ 295

Query: 330 MEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVE 367
           M++  V  D  T   +LSAC+       G+ + G +++
Sbjct: 296 MQRHWVETDIYTYTGLLSACSGEEHQIFGKSLHGMVIK 333


>AT4G35130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:16721084-16723498 REVERSE
           LENGTH=804
          Length = 804

 Score =  209 bits (532), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 104/336 (30%), Positives = 199/336 (59%), Gaps = 2/336 (0%)

Query: 154 QAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGF 213
           + +++H + ++ G L  + +  +L+ +Y    +L S    +FD M  ++V+SW  +I  +
Sbjct: 348 EGRTIHGYAMRRGFLPHMVLETALIDMYGECGQLKS-AEVIFDRMAEKNVISWNSIIAAY 406

Query: 214 RNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDV 273
              GK   AL  F+++  + + P+  T+ + L A A+S ++  G  IH +I ++ +  + 
Sbjct: 407 VQNGKNYSALELFQELWDSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSRYWSNT 466

Query: 274 VLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQD 333
           ++  +L+ MYA CG +E+  + F+ +  K+V +WN++I   A+   G  ++ LF+ M   
Sbjct: 467 IILNSLVHMYAMCGDLEDARKCFNHILLKDVVSWNSIIMAYAVHGFGRISVWLFSEMIAS 526

Query: 334 GVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLR 393
            V  ++ T  ++L+AC+ SG+VD G + F  + + +YG  P ++HY CM+DL+ R+G+  
Sbjct: 527 RVNPNKSTFASLLAACSISGMVDEGWEYFESM-KREYGIDPGIEHYGCMLDLIGRTGNFS 585

Query: 394 EAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYA 453
            A   +  MPF PT  +WGSLL +S++  D+  +EF A ++ ++E  N+  YV L N+YA
Sbjct: 586 AAKRFLEEMPFVPTARIWGSLLNASRNHKDITIAEFAAEQIFKMEHDNTGCYVLLLNMYA 645

Query: 454 EMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
           E GRW+DV +++ +M+ + +++    S+VE + + H
Sbjct: 646 EAGRWEDVNRIKLLMESKGISRTSSRSTVEAKGKSH 681



 Score =  150 bits (380), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 177/330 (53%), Gaps = 13/330 (3%)

Query: 95  RPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQ 154
           +   F++N +I+ F+    +   +  +  ++ M    +  + +T+PF+ KS++      +
Sbjct: 92  KADAFLWNVMIKGFTSCGLY---IEAVQFYSRMVFAGVKADTFTYPFVIKSVAGISSLEE 148

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFR 214
            + +HA V+KLG + D+YV NSL+ +Y      +    ++F+EM  RD+VSW  MI G+ 
Sbjct: 149 GKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWD-AEKVFEEMPERDIVSWNSMISGYL 207

Query: 215 NAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL-DV 273
             G    +L+ F++M   G  P+R + ++AL AC+   + +MG  IH    R+  E  DV
Sbjct: 208 ALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAVRSRIETGDV 267

Query: 274 VLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRM-EQ 332
           ++ T+++DMY+K G V    R+F+ + ++N+  WN +I   A      +A   F +M EQ
Sbjct: 268 MVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQKMSEQ 327

Query: 333 DGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSL 392
           +G++ D +T + +L A   S +++ GR I G+ +  + GF+P++     ++D+    G L
Sbjct: 328 NGLQPDVITSINLLPA---SAILE-GRTIHGYAM--RRGFLPHMVLETALIDMYGECGQL 381

Query: 393 REAFEVMRCMPFDPTKAMWGSLLVSSKSQG 422
           + A EV+     +     W S++ +    G
Sbjct: 382 KSA-EVIFDRMAEKNVISWNSIIAAYVQNG 410



 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 146/305 (47%), Gaps = 12/305 (3%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P   +  +NS+I  +       +  + L +F  M +    P+ ++      + S     
Sbjct: 191 MPERDIVSWNSMISGY---LALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSP 247

Query: 153 AQAQSVHAHVLKLG-HLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIM 211
              + +H H ++      D+ V  S+L +Y+    + S   ++F+ M  R++V+W VMI 
Sbjct: 248 KMGKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEV-SYAERIFNGMIQRNIVAWNVMIG 306

Query: 212 GFRNAGKFDDALLAFEQM-QYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWE 270
            +   G+  DA L F++M +  G+ P+ +T +N L A     A+  G  IH +  R G+ 
Sbjct: 307 CYARNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPA----SAILEGRTIHGYAMRRGFL 362

Query: 271 LDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRM 330
             +VL TALIDMY +CG+++    +F  + EKNV +WN++I           A+ LF  +
Sbjct: 363 PHMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSALELFQEL 422

Query: 331 EQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSG 390
               +  D  T+ ++L A   S  +  GR+I  ++V+ +Y    N      +V + A  G
Sbjct: 423 WDSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSRYW--SNTIILNSLVHMYAMCG 480

Query: 391 SLREA 395
            L +A
Sbjct: 481 DLEDA 485



 Score =  102 bits (254), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 93/179 (51%)

Query: 183 ASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMV 242
           A  RL     QLFDEM   D   W VMI GF + G + +A+  + +M +AGV  +  T  
Sbjct: 75  ADSRLMEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTYP 134

Query: 243 NALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEK 302
             + + A   ++E G  IH  + + G+  DV +  +LI +Y K G   +  +VF  + E+
Sbjct: 135 FVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPER 194

Query: 303 NVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQI 361
           ++ +WN++I G      G  ++ LF  M + G + D  + ++ L AC+H     MG++I
Sbjct: 195 DIVSWNSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEI 253



 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 69/137 (50%), Gaps = 7/137 (5%)

Query: 289 VEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSA 348
           +E+ +++F  + + + F WN +IKG        EA++ ++RM   GV+AD  T   V+ +
Sbjct: 80  MEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTYPFVIKS 139

Query: 349 CNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYAC--MVDLLARSGSLREAFEVMRCMPFDP 406
                 ++ G++I   ++  K GF+ +V  Y C  ++ L  + G   +A +V   MP + 
Sbjct: 140 VAGISSLEEGKKIHAMVI--KLGFVSDV--YVCNSLISLYMKLGCAWDAEKVFEEMP-ER 194

Query: 407 TKAMWGSLLVSSKSQGD 423
               W S++    + GD
Sbjct: 195 DIVSWNSMISGYLALGD 211


>AT4G25270.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:12937253-12938836 REVERSE
           LENGTH=527
          Length = 527

 Score =  208 bits (530), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 113/376 (30%), Positives = 212/376 (56%), Gaps = 12/376 (3%)

Query: 99  FIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSV 158
           F +NSLI  ++    + +++   +++  M  + + P+ +TFP + K+          +++
Sbjct: 161 FAWNSLISGYAELGQYEDAM---ALYFQMAEDGVKPDRFTFPRVLKACGGIGSVQIGEAI 217

Query: 159 HAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGK 218
           H  ++K G  +D+YV N+L+ +YA    +    R +FD + H+D VSW  M+ G+ + G 
Sbjct: 218 HRDLVKEGFGYDVYVLNALVVMYAKCGDIVK-ARNVFDMIPHKDYVSWNSMLTGYLHHGL 276

Query: 219 FDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTA 278
             +AL  F  M   G+ P++V + + LA      + + G  +H ++ R G E ++ +  A
Sbjct: 277 LHEALDIFRLMVQNGIEPDKVAISSVLARVL---SFKHGRQLHGWVIRRGMEWELSVANA 333

Query: 279 LIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRAD 338
           LI +Y+K G++ +   +F  + E++  +WNA+I   +   +G   ++ F +M +   + D
Sbjct: 334 LIVLYSKRGQLGQACFIFDQMLERDTVSWNAIISAHSKNSNG---LKYFEQMHRANAKPD 390

Query: 339 EVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFE- 397
            +T ++VLS C ++G+V+ G ++F  L+  +YG  P ++HYACMV+L  R+G + EA+  
Sbjct: 391 GITFVSVLSLCANTGMVEDGERLFS-LMSKEYGIDPKMEHYACMVNLYGRAGMMEEAYSM 449

Query: 398 VMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGR 457
           +++ M  +    +WG+LL +    G+ +  E  A++L ELEP N   +  L  +Y++  R
Sbjct: 450 IVQEMGLEAGPTVWGALLYACYLHGNTDIGEVAAQRLFELEPDNEHNFELLIRIYSKAKR 509

Query: 458 WDDVEKVRGMMKDRQL 473
            +DVE+VR MM DR L
Sbjct: 510 AEDVERVRQMMVDRGL 525



 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/344 (27%), Positives = 171/344 (49%), Gaps = 29/344 (8%)

Query: 138 TFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLC------ 191
           T P +F SL   C+  +A     H +++ HL   Y+  + LG+ +   RL++ C      
Sbjct: 90  TEPEIFASLLETCYSLRAID---HGVRVHHLIPPYLLRNNLGISSKLVRLYASCGYAEVA 146

Query: 192 RQLFDEMTHRDV--VSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACA 249
            ++FD M+ RD    +W  +I G+   G+++DA+  + QM   GV P+R T    L AC 
Sbjct: 147 HEVFDRMSKRDSSPFAWNSLISGYAELGQYEDAMALYFQMAEDGVKPDRFTFPRVLKACG 206

Query: 250 DSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNA 309
             G+V++G  IH  + + G+  DV +  AL+ MYAKCG + +   VF  +  K+  +WN+
Sbjct: 207 GIGSVQIGEAIHRDLVKEGFGYDVYVLNALVVMYAKCGDIVKARNVFDMIPHKDYVSWNS 266

Query: 310 VIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGK 369
           ++ G        EA+ +F  M Q+G+  D+V + +VL+          GRQ+ G+++  +
Sbjct: 267 MLTGYLHHGLLHEALDIFRLMVQNGIEPDKVAISSVLARVLS---FKHGRQLHGWVI--R 321

Query: 370 YGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDP----TKAMWGSLLVS-SKSQGDL 424
            G    +     ++ L ++ G L +A     C  FD         W +++ + SK+   L
Sbjct: 322 RGMEWELSVANALIVLYSKRGQLGQA-----CFIFDQMLERDTVSWNAIISAHSKNSNGL 376

Query: 425 EFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMM 468
           ++ E + R     +P +   +V + +L A  G  +D E++  +M
Sbjct: 377 KYFEQMHR--ANAKP-DGITFVSVLSLCANTGMVEDGERLFSLM 417


>AT4G16470.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:9287862-9289541 REVERSE
           LENGTH=501
          Length = 501

 Score =  208 bits (530), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 113/352 (32%), Positives = 185/352 (52%), Gaps = 2/352 (0%)

Query: 138 TFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDE 197
           T+  L +       + + + +HA +  +G   + Y+   LL +YA S  L      LF  
Sbjct: 110 TYAVLLQECKQRKEYTKGKRIHAQMFVVGFALNEYLKVKLLILYALSGDL-QTAGILFRS 168

Query: 198 MTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMG 257
           +  RD++ W  MI G+   G   + L  +  M+   + P++ T  +   AC+    +E G
Sbjct: 169 LKIRDLIPWNAMISGYVQKGLEQEGLFIYYDMRQNRIVPDQYTFASVFRACSALDRLEHG 228

Query: 258 AWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALA 317
              H  + +   + ++++ +AL+DMY KC    +G RVF  +  +NV TW ++I G    
Sbjct: 229 KRAHAVMIKRCIKSNIIVDSALVDMYFKCSSFSDGHRVFDQLSTRNVITWTSLISGYGYH 288

Query: 318 KSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVK 377
               E ++ F +M+++G R + VT L VL+ACNH GLVD G + F + ++  YG  P  +
Sbjct: 289 GKVSEVLKCFEKMKEEGCRPNPVTFLVVLTACNHGGLVDKGWEHF-YSMKRDYGIEPEGQ 347

Query: 378 HYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVEL 437
           HYA MVD L R+G L+EA+E +   P      +WGSLL + +  G+++  E  A K +EL
Sbjct: 348 HYAAMVDTLGRAGRLQEAYEFVMKSPCKEHPPVWGSLLGACRIHGNVKLLELAATKFLEL 407

Query: 438 EPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
           +P N   YV  +N YA  G  +   KVR  M++  + KD G S +E++ + H
Sbjct: 408 DPTNGGNYVVFANGYASCGLREAASKVRRKMENAGVKKDPGYSQIELQGEVH 459



 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 96/173 (55%), Gaps = 4/173 (2%)

Query: 121 LSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGV 180
           L I+  M +N I+P+ YTF  +F++ SA       +  HA ++K     +I V ++L+ +
Sbjct: 194 LFIYYDMRQNRIVPDQYTFASVFRACSALDRLEHGKRAHAVMIKRCIKSNIIVDSALVDM 253

Query: 181 YAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVT 240
           Y      FS   ++FD+++ R+V++WT +I G+   GK  + L  FE+M+  G  PN VT
Sbjct: 254 YFKCSS-FSDGHRVFDQLSTRNVITWTSLISGYGYHGKVSEVLKCFEKMKEEGCRPNPVT 312

Query: 241 MVNALAACADSGAVEMGAWIHDF-IRRN-GWELDVVLGTALIDMYAKCGRVEE 291
            +  L AC   G V+ G W H + ++R+ G E +     A++D   + GR++E
Sbjct: 313 FLVVLTACNHGGLVDKG-WEHFYSMKRDYGIEPEGQHYAAMVDTLGRAGRLQE 364


>AT1G53600.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:20001263-20003416 FORWARD
           LENGTH=717
          Length = 717

 Score =  206 bits (525), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 108/302 (35%), Positives = 174/302 (57%), Gaps = 1/302 (0%)

Query: 189 SLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAAC 248
           S C +LF  M  +D ++WT MI  F + G +++AL  F +M    V PN  T  + L+A 
Sbjct: 389 SKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSAT 448

Query: 249 ADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWN 308
           A    +  G  IH  + +     D+ +  +L+ MY KCG   +  ++FS + E N+ ++N
Sbjct: 449 ASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSYN 508

Query: 309 AVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEG 368
            +I G +    G++A++LF+ +E  G   + VT LA+LSAC H G VD+G + F  + + 
Sbjct: 509 TMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVHVGYVDLGWKYFKSM-KS 567

Query: 369 KYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSE 428
            Y   P   HYACMVDLL RSG L +A  ++  MP  P   +WGSLL +SK+   ++ +E
Sbjct: 568 SYNIEPGPDHYACMVDLLGRSGLLDDASNLISTMPCKPHSGVWGSLLSASKTHLRVDLAE 627

Query: 429 FVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQG 488
             A+KL+ELEP ++  YV LS LY+ +G+  D +++  + K +++ KD G S + ++ + 
Sbjct: 628 LAAKKLIELEPDSATPYVVLSQLYSIIGKNRDCDRIMNIKKSKRIKKDPGSSWIILKGEV 687

Query: 489 HT 490
           H 
Sbjct: 688 HN 689



 Score =  108 bits (269), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 129/278 (46%), Gaps = 15/278 (5%)

Query: 192 RQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAG-VAPNRVTMVNALAACAD 250
           R LFD MT R+V++WT MI G+  AG F+D    F +M+  G V  N  T+     AC D
Sbjct: 228 RSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRD 287

Query: 251 SGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAV 310
                 G+ IH  + R   E D+ LG +L+ MY+K G + E   VF  +K K+  +WN++
Sbjct: 288 FVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSL 347

Query: 311 IKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKY 370
           I GL   K   EA  LF +M       D V+   ++   +  G +    ++FG + E   
Sbjct: 348 ITGLVQRKQISEAYELFEKMPGK----DMVSWTDMIKGFSGKGEISKCVELFGMMPEKD- 402

Query: 371 GFIPNVKHYACMVDLLARSGSLREA---FEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFS 427
               N+  +  M+     +G   EA   F  M      P    + S+L ++ S  DL   
Sbjct: 403 ----NIT-WTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEG 457

Query: 428 EFVARKLVELEPANS-AYYVHLSNLYAEMGRWDDVEKV 464
             +  ++V++   N  +    L ++Y + G  +D  K+
Sbjct: 458 LQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKI 495



 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 81/165 (49%), Gaps = 4/165 (2%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P      + ++I AF  + ++  +L     F  M +  + PN YTF  +  + ++    
Sbjct: 398 MPEKDNITWTAMISAFVSNGYYEEALC---WFHKMLQKEVCPNSYTFSSVLSATASLADL 454

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMG 212
            +   +H  V+K+  ++D+ V NSL+ +Y       +   ++F  ++  ++VS+  MI G
Sbjct: 455 IEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNT-NDAYKIFSCISEPNIVSYNTMISG 513

Query: 213 FRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMG 257
           +   G    AL  F  ++ +G  PN VT +  L+AC   G V++G
Sbjct: 514 YSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVHVGYVDLG 558



 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 85/177 (48%), Gaps = 13/177 (7%)

Query: 193 QLFDEMTHRDVVSWTVMIMGFRNAGKFDDA--LLAFEQMQYAGVAPNRVTMVNALAACAD 250
           +LF ++  ++ VS+  MI GF  AG+FD+A  L A   +++     + V +         
Sbjct: 134 ELFCDIPEKNAVSYATMITGFVRAGRFDEAEFLYAETPVKFRDSVASNVLL--------- 184

Query: 251 SGAVEMGAWIHDFIRRNGWEL-DVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNA 309
           SG +  G W        G  + +VV  ++++  Y K GR+ +   +F  + E+NV TW A
Sbjct: 185 SGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDARSLFDRMTERNVITWTA 244

Query: 310 VIKGLALAKSGEEAIRLFNRMEQDG-VRADEVTLLAVLSACNHSGLVDMGRQIFGFL 365
           +I G   A   E+   LF RM Q+G V+ +  TL  +  AC        G QI G +
Sbjct: 245 MIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDFVRYREGSQIHGLV 301


>AT5G13270.1 | Symbols: RARE1 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:4246954-4249212 REVERSE
           LENGTH=752
          Length = 752

 Score =  205 bits (521), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 115/376 (30%), Positives = 197/376 (52%), Gaps = 15/376 (3%)

Query: 121 LSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGV 180
           L +F  +    +  + + F  + K+ ++       + +HA V KLG   ++ V   L+  
Sbjct: 270 LKLFVDLVTEGVEWDSFVFSVVLKACASLEELNLGKQIHACVAKLGLESEVSVGTPLVDF 329

Query: 181 YAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAP-NRV 239
           Y       S CR  F E+   + VSW+ +I G+    +F++A+  F+ ++    +  N  
Sbjct: 330 YIKCSSFESACRA-FQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNASILNSF 388

Query: 240 TMVNALAACADSGAVEMGAWIH-DFIRRNGWELDVVLGT-----ALIDMYAKCGRVEEGV 293
           T  +   AC+      +G  +H D I+R+      ++G+     ALI MY+KCG +++  
Sbjct: 389 TYTSIFQACSVLADCNIGGQVHADAIKRS------LIGSQYGESALITMYSKCGCLDDAN 442

Query: 294 RVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSG 353
            VF S+   ++  W A I G A   +  EA+RLF +M   G++ + VT +AVL+AC+H+G
Sbjct: 443 EVFESMDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACSHAG 502

Query: 354 LVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGS 413
           LV+ G+     ++  KY   P + HY CM+D+ ARSG L EA + M+ MPF+P    W  
Sbjct: 503 LVEQGKHCLDTMLR-KYNVAPTIDHYDCMIDIYARSGLLDEALKFMKNMPFEPDAMSWKC 561

Query: 414 LLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQL 473
            L    +  +LE  E    +L +L+P ++A YV   NLY   G+W++  ++  +M +R L
Sbjct: 562 FLSGCWTHKNLELGEIAGEELRQLDPEDTAGYVLPFNLYTWAGKWEEAAEMMKLMNERML 621

Query: 474 TKDLGCSSVEVEEQGH 489
            K+L CS ++ + + H
Sbjct: 622 KKELSCSWIQEKGKIH 637



 Score =  115 bits (288), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 137/296 (46%), Gaps = 5/296 (1%)

Query: 121 LSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGV 180
           + +F+ M  +   P    +  L KSL  P      + +HAHV++ G   +  +   ++ +
Sbjct: 169 VGLFSGMLASGDKPPSSMYTTLLKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNM 228

Query: 181 YAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVT 240
           Y     L    +++FD+M  +  V+ T +++G+  AG+  DAL  F  +   GV  +   
Sbjct: 229 YVKCGWLVG-AKRVFDQMAVKKPVACTGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFV 287

Query: 241 MVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVK 300
               L ACA    + +G  IH  + + G E +V +GT L+D Y KC   E   R F  ++
Sbjct: 288 FSVVLKACASLEELNLGKQIHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRAFQEIR 347

Query: 301 EKNVFTWNAVIKGLALAKSGEEAIRLFNRME-QDGVRADEVTLLAVLSACNHSGLVDMGR 359
           E N  +W+A+I G       EEA++ F  +  ++    +  T  ++  AC+     ++G 
Sbjct: 348 EPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNASILNSFTYTSIFQACSVLADCNIGG 407

Query: 360 QIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLL 415
           Q+    +  K   I +    + ++ + ++ G L +A EV   M  +P    W + +
Sbjct: 408 QVHADAI--KRSLIGSQYGESALITMYSKCGCLDDANEVFESMD-NPDIVAWTAFI 460



 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 122/293 (41%), Gaps = 10/293 (3%)

Query: 126 HMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASP 185
            M +  +  + Y++  LF++       +  + +H  +        + + N +L +Y    
Sbjct: 73  EMDKAGVSVSSYSYQCLFEACRELRSLSHGRLLHDRMRMGIENPSVLLQNCVLQMYCEC- 131

Query: 186 RLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNAL 245
           R      +LFDEM+  + VS T MI  +   G  D A+  F  M  +G  P        L
Sbjct: 132 RSLEDADKLFDEMSELNAVSRTTMISAYAEQGILDKAVGLFSGMLASGDKPPSSMYTTLL 191

Query: 246 AACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVF 305
            +  +  A++ G  IH  + R G   +  + T +++MY KCG +    RVF  +  K   
Sbjct: 192 KSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCGWLVGAKRVFDQMAVKKPV 251

Query: 306 TWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFL 365
               ++ G   A    +A++LF  +  +GV  D      VL AC     +++G+QI   +
Sbjct: 252 ACTGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKACASLEELNLGKQIHACV 311

Query: 366 VEGKYGFIPNVKHYACMVDLLARSGSLR---EAFEVMRCMPFDPTKAMWGSLL 415
              K G    V     +VD   +  S      AF+ +R    +P    W +++
Sbjct: 312 --AKLGLESEVSVGTPLVDFYIKCSSFESACRAFQEIR----EPNDVSWSAII 358



 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 87/205 (42%), Gaps = 3/205 (1%)

Query: 218 KFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGT 277
           K ++A    ++M  AGV+ +  +      AC +  ++  G  +HD +R       V+L  
Sbjct: 63  KLNEAFEFLQEMDKAGVSVSSYSYQCLFEACRELRSLSHGRLLHDRMRMGIENPSVLLQN 122

Query: 278 ALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRA 337
            ++ MY +C  +E+  ++F  + E N  +   +I   A     ++A+ LF+ M   G + 
Sbjct: 123 CVLQMYCECRSLEDADKLFDEMSELNAVSRTTMISAYAEQGILDKAVGLFSGMLASGDKP 182

Query: 338 DEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFE 397
                  +L +  +   +D GRQI   ++  + G   N      +V++  + G L  A  
Sbjct: 183 PSSMYTTLLKSLVNPRALDFGRQIHAHVI--RAGLCSNTSIETGIVNMYVKCGWLVGAKR 240

Query: 398 VMRCMPFDPTKAMWGSLLVSSKSQG 422
           V   M      A  G L+V     G
Sbjct: 241 VFDQMAVKKPVACTG-LMVGYTQAG 264


>AT5G42450.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:16977297-16978850 FORWARD
           LENGTH=517
          Length = 517

 Score =  205 bits (521), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 126/394 (31%), Positives = 201/394 (51%), Gaps = 40/394 (10%)

Query: 132 ILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAA-------- 183
           I PN +TF  +  S +        + +H + LK+G   +++V +++L  Y          
Sbjct: 89  IRPNEFTFGTVIGSSTTSRDVKLGKQLHCYALKMGLASNVFVGSAVLNCYVKLSTLTDAR 148

Query: 184 -------SPRLFSLCR---------------QLFDEMTHRDVVSWTVMIMGFRNAGKFDD 221
                   P + S+                  LF  M  R VV+W  +I GF   G+ ++
Sbjct: 149 RCFDDTRDPNVVSITNLISGYLKKHEFEEALSLFRAMPERSVVTWNAVIGGFSQTGRNEE 208

Query: 222 ALLAFEQMQYAGVA-PNRVTMVNALAACADSGAVEMGAWIHD-FIRRNGWELDVVLGTAL 279
           A+  F  M   GV  PN  T   A+ A ++  +   G  IH   I+  G   +V +  +L
Sbjct: 209 AVNTFVDMLREGVVIPNESTFPCAITAISNIASHGAGKSIHACAIKFLGKRFNVFVWNSL 268

Query: 280 IDMYAKCGRVEEGVRVFSSVKE--KNVFTWNAVIKGLALAKSGEEAIRLFNRMEQD-GVR 336
           I  Y+KCG +E+ +  F+ ++E  +N+ +WN++I G A    GEEA+ +F +M +D  +R
Sbjct: 269 ISFYSKCGNMEDSLLAFNKLEEEQRNIVSWNSMIWGYAHNGRGEEAVAMFEKMVKDTNLR 328

Query: 337 ADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNV---KHYACMVDLLARSGSLR 393
            + VT+L VL ACNH+GL+  G   F   V       PN+   +HYACMVD+L+RSG  +
Sbjct: 329 PNNVTILGVLFACNHAGLIQEGYMYFNKAVNDYDD--PNLLELEHYACMVDMLSRSGRFK 386

Query: 394 EAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYA 453
           EA E+++ MP DP    W +LL   +   +   ++  A K++EL+P + + YV LSN Y+
Sbjct: 387 EAEELIKSMPLDPGIGFWKALLGGCQIHSNKRLAKLAASKILELDPRDVSSYVMLSNAYS 446

Query: 454 EMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQ 487
            M  W +V  +R  MK+  L +  GCS +EV +Q
Sbjct: 447 AMENWQNVSLIRRKMKETGLKRFTGCSWIEVRDQ 480



 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 116/238 (48%), Gaps = 29/238 (12%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRN-TILPNHYTFPFLFKSLSAPCH 151
           +P   V  +N++I  FS +  +  ++   + F  M R   ++PN  TFP    ++S    
Sbjct: 185 MPERSVVTWNAVIGGFSQTGRNEEAV---NTFVDMLREGVVIPNESTFPCAITAISNIAS 241

Query: 152 FAQAQSVHAHVLK-LGHLHDIYVHNSLLGVYAASPRLFSLCRQLFD--------EMTHRD 202
               +S+HA  +K LG   +++V NSL+  Y       S C  + D        E   R+
Sbjct: 242 HGAGKSIHACAIKFLGKRFNVFVWNSLISFY-------SKCGNMEDSLLAFNKLEEEQRN 294

Query: 203 VVSWTVMIMGFRNAGKFDDALLAFEQM-QYAGVAPNRVTMVNALAACADSGAVEMG---- 257
           +VSW  MI G+ + G+ ++A+  FE+M +   + PN VT++  L AC  +G ++ G    
Sbjct: 295 IVSWNSMIWGYAHNGRGEEAVAMFEKMVKDTNLRPNNVTILGVLFACNHAGLIQEGYMYF 354

Query: 258 -AWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVK-EKNVFTWNAVIKG 313
              ++D+   N  EL+      ++DM ++ GR +E   +  S+  +  +  W A++ G
Sbjct: 355 NKAVNDYDDPNLLELEHY--ACMVDMLSRSGRFKEAEELIKSMPLDPGIGFWKALLGG 410



 Score = 79.3 bits (194), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 127/287 (44%), Gaps = 13/287 (4%)

Query: 193 QLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSG 252
           ++FDE+   DV+S T +I  F    +  +A  AF+++   G+ PN  T    + +   S 
Sbjct: 48  KVFDEIPELDVISATAVIGRFVKESRHVEASQAFKRLLCLGIRPNEFTFGTVIGSSTTSR 107

Query: 253 AVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIK 312
            V++G  +H +  + G   +V +G+A+++ Y K   + +  R F   ++ NV +   +I 
Sbjct: 108 DVKLGKQLHCYALKMGLASNVFVGSAVLNCYVKLSTLTDARRCFDDTRDPNVVSITNLIS 167

Query: 313 GLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIF-GFLVEGKYG 371
           G       EEA+ LF  M +  V    VT  AV+   + +G  +     F   L EG   
Sbjct: 168 GYLKKHEFEEALSLFRAMPERSV----VTWNAVIGGFSQTGRNEEAVNTFVDMLREGV-- 221

Query: 372 FIPNVKHYACMVDLLARSGSLREAFEVMRC-MPFDPTK---AMWGSLLVSSKSQGDLEFS 427
            IPN   + C +  ++   S      +  C + F   +    +W SL+      G++E S
Sbjct: 222 VIPNESTFPCAITAISNIASHGAGKSIHACAIKFLGKRFNVFVWNSLISFYSKCGNMEDS 281

Query: 428 EFVARKLVELEPANSAYYVHLSNLYAEMGRWDD-VEKVRGMMKDRQL 473
                KL E E  N   +  +   YA  GR ++ V     M+KD  L
Sbjct: 282 LLAFNKLEE-EQRNIVSWNSMIWGYAHNGRGEEAVAMFEKMVKDTNL 327


>AT1G16480.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:5625843-5628656 REVERSE
           LENGTH=937
          Length = 937

 Score =  204 bits (520), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 119/396 (30%), Positives = 204/396 (51%), Gaps = 6/396 (1%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +PR  V  +N+LI  ++       +L     F  M    +  N+ T   +  +   P   
Sbjct: 423 MPRRDVVAWNALIGGYAEDEDPDKALAA---FQTMRVEGVSSNYITVVSVLSACLLPGDL 479

Query: 153 AQ-AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIM 211
            +  + +HA+++  G   D +V NSL+ +YA    L S  + LF+ + +R++++W  M+ 
Sbjct: 480 LERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSS-SQDLFNGLDNRNIITWNAMLA 538

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
              + G  ++ L    +M+  GV+ ++ +    L+A A    +E G  +H    + G+E 
Sbjct: 539 ANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEH 598

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRME 331
           D  +  A  DMY+KCG + E V++      +++ +WN +I  L      EE    F+ M 
Sbjct: 599 DSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEML 658

Query: 332 QDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGS 391
           + G++   VT +++L+AC+H GLVD G   +  +    +G  P ++H  C++DLL RSG 
Sbjct: 659 EMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIAR-DFGLEPAIEHCICVIDLLGRSGR 717

Query: 392 LREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNL 451
           L EA   +  MP  P   +W SLL S K  G+L+     A  L +LEP + + YV  SN+
Sbjct: 718 LAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNM 777

Query: 452 YAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQ 487
           +A  GRW+DVE VR  M  + + K   CS V+++++
Sbjct: 778 FATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDK 813



 Score =  132 bits (333), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 101/385 (26%), Positives = 179/385 (46%), Gaps = 13/385 (3%)

Query: 39  LLKDFCHSRLHVQQIQAQLILHNLQSNPTIAHHFITVCQSHXXXXXXXXXXXXXVPRPHV 98
           LLKD    R    QI  Q++   L+S   + +  I++  S                R  +
Sbjct: 172 LLKDESLGR----QIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTI 227

Query: 99  FIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSV 158
             +NS+  A++ + H   S    S+    H      N  T   L   L    H    + +
Sbjct: 228 S-WNSIAAAYAQNGHIEESFRIFSLMRRFHDEV---NSTTVSTLLSVLGHVDHQKWGRGI 283

Query: 159 HAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGK 218
           H  V+K+G    + V N+LL +YA + R       +F +M  +D++SW  ++  F N G+
Sbjct: 284 HGLVVKMGFDSVVCVCNTLLRMYAGAGRSVE-ANLVFKQMPTKDLISWNSLMASFVNDGR 342

Query: 219 FDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTA 278
             DAL     M  +G + N VT  +ALAAC      E G  +H  +  +G   + ++G A
Sbjct: 343 SLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNA 402

Query: 279 LIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRAD 338
           L+ MY K G + E  RV   +  ++V  WNA+I G A  +  ++A+  F  M  +GV ++
Sbjct: 403 LVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSN 462

Query: 339 EVTLLAVLSACNHSG-LVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFE 397
            +T+++VLSAC   G L++ G+ +  ++V   +    +VK+   ++ + A+ G L  + +
Sbjct: 463 YITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKN--SLITMYAKCGDLSSSQD 520

Query: 398 VMRCMPFDPTKAMWGSLLVSSKSQG 422
           +   +  +     W ++L ++   G
Sbjct: 521 LFNGLD-NRNIITWNAMLAANAHHG 544



 Score =  111 bits (277), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 151/315 (47%), Gaps = 23/315 (7%)

Query: 118 LTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCH-----FAQAQSVHAHVLKLGHLHDIY 172
           L  +  F  M    I P+     F+  SL   C      F +   VH  V K G L D+Y
Sbjct: 40  LEGMEFFRKMCDLGIKPS----SFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVY 95

Query: 173 VHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYA 232
           V  ++L +Y     L S  R++F+EM  R+VVSWT +++G+ + G+ ++ +  ++ M+  
Sbjct: 96  VSTAILHLYGVYG-LVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGE 154

Query: 233 GVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEG 292
           GV  N  +M   +++C       +G  I   + ++G E  + +  +LI M    G V+  
Sbjct: 155 GVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYA 214

Query: 293 VRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQ--DGVRADEV-TLLAVLSAC 349
             +F  + E++  +WN++    A     EE+ R+F+ M +  D V +  V TLL+VL   
Sbjct: 215 NYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHV 274

Query: 350 NHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKA 409
           +H      GR I G +V  K GF   V     ++ + A +G   EA  V + M   PTK 
Sbjct: 275 DHQ---KWGRGIHGLVV--KMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQM---PTKD 326

Query: 410 M--WGSLLVSSKSQG 422
           +  W SL+ S  + G
Sbjct: 327 LISWNSLMASFVNDG 341



 Score = 99.8 bits (247), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 116/237 (48%), Gaps = 4/237 (1%)

Query: 192 RQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADS 251
           R LFD M  R+ VSW  M+ G    G + + +  F +M   G+ P+   + + + AC  S
Sbjct: 12  RHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRS 71

Query: 252 GAV-EMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAV 310
           G++   G  +H F+ ++G   DV + TA++ +Y   G V    +VF  + ++NV +W ++
Sbjct: 72  GSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSL 131

Query: 311 IKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKY 370
           + G +     EE I ++  M  +GV  +E ++  V+S+C       +GRQI G +V  K 
Sbjct: 132 MVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVV--KS 189

Query: 371 GFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFS 427
           G    +     ++ +L   G++  A  +   M    T + W S+  +    G +E S
Sbjct: 190 GLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTIS-WNSIAAAYAQNGHIEES 245



 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 4/145 (2%)

Query: 282 MYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVT 341
           MY K GRV+    +F  +  +N  +WN ++ G+       E +  F +M   G++     
Sbjct: 1   MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFV 60

Query: 342 LLAVLSACNHSG-LVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMR 400
           + ++++AC  SG +   G Q+ GF+   K G + +V     ++ L    G +  + +V  
Sbjct: 61  IASLVTACGRSGSMFREGVQVHGFVA--KSGLLSDVYVSTAILHLYGVYGLVSCSRKVFE 118

Query: 401 CMPFDPTKAMWGSLLVSSKSQGDLE 425
            MP D     W SL+V    +G+ E
Sbjct: 119 EMP-DRNVVSWTSLMVGYSDKGEPE 142


>AT1G16480.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:5625742-5628605 REVERSE
           LENGTH=928
          Length = 928

 Score =  204 bits (519), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 119/396 (30%), Positives = 204/396 (51%), Gaps = 6/396 (1%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +PR  V  +N+LI  ++       +L     F  M    +  N+ T   +  +   P   
Sbjct: 406 MPRRDVVAWNALIGGYAEDEDPDKALAA---FQTMRVEGVSSNYITVVSVLSACLLPGDL 462

Query: 153 AQ-AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIM 211
            +  + +HA+++  G   D +V NSL+ +YA    L S  + LF+ + +R++++W  M+ 
Sbjct: 463 LERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSS-SQDLFNGLDNRNIITWNAMLA 521

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
              + G  ++ L    +M+  GV+ ++ +    L+A A    +E G  +H    + G+E 
Sbjct: 522 ANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEH 581

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRME 331
           D  +  A  DMY+KCG + E V++      +++ +WN +I  L      EE    F+ M 
Sbjct: 582 DSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEML 641

Query: 332 QDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGS 391
           + G++   VT +++L+AC+H GLVD G   +  +    +G  P ++H  C++DLL RSG 
Sbjct: 642 EMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIAR-DFGLEPAIEHCICVIDLLGRSGR 700

Query: 392 LREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNL 451
           L EA   +  MP  P   +W SLL S K  G+L+     A  L +LEP + + YV  SN+
Sbjct: 701 LAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNM 760

Query: 452 YAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQ 487
           +A  GRW+DVE VR  M  + + K   CS V+++++
Sbjct: 761 FATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDK 796



 Score =  132 bits (332), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 101/385 (26%), Positives = 179/385 (46%), Gaps = 13/385 (3%)

Query: 39  LLKDFCHSRLHVQQIQAQLILHNLQSNPTIAHHFITVCQSHXXXXXXXXXXXXXVPRPHV 98
           LLKD    R    QI  Q++   L+S   + +  I++  S                R  +
Sbjct: 155 LLKDESLGR----QIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTI 210

Query: 99  FIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSV 158
             +NS+  A++ + H   S    S+    H      N  T   L   L    H    + +
Sbjct: 211 S-WNSIAAAYAQNGHIEESFRIFSLMRRFHDEV---NSTTVSTLLSVLGHVDHQKWGRGI 266

Query: 159 HAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGK 218
           H  V+K+G    + V N+LL +YA + R       +F +M  +D++SW  ++  F N G+
Sbjct: 267 HGLVVKMGFDSVVCVCNTLLRMYAGAGRSVE-ANLVFKQMPTKDLISWNSLMASFVNDGR 325

Query: 219 FDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTA 278
             DAL     M  +G + N VT  +ALAAC      E G  +H  +  +G   + ++G A
Sbjct: 326 SLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNA 385

Query: 279 LIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRAD 338
           L+ MY K G + E  RV   +  ++V  WNA+I G A  +  ++A+  F  M  +GV ++
Sbjct: 386 LVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSN 445

Query: 339 EVTLLAVLSACNHSG-LVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFE 397
            +T+++VLSAC   G L++ G+ +  ++V   +    +VK+   ++ + A+ G L  + +
Sbjct: 446 YITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKN--SLITMYAKCGDLSSSQD 503

Query: 398 VMRCMPFDPTKAMWGSLLVSSKSQG 422
           +   +  +     W ++L ++   G
Sbjct: 504 LFNGLD-NRNIITWNAMLAANAHHG 527



 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 151/315 (47%), Gaps = 23/315 (7%)

Query: 118 LTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCH-----FAQAQSVHAHVLKLGHLHDIY 172
           L  +  F  M    I P+     F+  SL   C      F +   VH  V K G L D+Y
Sbjct: 23  LEGMEFFRKMCDLGIKPS----SFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVY 78

Query: 173 VHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYA 232
           V  ++L +Y     L S  R++F+EM  R+VVSWT +++G+ + G+ ++ +  ++ M+  
Sbjct: 79  VSTAILHLYGVYG-LVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGE 137

Query: 233 GVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEG 292
           GV  N  +M   +++C       +G  I   + ++G E  + +  +LI M    G V+  
Sbjct: 138 GVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYA 197

Query: 293 VRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQ--DGVRADEV-TLLAVLSAC 349
             +F  + E++  +WN++    A     EE+ R+F+ M +  D V +  V TLL+VL   
Sbjct: 198 NYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHV 257

Query: 350 NHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKA 409
           +H      GR I G +V  K GF   V     ++ + A +G   EA  V + M   PTK 
Sbjct: 258 DHQ---KWGRGIHGLVV--KMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQM---PTKD 309

Query: 410 M--WGSLLVSSKSQG 422
           +  W SL+ S  + G
Sbjct: 310 LISWNSLMASFVNDG 324



 Score = 92.0 bits (227), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 112/231 (48%), Gaps = 4/231 (1%)

Query: 198 MTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAV-EM 256
           M  R+ VSW  M+ G    G + + +  F +M   G+ P+   + + + AC  SG++   
Sbjct: 1   MPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFRE 60

Query: 257 GAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLAL 316
           G  +H F+ ++G   DV + TA++ +Y   G V    +VF  + ++NV +W +++ G + 
Sbjct: 61  GVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSD 120

Query: 317 AKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNV 376
               EE I ++  M  +GV  +E ++  V+S+C       +GRQI G +V  K G    +
Sbjct: 121 KGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVV--KSGLESKL 178

Query: 377 KHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFS 427
                ++ +L   G++  A  +   M    T + W S+  +    G +E S
Sbjct: 179 AVENSLISMLGSMGNVDYANYIFDQMSERDTIS-WNSIAAAYAQNGHIEES 228


>AT5G55740.1 | Symbols: CRR21 | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:22561941-22564433 REVERSE
           LENGTH=830
          Length = 830

 Score =  204 bits (518), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 113/289 (39%), Positives = 172/289 (59%), Gaps = 3/289 (1%)

Query: 202 DVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIH 261
           +++SWT M+ G    G  ++A+L   +MQ +G+ PN  ++  AL+ACA   ++ +G  IH
Sbjct: 510 NLISWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNAFSITVALSACAHLASLHIGRTIH 569

Query: 262 DFIRRNGWELDVV-LGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSG 320
            +I RN     +V + T+L+DMYAKCG + +  +VF S     +   NA+I   AL  + 
Sbjct: 570 GYIIRNLQHSSLVSIETSLVDMYAKCGDINKAEKVFGSKLYSELPLSNAMISAYALYGNL 629

Query: 321 EEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYA 380
           +EAI L+  +E  G++ D +T+  VLSACNH+G ++   +IF  +V  K    P ++HY 
Sbjct: 630 KEAIALYRSLEGVGLKPDNITITNVLSACNHAGDINQAIEIFTDIVS-KRSMKPCLEHYG 688

Query: 381 CMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPA 440
            MVDLLA +G   +A  ++  MPF P   M  SL+ S   Q   E  ++++RKL+E EP 
Sbjct: 689 LMVDLLASAGETEKALRLIEEMPFKPDARMIQSLVASCNKQRKTELVDYLSRKLLESEPE 748

Query: 441 NSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVE-EQG 488
           NS  YV +SN YA  G WD+V K+R MMK + L K  GCS +++  E+G
Sbjct: 749 NSGNYVTISNAYAVEGSWDEVVKMREMMKAKGLKKKPGCSWIQITGEEG 797



 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 158/303 (52%), Gaps = 12/303 (3%)

Query: 124 FAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAA 183
           F  M  N I P+++  P + K+  A       + VH +V+K G    ++V +SL  +Y  
Sbjct: 161 FVEMLENEIFPDNFVVPNVCKACGALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYGK 220

Query: 184 SPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVN 243
              L     ++FDE+  R+ V+W  +++G+   GK ++A+  F  M+  GV P RVT+  
Sbjct: 221 CGVLDD-ASKVFDEIPDRNAVAWNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVST 279

Query: 244 ALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKN 303
            L+A A+ G VE G   H     NG ELD +LGT+L++ Y K G +E    VF  + EK+
Sbjct: 280 CLSASANMGGVEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKD 339

Query: 304 VFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFG 363
           V TWN +I G       E+AI +   M  + ++ D VTL  ++SA   +  + +G+++  
Sbjct: 340 VVTWNLIISGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTENLKLGKEVQC 399

Query: 364 FLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKA----MWGSLLVSSK 419
           + +  ++ F  ++   + ++D+ A+ GS+ +A +V     FD T      +W +LL +  
Sbjct: 400 YCI--RHSFESDIVLASTVMDMYAKCGSIVDAKKV-----FDSTVEKDLILWNTLLAAYA 452

Query: 420 SQG 422
             G
Sbjct: 453 ESG 455



 Score =  127 bits (318), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 152/310 (49%), Gaps = 6/310 (1%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P  +   +N+L+  +  +  +  ++    +F+ M +  + P   T      + +     
Sbjct: 234 IPDRNAVAWNALMVGYVQNGKNEEAI---RLFSDMRKQGVEPTRVTVSTCLSASANMGGV 290

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMG 212
            + +  HA  +  G   D  +  SLL  Y     L      +FD M  +DVV+W ++I G
Sbjct: 291 EEGKQSHAIAIVNGMELDNILGTSLLNFYCKVG-LIEYAEMVFDRMFEKDVVTWNLIISG 349

Query: 213 FRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELD 272
           +   G  +DA+   + M+   +  + VT+   ++A A +  +++G  +  +  R+ +E D
Sbjct: 350 YVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTENLKLGKEVQCYCIRHSFESD 409

Query: 273 VVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQ 332
           +VL + ++DMYAKCG + +  +VF S  EK++  WN ++   A +    EA+RLF  M+ 
Sbjct: 410 IVLASTVMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGLSGEALRLFYGMQL 469

Query: 333 DGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSL 392
           +GV  + +T   ++ +   +G VD  + +  FL     G IPN+  +  M++ + ++G  
Sbjct: 470 EGVPPNVITWNLIILSLLRNGQVDEAKDM--FLQMQSSGIIPNLISWTTMMNGMVQNGCS 527

Query: 393 REAFEVMRCM 402
            EA   +R M
Sbjct: 528 EEAILFLRKM 537



 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 106/211 (50%), Gaps = 3/211 (1%)

Query: 152 FAQAQSVHAHVLKLGHLH--DIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVM 209
            +  + +HA +LK G  +  + Y+   L+  YA    L  +   LF ++  R+V SW  +
Sbjct: 86  LSTGKQIHARILKNGDFYARNEYIETKLVIFYAKCDAL-EIAEVLFSKLRVRNVFSWAAI 144

Query: 210 IMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGW 269
           I      G  + AL+ F +M    + P+   + N   AC        G  +H ++ ++G 
Sbjct: 145 IGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALKWSRFGRGVHGYVVKSGL 204

Query: 270 ELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNR 329
           E  V + ++L DMY KCG +++  +VF  + ++N   WNA++ G       EEAIRLF+ 
Sbjct: 205 EDCVFVASSLADMYGKCGVLDDASKVFDEIPDRNAVAWNALMVGYVQNGKNEEAIRLFSD 264

Query: 330 MEQDGVRADEVTLLAVLSACNHSGLVDMGRQ 360
           M + GV    VT+   LSA  + G V+ G+Q
Sbjct: 265 MRKQGVEPTRVTVSTCLSASANMGGVEEGKQ 295


>AT1G09220.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:2977952-2979466 REVERSE
           LENGTH=504
          Length = 504

 Score =  204 bits (518), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 149/507 (29%), Positives = 242/507 (47%), Gaps = 63/507 (12%)

Query: 32  FSDRAVTLLKDF-------CHSRL----HVQQIQ-AQLILHNLQSNPTIAHHFITVCQSH 79
           FS R +T L+ +       C+S L    ++  IQ  Q ++   +SN  I H       SH
Sbjct: 4   FSSRRITSLRSYTIIKHSSCYSTLVSDGNIFSIQHFQSLMQKYESNLKIIHQL----HSH 59

Query: 80  XXXXXXXXXXXXXVPRPHVFIFNSLIRAFS------HSHHHHNSLTPLSIFAHMHRNTIL 133
                             +F+FN L+R +S      H++  ++ L  L  F   H  ++ 
Sbjct: 60  FTTSGFLLLHQKQ-NSGKLFLFNPLLRCYSLGETPLHAYFLYDQLQRLH-FLSDHNKSLP 117

Query: 134 P-NHYTFPFLFKSLSAP--CHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSL 190
           P + +T+ FL K+ S P          +H   LKLG    +YV  +L+G+Y     +   
Sbjct: 118 PFDSFTYLFLLKASSNPRFPSLLLGIGLHGLTLKLGFESHVYVQTALVGMYLVGGNMID- 176

Query: 191 CRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQ-------------YA----- 232
             ++FDEM  R+ V+W VMI G  N G F+ AL   E+M              YA     
Sbjct: 177 AHKVFDEMPERNPVTWNVMITGLTNLGDFEKALCFLEKMPNRTVVSWTTIIDGYARVDKP 236

Query: 233 --------------GVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGW-ELDVVLGT 277
                          + PN +T++  L A  + G ++M   +H ++ + G+   D+ +  
Sbjct: 237 KEAILLFSRMVACDAIKPNEITILAILPAVWNLGDLKMCGSVHAYVGKRGFVPCDIRVTN 296

Query: 278 ALIDMYAKCGRVEEGVRVFSSVK--EKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGV 335
           +LID YAKCG ++   + F  +    KN+ +W  +I   A+   G+EA+ +F  ME+ G+
Sbjct: 297 SLIDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTTMISAFAIHGMGKEAVSMFKDMERLGL 356

Query: 336 RADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREA 395
           + + VT+++VL+AC+H GL +     F   +  +Y   P+VKHY C+VD+L R G L EA
Sbjct: 357 KPNRVTMISVLNACSHGGLAEEEFLEFFNTMVNEYKITPDVKHYGCLVDMLRRKGRLEEA 416

Query: 396 FEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEM 455
            ++   +P +    +W  LL +     D E +E V RKL+ELE ++   YV +SN++   
Sbjct: 417 EKIALEIPIEEKAVVWRMLLGACSVYDDAELAERVTRKLMELERSHGGDYVLMSNIFCGT 476

Query: 456 GRWDDVEKVRGMMKDRQLTKDLGCSSV 482
           GR+ D ++ R  M  R + K  G S V
Sbjct: 477 GRFLDAQRFRKQMDVRGVAKLPGHSQV 503


>AT3G51320.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:19049853-19051445 REVERSE
           LENGTH=530
          Length = 530

 Score =  203 bits (517), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 125/402 (31%), Positives = 194/402 (48%), Gaps = 34/402 (8%)

Query: 121 LSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGV 180
           L  +  + R   +P+ YTF  L   +   C     +  H   +K G    + V NSL+ +
Sbjct: 103 LGFYFDILRFGFVPDSYTFVSLISCIEKTCCVDSGKMCHGQAIKHGCDQVLPVQNSLMHM 162

Query: 181 YAA------SPRLF----------------SLCR--------QLFDEMTHRDVVSWTVMI 210
           Y        + +LF                 + R        +LFDEM  ++++SW +MI
Sbjct: 163 YTCCGALDLAKKLFVEIPKRDIVSWNSIIAGMVRNGDVLAAHKLFDEMPDKNIISWNIMI 222

Query: 211 MGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWE 270
             +  A     ++  F +M  AG   N  T+V  L AC  S  ++ G  +H  + R    
Sbjct: 223 SAYLGANNPGVSISLFREMVRAGFQGNESTLVLLLNACGRSARLKEGRSVHASLIRTFLN 282

Query: 271 LDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRM 330
             VV+ TALIDMY KC  V    R+F S+  +N  TWN +I    L    E  + LF  M
Sbjct: 283 SSVVIDTALIDMYGKCKEVGLARRIFDSLSIRNKVTWNVMILAHCLHGRPEGGLELFEAM 342

Query: 331 EQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSG 390
               +R DEVT + VL  C  +GLV  G+  +  +V+ ++   PN  H  CM +L + +G
Sbjct: 343 INGMLRPDEVTFVGVLCGCARAGLVSQGQSYYSLMVD-EFQIKPNFGHQWCMANLYSSAG 401

Query: 391 SLREAFEVMRCMPFD---PTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVH 447
              EA E ++ +P +   P    W +LL SS+  G+    E +A+ L+E +P N  YY  
Sbjct: 402 FPEEAEEALKNLPDEDVTPESTKWANLLSSSRFTGNPTLGESIAKSLIETDPLNYKYYHL 461

Query: 448 LSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
           L N+Y+  GRW+DV +VR M+K+R++ +  GC  V+++E  H
Sbjct: 462 LMNIYSVTGRWEDVNRVREMVKERKIGRIPGCGLVDLKEIVH 503



 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 98/214 (45%), Gaps = 7/214 (3%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P  ++  +N +I A+  ++   N    +S+F  M R     N  T   L  +       
Sbjct: 210 MPDKNIISWNIMISAYLGAN---NPGVSISLFREMVRAGFQGNESTLVLLLNACGRSARL 266

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMG 212
            + +SVHA +++      + +  +L+ +Y     +  L R++FD ++ R+ V+W VMI+ 
Sbjct: 267 KEGRSVHASLIRTFLNSSVVIDTALIDMYGKCKEV-GLARRIFDSLSIRNKVTWNVMILA 325

Query: 213 FRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELD 272
               G+ +  L  FE M    + P+ VT V  L  CA +G V  G   +  +  + +++ 
Sbjct: 326 HCLHGRPEGGLELFEAMINGMLRPDEVTFVGVLCGCARAGLVSQGQSYYSLM-VDEFQIK 384

Query: 273 VVLG--TALIDMYAKCGRVEEGVRVFSSVKEKNV 304
              G    + ++Y+  G  EE      ++ +++V
Sbjct: 385 PNFGHQWCMANLYSSAGFPEEAEEALKNLPDEDV 418


>AT2G17210.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:7485398-7487602 REVERSE
           LENGTH=715
          Length = 715

 Score =  203 bits (516), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 121/385 (31%), Positives = 213/385 (55%), Gaps = 21/385 (5%)

Query: 97  HVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQ-- 154
           ++  +NS++  F H+  +  +L    +F  M +  +  +  T   L +     C F +  
Sbjct: 292 NIVSWNSILAGFVHNQRYDEAL---EMFHLMVQEAVEVDEVTVVSLLR----VCKFFEQP 344

Query: 155 --AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMG 212
              +S+H  +++ G+  +    +SL+  Y  S  L      + D MT++DVVS + MI G
Sbjct: 345 LPCKSIHGVIIRRGYESNEVALSSLIDAYT-SCSLVDDAGTVLDSMTYKDVVSCSTMISG 403

Query: 213 FRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDF-IRRNGWEL 271
             +AG+ D+A+  F  M+     PN +T+++ L AC+ S  +    W H   IRR+    
Sbjct: 404 LAHAGRSDEAISIFCHMRDT---PNAITVISLLNACSVSADLRTSKWAHGIAIRRSLAIN 460

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRME 331
           D+ +GT+++D YAKCG +E   R F  + EKN+ +W  +I   A+    ++A+ LF+ M+
Sbjct: 461 DISVGTSIVDAYAKCGAIEMARRTFDQITEKNIISWTVIISAYAINGLPDKALALFDEMK 520

Query: 332 QDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGS 391
           Q G   + VT LA LSACNH GLV  G  IF  +VE  +   P+++HY+C+VD+L+R+G 
Sbjct: 521 QKGYTPNAVTYLAALSACNHGGLVKKGLMIFKSMVEEDHK--PSLQHYSCIVDMLSRAGE 578

Query: 392 LREAFEVMRCMPFD--PTKAMWGSLLVSSKSQ-GDLEFSEFVARKLVELEPANSAYYVHL 448
           +  A E+++ +P D     + WG++L   +++   L  +  V  +++ELEP  S+ Y+  
Sbjct: 579 IDTAVELIKNLPEDVKAGASAWGAILSGCRNRFKKLIITSEVVAEVLELEPLCSSGYLLA 638

Query: 449 SNLYAEMGRWDDVEKVRGMMKDRQL 473
           S+ +A    W+DV  +R ++K+R++
Sbjct: 639 SSTFAAEKSWEDVAMMRRLVKERKV 663



 Score =  122 bits (306), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 136/253 (53%), Gaps = 6/253 (2%)

Query: 154 QAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGF 213
             + +H +V++ G      V NS+L +YA S  L +  R+LFDEM+ RDV+SW+V+I  +
Sbjct: 143 DGEKIHGYVIRSGFCGISSVQNSILCMYADSDSLSA--RKLFDEMSERDVISWSVVIRSY 200

Query: 214 RNAGKFDDALLAFEQMQY-AGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL- 271
             + +    L  F++M + A   P+ VT+ + L AC     +++G  +H F  R G++L 
Sbjct: 201 VQSKEPVVGLKLFKEMVHEAKTEPDCVTVTSVLKACTVMEDIDVGRSVHGFSIRRGFDLA 260

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRME 331
           DV +  +LIDMY+K   V+   RVF     +N+ +WN+++ G    +  +EA+ +F+ M 
Sbjct: 261 DVFVCNSLIDMYSKGFDVDSAFRVFDETTCRNIVSWNSILAGFVHNQRYDEALEMFHLMV 320

Query: 332 QDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGS 391
           Q+ V  DEVT++++L  C         + I G ++  + G+  N    + ++D       
Sbjct: 321 QEAVEVDEVTVVSLLRVCKFFEQPLPCKSIHGVII--RRGYESNEVALSSLIDAYTSCSL 378

Query: 392 LREAFEVMRCMPF 404
           + +A  V+  M +
Sbjct: 379 VDDAGTVLDSMTY 391



 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 135/304 (44%), Gaps = 41/304 (13%)

Query: 121 LSIFAHMHRNTILPNH-YTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLG 179
           +S ++ + R  +  N  + FP +FK+ +      Q  S+    +K G L           
Sbjct: 29  VSGYSEIQRAGVQFNDPFVFPIVFKACAKLSWLFQGNSIADFYMKCGDL----------- 77

Query: 180 VYAASPRLFSLCRQL--FDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPN 237
                      C  L  FD M  RD VSW V++ G  + G  ++ L  F +++  G  PN
Sbjct: 78  -----------CSGLREFDCMNSRDSVSWNVIVFGLLDYGFEEEGLWWFSKLRVWGFEPN 126

Query: 238 RVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFS 297
             T+V  + AC        G  IH ++ R+G+     +  +++ MYA    +    ++F 
Sbjct: 127 TSTLVLVIHAC--RSLWFDGEKIHGYVIRSGFCGISSVQNSILCMYADSDSL-SARKLFD 183

Query: 298 SVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDG-VRADEVTLLAVLSACNHSGLVD 356
            + E++V +W+ VI+    +K     ++LF  M  +     D VT+ +VL AC     +D
Sbjct: 184 EMSERDVISWSVVIRSYVQSKEPVVGLKLFKEMVHEAKTEPDCVTVTSVLKACTVMEDID 243

Query: 357 MGRQIFGFLVEGKYGF-IPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAM----W 411
           +GR + GF +  + GF + +V     ++D+ ++   +  AF V     FD T       W
Sbjct: 244 VGRSVHGFSI--RRGFDLADVFVCNSLIDMYSKGFDVDSAFRV-----FDETTCRNIVSW 296

Query: 412 GSLL 415
            S+L
Sbjct: 297 NSIL 300



 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 82/185 (44%), Gaps = 22/185 (11%)

Query: 216 AGKFDDALLAFEQMQYAGVAPNR-VTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVV 274
           +GK+ + +  + ++Q AGV  N          ACA        +W+              
Sbjct: 22  SGKWREVVSGYSEIQRAGVQFNDPFVFPIVFKACAKL------SWLFQ------------ 63

Query: 275 LGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDG 334
            G ++ D Y KCG +  G+R F  +  ++  +WN ++ GL      EE +  F+++   G
Sbjct: 64  -GNSIADFYMKCGDLCSGLREFDCMNSRDSVSWNVIVFGLLDYGFEEEGLWWFSKLRVWG 122

Query: 335 VRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLRE 394
              +  TL+ V+ AC    L   G +I G+++   +  I +V++    +   + S S R+
Sbjct: 123 FEPNTSTLVLVIHACR--SLWFDGEKIHGYVIRSGFCGISSVQNSILCMYADSDSLSARK 180

Query: 395 AFEVM 399
            F+ M
Sbjct: 181 LFDEM 185


>AT4G04370.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:2134060-2136249 REVERSE
           LENGTH=729
          Length = 729

 Score =  202 bits (515), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 114/340 (33%), Positives = 187/340 (55%), Gaps = 3/340 (0%)

Query: 152 FAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIM 211
           F    SVH +VL+ G+  D    NSL+ +YA    L      +F+ M  RD+VSW  +I 
Sbjct: 362 FDLGASVHGYVLRHGYTLDTPALNSLITMYAKCGHL-DKSLVIFERMNERDLVSWNAIIS 420

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAP-NRVTMVNALAACADSGAVEMGAWIHDFIRRNGWE 270
           G+        ALL FE+M++  V   +  T+V+ L AC+ +GA+ +G  IH  + R+   
Sbjct: 421 GYAQNVDLCKALLLFEEMKFKTVQQVDSFTVVSLLQACSSAGALPVGKLIHCIVIRSFIR 480

Query: 271 LDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRM 330
              ++ TAL+DMY+KCG +E   R F S+  K+V +W  +I G      G+ A+ +++  
Sbjct: 481 PCSLVDTALVDMYSKCGYLEAAQRCFDSISWKDVVSWGILIAGYGFHGKGDIALEIYSEF 540

Query: 331 EQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSG 390
              G+  + V  LAVLS+C+H+G+V  G +IF  +V   +G  PN +H AC+VDLL R+ 
Sbjct: 541 LHSGMEPNHVIFLAVLSSCSHNGMVQQGLKIFSSMVR-DFGVEPNHEHLACVVDLLCRAK 599

Query: 391 SLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSN 450
            + +AF+  +     P+  + G +L + ++ G  E  + +   ++EL+P ++ +YV L +
Sbjct: 600 RIEDAFKFYKENFTRPSIDVLGIILDACRANGKTEVEDIICEDMIELKPGDAGHYVKLGH 659

Query: 451 LYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGHT 490
            +A M RWDDV +    M+   L K  G S +E+  +  T
Sbjct: 660 SFAAMKRWDDVSESWNQMRSLGLKKLPGWSKIEMNGKTTT 699



 Score =  149 bits (375), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 93/305 (30%), Positives = 160/305 (52%), Gaps = 13/305 (4%)

Query: 101 FNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHA 160
           FNS I   S SH  H  +  LS F+ M  N +LP+ +TFP L K+ ++    +   S+H 
Sbjct: 14  FNSHINHLS-SHGDHKQV--LSTFSSMLANKLLPDTFTFPSLLKACASLQRLSFGLSIHQ 70

Query: 161 HVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFD 220
            VL  G   D Y+ +SL+ +YA    L +  R++F+EM  RDVV WT MI  +  AG   
Sbjct: 71  QVLVNGFSSDFYISSSLVNLYAKFG-LLAHARKVFEEMRERDVVHWTAMIGCYSRAGIVG 129

Query: 221 DALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAW--IHDFIRRNGWELDVVLGTA 278
           +A     +M++ G+ P  VT++  L     SG +E+     +HDF    G++ D+ +  +
Sbjct: 130 EACSLVNEMRFQGIKPGPVTLLEML-----SGVLEITQLQCLHDFAVIYGFDCDIAVMNS 184

Query: 279 LIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRAD 338
           ++++Y KC  V +   +F  ++++++ +WN +I G A   +  E ++L  RM  DG+R D
Sbjct: 185 MLNLYCKCDHVGDAKDLFDQMEQRDMVSWNTMISGYASVGNMSEILKLLYRMRGDGLRPD 244

Query: 339 EVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEV 398
           + T  A LS       ++MGR +   +V  K GF  ++     ++ +  + G    ++ V
Sbjct: 245 QQTFGASLSVSGTMCDLEMGRMLHCQIV--KTGFDVDMHLKTALITMYLKCGKEEASYRV 302

Query: 399 MRCMP 403
           +  +P
Sbjct: 303 LETIP 307



 Score =  133 bits (334), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 138/281 (49%), Gaps = 6/281 (2%)

Query: 122 SIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVY 181
           S+   M    I P   T   L + LS      Q Q +H   +  G   DI V NS+L +Y
Sbjct: 133 SLVNEMRFQGIKPGPVT---LLEMLSGVLEITQLQCLHDFAVIYGFDCDIAVMNSMLNLY 189

Query: 182 AASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTM 241
                +    + LFD+M  RD+VSW  MI G+ + G   + L    +M+  G+ P++ T 
Sbjct: 190 CKCDHVGD-AKDLFDQMEQRDMVSWNTMISGYASVGNMSEILKLLYRMRGDGLRPDQQTF 248

Query: 242 VNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKE 301
             +L+       +EMG  +H  I + G+++D+ L TALI MY KCG+ E   RV  ++  
Sbjct: 249 GASLSVSGTMCDLEMGRMLHCQIVKTGFDVDMHLKTALITMYLKCGKEEASYRVLETIPN 308

Query: 302 KNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQI 361
           K+V  W  +I GL      E+A+ +F+ M Q G       + +V+++C   G  D+G  +
Sbjct: 309 KDVVCWTVMISGLMRLGRAEKALIVFSEMLQSGSDLSSEAIASVVASCAQLGSFDLGASV 368

Query: 362 FGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCM 402
            G+++  ++G+  +      ++ + A+ G L ++  +   M
Sbjct: 369 HGYVL--RHGYTLDTPALNSLITMYAKCGHLDKSLVIFERM 407



 Score =  132 bits (331), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 163/321 (50%), Gaps = 20/321 (6%)

Query: 121 LSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGV 180
           L +   M  + + P+  TF          C     + +H  ++K G   D+++  +L+ +
Sbjct: 230 LKLLYRMRGDGLRPDQQTFGASLSVSGTMCDLEMGRMLHCQIVKTGFDVDMHLKTALITM 289

Query: 181 YAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVT 240
           Y    +  +  R L + + ++DVV WTVMI G    G+ + AL+ F +M  +G   +   
Sbjct: 290 YLKCGKEEASYRVL-ETIPNKDVVCWTVMISGLMRLGRAEKALIVFSEMLQSGSDLSSEA 348

Query: 241 MVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVK 300
           + + +A+CA  G+ ++GA +H ++ R+G+ LD     +LI MYAKCG +++ + +F  + 
Sbjct: 349 IASVVASCAQLGSFDLGASVHGYVLRHGYTLDTPALNSLITMYAKCGHLDKSLVIFERMN 408

Query: 301 EKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGV-RADEVTLLAVLSACNHSGLVDMGR 359
           E+++ +WNA+I G A      +A+ LF  M+   V + D  T++++L AC+ +G + +G+
Sbjct: 409 ERDLVSWNAIISGYAQNVDLCKALLLFEEMKFKTVQQVDSFTVVSLLQACSSAGALPVGK 468

Query: 360 QIFGFLVEGKYGFI-PNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTK----AMWGSL 414
            I   ++     FI P       +VD+ ++ G L  A    RC  FD         WG L
Sbjct: 469 LIHCIVIR---SFIRPCSLVDTALVDMYSKCGYLEAA---QRC--FDSISWKDVVSWGIL 520

Query: 415 LVSSK--SQGDLE---FSEFV 430
           +       +GD+    +SEF+
Sbjct: 521 IAGYGFHGKGDIALEIYSEFL 541


>AT3G25060.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:9128516-9130321 FORWARD
           LENGTH=601
          Length = 601

 Score =  201 bits (510), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 114/398 (28%), Positives = 200/398 (50%), Gaps = 6/398 (1%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           + +  V  + +++  F+ +     SL  +  +  M       +      L ++       
Sbjct: 177 MAKRDVICWTTMVTGFAQAG---KSLKAVEFYREMQNEGFGRDRVVMLGLLQASGDLGDT 233

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMG 212
              +SVH ++ + G   ++ V  SL+ +YA       +  ++F  M  +  VSW  +I G
Sbjct: 234 KMGRSVHGYLYRTGLPMNVVVETSLVDMYAKVG-FIEVASRVFSRMMFKTAVSWGSLISG 292

Query: 213 FRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELD 272
           F   G  + A  A  +MQ  G  P+ VT+V  L AC+  G+++ G  +H +I +    LD
Sbjct: 293 FAQNGLANKAFEAVVEMQSLGFQPDLVTLVGVLVACSQVGSLKTGRLVHCYILKR-HVLD 351

Query: 273 VVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQ 332
            V  TAL+DMY+KCG +     +F  V  K++  WN +I    +  +G+E + LF +M +
Sbjct: 352 RVTATALMDMYSKCGALSSSREIFEHVGRKDLVCWNTMISCYGIHGNGQEVVSLFLKMTE 411

Query: 333 DGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSL 392
             +  D  T  ++LSA +HSGLV+ G+  F  ++  KY   P+ KHY C++DLLAR+G +
Sbjct: 412 SNIEPDHATFASLLSALSHSGLVEQGQHWFSVMIN-KYKIQPSEKHYVCLIDLLARAGRV 470

Query: 393 REAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLY 452
            EA +++     D    +W +LL    +  +L   +  A K+++L P +      +SN +
Sbjct: 471 EEALDMINSEKLDNALPIWVALLSGCINHRNLSVGDIAANKILQLNPDSIGIQTLVSNFF 530

Query: 453 AEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGHT 490
           A   +W +V KVR +M++  + K  G S++EV  +  T
Sbjct: 531 ATANKWKEVAKVRKLMRNGAMEKVPGYSAIEVNGELRT 568



 Score =  161 bits (407), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 107/367 (29%), Positives = 177/367 (48%), Gaps = 12/367 (3%)

Query: 35  RAVTLLKDFCHSRLHVQQIQAQLI-LHNLQSNPTIAHHFITVCQSHXXXXXXXXXXXXXV 93
           + +  L+     + H+ QI A +I   NL +  +I+   I  C                +
Sbjct: 18  KRIKFLQSISKLKRHITQIHAFVISTGNLLNGSSISRDLIASC-GRIGEISYARKVFDEL 76

Query: 94  PRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFA 153
           P+  V ++NS+I  +S      N    L ++  M    I P+  TF    K+  +     
Sbjct: 77  PQRGVSVYNSMIVVYSRGK---NPDEVLRLYDQMIAEKIQPDSSTFTMTIKACLSGLVLE 133

Query: 154 QAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGF 213
           + ++V    +  G+ +D++V +S+L +Y    ++      LF +M  RDV+ WT M+ GF
Sbjct: 134 KGEAVWCKAVDFGYKNDVFVCSSVLNLYMKCGKM-DEAEVLFGKMAKRDVICWTTMVTGF 192

Query: 214 RNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDV 273
             AGK   A+  + +MQ  G   +RV M+  L A  D G  +MG  +H ++ R G  ++V
Sbjct: 193 AQAGKSLKAVEFYREMQNEGFGRDRVVMLGLLQASGDLGDTKMGRSVHGYLYRTGLPMNV 252

Query: 274 VLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQD 333
           V+ T+L+DMYAK G +E   RVFS +  K   +W ++I G A      +A      M+  
Sbjct: 253 VVETSLVDMYAKVGFIEVASRVFSRMMFKTAVSWGSLISGFAQNGLANKAFEAVVEMQSL 312

Query: 334 GVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSL- 392
           G + D VTL+ VL AC+  G +  GR +  +++  K   +  V   A M D+ ++ G+L 
Sbjct: 313 GFQPDLVTLVGVLVACSQVGSLKTGRLVHCYIL--KRHVLDRVTATALM-DMYSKCGALS 369

Query: 393 --REAFE 397
             RE FE
Sbjct: 370 SSREIFE 376


>AT5G59600.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:24011315-24012919 REVERSE
           LENGTH=534
          Length = 534

 Score =  201 bits (510), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 110/286 (38%), Positives = 174/286 (60%), Gaps = 9/286 (3%)

Query: 202 DVVSWTVMIMG----FRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMG 257
           DVVSWT +I G    F+N   FD    AF+QM   G+ PN  T++  L AC     ++ G
Sbjct: 252 DVVSWTSIISGLVHNFQNEKAFD----AFKQMLTHGLYPNSATIITLLPACTTLAYMKHG 307

Query: 258 AWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALA 317
             IH +    G E    + +AL+DMY KCG + E + +F    +K   T+N++I   A  
Sbjct: 308 KEIHGYSVVTGLEDHGFVRSALLDMYGKCGFISEAMILFRKTPKKTTVTFNSMIFCYANH 367

Query: 318 KSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVK 377
              ++A+ LF++ME  G + D +T  A+L+AC+H+GL D+G+ +F  L++ KY  +P ++
Sbjct: 368 GLADKAVELFDQMEATGEKLDHLTFTAILTACSHAGLTDLGQNLF-LLMQNKYRIVPRLE 426

Query: 378 HYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVEL 437
           HYACMVDLL R+G L EA+E+++ M  +P   +WG+LL + ++ G++E +   A+ L EL
Sbjct: 427 HYACMVDLLGRAGKLVEAYEMIKAMRMEPDLFVWGALLAACRNHGNMELARIAAKHLAEL 486

Query: 438 EPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVE 483
           EP NS   + L++LYA  G W+ V +++ M+K ++  + LG S VE
Sbjct: 487 EPENSGNGLLLTSLYANAGSWESVVRMKKMIKKKRFRRFLGSSWVE 532



 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 134/282 (47%), Gaps = 9/282 (3%)

Query: 127 MHRNTILPNHY------TFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGV 180
           M + TI+P+ +      ++  L ++      F + + +HAH++  G      +   L+  
Sbjct: 1   MKKLTIVPSSFRLLSIGSYVELIEANGRDRLFCRGRVLHAHLVTSGIARLTRIAAKLVTF 60

Query: 181 YAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVT 240
           Y    ++    R++FDEM  RD+    VMI      G + ++L  F +M   G+  +   
Sbjct: 61  YVECGKVLD-ARKVFDEMPKRDISGCVVMIGACARNGYYQESLDFFREMYKDGLKLDAFI 119

Query: 241 MVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVK 300
           + + L A  +    E G  IH  + +  +E D  + ++LIDMY+K G V    +VFS + 
Sbjct: 120 VPSLLKASRNLLDREFGKMIHCLVLKFSYESDAFIVSSLIDMYSKFGEVGNARKVFSDLG 179

Query: 301 EKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQ 360
           E+++  +NA+I G A     +EA+ L   M+  G++ D +T  A++S  +H    +   +
Sbjct: 180 EQDLVVFNAMISGYANNSQADEALNLVKDMKLLGIKPDVITWNALISGFSHMRNEEKVSE 239

Query: 361 IFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCM 402
           I   +     G+ P+V  +  ++  L  +    +AF+  + M
Sbjct: 240 ILELMCLD--GYKPDVVSWTSIISGLVHNFQNEKAFDAFKQM 279



 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/220 (20%), Positives = 98/220 (44%), Gaps = 8/220 (3%)

Query: 95  RPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQ 154
           +P V  + S+I    H+  +  +      F  M  + + PN  T   L  + +   +   
Sbjct: 250 KPDVVSWTSIISGLVHNFQNEKAFDA---FKQMLTHGLYPNSATIITLLPACTTLAYMKH 306

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFR 214
            + +H + +  G     +V ++LL +Y       S    LF +   +  V++  MI  + 
Sbjct: 307 GKEIHGYSVVTGLEDHGFVRSALLDMYGKCG-FISEAMILFRKTPKKTTVTFNSMIFCYA 365

Query: 215 NAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVV 274
           N G  D A+  F+QM+  G   + +T    L AC+ +G  ++G  +   + +N + +   
Sbjct: 366 NHGLADKAVELFDQMEATGEKLDHLTFTAILTACSHAGLTDLGQNLF-LLMQNKYRIVPR 424

Query: 275 LG--TALIDMYAKCGRVEEGVRVFSSVK-EKNVFTWNAVI 311
           L     ++D+  + G++ E   +  +++ E ++F W A++
Sbjct: 425 LEHYACMVDLLGRAGKLVEAYEMIKAMRMEPDLFVWGALL 464


>AT3G26630.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:9791572-9792939 REVERSE
           LENGTH=455
          Length = 455

 Score =  201 bits (510), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 122/395 (30%), Positives = 198/395 (50%), Gaps = 37/395 (9%)

Query: 44  CHSRLHVQQIQAQLILHNLQSNPTIAHHFITVCQSHXXXXXXXXXXXXXVPRPHVFIFNS 103
           C +   ++QI  ++I HNL ++  +    I+V  S              +  P  F +N 
Sbjct: 30  CSNFSQLKQIHTKIIKHNLTNDQLLVRQLISVSSSFGETQYASLVFNQ-LQSPSTFTWNL 88

Query: 104 LIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVL 163
           +IR+ S +H    +L    +    H++    + +TFPF+ K+  A         VH   +
Sbjct: 89  MIRSLSVNHKPREALLLFILMMISHQSQF--DKFTFPFVIKACLASSSIRLGTQVHGLAI 146

Query: 164 KLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDAL 223
           K G  +D++  N+L+ +Y    +  S  R++FD+M  R +VSWT M+ G  +  + D A 
Sbjct: 147 KAGFFNDVFFQNTLMDLYFKCGKPDS-GRKVFDKMPGRSIVSWTTMLYGLVSNSQLDSAE 205

Query: 224 LAFEQM-------------------------------QYAGVAPNRVTMVNALAACADSG 252
           + F QM                               Q   V PN  T+VN L A    G
Sbjct: 206 IVFNQMPMRNVVSWTAMITAYVKNRRPDEAFQLFRRMQVDDVKPNEFTIVNLLQASTQLG 265

Query: 253 AVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIK 312
           ++ MG W+HD+  +NG+ LD  LGTALIDMY+KCG +++  +VF  ++ K++ TWN++I 
Sbjct: 266 SLSMGRWVHDYAHKNGFVLDCFLGTALIDMYSKCGSLQDARKVFDVMQGKSLATWNSMIT 325

Query: 313 GLALAKSGEEAIRLFNRMEQDG-VRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYG 371
            L +   GEEA+ LF  ME++  V  D +T + VLSAC ++G V  G + F  +++  YG
Sbjct: 326 SLGVHGCGEEALSLFEEMEEEASVEPDAITFVGVLSACANTGNVKDGLRYFTRMIQ-VYG 384

Query: 372 FIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDP 406
             P  +H ACM+ LL ++  + +A  ++  M  DP
Sbjct: 385 ISPIREHNACMIQLLEQALEVEKASNLVESMDSDP 419



 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 135/299 (45%), Gaps = 36/299 (12%)

Query: 151 HFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMI 210
           +F+Q + +H  ++K    +D  +   L+ V ++S         +F+++      +W +MI
Sbjct: 32  NFSQLKQIHTKIIKHNLTNDQLLVRQLISV-SSSFGETQYASLVFNQLQSPSTFTWNLMI 90

Query: 211 MGFRNAGKFDDALLAFEQMQYAGVAP-NRVTMVNALAACADSGAVEMGAWIHDFIRRNGW 269
                  K  +ALL F  M  +  +  ++ T    + AC  S ++ +G  +H    + G+
Sbjct: 91  RSLSVNHKPREALLLFILMMISHQSQFDKFTFPFVIKACLASSSIRLGTQVHGLAIKAGF 150

Query: 270 ELDVVLGTALIDMYAKCGRVEEGVR-------------------------------VFSS 298
             DV     L+D+Y KCG+ + G +                               VF+ 
Sbjct: 151 FNDVFFQNTLMDLYFKCGKPDSGRKVFDKMPGRSIVSWTTMLYGLVSNSQLDSAEIVFNQ 210

Query: 299 VKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMG 358
           +  +NV +W A+I      +  +EA +LF RM+ D V+ +E T++ +L A    G + MG
Sbjct: 211 MPMRNVVSWTAMITAYVKNRRPDEAFQLFRRMQVDDVKPNEFTIVNLLQASTQLGSLSMG 270

Query: 359 RQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVS 417
           R +  +    K GF+ +      ++D+ ++ GSL++A +V   M    + A W S++ S
Sbjct: 271 RWVHDY--AHKNGFVLDCFLGTALIDMYSKCGSLQDARKVFDVMQ-GKSLATWNSMITS 326


>AT3G05340.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:1524071-1526047 REVERSE
           LENGTH=658
          Length = 658

 Score =  199 bits (507), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 108/394 (27%), Positives = 203/394 (51%), Gaps = 5/394 (1%)

Query: 97  HVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQ 156
           +V    ++I     +  H + L    +F+ M R  + PN  T+     + S      + Q
Sbjct: 220 NVITLTAVISGLIENELHEDGL---RLFSLMRRGLVHPNSVTYLSALAACSGSQRIVEGQ 276

Query: 157 SVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNA 216
            +HA + K G   ++ + ++L+ +Y+    +      +F+  T  D VS TV+++G    
Sbjct: 277 QIHALLWKYGIESELCIESALMDMYSKCGSIED-AWTIFESTTEVDEVSMTVILVGLAQN 335

Query: 217 GKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLG 276
           G  ++A+  F +M  AGV  +   +   L       ++ +G  +H  + +  +  +  + 
Sbjct: 336 GSEEEAIQFFIRMLQAGVEIDANVVSAVLGVSFIDNSLGLGKQLHSLVIKRKFSGNTFVN 395

Query: 277 TALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVR 336
             LI+MY+KCG + +   VF  + ++N  +WN++I   A    G  A++L+  M    V+
Sbjct: 396 NGLINMYSKCGDLTDSQTVFRRMPKRNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVK 455

Query: 337 ADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAF 396
             +VT L++L AC+H GL+D GR++   + E  +G  P  +HY C++D+L R+G L+EA 
Sbjct: 456 PTDVTFLSLLHACSHVGLIDKGRELLNEMKE-VHGIEPRTEHYTCIIDMLGRAGLLKEAK 514

Query: 397 EVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMG 456
             +  +P  P   +W +LL +    GD E  E+ A +L +  P +S+ ++ ++N+Y+  G
Sbjct: 515 SFIDSLPLKPDCKIWQALLGACSFHGDTEVGEYAAEQLFQTAPDSSSAHILIANIYSSRG 574

Query: 457 RWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGHT 490
           +W +  K    MK   +TK+ G SS+E+E + H+
Sbjct: 575 KWKERAKTIKRMKAMGVTKETGISSIEIEHKTHS 608



 Score =  128 bits (321), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 143/291 (49%), Gaps = 10/291 (3%)

Query: 135 NHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQL 194
           +H T   +      P      + +HA  +  G+  +I V N L+  Y       S  R +
Sbjct: 154 DHATLTIVLSVCDTPEFCLVTKMIHALAILSGYDKEISVGNKLITSYFKCGCSVS-GRGV 212

Query: 195 FDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAV 254
           FD M+HR+V++ T +I G       +D L  F  M+   V PN VT ++ALAAC+ S  +
Sbjct: 213 FDGMSHRNVITLTAVISGLIENELHEDGLRLFSLMRRGLVHPNSVTYLSALAACSGSQRI 272

Query: 255 EMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGL 314
             G  IH  + + G E ++ + +AL+DMY+KCG +E+   +F S  E +  +   ++ GL
Sbjct: 273 VEGQQIHALLWKYGIESELCIESALMDMYSKCGSIEDAWTIFESTTEVDEVSMTVILVGL 332

Query: 315 ALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYG--- 371
           A   S EEAI+ F RM Q GV  D   + AVL        + +G+Q+   +++ K+    
Sbjct: 333 AQNGSEEEAIQFFIRMLQAGVEIDANVVSAVLGVSFIDNSLGLGKQLHSLVIKRKFSGNT 392

Query: 372 FIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQG 422
           F+ N      ++++ ++ G L ++  V R MP       W S++ +    G
Sbjct: 393 FVNN-----GLINMYSKCGDLTDSQTVFRRMP-KRNYVSWNSMIAAFARHG 437



 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 118/232 (50%), Gaps = 4/232 (1%)

Query: 167 HLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAF 226
           H + + V NSLL +YA   +L    + LFDEM  RDV+S  ++  GF    + +   +  
Sbjct: 86  HRNALVVWNSLLSLYAKCGKLVDAIK-LFDEMPMRDVISQNIVFYGFLRNRETESGFVLL 144

Query: 227 EQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKC 286
           ++M  +G   +  T+   L+ C       +   IH     +G++ ++ +G  LI  Y KC
Sbjct: 145 KRMLGSG-GFDHATLTIVLSVCDTPEFCLVTKMIHALAILSGYDKEISVGNKLITSYFKC 203

Query: 287 GRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVL 346
           G    G  VF  +  +NV T  AVI GL   +  E+ +RLF+ M +  V  + VT L+ L
Sbjct: 204 GCSVSGRGVFDGMSHRNVITLTAVISGLIENELHEDGLRLFSLMRRGLVHPNSVTYLSAL 263

Query: 347 SACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEV 398
           +AC+ S  +  G+QI   L   KYG    +   + ++D+ ++ GS+ +A+ +
Sbjct: 264 AACSGSQRIVEGQQIHALL--WKYGIESELCIESALMDMYSKCGSIEDAWTI 313


>AT1G74400.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:27963953-27965341 FORWARD
           LENGTH=462
          Length = 462

 Score =  199 bits (507), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 114/328 (34%), Positives = 184/328 (56%), Gaps = 11/328 (3%)

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHR-DVVSWTVMIMGF 213
            + +HA V KLG    I +  SL+G Y++   +    RQ+FDE   + ++V WT MI  +
Sbjct: 84  GRQIHALVRKLGFNAVIQIQTSLVGFYSSVGDV-DYARQVFDETPEKQNIVLWTAMISAY 142

Query: 214 RNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHD--FIRRNGWEL 271
                  +A+  F++M+   +  + V +  AL+ACAD GAV+MG  I+     R+    +
Sbjct: 143 TENENSVEAIELFKRMEAEKIELDGVIVTVALSACADLGAVQMGEEIYSRSIKRKRRLAM 202

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRME 331
           D+ L  +L++MY K G  E+  ++F     K+V T+ ++I G AL    +E++ LF +M+
Sbjct: 203 DLTLRNSLLNMYVKSGETEKARKLFDESMRKDVTTYTSMIFGYALNGQAQESLELFKKMK 262

Query: 332 -----QDGV-RADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDL 385
                QD V   ++VT + VL AC+HSGLV+ G++ F  ++   Y   P   H+ CMVDL
Sbjct: 263 TIDQSQDTVITPNDVTFIGVLMACSHSGLVEEGKRHFKSMIM-DYNLKPREAHFGCMVDL 321

Query: 386 LARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYY 445
             RSG L++A E +  MP  P   +W +LL +    G++E  E V R++ EL+  +   Y
Sbjct: 322 FCRSGHLKDAHEFINQMPIKPNTVIWRTLLGACSLHGNVELGEEVQRRIFELDRDHVGDY 381

Query: 446 VHLSNLYAEMGRWDDVEKVRGMMKDRQL 473
           V LSN+YA  G WD+  K+R  ++ R++
Sbjct: 382 VALSNIYASKGMWDEKSKMRDRVRKRRM 409


>AT3G61170.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:22638691-22641237 REVERSE
           LENGTH=783
          Length = 783

 Score =  199 bits (506), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 110/371 (29%), Positives = 192/371 (51%), Gaps = 38/371 (10%)

Query: 121 LSIFAHMHRNTILPNHYTFPFLFKSLS-APCHFAQAQSVHAHVLKLGHLHDIYVHNSLLG 179
           LS+F  MH   +  + +T P +    + +      A S H  ++K G+     V+N+L+ 
Sbjct: 313 LSMFGRMHERDMKIDDFTIPSILNCFALSRTEMKIASSAHCLIVKTGYATYKLVNNALVD 372

Query: 180 VYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRV 239
           +YA    + S  + +F+ M  +DV+SWT ++ G  + G +D+AL  F  M+  G+ P+++
Sbjct: 373 MYAKRGIMDSALK-VFEGMIEKDVISWTALVTGNTHNGSYDEALKLFCNMRVGGITPDKI 431

Query: 240 TMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSV 299
              + L+A A+   +E G  +H    ++G+   + +  +L+ MY KCG +E+   +F+S+
Sbjct: 432 VTASVLSASAELTLLEFGQQVHGNYIKSGFPSSLSVNNSLVTMYTKCGSLEDANVIFNSM 491

Query: 300 KEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGR 359
           + +++ TW  +I G A     E+A R F+ M                            R
Sbjct: 492 EIRDLITWTCLIVGYAKNGLLEDAQRYFDSM----------------------------R 523

Query: 360 QIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSK 419
            +        YG  P  +HYACM+DL  RSG   +  +++  M  +P   +W ++L +S+
Sbjct: 524 TV--------YGITPGPEHYACMIDLFGRSGDFVKVEQLLHQMEVEPDATVWKAILAASR 575

Query: 420 SQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGC 479
             G++E  E  A+ L+ELEP N+  YV LSN+Y+  GR D+   VR +MK R ++K+ GC
Sbjct: 576 KHGNIENGERAAKTLMELEPNNAVPYVQLSNMYSAAGRQDEAANVRRLMKSRNISKEPGC 635

Query: 480 SSVEVEEQGHT 490
           S VE + + H+
Sbjct: 636 SWVEEKGKVHS 646



 Score =  128 bits (322), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 104/415 (25%), Positives = 187/415 (45%), Gaps = 39/415 (9%)

Query: 94  PRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFA 153
           P  +   +N+LI  +  S    + +   ++F  M  + I PN YT   + +  ++     
Sbjct: 86  PVKNTISWNALISGYCKSG---SKVEAFNLFWEMQSDGIKPNEYTLGSVLRMCTSLVLLL 142

Query: 154 QAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMT-HRDVVSWTVMIMG 212
           + + +H H +K G   D+ V N LL +YA   R+ S    LF+ M   ++ V+WT M+ G
Sbjct: 143 RGEQIHGHTIKTGFDLDVNVVNGLLAMYAQCKRI-SEAEYLFETMEGEKNNVTWTSMLTG 201

Query: 213 FRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELD 272
           +   G    A+  F  ++  G   N+ T  + L ACA   A  +G  +H  I ++G++ +
Sbjct: 202 YSQNGFAFKAIECFRDLRREGNQSNQYTFPSVLTACASVSACRVGVQVHCCIVKSGFKTN 261

Query: 273 VVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQ 332
           + + +ALIDMYAKC  +E    +   ++  +V +WN++I G        EA+ +F RM +
Sbjct: 262 IYVQSALIDMYAKCREMESARALLEGMEVDDVVSWNSMIVGCVRQGLIGEALSMFGRMHE 321

Query: 333 DGVRADEVTLLAVLS---------------------------ACNHSGLVDM--GRQIFG 363
             ++ D+ T+ ++L+                              ++ LVDM   R I  
Sbjct: 322 RDMKIDDFTIPSILNCFALSRTEMKIASSAHCLIVKTGYATYKLVNNALVDMYAKRGIMD 381

Query: 364 FLVEGKYGFI-PNVKHYACMVDLLARSGSLREAFEV---MRCMPFDPTKAMWGSLLVSSK 419
             ++   G I  +V  +  +V     +GS  EA ++   MR     P K +  S+L +S 
Sbjct: 382 SALKVFEGMIEKDVISWTALVTGNTHNGSYDEALKLFCNMRVGGITPDKIVTASVLSASA 441

Query: 420 SQGDLEFSEFVARKLVELE-PANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQL 473
               LEF + V    ++   P++ +    L  +Y + G  +D   +   M+ R L
Sbjct: 442 ELTLLEFGQQVHGNYIKSGFPSSLSVNNSLVTMYTKCGSLEDANVIFNSMEIRDL 496



 Score =  126 bits (316), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 97/367 (26%), Positives = 174/367 (47%), Gaps = 10/367 (2%)

Query: 101 FNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHA 160
           + S++  +S +     +   +  F  + R     N YTFP +  + ++         VH 
Sbjct: 195 WTSMLTGYSQNGF---AFKAIECFRDLRREGNQSNQYTFPSVLTACASVSACRVGVQVHC 251

Query: 161 HVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFD 220
            ++K G   +IYV ++L+ +YA    + S  R L + M   DVVSW  MI+G    G   
Sbjct: 252 CIVKSGFKTNIYVQSALIDMYAKCREMES-ARALLEGMEVDDVVSWNSMIVGCVRQGLIG 310

Query: 221 DALLAFEQMQYAGVAPNRVTMVNALAACADSGA-VEMGAWIHDFIRRNGWELDVVLGTAL 279
           +AL  F +M    +  +  T+ + L   A S   +++ +  H  I + G+    ++  AL
Sbjct: 311 EALSMFGRMHERDMKIDDFTIPSILNCFALSRTEMKIASSAHCLIVKTGYATYKLVNNAL 370

Query: 280 IDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADE 339
           +DMYAK G ++  ++VF  + EK+V +W A++ G     S +EA++LF  M   G+  D+
Sbjct: 371 VDMYAKRGIMDSALKVFEGMIEKDVISWTALVTGNTHNGSYDEALKLFCNMRVGGITPDK 430

Query: 340 VTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVM 399
           +   +VLSA     L++ G+Q+ G  +  K GF  ++     +V +  + GSL +A  + 
Sbjct: 431 IVTASVLSASAELTLLEFGQQVHGNYI--KSGFPSSLSVNNSLVTMYTKCGSLEDANVIF 488

Query: 400 RCMPFDPTKAMWGSLLVSSKSQGDLEFSE--FVARKLVELEPANSAYYVHLSNLYAEMGR 457
             M        W  L+V     G LE ++  F + + V        +Y  + +L+   G 
Sbjct: 489 NSMEIRDL-ITWTCLIVGYAKNGLLEDAQRYFDSMRTVYGITPGPEHYACMIDLFGRSGD 547

Query: 458 WDDVEKV 464
           +  VE++
Sbjct: 548 FVKVEQL 554



 Score =  113 bits (282), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 129/255 (50%), Gaps = 5/255 (1%)

Query: 169 HDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQ 228
            D +  N+++  Y+ S RL S   +LF     ++ +SW  +I G+  +G   +A   F +
Sbjct: 57  RDEFTWNTMIVAYSNSRRL-SDAEKLFRSNPVKNTISWNALISGYCKSGSKVEAFNLFWE 115

Query: 229 MQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGR 288
           MQ  G+ PN  T+ + L  C     +  G  IH    + G++LDV +   L+ MYA+C R
Sbjct: 116 MQSDGIKPNEYTLGSVLRMCTSLVLLLRGEQIHGHTIKTGFDLDVNVVNGLLAMYAQCKR 175

Query: 289 VEEGVRVFSSVK-EKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLS 347
           + E   +F +++ EKN  TW +++ G +      +AI  F  + ++G ++++ T  +VL+
Sbjct: 176 ISEAEYLFETMEGEKNNVTWTSMLTGYSQNGFAFKAIECFRDLRREGNQSNQYTFPSVLT 235

Query: 348 ACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPT 407
           AC       +G Q+   +V  K GF  N+   + ++D+ A+   +  A  ++  M  D  
Sbjct: 236 ACASVSACRVGVQVHCCIV--KSGFKTNIYVQSALIDMYAKCREMESARALLEGMEVDDV 293

Query: 408 KAMWGSLLVSSKSQG 422
            + W S++V    QG
Sbjct: 294 VS-WNSMIVGCVRQG 307



 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 70/153 (45%), Gaps = 2/153 (1%)

Query: 270 ELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNR 329
           E D      +I  Y+   R+ +  ++F S   KN  +WNA+I G   + S  EA  LF  
Sbjct: 56  ERDEFTWNTMIVAYSNSRRLSDAEKLFRSNPVKNTISWNALISGYCKSGSKVEAFNLFWE 115

Query: 330 MEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARS 389
           M+ DG++ +E TL +VL  C    L+  G QI G  +  K GF  +V     ++ + A+ 
Sbjct: 116 MQSDGIKPNEYTLGSVLRMCTSLVLLLRGEQIHGHTI--KTGFDLDVNVVNGLLAMYAQC 173

Query: 390 GSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQG 422
             + EA  +   M  +     W S+L      G
Sbjct: 174 KRISEAEYLFETMEGEKNNVTWTSMLTGYSQNG 206


>AT4G22760.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:11960553-11962289 FORWARD
           LENGTH=578
          Length = 578

 Score =  199 bits (505), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 101/294 (34%), Positives = 169/294 (57%), Gaps = 4/294 (1%)

Query: 192 RQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQM--QYAGVAPNRVTMVNALAACA 249
            +LF  M+ +D + +  MI  +   GK  DAL  F QM  + + + P+ +T+ + ++A +
Sbjct: 283 EELFRLMSKKDKLVYDAMIACYTQNGKPKDALKLFAQMLERNSYIQPDEITLSSVVSANS 342

Query: 250 DSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNA 309
             G    G W+  +I  +G ++D +L T+LID+Y K G   +  ++FS++ +K+  +++A
Sbjct: 343 QLGNTSFGTWVESYITEHGIKIDDLLSTSLIDLYMKGGDFAKAFKMFSNLNKKDTVSYSA 402

Query: 310 VIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGK 369
           +I G  +     EA  LF  M +  +  + VT   +LSA +HSGLV  G + F  + +  
Sbjct: 403 MIMGCGINGMATEANSLFTAMIEKKIPPNVVTFTGLLSAYSHSGLVQEGYKCFNSMKD-- 460

Query: 370 YGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEF 429
           +   P+  HY  MVD+L R+G L EA+E+++ MP  P   +WG+LL++S    ++EF E 
Sbjct: 461 HNLEPSADHYGIMVDMLGRAGRLEEAYELIKSMPMQPNAGVWGALLLASGLHNNVEFGEI 520

Query: 430 VARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVE 483
                V+LE   + Y  HL+ +Y+ +GRWDD   VR  +K+++L K LGCS VE
Sbjct: 521 ACSHCVKLETDPTGYLSHLAMIYSSVGRWDDARTVRDSIKEKKLCKTLGCSWVE 574



 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/411 (20%), Positives = 176/411 (42%), Gaps = 53/411 (12%)

Query: 99  FIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSV 158
           F +  L+R  S    H      + ++  MH + I P+ +    + ++     +    + +
Sbjct: 70  FSWGCLVRFLSQ---HRKFKETVDVYIDMHNSGIPPSSHAVTSVLRACGKMENMVDGKPI 126

Query: 159 HAHVLKLGHLHDIYVHNSLLGVYAASPRL--FSLCRQLFDEMTHRDVVSWTVMIMGFRNA 216
           HA  LK G    +YV   L+G+Y+   RL    L ++ FD++  ++ VSW  ++ G+  +
Sbjct: 127 HAQALKNGLCGCVYVQTGLVGLYS---RLGYIELAKKAFDDIAEKNTVSWNSLLHGYLES 183

Query: 217 GKFDDALLAFEQM-------------QYA--GVAPNRVTMVNALA-ACADSGAVEMGAWI 260
           G+ D+A   F+++              YA  G   N  ++ +A+      S  + +G ++
Sbjct: 184 GELDEARRVFDKIPEKDAVSWNLIISSYAKKGDMGNACSLFSAMPLKSPASWNILIGGYV 243

Query: 261 H------------DFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWN 308
           +               ++NG     V    +I  Y K G V+    +F  + +K+   ++
Sbjct: 244 NCREMKLARTYFDAMPQKNG-----VSWITMISGYTKLGDVQSAEELFRLMSKKDKLVYD 298

Query: 309 AVIKGLALAKSGEEAIRLFNRMEQDG--VRADEVTLLAVLSACNHSGLVDMGRQIFGFLV 366
           A+I         ++A++LF +M +    ++ DE+TL +V+SA +  G    G  +  ++ 
Sbjct: 299 AMIACYTQNGKPKDALKLFAQMLERNSYIQPDEITLSSVVSANSQLGNTSFGTWVESYIT 358

Query: 367 EGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKA----MWGSLLVSSKSQG 422
           E  +G   +      ++DL  + G   +AF++   +    T +    + G  +    ++ 
Sbjct: 359 E--HGIKIDDLLSTSLIDLYMKGGDFAKAFKMFSNLNKKDTVSYSAMIMGCGINGMATEA 416

Query: 423 DLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQL 473
           +  F+  + +K+    P N   +  L + Y+  G   +  K    MKD  L
Sbjct: 417 NSLFTAMIEKKI----PPNVVTFTGLLSAYSHSGLVQEGYKCFNSMKDHNL 463



 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 97/207 (46%), Gaps = 8/207 (3%)

Query: 154 QAQSVHAHVL--KLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIM 211
           QA+ VHA ++  +  HL  I VH +L      S  + +  +++       D  SW  ++ 
Sbjct: 18  QAKQVHAQLVVNRYNHLEPILVHQTLHFTKEFSRNIVTYVKRILKGFNGHDSFSWGCLVR 77

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
                 KF + +  +  M  +G+ P+   + + L AC     +  G  IH    +NG   
Sbjct: 78  FLSQHRKFKETVDVYIDMHNSGIPPSSHAVTSVLRACGKMENMVDGKPIHAQALKNGLCG 137

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRME 331
            V + T L+ +Y++ G +E   + F  + EKN  +WN+++ G   +   +EA R+F+++ 
Sbjct: 138 CVYVQTGLVGLYSRLGYIELAKKAFDDIAEKNTVSWNSLLHGYLESGELDEARRVFDKIP 197

Query: 332 QDGVRADEVTLLAVLSACNHSGLVDMG 358
           +     D V+   ++S+    G  DMG
Sbjct: 198 E----KDAVSWNLIISSYAKKG--DMG 218



 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 100/216 (46%), Gaps = 7/216 (3%)

Query: 99  FIFNSLIRAFSHSHHHHNSLTPLSIFAHM-HRNT-ILPNHYTFPFLFKSLSAPCHFAQAQ 156
            +++++I  ++ +    ++L    +FA M  RN+ I P+  T   +  + S   + +   
Sbjct: 295 LVYDAMIACYTQNGKPKDAL---KLFAQMLERNSYIQPDEITLSSVVSANSQLGNTSFGT 351

Query: 157 SVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNA 216
            V +++ + G   D  +  SL+ +Y      F+   ++F  +  +D VS++ MIMG    
Sbjct: 352 WVESYITEHGIKIDDLLSTSLIDLYMKGGD-FAKAFKMFSNLNKKDTVSYSAMIMGCGIN 410

Query: 217 GKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLG 276
           G   +A   F  M    + PN VT    L+A + SG V+ G    + ++ +  E      
Sbjct: 411 GMATEANSLFTAMIEKKIPPNVVTFTGLLSAYSHSGLVQEGYKCFNSMKDHNLEPSADHY 470

Query: 277 TALIDMYAKCGRVEEGVRVFSSVK-EKNVFTWNAVI 311
             ++DM  + GR+EE   +  S+  + N   W A++
Sbjct: 471 GIMVDMLGRAGRLEEAYELIKSMPMQPNAGVWGALL 506


>AT3G49710.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:18437845-18440010 FORWARD
           LENGTH=721
          Length = 721

 Score =  199 bits (505), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 114/394 (28%), Positives = 205/394 (52%), Gaps = 8/394 (2%)

Query: 101 FNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHA 160
           +NS+I A+     H      L+++  M       + +T   +  +L++  H    +  H 
Sbjct: 208 WNSMIVAYGQ---HKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHG 264

Query: 161 HVLKLGHLHDIYVHNSLLGVYAASPRLFSL--CRQLFDEMTHRDVVSWTVMIMGFR-NAG 217
            ++K G   + +V + L+  Y+       +    ++F E+   D+V W  MI G+  N  
Sbjct: 265 KLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISGYSMNEE 324

Query: 218 KFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDF-IRRNGWELDVVLG 276
             ++A+ +F QMQ  G  P+  + V   +AC++  +      IH   I+ +     + + 
Sbjct: 325 LSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKSHIPSNRISVN 384

Query: 277 TALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVR 336
            ALI +Y K G +++   VF  + E N  ++N +IKG A    G EA+ L+ RM   G+ 
Sbjct: 385 NALISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIA 444

Query: 337 ADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAF 396
            +++T +AVLSAC H G VD G++ F  + E  +   P  +HY+CM+DLL R+G L EA 
Sbjct: 445 PNKITFVAVLSACAHCGKVDEGQEYFNTMKE-TFKIEPEAEHYSCMIDLLGRAGKLEEAE 503

Query: 397 EVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMG 456
             +  MP+ P    W +LL + +   ++  +E  A +L+ ++P  +  YV L+N+YA+  
Sbjct: 504 RFIDAMPYKPGSVAWAALLGACRKHKNMALAERAANELMVMQPLAATPYVMLANMYADAR 563

Query: 457 RWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGHT 490
           +W+++  VR  M+ +++ K  GCS +EV+++ H 
Sbjct: 564 KWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHV 597



 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 123/249 (49%), Gaps = 8/249 (3%)

Query: 170 DIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQM 229
           +++ +N ++  YA   ++  + RQLFDE+   D VS+  +I G+ +A +   A++ F++M
Sbjct: 73  NVFSYNVIVKAYAKDSKI-HIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRM 131

Query: 230 QYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRV 289
           +  G   +  T+   +AAC D   V++   +H F    G++    +  A +  Y+K G +
Sbjct: 132 RKLGFEVDGFTLSGLIAACCDR--VDLIKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLL 189

Query: 290 EEGVRVFSSVKE-KNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSA 348
            E V VF  + E ++  +WN++I      K G +A+ L+  M   G + D  TL +VL+A
Sbjct: 190 REAVSVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNA 249

Query: 349 CNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMP--FDP 406
                 +  GRQ  G L+  K GF  N    + ++D  ++ G     ++  +       P
Sbjct: 250 LTSLDHLIGGRQFHGKLI--KAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSP 307

Query: 407 TKAMWGSLL 415
              +W +++
Sbjct: 308 DLVVWNTMI 316



 Score = 92.8 bits (229), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 145/318 (45%), Gaps = 16/318 (5%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P+P    +N+LI  ++ +     +   + +F  M +     + +T   L   ++A C  
Sbjct: 100 IPQPDTVSYNTLISGYADARE---TFAAMVLFKRMRKLGFEVDGFTLSGL---IAACCDR 153

Query: 153 AQ-AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIM 211
               + +H   +  G      V+N+ +  Y+    L       +     RD VSW  MI+
Sbjct: 154 VDLIKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDELRDEVSWNSMIV 213

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
            +    +   AL  +++M + G   +  T+ + L A      +  G   H  + + G+  
Sbjct: 214 AYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQ 273

Query: 272 DVVLGTALIDMYAKCGRVE---EGVRVFSSVKEKNVFTWNAVIKGLALAKS-GEEAIRLF 327
           +  +G+ LID Y+KCG  +   +  +VF  +   ++  WN +I G ++ +   EEA++ F
Sbjct: 274 NSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISGYSMNEELSEEAVKSF 333

Query: 328 NRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPN--VKHYACMVDL 385
            +M++ G R D+ + + V SAC++       +QI G  ++     IP+  +     ++ L
Sbjct: 334 RQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKSH---IPSNRISVNNALISL 390

Query: 386 LARSGSLREAFEVMRCMP 403
             +SG+L++A  V   MP
Sbjct: 391 YYKSGNLQDARWVFDRMP 408



 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 4/148 (2%)

Query: 270 ELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNR 329
           E +V     ++  YAK  ++    ++F  + + +  ++N +I G A A+    A+ LF R
Sbjct: 71  EPNVFSYNVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKR 130

Query: 330 MEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARS 389
           M + G   D  TL  +++AC     VD+ +Q+  F V G +    +V +    V   ++ 
Sbjct: 131 MRKLGFEVDGFTLSGLIAAC--CDRVDLIKQLHCFSVSGGFDSYSSVNN--AFVTYYSKG 186

Query: 390 GSLREAFEVMRCMPFDPTKAMWGSLLVS 417
           G LREA  V   M     +  W S++V+
Sbjct: 187 GLLREAVSVFYGMDELRDEVSWNSMIVA 214


>AT5G66500.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:26548076-26549674 REVERSE
           LENGTH=532
          Length = 532

 Score =  198 bits (504), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 121/386 (31%), Positives = 206/386 (53%), Gaps = 19/386 (4%)

Query: 101 FNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHA 160
           +N+L+  F  +     +L    +FA M+R  +  + +T   + K+ ++     Q + VHA
Sbjct: 153 WNALLSGFLRNGKGKEAL---GVFAAMYRERVEISEFTLSSVVKTCASLKILQQGKQVHA 209

Query: 161 HVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMT-HRDVVSWTVMIMGFRNAGKF 219
            V+  G   D+ V  + +  + +S  L +   ++++ +  H D V    +I G      +
Sbjct: 210 MVVVTGR--DLVVLGTAMISFYSSVGLINEAMKVYNSLNVHTDEVMLNSLISGCIRNRNY 267

Query: 220 DDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTAL 279
            +A L   + +     PN   + ++LA C+D+  + +G  IH    RNG+  D  L   L
Sbjct: 268 KEAFLLMSRQR-----PNVRVLSSSLAGCSDNSDLWIGKQIHCVALRNGFVSDSKLCNGL 322

Query: 280 IDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRM--EQDGVRA 337
           +DMY KCG++ +   +F ++  K+V +W ++I   A+   G +A+ +F  M  E  GV  
Sbjct: 323 MDMYGKCGQIVQARTIFRAIPSKSVVSWTSMIDAYAVNGDGVKALEIFREMCEEGSGVLP 382

Query: 338 DEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFE 397
           + VT L V+SAC H+GLV  G++ FG + E KY  +P  +HY C +D+L+++G   E + 
Sbjct: 383 NSVTFLVVISACAHAGLVKEGKECFGMMKE-KYRLVPGTEHYVCFIDILSKAGETEEIWR 441

Query: 398 -VMRCMPFDPTK---AMWGSLLVSSKSQGDLEFSEFVARKLV-ELEPANSAYYVHLSNLY 452
            V R M  D      A+W ++L +     DL   E+VAR+L+ E  P N++ YV +SN Y
Sbjct: 442 LVERMMENDNQSIPCAIWVAVLSACSLNMDLTRGEYVARRLMEETGPENASIYVLVSNFY 501

Query: 453 AEMGRWDDVEKVRGMMKDRQLTKDLG 478
           A MG+WD VE++RG +K++ L K  G
Sbjct: 502 AAMGKWDVVEELRGKLKNKGLVKTAG 527



 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 173/363 (47%), Gaps = 20/363 (5%)

Query: 116 NSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHN 175
           N    L++F  +HR +   + +TF  +  + S   +    + VHA ++K G         
Sbjct: 64  NPNDTLALFLQIHRASPDLSSHTFTPVLGACSLLSYPETGRQVHALMIKQGAETGTISKT 123

Query: 176 SLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVA 235
           +L+ +Y+    L    R +F+ +  +D+VSW  ++ GF   GK  +AL  F  M    V 
Sbjct: 124 ALIDMYSKYGHLVDSVR-VFESVEEKDLVSWNALLSGFLRNGKGKEALGVFAAMYRERVE 182

Query: 236 PNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRV 295
            +  T+ + +  CA    ++ G  +H  +   G +L VVLGTA+I  Y+  G + E ++V
Sbjct: 183 ISEFTLSSVVKTCASLKILQQGKQVHAMVVVTGRDL-VVLGTAMISFYSSVGLINEAMKV 241

Query: 296 FSSVKEKNVFT----WNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNH 351
           ++S+   NV T     N++I G    ++ +EA  L +R      R +   L + L+ C+ 
Sbjct: 242 YNSL---NVHTDEVMLNSLISGCIRNRNYKEAFLLMSRQ-----RPNVRVLSSSLAGCSD 293

Query: 352 SGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMW 411
           +  + +G+QI    V  + GF+ + K    ++D+  + G + +A  + R +P   +   W
Sbjct: 294 NSDLWIGKQI--HCVALRNGFVSDSKLCNGLMDMYGKCGQIVQARTIFRAIP-SKSVVSW 350

Query: 412 GSLLVSSKSQGDLEFSEFVARKLVELEPA---NSAYYVHLSNLYAEMGRWDDVEKVRGMM 468
            S++ +    GD   +  + R++ E       NS  ++ + +  A  G   + ++  GMM
Sbjct: 351 TSMIDAYAVNGDGVKALEIFREMCEEGSGVLPNSVTFLVVISACAHAGLVKEGKECFGMM 410

Query: 469 KDR 471
           K++
Sbjct: 411 KEK 413



 Score = 98.6 bits (244), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 106/222 (47%), Gaps = 3/222 (1%)

Query: 194 LFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGA 253
           LFDE+  RD+ S    +     +G  +D L  F Q+  A    +  T    L AC+    
Sbjct: 40  LFDELPQRDLSSLNSQLSSHLRSGNPNDTLALFLQIHRASPDLSSHTFTPVLGACSLLSY 99

Query: 254 VEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKG 313
            E G  +H  + + G E   +  TALIDMY+K G + + VRVF SV+EK++ +WNA++ G
Sbjct: 100 PETGRQVHALMIKQGAETGTISKTALIDMYSKYGHLVDSVRVFESVEEKDLVSWNALLSG 159

Query: 314 LALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFI 373
                 G+EA+ +F  M ++ V   E TL +V+  C    ++  G+Q+   +V       
Sbjct: 160 FLRNGKGKEALGVFAAMYRERVEISEFTLSSVVKTCASLKILQQGKQVHAMVVVTGRDL- 218

Query: 374 PNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLL 415
             V     M+   +  G + EA +V   +     + M  SL+
Sbjct: 219 --VVLGTAMISFYSSVGLINEAMKVYNSLNVHTDEVMLNSLI 258


>AT3G21470.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr3:7563503-7565074 FORWARD
           LENGTH=523
          Length = 523

 Score =  198 bits (504), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 113/296 (38%), Positives = 168/296 (56%), Gaps = 8/296 (2%)

Query: 192 RQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADS 251
           R +F  +  RD+V W  +I G+   G  DDA+ AF  MQ  G  P+ VT+ + L+ACA S
Sbjct: 228 RAIFYRVFARDLVIWNTLIAGYAQNGYSDDAIDAFFNMQGEGYEPDAVTVSSILSACAQS 287

Query: 252 GAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVI 311
           G +++G  +H  I   G EL+  +  ALIDMYAKCG +E    VF S+  ++V   N++I
Sbjct: 288 GRLDVGREVHSLINHRGIELNQFVSNALIDMYAKCGDLENATSVFESISVRSVACCNSMI 347

Query: 312 KGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYG 371
             LA+   G+EA+ +F+ ME   ++ DE+T +AVL+AC H G +  G +IF  +      
Sbjct: 348 SCLAIHGKGKEALEMFSTMESLDLKPDEITFIAVLTACVHGGFLMEGLKIFSEM--KTQD 405

Query: 372 FIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVA 431
             PNVKH+ C++ LL RSG L+EA+ +++ M   P   + G+LL + K   D E +E V 
Sbjct: 406 VKPNVKHFGCLIHLLGRSGKLKEAYRLVKEMHVKPNDTVLGALLGACKVHMDTEMAEQVM 465

Query: 432 RKLVELEPANSAYY-----VHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSV 482
            K++E   + +  Y       +SNLYA   RW   E +R  M+ R L K  G SS+
Sbjct: 466 -KIIETAGSITNSYSENHLASISNLYAHTERWQTAEALRVEMEKRGLEKSPGLSSL 520



 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 136/317 (42%), Gaps = 46/317 (14%)

Query: 158 VHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAG 217
           +H+  +K G   D+ V +SL+ +Y     + S  R++FDEM  R+V +W  MI G+ + G
Sbjct: 68  LHSESIKFGVCSDVMVGSSLISMYGKCGCVVS-ARKVFDEMPERNVATWNAMIGGYMSNG 126

Query: 218 KFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL-DVVLG 276
              DA+LA    +   V  N VT +  +        +E      +   R  +EL +V   
Sbjct: 127 ---DAVLASGLFEEISVCRNTVTWIEMIKGYGKRIEIEKA---RELFERMPFELKNVKAW 180

Query: 277 TALIDMYAKCGRVEEGVRVFSSVKEKNVFT------------------------------ 306
           + ++ +Y    ++E+  + F  + EKN F                               
Sbjct: 181 SVMLGVYVNNRKMEDARKFFEDIPEKNAFVWSLMMSGYFRIGDVHEARAIFYRVFARDLV 240

Query: 307 -WNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFL 365
            WN +I G A     ++AI  F  M+ +G   D VT+ ++LSAC  SG +D+GR++   +
Sbjct: 241 IWNTLIAGYAQNGYSDDAIDAFFNMQGEGYEPDAVTVSSILSACAQSGRLDVGREVHSLI 300

Query: 366 VEGKYGFIPNVKHYACMVDLLARSGSLREA---FEVMRCMPFDPTKAMWGSLLVSSKSQG 422
                G   N      ++D+ A+ G L  A   FE +         +M   L +  K + 
Sbjct: 301 --NHRGIELNQFVSNALIDMYAKCGDLENATSVFESISVRSVACCNSMISCLAIHGKGKE 358

Query: 423 DLEFSEFVARKLVELEP 439
            LE   F   + ++L+P
Sbjct: 359 ALEM--FSTMESLDLKP 373



 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 100/220 (45%), Gaps = 15/220 (6%)

Query: 222 ALLAFEQMQYAGVA-PNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALI 280
           AL+ +  ++  GV  P  V ++    AC     V +G  +H    + G   DV++G++LI
Sbjct: 30  ALVLYGGIRRRGVYFPGWVPLILRACACVVPRVV-LGKLLHSESIKFGVCSDVMVGSSLI 88

Query: 281 DMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEV 340
            MY KCG V    +VF  + E+NV TWNA+I G     S  +A+      E+  V  + V
Sbjct: 89  SMYGKCGCVVSARKVFDEMPERNVATWNAMIGGYM---SNGDAVLASGLFEEISVCRNTV 145

Query: 341 TLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMR 400
           T + ++        ++  R++F    E     + NVK ++ M+ +   +  + +A +   
Sbjct: 146 TWIEMIKGYGKRIEIEKARELF----ERMPFELKNVKAWSVMLGVYVNNRKMEDARKFFE 201

Query: 401 CMPFDPTKAMWGSLLVSSKSQGDLE-----FSEFVARKLV 435
            +P +    +W  ++      GD+      F    AR LV
Sbjct: 202 DIP-EKNAFVWSLMMSGYFRIGDVHEARAIFYRVFARDLV 240


>AT3G49740.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:18447788-18450001 FORWARD
           LENGTH=737
          Length = 737

 Score =  197 bits (502), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 116/385 (30%), Positives = 209/385 (54%), Gaps = 13/385 (3%)

Query: 101 FNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHA 160
           +N++I +++ +       + +S++  MH   + P+ +TF  L   L+        + V A
Sbjct: 357 WNTMISSYNQAKLGK---SAMSVYKRMHIIGVKPDEFTFGSL---LATSLDLDVLEMVQA 410

Query: 161 HVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFD 220
            ++K G    I + N+L+  Y+ + ++      LF+    ++++SW  +I GF + G   
Sbjct: 411 CIIKFGLSSKIEISNALISAYSKNGQI-EKADLLFERSLRKNLISWNAIISGFYHNGFPF 469

Query: 221 DALLAFEQMQYAGVA--PNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTA 278
           + L  F  +  + V   P+  T+   L+ C  + ++ +G+  H ++ R+G   + ++G A
Sbjct: 470 EGLERFSCLLESEVRILPDAYTLSTLLSICVSTSSLMLGSQTHAYVLRHGQFKETLIGNA 529

Query: 279 LIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDG-VRA 337
           LI+MY++CG ++  + VF+ + EK+V +WN++I   +    GE A+  +  M+ +G V  
Sbjct: 530 LINMYSQCGTIQNSLEVFNQMSEKDVVSWNSLISAYSRHGEGENAVNTYKTMQDEGKVIP 589

Query: 338 DEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFE 397
           D  T  AVLSAC+H+GLV+ G +IF  +VE  +G I NV H++C+VDLL R+G L EA  
Sbjct: 590 DAATFSAVLSACSHAGLVEEGLEIFNSMVE-FHGVIRNVDHFSCLVDLLGRAGHLDEAES 648

Query: 398 VMRC--MPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEM 455
           +++           +W +L  +  + GDL+  + VA+ L+E E  + + YV LSN+YA  
Sbjct: 649 LVKISEKTIGSRVDVWWALFSACAAHGDLKLGKMVAKLLMEKEKDDPSVYVQLSNIYAGA 708

Query: 456 GRWDDVEKVRGMMKDRQLTKDLGCS 480
           G W + E+ R  +      K  GCS
Sbjct: 709 GMWKEAEETRRAINMIGAMKQRGCS 733



 Score = 99.8 bits (247), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 149/308 (48%), Gaps = 24/308 (7%)

Query: 94  PRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFA 153
            R  V I+N++I     S +H    T + +F  MH+  +  +     F F ++ + C + 
Sbjct: 151 ERDDVAIWNAMITGCKESGYHE---TSVELFREMHKLGVRHD----KFGFATILSMCDYG 203

Query: 154 Q---AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDE--MTHRDVVSWTV 208
                + VH+ V+K G      V N+L+ +Y     +   C  +F+E  +  RD V++ V
Sbjct: 204 SLDFGKQVHSLVIKAGFFIASSVVNALITMYFNCQVVVDACL-VFEETDVAVRDQVTFNV 262

Query: 209 MIMGFRNAG-KFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRN 267
           +I G   AG K D++LL F +M  A + P  +T V+ + +C+      MG  +H    + 
Sbjct: 263 VIDGL--AGFKRDESLLVFRKMLEASLRPTDLTFVSVMGSCS---CAAMGHQVHGLAIKT 317

Query: 268 GWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLF 327
           G+E   ++  A + MY+         +VF S++EK++ TWN +I     AK G+ A+ ++
Sbjct: 318 GYEKYTLVSNATMTMYSSFEDFGAAHKVFESLEEKDLVTWNTMISSYNQAKLGKSAMSVY 377

Query: 328 NRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLA 387
            RM   GV+ DE T  ++L+      +++M +         K+G    ++    ++   +
Sbjct: 378 KRMHIIGVKPDEFTFGSLLATSLDLDVLEMVQACI-----IKFGLSSKIEISNALISAYS 432

Query: 388 RSGSLREA 395
           ++G + +A
Sbjct: 433 KNGQIEKA 440



 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 159/364 (43%), Gaps = 58/364 (15%)

Query: 101 FNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTIL-PNHYTFPFLFKSLSAPCHFAQAQSVH 159
            N  +   + S  + N+L    +FA +HR T L P+ Y+      +            VH
Sbjct: 24  LNRRLTGLTRSGENRNAL---KLFADVHRCTTLRPDQYSVSLAITTARHLRDTIFGGQVH 80

Query: 160 AHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTV----------- 208
            + ++ G L   +V N+LL +Y     L SL ++ FDE+   DV SWT            
Sbjct: 81  CYAIRSGLLCHSHVSNTLLSLYERLGNLASL-KKKFDEIDEPDVYSWTTLLSASFKLGDI 139

Query: 209 ---------------------MIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAA 247
                                MI G + +G  + ++  F +M   GV  ++      L+ 
Sbjct: 140 EYAFEVFDKMPERDDVAIWNAMITGCKESGYHETSVELFREMHKLGVRHDKFGFATILSM 199

Query: 248 CADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVF--SSVKEKNVF 305
           C D G+++ G  +H  + + G+ +   +  ALI MY  C  V +   VF  + V  ++  
Sbjct: 200 C-DYGSLDFGKQVHSLVIKAGFFIASSVVNALITMYFNCQVVVDACLVFEETDVAVRDQV 258

Query: 306 TWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFL 365
           T+N VI GLA  K  +E++ +F +M +  +R  ++T ++V+ +C+ +    MG Q+ G  
Sbjct: 259 TFNVVIDGLAGFKR-DESLLVFRKMLEASLRPTDLTFVSVMGSCSCAA---MGHQVHGLA 314

Query: 366 VEG---KYGFIPN--VKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKS 420
           ++    KY  + N  +  Y+   D     G+  + FE +     +     W + ++SS +
Sbjct: 315 IKTGYEKYTLVSNATMTMYSSFEDF----GAAHKVFESLE----EKDLVTWNT-MISSYN 365

Query: 421 QGDL 424
           Q  L
Sbjct: 366 QAKL 369


>AT5G09950.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:3102877-3105864 REVERSE
           LENGTH=995
          Length = 995

 Score =  197 bits (502), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 134/444 (30%), Positives = 220/444 (49%), Gaps = 11/444 (2%)

Query: 51  QQIQAQLILHNLQSNPTIAHHFITVCQSHXXXXXXXXXXXXXVPRPHVFIFNSLIRAFSH 110
           QQI  + +   +  N ++++  +T+  +              +P      +NS+I A + 
Sbjct: 435 QQIHGESLKLGIDLNVSVSNALMTL-YAETGYLNECRKIFSSMPEHDQVSWNSIIGALAR 493

Query: 111 SHHHHNSLTPLSI-FAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLH 169
           S     SL    + F +  R     N  TF  +  ++S+       + +H   LK     
Sbjct: 494 SER---SLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIAD 550

Query: 170 DIYVHNSLLGVYAASPRLFSLCRQLFDEMTHR-DVVSWTVMIMGFRNAGKFDDALLAFEQ 228
           +    N+L+  Y     +   C ++F  M  R D V+W  MI G+ +      AL     
Sbjct: 551 EATTENALIACYGKCGEMDG-CEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWF 609

Query: 229 MQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGR 288
           M   G   +       L+A A    +E G  +H    R   E DVV+G+AL+DMY+KCGR
Sbjct: 610 MLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGR 669

Query: 289 VEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDG-VRADEVTLLAVLS 347
           ++  +R F+++  +N ++WN++I G A    GEEA++LF  M+ DG    D VT + VLS
Sbjct: 670 LDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLS 729

Query: 348 ACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPT 407
           AC+H+GL++ G + F  + +  YG  P ++H++CM D+L R+G L +  + +  MP  P 
Sbjct: 730 ACSHAGLLEEGFKHFESMSD-SYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPN 788

Query: 408 KAMWGSLL-VSSKSQG-DLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVR 465
             +W ++L    ++ G   E  +  A  L +LEP N+  YV L N+YA  GRW+D+ K R
Sbjct: 789 VLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKAR 848

Query: 466 GMMKDRQLTKDLGCSSVEVEEQGH 489
             MKD  + K+ G S V +++  H
Sbjct: 849 KKMKDADVKKEAGYSWVTMKDGVH 872



 Score =  106 bits (264), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/257 (30%), Positives = 129/257 (50%), Gaps = 8/257 (3%)

Query: 151 HFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMI 210
           H   A+  H+ + K     D+Y+ N+L+  Y  +    S  R++FDEM  R+ VSW  ++
Sbjct: 16  HRGAARFFHSRLYKNRLDKDVYLCNNLINAYLETGDSVS-ARKVFDEMPLRNCVSWACIV 74

Query: 211 MGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEM--GAWIHDFIRRNG 268
            G+   G+  +AL+    M   G+  N+   V+ L AC + G+V +  G  IH  + +  
Sbjct: 75  SGYSRNGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLS 134

Query: 269 WELDVVLGTALIDMYAKC-GRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLF 327
           + +D V+   LI MY KC G V   +  F  ++ KN  +WN++I   + A     A R+F
Sbjct: 135 YAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIF 194

Query: 328 NRMEQDGVRADEVTLLA-VLSACNHSGL-VDMGRQIFGFLVEGKYGFIPNVKHYACMVDL 385
           + M+ DG R  E T  + V +AC+ +   V +  QI   +   K G + ++   + +V  
Sbjct: 195 SSMQYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTI--QKSGLLTDLFVGSGLVSA 252

Query: 386 LARSGSLREAFEVMRCM 402
            A+SGSL  A +V   M
Sbjct: 253 FAKSGSLSYARKVFNQM 269



 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 124/226 (54%), Gaps = 5/226 (2%)

Query: 145 SLSAPCHFAQAQSVHAHVLKLGHLHD--IYVHNSLLGVYAASPRLFSLCRQLFDEMTHRD 202
           SL+      + + VH HV+  G L D  + + N L+ +YA    +    R++F  MT +D
Sbjct: 322 SLAEEVGLKKGREVHGHVITTG-LVDFMVGIGNGLVNMYAKCGSIAD-ARRVFYFMTDKD 379

Query: 203 VVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHD 262
            VSW  MI G    G F +A+  ++ M+   + P   T++++L++CA     ++G  IH 
Sbjct: 380 SVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHG 439

Query: 263 FIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALA-KSGE 321
              + G +L+V +  AL+ +YA+ G + E  ++FSS+ E +  +WN++I  LA + +S  
Sbjct: 440 ESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLP 499

Query: 322 EAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVE 367
           EA+  F   ++ G + + +T  +VLSA +     ++G+QI G  ++
Sbjct: 500 EAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALK 545



 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 148/342 (43%), Gaps = 21/342 (6%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLS--APC 150
           +P  +   +  ++  +S +  H  +L  L     M +  I  N Y F  + ++       
Sbjct: 62  MPLRNCVSWACIVSGYSRNGEHKEALVFLR---DMVKEGIFSNQYAFVSVLRACQEIGSV 118

Query: 151 HFAQAQSVHAHVLKLGHLHDIYVHNSLLGVY--AASPRLFSLCRQLFDEMTHRDVVSWTV 208
                + +H  + KL +  D  V N L+ +Y        ++LC   F ++  ++ VSW  
Sbjct: 119 GILFGRQIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGYALC--AFGDIEVKNSVSWNS 176

Query: 209 MIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALA-ACA-DSGAVEMGAWIHDFIRR 266
           +I  +  AG    A   F  MQY G  P   T  + +  AC+     V +   I   I++
Sbjct: 177 IISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQK 236

Query: 267 NGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRL 326
           +G   D+ +G+ L+  +AK G +    +VF+ ++ +N  T N ++ GL   K GEEA +L
Sbjct: 237 SGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKL 296

Query: 327 FNRMEQ--DGVRADEVTLLAVL---SACNHSGLVDMGRQIFGFLV-EGKYGFIPNVKHYA 380
           F  M    D      V LL+     S     GL   GR++ G ++  G   F+  + +  
Sbjct: 297 FMDMNSMIDVSPESYVILLSSFPEYSLAEEVGL-KKGREVHGHVITTGLVDFMVGIGN-- 353

Query: 381 CMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQG 422
            +V++ A+ GS+ +A  V   M  D     W S++      G
Sbjct: 354 GLVNMYAKCGSIADARRVFYFMT-DKDSVSWNSMITGLDQNG 394


>AT5G50390.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr5:20520789-20522980 REVERSE
           LENGTH=701
          Length = 701

 Score =  197 bits (502), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 121/398 (30%), Positives = 201/398 (50%), Gaps = 5/398 (1%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P  +++ + S+I  F +     N +    +F  M         +TF  + ++ +     
Sbjct: 184 IPERNLYSYYSIISGFVN---FGNYVEAFELFKMMWEELSDCETHTFAVMLRASAGLGSI 240

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMG 212
              + +H   LKLG + + +V   L+ +Y+    +    R  F+ M  +  V+W  +I G
Sbjct: 241 YVGKQLHVCALKLGVVDNTFVSCGLIDMYSKCGDIED-ARCAFECMPEKTTVAWNNVIAG 299

Query: 213 FRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELD 272
           +   G  ++AL     M+ +GV+ ++ T+   +        +E+    H  + RNG+E +
Sbjct: 300 YALHGYSEEALCLLYDMRDSGVSIDQFTLSIMIRISTKLAKLELTKQAHASLIRNGFESE 359

Query: 273 VVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQ 332
           +V  TAL+D Y+K GRV+    VF  +  KN+ +WNA++ G A    G +A++LF +M  
Sbjct: 360 IVANTALVDFYSKWGRVDTARYVFDKLPRKNIISWNALMGGYANHGRGTDAVKLFEKMIA 419

Query: 333 DGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSL 392
             V  + VT LAVLSAC +SGL + G +IF  + E  +G  P   HYACM++LL R G L
Sbjct: 420 ANVAPNHVTFLAVLSACAYSGLSEQGWEIFLSMSE-VHGIKPRAMHYACMIELLGRDGLL 478

Query: 393 REAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLY 452
            EA   +R  P   T  MW +LL + + Q +LE    VA KL  + P     YV + N+Y
Sbjct: 479 DEAIAFIRRAPLKTTVNMWAALLNACRMQENLELGRVVAEKLYGMGPEKLGNYVVMYNMY 538

Query: 453 AEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGHT 490
             MG+  +   V   ++ + L+    C+ VEV +Q H+
Sbjct: 539 NSMGKTAEAAGVLETLESKGLSMMPACTWVEVGDQTHS 576



 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 113/248 (45%), Gaps = 3/248 (1%)

Query: 156 QSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRN 215
           + V+  ++  G   + Y+ N +L ++     +    R+LFDE+  R++ S+  +I GF N
Sbjct: 143 KRVYGFMMSNGFEPEQYMMNRILLMHVKCGMIID-ARRLFDEIPERNLYSYYSIISGFVN 201

Query: 216 AGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVL 275
            G + +A   F+ M          T    L A A  G++ +G  +H    + G   +  +
Sbjct: 202 FGNYVEAFELFKMMWEELSDCETHTFAVMLRASAGLGSIYVGKQLHVCALKLGVVDNTFV 261

Query: 276 GTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGV 335
              LIDMY+KCG +E+    F  + EK    WN VI G AL    EEA+ L   M   GV
Sbjct: 262 SCGLIDMYSKCGDIEDARCAFECMPEKTTVAWNNVIAGYALHGYSEEALCLLYDMRDSGV 321

Query: 336 RADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREA 395
             D+ TL  ++        +++ +Q    L+  + GF   +     +VD  ++ G +  A
Sbjct: 322 SIDQFTLSIMIRISTKLAKLELTKQAHASLI--RNGFESEIVANTALVDFYSKWGRVDTA 379

Query: 396 FEVMRCMP 403
             V   +P
Sbjct: 380 RYVFDKLP 387



 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 95/199 (47%), Gaps = 4/199 (2%)

Query: 218 KFDDALLAFEQMQYAGVAPNRVTMVNALA-ACADSGAVEMGAWIHDFIRRNGWELDVVLG 276
           +F +A   FE ++        V+  +AL  AC    ++     ++ F+  NG+E +  + 
Sbjct: 102 RFREAFELFEILEIRCSFKVGVSTYDALVEACIRLKSIRCVKRVYGFMMSNGFEPEQYMM 161

Query: 277 TALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVR 336
             ++ M+ KCG + +  R+F  + E+N++++ ++I G     +  EA  LF  M ++   
Sbjct: 162 NRILLMHVKCGMIIDARRLFDEIPERNLYSYYSIISGFVNFGNYVEAFELFKMMWEELSD 221

Query: 337 ADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAF 396
            +  T   +L A    G + +G+Q+   +   K G + N      ++D+ ++ G + +A 
Sbjct: 222 CETHTFAVMLRASAGLGSIYVGKQL--HVCALKLGVVDNTFVSCGLIDMYSKCGDIEDAR 279

Query: 397 EVMRCMPFDPTKAMWGSLL 415
               CMP + T   W +++
Sbjct: 280 CAFECMP-EKTTVAWNNVI 297


>AT1G71490.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:26933326-26935371 REVERSE
           LENGTH=681
          Length = 681

 Score =  197 bits (500), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 105/334 (31%), Positives = 188/334 (56%), Gaps = 12/334 (3%)

Query: 163 LKLG-HLHDIYVHNSLLGVYAASPRL---FSLCRQL------FDEMTHRDVVSWTVMIMG 212
           ++LG  +H + +H+S  G+      L   +S C+ L      F +     + +W  +I G
Sbjct: 296 IRLGKEIHGLAIHSSYDGIDNVRNTLITMYSKCKDLRHALIVFRQTEENSLCTWNSIISG 355

Query: 213 FRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFI-RRNGWEL 271
           +    K ++A     +M  AG  PN +T+ + L  CA    ++ G   H +I RR  ++ 
Sbjct: 356 YAQLNKSEEASHLLREMLVAGFQPNSITLASILPLCARIANLQHGKEFHCYILRRKCFKD 415

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRME 331
             +L  +L+D+YAK G++    +V   + +++  T+ ++I G      G  A+ LF  M 
Sbjct: 416 YTMLWNSLVDVYAKSGKIVAAKQVSDLMSKRDEVTYTSLIDGYGNQGEGGVALALFKEMT 475

Query: 332 QDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGS 391
           + G++ D VT++AVLSAC+HS LV  G ++F   ++ +YG  P ++H++CMVDL  R+G 
Sbjct: 476 RSGIKPDHVTVVAVLSACSHSKLVHEGERLF-MKMQCEYGIRPCLQHFSCMVDLYGRAGF 534

Query: 392 LREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNL 451
           L +A +++  MP+ P+ A W +LL +    G+ +  ++ A KL+E++P N  YYV ++N+
Sbjct: 535 LAKAKDIIHNMPYKPSGATWATLLNACHIHGNTQIGKWAAEKLLEMKPENPGYYVLIANM 594

Query: 452 YAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVE 485
           YA  G W  + +VR +M+D  + KD GC+ ++ +
Sbjct: 595 YAAAGSWSKLAEVRTIMRDLGVKKDPGCAWIDTD 628



 Score =  112 bits (280), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 151/339 (44%), Gaps = 40/339 (11%)

Query: 121 LSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGV 180
           ++ +  M    I P+ +T+P + K+       A  + VH  +    +   +YV N+L+ +
Sbjct: 129 IAAYKRMVSKGIRPDAFTYPSVLKACGETLDVAFGRVVHGSIEVSSYKSSLYVCNALISM 188

Query: 181 YAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVT 240
           Y    R   + R+LFD M  RD VSW  +I  + + G + +A   F++M ++GV  + +T
Sbjct: 189 YK-RFRNMGIARRLFDRMFERDAVSWNAVINCYASEGMWSEAFELFDKMWFSGVEVSVIT 247

Query: 241 -----------------------------------MVNALAACADSGAVEMGAWIHDFIR 265
                                              M+  L AC+  GA+ +G  IH    
Sbjct: 248 WNIISGGCLQTGNYVGALGLISRMRNFPTSLDPVAMIIGLKACSLIGAIRLGKEIHGLAI 307

Query: 266 RNGWE-LDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAI 324
            + ++ +D V  T LI MY+KC  +   + VF   +E ++ TWN++I G A     EEA 
Sbjct: 308 HSSYDGIDNVRNT-LITMYSKCKDLRHALIVFRQTEENSLCTWNSIISGYAQLNKSEEAS 366

Query: 325 RLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVD 384
            L   M   G + + +TL ++L  C     +  G++   +++  K  F      +  +VD
Sbjct: 367 HLLREMLVAGFQPNSITLASILPLCARIANLQHGKEFHCYILRRKC-FKDYTMLWNSLVD 425

Query: 385 LLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGD 423
           + A+SG +  A +V   M     +  + SL+    +QG+
Sbjct: 426 VYAKSGKIVAAKQVSDLMS-KRDEVTYTSLIDGYGNQGE 463



 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 83/344 (24%), Positives = 142/344 (41%), Gaps = 53/344 (15%)

Query: 100 IFNSLIRAFSHSHHHHN----SLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQA 155
           +F SL    SH H H      SL  L   + +  + +L  H     L   +      A  
Sbjct: 6   LFKSLGHLASHGHLHDAFKTFSLLRLQSSSAVSDDLVL--HSAASLLSACVDVRAFLAGV 63

Query: 156 QSVHAHVLKLG-HLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVV---SWTVMIM 211
           Q VHAH +  G   H + V   L+  Y+A    F+L  +    + + D++    W V+I 
Sbjct: 64  Q-VHAHCISSGVEYHSVLVPK-LVTFYSA----FNLHNEAQSIIENSDILHPLPWNVLIA 117

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
            +     F++ + A+++M   G+ P+  T  + L AC ++  V  G  +H  I  + ++ 
Sbjct: 118 SYAKNELFEEVIAAYKRMVSKGIRPDAFTYPSVLKACGETLDVAFGRVVHGSIEVSSYKS 177

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRME 331
            + +  ALI MY +   +    R+F  + E++  +WNAVI   A      EA  LF++M 
Sbjct: 178 SLYVCNALISMYKRFRNMGIARRLFDRMFERDAVSWNAVINCYASEGMWSEAFELFDKMW 237

Query: 332 QDGVRA-----------------------------------DEVTLLAVLSACNHSGLVD 356
             GV                                     D V ++  L AC+  G + 
Sbjct: 238 FSGVEVSVITWNIISGGCLQTGNYVGALGLISRMRNFPTSLDPVAMIIGLKACSLIGAIR 297

Query: 357 MGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMR 400
           +G++I G  +   Y  I NV++   ++ + ++   LR A  V R
Sbjct: 298 LGKEIHGLAIHSSYDGIDNVRN--TLITMYSKCKDLRHALIVFR 339



 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 82/216 (37%), Gaps = 18/216 (8%)

Query: 217 GKFDDALLAFE--QMQYAGVAPNRVTMVNA---LAACADSGAVEMGAWIHDFIRRNGWEL 271
           G   DA   F   ++Q +    + + + +A   L+AC D  A   G  +H     +G E 
Sbjct: 17  GHLHDAFKTFSLLRLQSSSAVSDDLVLHSAASLLSACVDVRAFLAGVQVHAHCISSGVEY 76

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRME 331
             VL   L+  Y+      E   +  +    +   WN +I   A  +  EE I  + RM 
Sbjct: 77  HSVLVPKLVTFYSAFNLHNEAQSIIENSDILHPLPWNVLIASYAKNELFEEVIAAYKRMV 136

Query: 332 QDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYAC-----MVDLL 386
             G+R D  T  +VL AC  +  V  GR + G +    Y        Y C     M    
Sbjct: 137 SKGIRPDAFTYPSVLKACGETLDVAFGRVVHGSIEVSSY----KSSLYVCNALISMYKRF 192

Query: 387 ARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQG 422
              G  R  F+ M    F+     W +++    S+G
Sbjct: 193 RNMGIARRLFDRM----FERDAVSWNAVINCYASEG 224


>AT5G08490.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:2745208-2747757 REVERSE
           LENGTH=849
          Length = 849

 Score =  195 bits (495), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 105/342 (30%), Positives = 187/342 (54%), Gaps = 3/342 (0%)

Query: 146 LSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVS 205
           L A       +  H   L L     +  +NSLL  Y  S       + LF EM+  D+ +
Sbjct: 477 LDAYAKCGNVEYAHKIFLGLSERRTLVSYNSLLSGYVNSGS-HDDAQMLFTEMSTTDLTT 535

Query: 206 WTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIR 265
           W++M+  +  +   ++A+  F ++Q  G+ PN VT++N L  CA   ++ +    H +I 
Sbjct: 536 WSLMVRIYAESCCPNEAIGVFREIQARGMRPNTVTIMNLLPVCAQLASLHLVRQCHGYII 595

Query: 266 RNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIR 325
           R G   D+ L   L+D+YAKCG ++    VF S   +++  + A++ G A+   G+EA+ 
Sbjct: 596 RGGLG-DIRLKGTLLDVYAKCGSLKHAYSVFQSDARRDLVMFTAMVAGYAVHGRGKEALM 654

Query: 326 LFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDL 385
           +++ M +  ++ D V +  +L+AC H+GL+  G QI+   +   +G  P ++ YAC VDL
Sbjct: 655 IYSHMTESNIKPDHVFITTMLTACCHAGLIQDGLQIYDS-IRTVHGMKPTMEQYACAVDL 713

Query: 386 LARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYY 445
           +AR G L +A+  +  MP +P   +WG+LL +  +   ++    VA  L++ E  ++  +
Sbjct: 714 IARGGRLDDAYSFVTQMPVEPNANIWGTLLRACTTYNRMDLGHSVANHLLQAESDDTGNH 773

Query: 446 VHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQ 487
           V +SN+YA   +W+ V ++R +MK +++ K  GCS +EV+ Q
Sbjct: 774 VLISNMYAADAKWEGVMELRNLMKKKEMKKPAGCSWLEVDGQ 815



 Score =  112 bits (281), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 125/271 (46%), Gaps = 20/271 (7%)

Query: 154 QAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGF 213
             +S+H++++K G   D  V N+L+ +YA    +F      FD +  +DVVSW  +I GF
Sbjct: 140 NGKSMHSYIIKAGLEKDTLVGNALVSMYAKFGFIFPDAYTAFDGIADKDVVSWNAIIAGF 199

Query: 214 RNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSG---AVEMGAWIHDFIRRNGW- 269
                  DA  +F  M      PN  T+ N L  CA      A   G  IH ++ +  W 
Sbjct: 200 SENNMMADAFRSFCLMLKEPTEPNYATIANVLPVCASMDKNIACRSGRQIHSYVVQRSWL 259

Query: 270 ELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNR 329
           +  V +  +L+  Y + GR+EE   +F+ +  K++ +WN VI G A      +A +LF+ 
Sbjct: 260 QTHVFVCNSLVSFYLRVGRIEEAASLFTRMGSKDLVSWNVVIAGYASNCEWFKAFQLFHN 319

Query: 330 MEQDG-VRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLAR 388
           +   G V  D VT++++L  C     +  G++I  +++   Y  + +      ++   AR
Sbjct: 320 LVHKGDVSPDSVTIISILPVCAQLTDLASGKEIHSYILRHSY-LLEDTSVGNALISFYAR 378

Query: 389 SGSLREAFEVMRCMPFDPTKAMWGSLLVSSK 419
            G              D + A W   L+S+K
Sbjct: 379 FG--------------DTSAAYWAFSLMSTK 395



 Score = 99.0 bits (245), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 128/271 (47%), Gaps = 18/271 (6%)

Query: 135 NHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQL 194
           +H  F  + K+ ++       +++H  V KLGH+    V  S+L +YA   R+   C+++
Sbjct: 20  DHRVFLDVVKACASVSDLTSGRALHGCVFKLGHIACSEVSKSVLNMYAKCRRMDD-CQKM 78

Query: 195 FDEMTHRDVVSWTVMIMGFR-NAGKFDDALLAFEQMQYAG-VAPNRVTMVNALAACADSG 252
           F +M   D V W +++ G   + G+  + +  F+ M +A    P+ VT    L  C   G
Sbjct: 79  FRQMDSLDPVVWNIVLTGLSVSCGR--ETMRFFKAMHFADEPKPSSVTFAIVLPLCVRLG 136

Query: 253 AVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRV-EEGVRVFSSVKEKNVFTWNAVI 311
               G  +H +I + G E D ++G AL+ MYAK G +  +    F  + +K+V +WNA+I
Sbjct: 137 DSYNGKSMHSYIIKAGLEKDTLVGNALVSMYAKFGFIFPDAYTAFDGIADKDVVSWNAII 196

Query: 312 KGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSAC---NHSGLVDMGRQIFGFLVEG 368
            G +      +A R F  M ++    +  T+  VL  C   + +     GRQI  ++V+ 
Sbjct: 197 AGFSENNMMADAFRSFCLMLKEPTEPNYATIANVLPVCASMDKNIACRSGRQIHSYVVQR 256

Query: 369 KY----GFIPNVKHYACMVDLLARSGSLREA 395
            +     F+ N      +V    R G + EA
Sbjct: 257 SWLQTHVFVCN-----SLVSFYLRVGRIEEA 282



 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 169/366 (46%), Gaps = 18/366 (4%)

Query: 98  VFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLF---KSLSAPCHFAQ 154
           V  +N++I  FS ++   ++      F  M +    PN+ T   +     S+        
Sbjct: 189 VVSWNAIIAGFSENNMMADAFRS---FCLMLKEPTEPNYATIANVLPVCASMDKNIACRS 245

Query: 155 AQSVHAHVLKLGHLHD-IYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGF 213
            + +H++V++   L   ++V NSL+  Y    R+      LF  M  +D+VSW V+I G+
Sbjct: 246 GRQIHSYVVQRSWLQTHVFVCNSLVSFYLRVGRI-EEAASLFTRMGSKDLVSWNVVIAGY 304

Query: 214 RNAGKFDDALLAFEQMQYAG-VAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL- 271
            +  ++  A   F  + + G V+P+ VT+++ L  CA    +  G  IH +I R+ + L 
Sbjct: 305 ASNCEWFKAFQLFHNLVHKGDVSPDSVTIISILPVCAQLTDLASGKEIHSYILRHSYLLE 364

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRME 331
           D  +G ALI  YA+ G        FS +  K++ +WNA++   A +    + + L + + 
Sbjct: 365 DTSVGNALISFYARFGDTSAAYWAFSLMSTKDIISWNAILDAFADSPKQFQFLNLLHHLL 424

Query: 332 QDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFI---PNVKHYACMVDLLAR 388
            + +  D VT+L++L  C +   +   +++ G+ V  K G +      K    ++D  A+
Sbjct: 425 NEAITLDSVTILSLLKFCINVQGIGKVKEVHGYSV--KAGLLHDEEEPKLGNALLDAYAK 482

Query: 389 SGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHL 448
            G++  A ++   +    T   + SLL    + G  + ++ +     E+   +   +  +
Sbjct: 483 CGNVEYAHKIFLGLSERRTLVSYNSLLSGYVNSGSHDDAQML---FTEMSTTDLTTWSLM 539

Query: 449 SNLYAE 454
             +YAE
Sbjct: 540 VRIYAE 545



 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 65/138 (47%), Gaps = 2/138 (1%)

Query: 232 AGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEE 291
           +G   +    ++ + ACA    +  G  +H  + + G      +  ++++MYAKC R+++
Sbjct: 15  SGFGTDHRVFLDVVKACASVSDLTSGRALHGCVFKLGHIACSEVSKSVLNMYAKCRRMDD 74

Query: 292 GVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRME-QDGVRADEVTLLAVLSACN 350
             ++F  +   +   WN V+ GL+++  G E +R F  M   D  +   VT   VL  C 
Sbjct: 75  CQKMFRQMDSLDPVVWNIVLTGLSVS-CGRETMRFFKAMHFADEPKPSSVTFAIVLPLCV 133

Query: 351 HSGLVDMGRQIFGFLVEG 368
             G    G+ +  ++++ 
Sbjct: 134 RLGDSYNGKSMHSYIIKA 151


>AT1G64310.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:23866053-23867711 FORWARD
           LENGTH=552
          Length = 552

 Score =  194 bits (492), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 116/374 (31%), Positives = 195/374 (52%), Gaps = 6/374 (1%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P P + ++N +I  +         +   ++  H       PN YT   L   L  P   
Sbjct: 167 IPDPDLALWNVMILGYGCCGFWDKGINLFNLMQHRGHQ---PNCYTMVALTSGLIDPSLL 223

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMG 212
             A SVHA  LK+      YV  +L+ +Y+    + S C  +F+ ++  D+V+ + +I G
Sbjct: 224 LVAWSVHAFCLKINLDSHSYVGCALVNMYSRCMCIASAC-SVFNSISEPDLVACSSLITG 282

Query: 213 FRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELD 272
           +   G   +AL  F +++ +G  P+ V +   L +CA+      G  +H ++ R G ELD
Sbjct: 283 YSRCGNHKEALHLFAELRMSGKKPDCVLVAIVLGSCAELSDSVSGKEVHSYVIRLGLELD 342

Query: 273 VVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQ 332
           + + +ALIDMY+KCG ++  + +F+ + EKN+ ++N++I GL L      A   F  + +
Sbjct: 343 IKVCSALIDMYSKCGLLKCAMSLFAGIPEKNIVSFNSLILGLGLHGFASTAFEKFTEILE 402

Query: 333 DGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSL 392
            G+  DE+T  A+L  C HSGL++ G++IF  + + ++G  P  +HY  MV L+  +G L
Sbjct: 403 MGLIPDEITFSALLCTCCHSGLLNKGQEIFERM-KSEFGIEPQTEHYVYMVKLMGMAGKL 461

Query: 393 REAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKL-VELEPANSAYYVHLSNL 451
            EAFE +  +       + G+LL   +   +   +E VA  +    E   S Y V LSN+
Sbjct: 462 EEAFEFVMSLQKPIDSGILGALLSCCEVHENTHLAEVVAENIHKNGEERRSVYKVMLSNV 521

Query: 452 YAEMGRWDDVEKVR 465
           YA  GRWD+VE++R
Sbjct: 522 YARYGRWDEVERLR 535



 Score =  119 bits (298), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 152/310 (49%), Gaps = 6/310 (1%)

Query: 94  PRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFA 153
           P   VF++NS+IRA++ +H      T LS+F+ + R+   P+++T+  L +  S      
Sbjct: 67  PERSVFLWNSIIRAYAKAHQFT---TVLSLFSQILRSDTRPDNFTYACLARGFSESFDTK 123

Query: 154 QAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGF 213
             + +H   +  G   D    ++++  Y+ +  L     +LF  +   D+  W VMI+G+
Sbjct: 124 GLRCIHGIAIVSGLGFDQICGSAIVKAYSKAG-LIVEASKLFCSIPDPDLALWNVMILGY 182

Query: 214 RNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDV 273
              G +D  +  F  MQ+ G  PN  TMV   +   D   + +   +H F  +   +   
Sbjct: 183 GCCGFWDKGINLFNLMQHRGHQPNCYTMVALTSGLIDPSLLLVAWSVHAFCLKINLDSHS 242

Query: 274 VLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQD 333
            +G AL++MY++C  +     VF+S+ E ++   +++I G +   + +EA+ LF  +   
Sbjct: 243 YVGCALVNMYSRCMCIASACSVFNSISEPDLVACSSLITGYSRCGNHKEALHLFAELRMS 302

Query: 334 GVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLR 393
           G + D V +  VL +C        G+++  +++  + G   ++K  + ++D+ ++ G L+
Sbjct: 303 GKKPDCVLVAIVLGSCAELSDSVSGKEVHSYVI--RLGLELDIKVCSALIDMYSKCGLLK 360

Query: 394 EAFEVMRCMP 403
            A  +   +P
Sbjct: 361 CAMSLFAGIP 370



 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 91/203 (44%), Gaps = 6/203 (2%)

Query: 154 QAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGF 213
             Q +H+ V K     D Y    L   YA +  L S  R+LFD    R V  W  +I  +
Sbjct: 23  NTQKLHSFVTKSKLARDPYFATQLARFYALNDDLIS-ARKLFDVFPERSVFLWNSIIRAY 81

Query: 214 RNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDV 273
             A +F   L  F Q+  +   P+  T        ++S   +    IH     +G   D 
Sbjct: 82  AKAHQFTTVLSLFSQILRSDTRPDNFTYACLARGFSESFDTKGLRCIHGIAIVSGLGFDQ 141

Query: 274 VLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQD 333
           + G+A++  Y+K G + E  ++F S+ + ++  WN +I G       ++ I LFN M+  
Sbjct: 142 ICGSAIVKAYSKAGLIVEASKLFCSIPDPDLALWNVMILGYGCCGFWDKGINLFNLMQHR 201

Query: 334 GVRADEVTLLAVLSACNHSGLVD 356
           G + +  T++A+      SGL+D
Sbjct: 202 GHQPNCYTMVAL-----TSGLID 219



 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 70/157 (44%), Gaps = 3/157 (1%)

Query: 260 IHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKS 319
           +H F+ ++    D    T L   YA    +    ++F    E++VF WN++I+  A A  
Sbjct: 27  LHSFVTKSKLARDPYFATQLARFYALNDDLISARKLFDVFPERSVFLWNSIIRAYAKAHQ 86

Query: 320 GEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHY 379
               + LF+++ +   R D  T   +    + S      R I G  +    GF  +    
Sbjct: 87  FTTVLSLFSQILRSDTRPDNFTYACLARGFSESFDTKGLRCIHGIAIVSGLGF--DQICG 144

Query: 380 ACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLV 416
           + +V   +++G + EA ++   +P DP  A+W  +++
Sbjct: 145 SAIVKAYSKAGLIVEASKLFCSIP-DPDLALWNVMIL 180


>AT4G14050.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:8103645-8105483 REVERSE
           LENGTH=612
          Length = 612

 Score =  193 bits (491), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 116/387 (29%), Positives = 199/387 (51%), Gaps = 35/387 (9%)

Query: 134 PNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQ 193
           P+ + F  L K+ +        + VH H +   + +D  V +SL+ +YA    L S  + 
Sbjct: 103 PDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNS-AKA 161

Query: 194 LFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQ----------------------- 230
           +FD +  ++ +SWT M+ G+  +G+ ++AL  F  +                        
Sbjct: 162 VFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEA 221

Query: 231 ---YAGVAPNRVTMVNAL------AACADSGAVEMGAWIHDFIRRNGWELDVVLGTALID 281
              +  +   RV +++ L       ACA+  A   G  +H  +   G++  V +  ALID
Sbjct: 222 FSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALID 281

Query: 282 MYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVT 341
           MYAKC  V     +FS ++ ++V +W ++I G+A     E+A+ L++ M   GV+ +EVT
Sbjct: 282 MYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVT 341

Query: 342 LLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRC 401
            + ++ AC+H G V+ GR++F  + +  YG  P+++HY C++DLL RSG L EA  ++  
Sbjct: 342 FVGLIYACSHVGFVEKGRELFQSMTK-DYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHT 400

Query: 402 MPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLV-ELEPANSAYYVHLSNLYAEMGRWDD 460
           MPF P +  W +LL + K QG  +    +A  LV   +  + + Y+ LSN+YA    W  
Sbjct: 401 MPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILLSNIYASASLWGK 460

Query: 461 VEKVRGMMKDRQLTKDLGCSSVEVEEQ 487
           V + R  + + ++ KD G SSVEV ++
Sbjct: 461 VSEARRKLGEMEVRKDPGHSSVEVRKE 487



 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 164/366 (44%), Gaps = 53/366 (14%)

Query: 152 FAQAQSVHAHVLKLGHLHDIYVHNSLLGVY----AASPRLFSLCRQLFDEMTHRDVVSWT 207
              A+++HAH++KLG +    + N+L+ VY    AAS  L     Q+FDEM HRD ++W 
Sbjct: 19  LTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHAL-----QVFDEMPHRDHIAWA 73

Query: 208 VMIMGFRNAGKFDDAL-LAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRR 266
            ++     A      L +       +G+ P+       + ACA+ G+++ G  +H     
Sbjct: 74  SVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFIV 133

Query: 267 NGWELDVVLGTALIDMYAKC-------------------------------GRVEEGVRV 295
           + +  D V+ ++L+DMYAKC                               GR EE + +
Sbjct: 134 SEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALEL 193

Query: 296 FSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRA-DEVTLLAVLSACNHSGL 354
           F  +  KN+++W A+I G   +  G EA  +F  M ++ V   D + L +++ AC +   
Sbjct: 194 FRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAA 253

Query: 355 VDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSL 414
              GRQ+ G ++    GF   V     ++D+ A+   +  A ++   M      + W SL
Sbjct: 254 SIAGRQVHGLVI--ALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVS-WTSL 310

Query: 415 LVSSKSQGDLEFSEFVARKLVE--LEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQ 472
           +V     G  E +  +   +V   ++P N   +V L    + +G    VEK R + +   
Sbjct: 311 IVGMAQHGQAEKALALYDDMVSHGVKP-NEVTFVGLIYACSHVGF---VEKGRELFQ--S 364

Query: 473 LTKDLG 478
           +TKD G
Sbjct: 365 MTKDYG 370



 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 6/186 (3%)

Query: 245 LAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNV 304
           L  CA +  +     +H  I + G      L   L+++Y KCG     ++VF  +  ++ 
Sbjct: 10  LQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDH 69

Query: 305 FTWNAVIKGLALAK-SGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFG 363
             W +V+  L  A  SG+      +     G+R D+    A++ AC + G +D GRQ+  
Sbjct: 70  IAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHC 129

Query: 364 FLVEGKYGFIPNVKHYACMVDLLARSGSLREA---FEVMRCMPFDPTKAMWGSLLVSSKS 420
             +  +Y     VK  + +VD+ A+ G L  A   F+ +R        AM      S + 
Sbjct: 130 HFIVSEYANDEVVK--SSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRK 187

Query: 421 QGDLEF 426
           +  LE 
Sbjct: 188 EEALEL 193


>AT5G52850.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:21414935-21417616 REVERSE
           LENGTH=893
          Length = 893

 Score =  192 bits (489), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 110/368 (29%), Positives = 199/368 (54%), Gaps = 2/368 (0%)

Query: 123 IFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYA 182
           +   M +  + PN  T   + ++ S   H  +   +HA++L+     ++ V NSL+  YA
Sbjct: 414 LLMEMVKREVEPNVVTLSGVLRACSKLRHVRRVLEIHAYLLRRHVDGEMVVGNSLVDAYA 473

Query: 183 ASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMV 242
           +S R       +   M  RD +++T ++  F   GK + AL     M   G+  +++++ 
Sbjct: 474 SS-RKVDYAWNVIRSMKRRDNITYTSLVTRFNELGKHEMALSVINYMYGDGIRMDQLSLP 532

Query: 243 NALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEK 302
             ++A A+ GA+E G  +H +  ++G+     +  +L+DMY+KCG +E+  +VF  +   
Sbjct: 533 GFISASANLGALETGKHLHCYSVKSGFSGAASVLNSLVDMYSKCGSLEDAKKVFEEIATP 592

Query: 303 NVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIF 362
           +V +WN ++ GLA       A+  F  M       D VT L +LSAC++  L D+G + F
Sbjct: 593 DVVSWNGLVSGLASNGFISSALSAFEEMRMKETEPDSVTFLILLSACSNGRLTDLGLEYF 652

Query: 363 GFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQG 422
             +++  Y   P V+HY  +V +L R+G L EA  V+  M   P   ++ +LL + + +G
Sbjct: 653 Q-VMKKIYNIEPQVEHYVHLVGILGRAGRLEEATGVVETMHLKPNAMIFKTLLRACRYRG 711

Query: 423 DLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSV 482
           +L   E +A K + L P++ A Y+ L++LY E G+ +  +K R +M +++L+K LG S+V
Sbjct: 712 NLSLGEDMANKGLALAPSDPALYILLADLYDESGKPELAQKTRNLMTEKRLSKKLGKSTV 771

Query: 483 EVEEQGHT 490
           EV+ + H+
Sbjct: 772 EVQGKVHS 779



 Score =  146 bits (369), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 108/348 (31%), Positives = 170/348 (48%), Gaps = 17/348 (4%)

Query: 98  VFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQS 157
           VF +  +I AF+ S    ++L   S+F  M  +   PN +TF  + +S +     +    
Sbjct: 89  VFAWTVMISAFTKSQEFASAL---SLFEEMMASGTHPNEFTFSSVVRSCAGLRDISYGGR 145

Query: 158 VHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAG 217
           VH  V+K G   +  V +SL  +Y+   +    C +LF  + + D +SWT+MI     A 
Sbjct: 146 VHGSVIKTGFEGNSVVGSSLSDLYSKCGQFKEAC-ELFSSLQNADTISWTMMISSLVGAR 204

Query: 218 KFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGT 277
           K+ +AL  + +M  AGV PN  T V  L A +  G +E G  IH  I   G  L+VVL T
Sbjct: 205 KWREALQFYSEMVKAGVPPNEFTFVKLLGASSFLG-LEFGKTIHSNIIVRGIPLNVVLKT 263

Query: 278 ALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRA 337
           +L+D Y++  ++E+ VRV +S  E++VF W +V+ G       +EA+  F  M   G++ 
Sbjct: 264 SLVDFYSQFSKMEDAVRVLNSSGEQDVFLWTSVVSGFVRNLRAKEAVGTFLEMRSLGLQP 323

Query: 338 DEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLAR-SGSLREAF 396
           +  T  A+LS C+    +D G+QI    +  K GF  +      +VD+  + S S  EA 
Sbjct: 324 NNFTYSAILSLCSAVRSLDFGKQIHSQTI--KVGFEDSTDVGNALVDMYMKCSASEVEAS 381

Query: 397 EVMRCMPFDPTKAMWGSLLVSSKSQGDLE-----FSEFVARKLVELEP 439
            V   M   P    W +L++     G ++       E V R   E+EP
Sbjct: 382 RVFGAM-VSPNVVSWTTLILGLVDHGFVQDCFGLLMEMVKR---EVEP 425



 Score =  139 bits (350), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 138/244 (56%), Gaps = 8/244 (3%)

Query: 158 VHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAG 217
           +H  V+K G L ++ + N+LL +Y  +  +++  R+LFDEM+HR V +WTVMI  F  + 
Sbjct: 45  IHCPVIKFGLLENLDLCNNLLSLYLKTDGIWN-ARKLFDEMSHRTVFAWTVMISAFTKSQ 103

Query: 218 KFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGT 277
           +F  AL  FE+M  +G  PN  T  + + +CA    +  G  +H  + + G+E + V+G+
Sbjct: 104 EFASALSLFEEMMASGTHPNEFTFSSVVRSCAGLRDISYGGRVHGSVIKTGFEGNSVVGS 163

Query: 278 ALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRA 337
           +L D+Y+KCG+ +E   +FSS++  +  +W  +I  L  A+   EA++ ++ M + GV  
Sbjct: 164 SLSDLYSKCGQFKEACELFSSLQNADTISWTMMISSLVGARKWREALQFYSEMVKAGVPP 223

Query: 338 DEVTLLAVLSACNHSGLVDMGRQIF-GFLVEGKYGFIP-NVKHYACMVDLLARSGSLREA 395
           +E T + +L A +  GL + G+ I    +V G    IP NV     +VD  ++   + +A
Sbjct: 224 NEFTFVKLLGASSFLGL-EFGKTIHSNIIVRG----IPLNVVLKTSLVDFYSQFSKMEDA 278

Query: 396 FEVM 399
             V+
Sbjct: 279 VRVL 282



 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 162/354 (45%), Gaps = 8/354 (2%)

Query: 98  VFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQS 157
           VF++ S++  F  +     ++     F  M    + PN++T+  +    SA       + 
Sbjct: 290 VFLWTSVVSGFVRNLRAKEAV---GTFLEMRSLGLQPNNFTYSAILSLCSAVRSLDFGKQ 346

Query: 158 VHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAG 217
           +H+  +K+G      V N+L+ +Y           ++F  M   +VVSWT +I+G  + G
Sbjct: 347 IHSQTIKVGFEDSTDVGNALVDMYMKCSASEVEASRVFGAMVSPNVVSWTTLILGLVDHG 406

Query: 218 KFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGT 277
              D      +M    V PN VT+   L AC+    V     IH ++ R   + ++V+G 
Sbjct: 407 FVQDCFGLLMEMVKREVEPNVVTLSGVLRACSKLRHVRRVLEIHAYLLRRHVDGEMVVGN 466

Query: 278 ALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRA 337
           +L+D YA   +V+    V  S+K ++  T+ +++         E A+ + N M  DG+R 
Sbjct: 467 SLVDAYASSRKVDYAWNVIRSMKRRDNITYTSLVTRFNELGKHEMALSVINYMYGDGIRM 526

Query: 338 DEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFE 397
           D+++L   +SA  + G ++ G+ +  + V  K GF         +VD+ ++ GSL +A +
Sbjct: 527 DQLSLPGFISASANLGALETGKHLHCYSV--KSGFSGAASVLNSLVDMYSKCGSLEDAKK 584

Query: 398 VMRCMPFDPTKAMWGSLLVSSKSQGDLE--FSEFVARKLVELEPANSAYYVHLS 449
           V   +   P    W  L+    S G +    S F   ++ E EP +  + + LS
Sbjct: 585 VFEEIA-TPDVVSWNGLVSGLASNGFISSALSAFEEMRMKETEPDSVTFLILLS 637



 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 98/213 (46%), Gaps = 15/213 (7%)

Query: 242 VNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKE 301
           +  L+ C +S +  +G  IH  + + G   ++ L   L+ +Y K   +    ++F  +  
Sbjct: 28  IRILSFC-ESNSSRIGLHIHCPVIKFGLLENLDLCNNLLSLYLKTDGIWNARKLFDEMSH 86

Query: 302 KNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDM--GR 359
           + VF W  +I     ++    A+ LF  M   G   +E T  +V+ +C  +GL D+  G 
Sbjct: 87  RTVFAWTVMISAFTKSQEFASALSLFEEMMASGTHPNEFTFSSVVRSC--AGLRDISYGG 144

Query: 360 QIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKA---MWGSLLV 416
           ++ G ++  K GF  N    + + DL ++ G  +EA E+   +    T +   M  SL+ 
Sbjct: 145 RVHGSVI--KTGFEGNSVVGSSLSDLYSKCGQFKEACELFSSLQNADTISWTMMISSLVG 202

Query: 417 SSKSQGDLEF-SEFVARKLVELEPANSAYYVHL 448
           + K +  L+F SE V   +    P N   +V L
Sbjct: 203 ARKWREALQFYSEMVKAGV----PPNEFTFVKL 231


>AT3G18840.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:6496198-6498234 FORWARD
           LENGTH=678
          Length = 678

 Score =  192 bits (489), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 122/421 (28%), Positives = 207/421 (49%), Gaps = 36/421 (8%)

Query: 101 FNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHA 160
           +N+LI  ++ + +   +L    +   M  N +  + ++F  +   LS+       + VHA
Sbjct: 228 WNTLIAGYAQNGYEEEAL---KMAVSMEENGLKWDEHSFGAVLNVLSSLKSLKIGKEVHA 284

Query: 161 HVLKLGHLHDIYVHNSLLGVY----------------------AASPRLFSLCRQ----- 193
            VLK G   + +V + ++ VY                      +AS  +     Q     
Sbjct: 285 RVLKNGSYSNKFVSSGIVDVYCKCGNMKYAESAHLLYGFGNLYSASSMIVGYSSQGKMVE 344

Query: 194 ---LFDEMTHRDVVSWTVMIMGFRNAGKFDDAL-LAFEQMQYAGVAPNRVTMVNALAACA 249
              LFD ++ +++V WT M +G+ N  + D  L LA   +      P+ + MV+ L AC+
Sbjct: 345 AKRLFDSLSEKNLVVWTAMFLGYLNLRQPDSVLELARAFIANETNTPDSLVMVSVLGACS 404

Query: 250 DSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNA 309
               +E G  IH    R G  +D  L TA +DMY+KCG VE   R+F S  E++   +NA
Sbjct: 405 LQAYMEPGKEIHGHSLRTGILMDKKLVTAFVDMYSKCGNVEYAERIFDSSFERDTVMYNA 464

Query: 310 VIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGK 369
           +I G A      ++ + F  M + G + DE+T +A+LSAC H GLV  G + F  ++E  
Sbjct: 465 MIAGCAHHGHEAKSFQHFEDMTEGGFKPDEITFMALLSACRHRGLVLEGEKYFKSMIEA- 523

Query: 370 YGFIPNVKHYACMVDLLARSGSLREAFEVMRCMP-FDPTKAMWGSLLVSSKSQGDLEFSE 428
           Y   P   HY CM+DL  ++  L +A E+M  +   +    + G+ L +     + E  +
Sbjct: 524 YNISPETGHYTCMIDLYGKAYRLDKAIELMEGIDQVEKDAVILGAFLNACSWNKNTELVK 583

Query: 429 FVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQG 488
            V  KL+ +E +N + Y+ ++N YA  GRWD+++++R  M+ ++L    GCS   +++Q 
Sbjct: 584 EVEEKLLVIEGSNGSRYIQIANAYASSGRWDEMQRIRHQMRGKELEIFSGCSWANIDKQF 643

Query: 489 H 489
           H
Sbjct: 644 H 644



 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/395 (17%), Positives = 154/395 (38%), Gaps = 77/395 (19%)

Query: 98  VFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHR---NTILPNHYTFPFLFKSLSAPCHFAQ 154
           +  +N+L+  F+ +    +    + +F  MHR   + I  + +T   + K  +   +   
Sbjct: 86  LITYNTLLSGFAKTDGCESE--AIEMFGEMHRKEKDDIWIDDFTVTTMVKLSAKLTNVFY 143

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCR-------QLFDEMTHR------ 201
            + +H  ++K G+    +  +SL+ +Y+   +   +C        +  D +         
Sbjct: 144 GEQLHGVLVKTGNDGTKFAVSSLIHMYSKCGKFKEVCNIFNGSCVEFVDSVARNAMIAAY 203

Query: 202 --------------------DVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTM 241
                               D +SW  +I G+   G  ++AL     M+  G+  +  + 
Sbjct: 204 CREGDIDKALSVFWRNPELNDTISWNTLIAGYAQNGYEEEALKMAVSMEENGLKWDEHSF 263

Query: 242 VNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVE----------- 290
              L   +   ++++G  +H  + +NG   +  + + ++D+Y KCG ++           
Sbjct: 264 GAVLNVLSSLKSLKIGKEVHARVLKNGSYSNKFVSSGIVDVYCKCGNMKYAESAHLLYGF 323

Query: 291 --------------------EGVRVFSSVKEKNVFTWNAVIKG---LALAKSGEEAIRLF 327
                               E  R+F S+ EKN+  W A+  G   L    S  E  R F
Sbjct: 324 GNLYSASSMIVGYSSQGKMVEAKRLFDSLSEKNLVVWTAMFLGYLNLRQPDSVLELARAF 383

Query: 328 NRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLA 387
              E +    D + +++VL AC+    ++ G++I G  +  + G + + K     VD+ +
Sbjct: 384 IANETN--TPDSLVMVSVLGACSLQAYMEPGKEIHGHSL--RTGILMDKKLVTAFVDMYS 439

Query: 388 RSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQG 422
           + G++  A  +     F+    M+ +++      G
Sbjct: 440 KCGNVEYAERIFDS-SFERDTVMYNAMIAGCAHHG 473



 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 135/339 (39%), Gaps = 80/339 (23%)

Query: 159 HAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGK 218
           H   +K G        N L+ +Y+ S  L    R +FDEM  R+V SW  +I  +    K
Sbjct: 11  HIRSIKSGSTLTAVSSNQLVNLYSKSG-LLREARNVFDEMLERNVYSWNAVIAAYV---K 66

Query: 219 FDDALLAFEQMQYAGVAPNRVTMVNALAACA-----DSGAVEM----------GAWIHDF 263
           F++   A E  +      + +T    L+  A     +S A+EM            WI DF
Sbjct: 67  FNNVKEARELFESDNCERDLITYNTLLSGFAKTDGCESEAIEMFGEMHRKEKDDIWIDDF 126

Query: 264 IRRN-------------GWELDVVL------GT-----ALIDMYAKCGRVEEGVRVFSSV 299
                            G +L  VL      GT     +LI MY+KCG+ +E   +F+  
Sbjct: 127 TVTTMVKLSAKLTNVFYGEQLHGVLVKTGNDGTKFAVSSLIHMYSKCGKFKEVCNIFNGS 186

Query: 300 ------------------------KEKNVF----------TWNAVIKGLALAKSGEEAIR 325
                                   K  +VF          +WN +I G A     EEA++
Sbjct: 187 CVEFVDSVARNAMIAAYCREGDIDKALSVFWRNPELNDTISWNTLIAGYAQNGYEEEALK 246

Query: 326 LFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDL 385
           +   ME++G++ DE +  AVL+  +    + +G+++   ++  K G   N    + +VD+
Sbjct: 247 MAVSMEENGLKWDEHSFGAVLNVLSSLKSLKIGKEVHARVL--KNGSYSNKFVSSGIVDV 304

Query: 386 LARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDL 424
             + G+++ A        F    +   S++V   SQG +
Sbjct: 305 YCKCGNMKYAESAHLLYGFGNLYSA-SSMIVGYSSQGKM 342


>AT4G08210.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr4:5183813-5185873 REVERSE
           LENGTH=686
          Length = 686

 Score =  191 bits (486), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 108/368 (29%), Positives = 194/368 (52%), Gaps = 5/368 (1%)

Query: 98  VFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQS 157
           V ++NS++  F  +  +  +L    +   ++++ +  + YT     K      +      
Sbjct: 307 VAVWNSMLSGFLINEENEAALW---LLLQIYQSDLCFDSYTLSGALKICINYVNLRLGLQ 363

Query: 158 VHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAG 217
           VH+ V+  G+  D  V + L+ ++A    +     +LF  + ++D+++++ +I G   +G
Sbjct: 364 VHSLVVVSGYELDYIVGSILVDLHANVGNIQD-AHKLFHRLPNKDIIAFSGLIRGCVKSG 422

Query: 218 KFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGT 277
               A   F ++   G+  ++  + N L  C+   ++  G  IH    + G+E + V  T
Sbjct: 423 FNSLAFYLFRELIKLGLDADQFIVSNILKVCSSLASLGWGKQIHGLCIKKGYESEPVTAT 482

Query: 278 ALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRA 337
           AL+DMY KCG ++ GV +F  + E++V +W  +I G       EEA R F++M   G+  
Sbjct: 483 ALVDMYVKCGEIDNGVVLFDGMLERDVVSWTGIIVGFGQNGRVEEAFRYFHKMINIGIEP 542

Query: 338 DEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFE 397
           ++VT L +LSAC HSGL++  R     + + +YG  P ++HY C+VDLL ++G  +EA E
Sbjct: 543 NKVTFLGLLSACRHSGLLEEARSTLETM-KSEYGLEPYLEHYYCVVDLLGQAGLFQEANE 601

Query: 398 VMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGR 457
           ++  MP +P K +W SLL +  +  +      +A KL++  P + + Y  LSN YA +G 
Sbjct: 602 LINKMPLEPDKTIWTSLLTACGTHKNAGLVTVIAEKLLKGFPDDPSVYTSLSNAYATLGM 661

Query: 458 WDDVEKVR 465
           WD + KVR
Sbjct: 662 WDQLSKVR 669



 Score =  121 bits (304), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 146/298 (48%), Gaps = 38/298 (12%)

Query: 152 FAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIM 211
           F + +S+ AHV+K G   ++++ N+++ +Y    RL S   ++FDEM+ R++V+WT M+ 
Sbjct: 21  FKRGESIQAHVIKQGISQNVFIANNVISMYV-DFRLLSDAHKVFDEMSERNIVTWTTMVS 79

Query: 212 GFRNAGKFDDALLAFEQM-QYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWE 270
           G+ + GK + A+  + +M      A N       L AC   G +++G  +++ I +    
Sbjct: 80  GYTSDGKPNKAIELYRRMLDSEEEAANEFMYSAVLKACGLVGDIQLGILVYERIGKENLR 139

Query: 271 LDVVLGTALIDMYAKCGRV-------------------------------EEGVRVFSSV 299
            DVVL  +++DMY K GR+                               +E V +F  +
Sbjct: 140 GDVVLMNSVVDMYVKNGRLIEANSSFKEILRPSSTSWNTLISGYCKAGLMDEAVTLFHRM 199

Query: 300 KEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGR 359
            + NV +WN +I G  + K    A+    RM+++G+  D   L   L AC+  GL+ MG+
Sbjct: 200 PQPNVVSWNCLISGF-VDKGSPRALEFLVRMQREGLVLDGFALPCGLKACSFGGLLTMGK 258

Query: 360 QIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVM--RCMPFDPTKAMWGSLL 415
           Q+   +V  K G   +    + ++D+ +  GSL  A +V     +  + + A+W S+L
Sbjct: 259 QLHCCVV--KSGLESSPFAISALIDMYSNCGSLIYAADVFHQEKLAVNSSVAVWNSML 314



 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 123/266 (46%), Gaps = 8/266 (3%)

Query: 175 NSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGV 234
           N+L+  Y  +  L      LF  M   +VVSW  +I GF + G    AL    +MQ  G+
Sbjct: 177 NTLISGYCKAG-LMDEAVTLFHRMPQPNVVSWNCLISGFVDKGS-PRALEFLVRMQREGL 234

Query: 235 APNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVR 294
             +   +   L AC+  G + MG  +H  + ++G E      +ALIDMY+ CG +     
Sbjct: 235 VLDGFALPCGLKACSFGGLLTMGKQLHCCVVKSGLESSPFAISALIDMYSNCGSLIYAAD 294

Query: 295 VFSSVK---EKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNH 351
           VF   K     +V  WN+++ G  + +  E A+ L  ++ Q  +  D  TL   L  C +
Sbjct: 295 VFHQEKLAVNSSVAVWNSMLSGFLINEENEAALWLLLQIYQSDLCFDSYTLSGALKICIN 354

Query: 352 SGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMW 411
              + +G Q+   +V   Y     V   + +VDL A  G++++A ++   +P     A  
Sbjct: 355 YVNLRLGLQVHSLVVVSGYELDYIVG--SILVDLHANVGNIQDAHKLFHRLPNKDIIAFS 412

Query: 412 GSLLVSSKSQGDLEFSEFVARKLVEL 437
           G +    KS G    + ++ R+L++L
Sbjct: 413 GLIRGCVKS-GFNSLAFYLFRELIKL 437



 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 12/173 (6%)

Query: 248 CADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTW 307
           C    A + G  I   + + G   +V +   +I MY     + +  +VF  + E+N+ TW
Sbjct: 15  CGKVQAFKRGESIQAHVIKQGISQNVFIANNVISMYVDFRLLSDAHKVFDEMSERNIVTW 74

Query: 308 NAVIKGLALAKSGEEAIRLFNRM-EQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLV 366
             ++ G        +AI L+ RM + +   A+E    AVL AC   G + +G  ++  + 
Sbjct: 75  TTMVSGYTSDGKPNKAIELYRRMLDSEEEAANEFMYSAVLKACGLVGDIQLGILVYERI- 133

Query: 367 EGKYGFIPNVKHYACMVDLLARSGSLREA----FEVMRCMPFDPTKAMWGSLL 415
            GK     +V     +VD+  ++G L EA     E++R     P+   W +L+
Sbjct: 134 -GKENLRGDVVLMNSVVDMYVKNGRLIEANSSFKEILR-----PSSTSWNTLI 180


>AT3G20730.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:7247095-7248878 FORWARD
           LENGTH=564
          Length = 564

 Score =  190 bits (483), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 112/357 (31%), Positives = 191/357 (53%), Gaps = 8/357 (2%)

Query: 119 TPLSIFAHMHRNTILPNHYTFPFLFK-SLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSL 177
           T  S+F  M      P+ +TF  L + S+   C       +H   +KLG      +  SL
Sbjct: 197 TSFSLFQLMLTEGKKPDCFTFGSLLRASIVVKC-LEIVSELHGLAIKLGFGRSSALIRSL 255

Query: 178 LGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGK-FDDALLAFEQMQYAGVAP 236
           +  Y     L +  + L +    RD++S T +I GF        DA   F+ M       
Sbjct: 256 VNAYVKCGSLANAWK-LHEGTKKRDLLSCTALITGFSQQNNCTSDAFDIFKDMIRMKTKM 314

Query: 237 NRVTMVNALAACADSGAVEMGAWIHDF-IRRNGWELDVVLGTALIDMYAKCGRVEEGVRV 295
           + V + + L  C    +V +G  IH F ++ +    DV LG +LIDMYAK G +E+ V  
Sbjct: 315 DEVVVSSMLKICTTIASVTIGRQIHGFALKSSQIRFDVALGNSLIDMYAKSGEIEDAVLA 374

Query: 296 FSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLV 355
           F  +KEK+V +W ++I G     + E+AI L+NRME + ++ ++VT L++LSAC+H+G  
Sbjct: 375 FEEMKEKDVRSWTSLIAGYGRHGNFEKAIDLYNRMEHERIKPNDVTFLSLLSACSHTGQT 434

Query: 356 DMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMP--FDPTKAMWGS 413
           ++G +I+  ++  K+G     +H +C++D+LARSG L EA+ ++R        + + WG+
Sbjct: 435 ELGWKIYDTMIN-KHGIEAREEHLSCIIDMLARSGYLEEAYALIRSKEGIVSLSSSTWGA 493

Query: 414 LLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKD 470
            L + +  G+++ S+  A +L+ +EP     Y++L+++YA  G WD+    R +MK+
Sbjct: 494 FLDACRRHGNVQLSKVAATQLLSMEPRKPVNYINLASVYAANGAWDNALNTRKLMKE 550



 Score =  119 bits (297), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 134/269 (49%), Gaps = 7/269 (2%)

Query: 134 PNHYTFPFLFKSLSAPCHFAQAQS----VHAHVLKLGHLHDIYVHNSLLGVYAASPRLFS 189
            N+   P L+      C +   +     +H + +  G   ++ + + L+ +Y     +  
Sbjct: 6   ENYLLSPSLYLKALKLCSYQNVKKQLLLIHGNSITNGFCSNLQLKDMLIDLYLKQGDV-K 64

Query: 190 LCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACA 249
             R+LFD ++ RDVVSWT MI  F   G   DALL F++M    V  N+ T  + L +C 
Sbjct: 65  HARKLFDRISKRDVVSWTAMISRFSRCGYHPDALLLFKEMHREDVKANQFTYGSVLKSCK 124

Query: 250 DSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNA 309
           D G ++ G  IH  + +     ++++ +AL+ +YA+CG++EE    F S+KE+++ +WNA
Sbjct: 125 DLGCLKEGMQIHGSVEKGNCAGNLIVRSALLSLYARCGKMEEARLQFDSMKERDLVSWNA 184

Query: 310 VIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGK 369
           +I G       + +  LF  M  +G + D  T  ++L A      +++  ++ G  +  K
Sbjct: 185 MIDGYTANACADTSFSLFQLMLTEGKKPDCFTFGSLLRASIVVKCLEIVSELHGLAI--K 242

Query: 370 YGFIPNVKHYACMVDLLARSGSLREAFEV 398
            GF  +      +V+   + GSL  A+++
Sbjct: 243 LGFGRSSALIRSLVNAYVKCGSLANAWKL 271



 Score =  113 bits (283), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 152/335 (45%), Gaps = 9/335 (2%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           + +  V  + ++I  FS   +H ++L    +F  MHR  +  N +T+  + KS       
Sbjct: 73  ISKRDVVSWTAMISRFSRCGYHPDALL---LFKEMHREDVKANQFTYGSVLKSCKDLGCL 129

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMG 212
            +   +H  V K     ++ V ++LL +YA   ++    R  FD M  RD+VSW  MI G
Sbjct: 130 KEGMQIHGSVEKGNCAGNLIVRSALLSLYARCGKMEE-ARLQFDSMKERDLVSWNAMIDG 188

Query: 213 FRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELD 272
           +      D +   F+ M   G  P+  T  + L A      +E+ + +H    + G+   
Sbjct: 189 YTANACADTSFSLFQLMLTEGKKPDCFTFGSLLRASIVVKCLEIVSELHGLAIKLGFGRS 248

Query: 273 VVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKS-GEEAIRLFNRME 331
             L  +L++ Y KCG +    ++    K++++ +  A+I G +   +   +A  +F  M 
Sbjct: 249 SALIRSLVNAYVKCGSLANAWKLHEGTKKRDLLSCTALITGFSQQNNCTSDAFDIFKDMI 308

Query: 332 QDGVRADEVTLLAVLSACNHSGLVDMGRQIFGF-LVEGKYGFIPNVKHYACMVDLLARSG 390
           +   + DEV + ++L  C     V +GRQI GF L   +  F  +V     ++D+ A+SG
Sbjct: 309 RMKTKMDEVVVSSMLKICTTIASVTIGRQIHGFALKSSQIRF--DVALGNSLIDMYAKSG 366

Query: 391 SLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLE 425
            + +A      M     ++ W SL+      G+ E
Sbjct: 367 EIEDAVLAFEEMKEKDVRS-WTSLIAGYGRHGNFE 400


>AT4G14850.1 | Symbols: LOI1, MEF11 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:8513947-8516275 FORWARD
           LENGTH=684
          Length = 684

 Score =  190 bits (483), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 118/402 (29%), Positives = 199/402 (49%), Gaps = 7/402 (1%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P  ++  +N+ I   S+S         +  F    R    PN  TF     + S   H 
Sbjct: 169 IPERNLETWNAFI---SNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHL 225

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMG 212
                +H  VL+ G   D+ V N L+  Y    ++ S    +F EM  ++ VSW  ++  
Sbjct: 226 NLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRS-SEIIFTEMGTKNAVSWCSLVAA 284

Query: 213 FRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELD 272
           +    + + A + + + +   V  +   + + L+ACA    +E+G  IH    +   E  
Sbjct: 285 YVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERT 344

Query: 273 VVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQ 332
           + +G+AL+DMY KCG +E+  + F  + EKN+ T N++I G A     + A+ LF  M  
Sbjct: 345 IFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAP 404

Query: 333 DGV--RADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSG 390
            G     + +T +++LSAC+ +G V+ G +IF  +    YG  P  +HY+C+VD+L R+G
Sbjct: 405 RGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSM-RSTYGIEPGAEHYSCIVDMLGRAG 463

Query: 391 SLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSN 450
            +  A+E ++ MP  PT ++WG+L  + +  G  +     A  L +L+P +S  +V LSN
Sbjct: 464 MVERAYEFIKKMPIQPTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSN 523

Query: 451 LYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGHTSQ 492
            +A  GRW +   VR  +K   + K  G S + V+ Q H  Q
Sbjct: 524 TFAAAGRWAEANTVREELKGVGIKKGAGYSWITVKNQVHAFQ 565



 Score =  134 bits (338), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/373 (24%), Positives = 173/373 (46%), Gaps = 13/373 (3%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
            P  +V  + SLI   + + H   +L     F  M R  ++PN +TFP  FK++++    
Sbjct: 68  TPARNVVSWTSLISGLAQNGHFSTALVE---FFEMRREGVVPNDFTFPCAFKAVASLRLP 124

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMG 212
              + +HA  +K G + D++V  S   +Y  + RL    R+LFDE+  R++ +W   I  
Sbjct: 125 VTGKQIHALAVKCGRILDVFVGCSAFDMYCKT-RLRDDARKLFDEIPERNLETWNAFISN 183

Query: 213 FRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELD 272
               G+  +A+ AF + +     PN +T    L AC+D   + +G  +H  + R+G++ D
Sbjct: 184 SVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTD 243

Query: 273 VVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQ 332
           V +   LID Y KC ++     +F+ +  KN  +W +++         E+A  L+ R  +
Sbjct: 244 VSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRK 303

Query: 333 DGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEG---KYGFIPNVKHYACMVDLLARS 389
           D V   +  + +VLSAC     +++GR I    V+    +  F+ +      +VD+  + 
Sbjct: 304 DIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSA-----LVDMYGKC 358

Query: 390 GSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLS 449
           G + ++ +    MP +       SL+     QG ++ +  +  ++       +  Y+   
Sbjct: 359 GCIEDSEQAFDEMP-EKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFV 417

Query: 450 NLYAEMGRWDDVE 462
           +L +   R   VE
Sbjct: 418 SLLSACSRAGAVE 430


>AT3G13880.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:4572180-4574426 FORWARD
           LENGTH=748
          Length = 748

 Score =  189 bits (479), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 120/400 (30%), Positives = 195/400 (48%), Gaps = 4/400 (1%)

Query: 93  VPRPHVFIFNSLIRAFSHSHH--HHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPC 150
           +P  +V  +N++I  F          S     +F  M R  + P+  TF  + K+ SA  
Sbjct: 313 MPSKNVVTYNAMISGFLQMDEITDEASSEAFKLFMDMQRRGLEPSPSTFSVVLKACSAAK 372

Query: 151 HFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMI 210
                + +HA + K     D ++ ++L+ +YA          Q F   + +D+ SWT MI
Sbjct: 373 TLEYGRQIHALICKNNFQSDEFIGSALIELYALMGSTED-GMQCFASTSKQDIASWTSMI 431

Query: 211 MGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWE 270
                  + + A   F Q+  + + P   T+   ++ACAD  A+  G  I  +  ++G +
Sbjct: 432 DCHVQNEQLESAFDLFRQLFSSHIRPEEYTVSLMMSACADFAALSSGEQIQGYAIKSGID 491

Query: 271 LDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRM 330
               + T+ I MYAK G +    +VF  V+  +V T++A+I  LA   S  EA+ +F  M
Sbjct: 492 AFTSVKTSSISMYAKSGNMPLANQVFIEVQNPDVATYSAMISSLAQHGSANEALNIFESM 551

Query: 331 EQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSG 390
           +  G++ ++   L VL AC H GLV  G + F  + +  Y   PN KH+ C+VDLL R+G
Sbjct: 552 KTHGIKPNQQAFLGVLIACCHGGLVTQGLKYFQCM-KNDYRINPNEKHFTCLVDLLGRTG 610

Query: 391 SLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSN 450
            L +A  ++    F      W +LL S +   D    + VA +L+ELEP  S  YV L N
Sbjct: 611 RLSDAENLILSSGFQDHPVTWRALLSSCRVYKDSVIGKRVAERLMELEPEASGSYVLLHN 670

Query: 451 LYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGHT 490
           +Y + G     E+VR +M+DR + K+   S + +  Q H+
Sbjct: 671 IYNDSGVNSSAEEVRELMRDRGVKKEPALSWIVIGNQTHS 710



 Score =  127 bits (320), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 155/333 (46%), Gaps = 19/333 (5%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P  ++  FNSLI  ++    +  ++    +F       +  + +T+          C  
Sbjct: 108 MPERNIISFNSLISGYTQMGFYEQAM---ELFLEAREANLKLDKFTYAGALGFCGERCDL 164

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMG 212
              + +H  V+  G    +++ N L+ +Y+   +L      LFD    RD VSW  +I G
Sbjct: 165 DLGELLHGLVVVNGLSQQVFLINVLIDMYSKCGKL-DQAMSLFDRCDERDQVSWNSLISG 223

Query: 213 FRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACA---DSGAVEMGAWIHDFIRRNGW 269
           +   G  ++ L    +M   G+      + + L AC    + G +E G  IH +  + G 
Sbjct: 224 YVRVGAAEEPLNLLAKMHRDGLNLTTYALGSVLKACCINLNEGFIEKGMAIHCYTAKLGM 283

Query: 270 ELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGL-----ALAKSGEEAI 324
           E D+V+ TAL+DMYAK G ++E +++FS +  KNV T+NA+I G         ++  EA 
Sbjct: 284 EFDIVVRTALLDMYAKNGSLKEAIKLFSLMPSKNVVTYNAMISGFLQMDEITDEASSEAF 343

Query: 325 RLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVD 384
           +LF  M++ G+     T   VL AC+ +  ++ GRQI   +   K  F  +    + +++
Sbjct: 344 KLFMDMQRRGLEPSPSTFSVVLKACSAAKTLEYGRQIHALIC--KNNFQSDEFIGSALIE 401

Query: 385 LLARSGSLREAFEVMRCMPFDPTK--AMWGSLL 415
           L A  GS  +    M+C      +  A W S++
Sbjct: 402 LYALMGSTEDG---MQCFASTSKQDIASWTSMI 431



 Score =  127 bits (318), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 142/278 (51%), Gaps = 7/278 (2%)

Query: 129 RNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLF 188
           +NT L +   +  LF++ +        +  H H++K      +Y+ N+LL +Y    R  
Sbjct: 41  KNTALDSE-GYKILFQTAAKSGSVVLGKLAHGHMIKSSLNPCLYLLNNLLNMYCKC-REL 98

Query: 189 SLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAAC 248
              RQLFD M  R+++S+  +I G+   G ++ A+  F + + A +  ++ T   AL  C
Sbjct: 99  GFARQLFDRMPERNIISFNSLISGYTQMGFYEQAMELFLEAREANLKLDKFTYAGALGFC 158

Query: 249 ADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWN 308
            +   +++G  +H  +  NG    V L   LIDMY+KCG++++ + +F    E++  +WN
Sbjct: 159 GERCDLDLGELLHGLVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSLFDRCDERDQVSWN 218

Query: 309 AVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACN---HSGLVDMGRQIFGFL 365
           ++I G     + EE + L  +M +DG+      L +VL AC    + G ++ G  I  + 
Sbjct: 219 SLISGYVRVGAAEEPLNLLAKMHRDGLNLTTYALGSVLKACCINLNEGFIEKGMAIHCY- 277

Query: 366 VEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMP 403
              K G   ++     ++D+ A++GSL+EA ++   MP
Sbjct: 278 -TAKLGMEFDIVVRTALLDMYAKNGSLKEAIKLFSLMP 314


>AT3G50420.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:18710871-18713649 REVERSE
           LENGTH=794
          Length = 794

 Score =  189 bits (479), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 113/390 (28%), Positives = 206/390 (52%), Gaps = 6/390 (1%)

Query: 96  PHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQA 155
           P++  +NS+I   S +     ++        M  +T  P+ YTF     + + P  F   
Sbjct: 364 PNLVSWNSIISGCSENGFGEQAMLMYRRLLRM--STPRPDEYTFSAAISATAEPERFVHG 421

Query: 156 QSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRN 215
           + +H  V KLG+   ++V  +LL +Y  + R     +++FD M  RDVV WT MI+G   
Sbjct: 422 KLLHGQVTKLGYERSVFVGTTLLSMYFKN-REAESAQKVFDVMKERDVVLWTEMIVGHSR 480

Query: 216 AGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVL 275
            G  + A+  F +M       +  ++ + + AC+D   +  G   H    R G++  + +
Sbjct: 481 LGNSELAVQFFIEMYREKNRSDGFSLSSVIGACSDMAMLRQGEVFHCLAIRTGFDCVMSV 540

Query: 276 GTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGV 335
             AL+DMY K G+ E    +FS     ++  WN+++   +     E+A+  F ++ ++G 
Sbjct: 541 CGALVDMYGKNGKYETAETIFSLASNPDLKCWNSMLGAYSQHGMVEKALSFFEQILENGF 600

Query: 336 RADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREA 395
             D VT L++L+AC+H G    G+ ++  + E   G     KHY+CMV+L++++G + EA
Sbjct: 601 MPDAVTYLSLLAACSHRGSTLQGKFLWNQMKE--QGIKAGFKHYSCMVNLVSKAGLVDEA 658

Query: 396 FEVMRCMPFDPTKA-MWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAE 454
            E++   P    +A +W +LL +  +  +L+   + A ++++L+P ++A ++ LSNLYA 
Sbjct: 659 LELIEQSPPGNNQAELWRTLLSACVNTRNLQIGLYAAEQILKLDPEDTATHILLSNLYAV 718

Query: 455 MGRWDDVEKVRGMMKDRQLTKDLGCSSVEV 484
            GRW+DV ++R  ++    +KD G S +EV
Sbjct: 719 NGRWEDVAEMRRKIRGLASSKDPGLSWIEV 748



 Score =  136 bits (342), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 163/342 (47%), Gaps = 19/342 (5%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P  +V  +N+L  A+S +    +   PL+   HM    + PN  TF  L +  +     
Sbjct: 158 MPHRNVVSYNALYSAYSRNPDFASYAFPLT--THMAFEYVKPNSSTFTSLVQVCAVLEDV 215

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMG 212
               S+++ ++KLG+  ++ V  S+LG+Y++   L S  R++FD + +RD V+W  MI+G
Sbjct: 216 LMGSSLNSQIIKLGYSDNVVVQTSVLGMYSSCGDLES-ARRIFDCVNNRDAVAWNTMIVG 274

Query: 213 FRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELD 272
                K +D L+ F  M  +GV P + T    L  C+  G+  +G  IH  I  +    D
Sbjct: 275 SLKNDKIEDGLMFFRNMLMSGVDPTQFTYSIVLNGCSKLGSYSLGKLIHARIIVSDSLAD 334

Query: 273 VVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNR-ME 331
           + L  AL+DMY  CG + E   VF  +   N+ +WN++I G +    GE+A+ ++ R + 
Sbjct: 335 LPLDNALLDMYCSCGDMREAFYVFGRIHNPNLVSWNSIISGCSENGFGEQAMLMYRRLLR 394

Query: 332 QDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGS 391
               R DE T  A +SA       +  R + G L+ G+   +   +       LL+    
Sbjct: 395 MSTPRPDEYTFSAAISAT-----AEPERFVHGKLLHGQVTKLGYERSVFVGTTLLSMYFK 449

Query: 392 LREA------FEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFS 427
            REA      F+VM+    +    +W  ++V     G+ E +
Sbjct: 450 NREAESAQKVFDVMK----ERDVVLWTEMIVGHSRLGNSELA 487



 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/264 (20%), Positives = 105/264 (39%), Gaps = 14/264 (5%)

Query: 172 YVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDD------ALLA 225
           Y +N+L+ +Y     L    R++FD+M  R++V+   +   F               L +
Sbjct: 23  YANNNLISMYVRCSSL-EQARKVFDKMPQRNIVTLFGLSAVFEYVSMGSSLHSQIIKLGS 81

Query: 226 FEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDV---VLGTALIDM 282
           F+ + +  +     ++V     C     ++    IH  +   G             LI M
Sbjct: 82  FQMIFFMPLNEIASSVVELTRKCVSITVLKRARQIHALVLTAGAGAATESPYANNNLISM 141

Query: 283 YAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKS-GEEAIRLFNRMEQDGVRADEVT 341
           Y +CG +E+  +VF  +  +NV ++NA+    +        A  L   M  + V+ +  T
Sbjct: 142 YVRCGSLEQARKVFDKMPHRNVVSYNALYSAYSRNPDFASYAFPLTTHMAFEYVKPNSST 201

Query: 342 LLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRC 401
             +++  C     V MG  +   ++  K G+  NV     ++ + +  G L  A  +  C
Sbjct: 202 FTSLVQVCAVLEDVLMGSSLNSQII--KLGYSDNVVVQTSVLGMYSSCGDLESARRIFDC 259

Query: 402 MPFDPTKAMWGSLLVSSKSQGDLE 425
           +  +     W +++V S     +E
Sbjct: 260 VN-NRDAVAWNTMIVGSLKNDKIE 282


>AT5G19020.1 | Symbols: MEF18 | mitochondrial editing factor  18 |
           chr5:6352771-6354828 REVERSE LENGTH=685
          Length = 685

 Score =  188 bits (478), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 100/286 (34%), Positives = 170/286 (59%), Gaps = 5/286 (1%)

Query: 192 RQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQM-QYAGVAPNRVTMVNALAACAD 250
           R++FD+   +D+ SW  MI G+  +     AL  F +M   + V P+ +TMV+  +A + 
Sbjct: 391 REVFDQTHDKDIFSWNAMISGYAQSLSPQLALHLFREMISSSQVKPDAITMVSVFSAISS 450

Query: 251 SGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVF---SSVKEKNVFTW 307
            G++E G   HD++  +    +  L  A+IDMYAKCG +E  + +F    ++    +  W
Sbjct: 451 LGSLEEGKRAHDYLNFSTIPPNDNLTAAIIDMYAKCGSIETALNIFHQTKNISSSTISPW 510

Query: 308 NAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVE 367
           NA+I G A     + A+ L++ ++   ++ + +T + VLSAC H+GLV++G+  F  + +
Sbjct: 511 NAIICGSATHGHAKLALDLYSDLQSLPIKPNSITFVGVLSACCHAGLVELGKTYFESM-K 569

Query: 368 GKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFS 427
             +G  P++KHY CMVDLL ++G L EA E+++ MP      +WG LL +S++ G++E +
Sbjct: 570 SDHGIEPDIKHYGCMVDLLGKAGRLEEAKEMIKKMPVKADVMIWGMLLSASRTHGNVEIA 629

Query: 428 EFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQL 473
           E  A +L  ++P++    V LSN+YA+ GRW+DV  VR  M+ R +
Sbjct: 630 ELAATELAAIDPSHGGCKVMLSNVYADAGRWEDVALVREEMRTRDV 675



 Score =  108 bits (271), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 96/405 (23%), Positives = 171/405 (42%), Gaps = 91/405 (22%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P      + +LI+ ++ ++    ++    +F  M    I+ N  T   +  + S     
Sbjct: 133 MPERSCVSYTTLIKGYAQNNQWSEAM---ELFREMRNLGIMLNEVTLATVISACSHLGGI 189

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLC----RQLFDEMTHRDVVSWTV 208
              + + +  +KL     ++V  +LL +Y        LC    R+LFDEM  R++V+W V
Sbjct: 190 WDCRMLQSLAIKLKLEGRVFVSTNLLHMYC-----LCLCLKDARKLFDEMPERNLVTWNV 244

Query: 209 MIMGFRNAG-------------------------------KFDDALLAFEQMQYAGVAPN 237
           M+ G+  AG                               + D+AL+ + +M   G+ P+
Sbjct: 245 MLNGYSKAGLIEQAEELFDQITEKDIVSWGTMIDGCLRKNQLDEALVYYTEMLRCGMKPS 304

Query: 238 RVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL----------------DVVLG----- 276
            V MV+ L+A A S     G  +H  I + G++                 D+ L      
Sbjct: 305 EVMMVDLLSASARSVGSSKGLQLHGTIVKRGFDCYDFLQATIIHFYAVSNDIKLALQQFE 364

Query: 277 ----------TALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRL 326
                      ALI  + K G VE+   VF    +K++F+WNA+I G A + S + A+ L
Sbjct: 365 ASVKDHIASRNALIAGFVKNGMVEQAREVFDQTHDKDIFSWNAMISGYAQSLSPQLALHL 424

Query: 327 FNRM-EQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFI-PNVKHYACMVD 384
           F  M     V+ D +T+++V SA +  G ++ G++   +L    +  I PN    A ++D
Sbjct: 425 FREMISSSQVKPDAITMVSVFSAISSLGSLEEGKRAHDYL---NFSTIPPNDNLTAAIID 481

Query: 385 LLARSGSLREAFEVMRCMPFDPTKAM-------WGSLLVSSKSQG 422
           + A+ GS+  A  +     F  TK +       W +++  S + G
Sbjct: 482 MYAKCGSIETALNI-----FHQTKNISSSTISPWNAIICGSATHG 521



 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 117/247 (47%), Gaps = 15/247 (6%)

Query: 145 SLSAPCHF-AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDV 203
           ++ A C   A A+SV     KL    D    N ++  Y  S RL+   + LFD M  R  
Sbjct: 84  NMYAKCRLLADAESVFRDHAKL----DSASFNIMVDGYVRSRRLWDALK-LFDVMPERSC 138

Query: 204 VSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDF 263
           VS+T +I G+    ++ +A+  F +M+  G+  N VT+   ++AC+  G +     +   
Sbjct: 139 VSYTTLIKGYAQNNQWSEAMELFREMRNLGIMLNEVTLATVISACSHLGGIWDCRMLQSL 198

Query: 264 IRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEA 323
             +   E  V + T L+ MY  C  +++  ++F  + E+N+ TWN ++ G + A   E+A
Sbjct: 199 AIKLKLEGRVFVSTNLLHMYCLCLCLKDARKLFDEMPERNLVTWNVMLNGYSKAGLIEQA 258

Query: 324 IRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMV 383
             LF+++ +     D V+   ++  C     +D     +  ++  + G  P+      MV
Sbjct: 259 EELFDQITE----KDIVSWGTMIDGCLRKNQLDEALVYYTEML--RCGMKPS---EVMMV 309

Query: 384 DLLARSG 390
           DLL+ S 
Sbjct: 310 DLLSASA 316



 Score = 65.5 bits (158), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 101/231 (43%), Gaps = 42/231 (18%)

Query: 241 MVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCG------------- 287
           +V+AL +CA S  V  G  IH  + ++G + +  +  ++++MYAKC              
Sbjct: 44  LVSALGSCASSNDVTCGRQIHCRVLKSGLDSNGYICNSVLNMYAKCRLLADAESVFRDHA 103

Query: 288 ------------------RVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNR 329
                             R+ + +++F  + E++  ++  +IKG A      EA+ LF  
Sbjct: 104 KLDSASFNIMVDGYVRSRRLWDALKLFDVMPERSCVSYTTLIKGYAQNNQWSEAMELFRE 163

Query: 330 MEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLV----EGKYGFIPNVKHYACMVDL 385
           M   G+  +EVTL  V+SAC+H G +   R +    +    EG+     N+ H  C+   
Sbjct: 164 MRNLGIMLNEVTLATVISACSHLGGIWDCRMLQSLAIKLKLEGRVFVSTNLLHMYCLC-- 221

Query: 386 LARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVE 436
                 L++A ++   MP +     W  +L      G +E +E +  ++ E
Sbjct: 222 ----LCLKDARKLFDEMP-ERNLVTWNVMLNGYSKAGLIEQAEELFDQITE 267


>AT2G39620.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:16518968-16521478 REVERSE
           LENGTH=836
          Length = 836

 Score =  187 bits (474), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 114/393 (29%), Positives = 206/393 (52%), Gaps = 19/393 (4%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P      FN+L + ++     + +     ++ +M  + + P+  T   + ++ +    +
Sbjct: 462 LPIKDAVAFNALAQGYTQIGDANKAF---DVYKNMKLHGVCPDSRTMVGMLQTCAFCSDY 518

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMT-HRDVVSWTVMIM 211
           A+   V+  ++K G   + +V ++L+ ++     L +    LFD+    +  VSW +M+ 
Sbjct: 519 ARGSCVYGQIIKHGFDSECHVAHALINMFTKCDAL-AAAIVLFDKCGFEKSTVSWNIMMN 577

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
           G+   G+ ++A+  F QM+     PN VT VN + A A+  A+ +G  +H  + + G+  
Sbjct: 578 GYLLHGQAEEAVATFRQMKVEKFQPNAVTFVNIVRAAAELSALRVGMSVHSSLIQCGFCS 637

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRME 331
              +G +L+DMYAKCG +E   + F  +  K + +WN ++   A       A+ LF  M+
Sbjct: 638 QTPVGNSLVDMYAKCGMIESSEKCFIEISNKYIVSWNTMLSAYAAHGLASCAVSLFLSMQ 697

Query: 332 QDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGS 391
           ++ ++ D V+ L+VLSAC H+GLV+ G++IF  + E ++     V+HYACMVDLL ++G 
Sbjct: 698 ENELKPDSVSFLSVLSACRHAGLVEEGKRIFEEMGE-RHKIEAEVEHYACMVDLLGKAGL 756

Query: 392 LREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNL 451
             EA E+MR M    +  +WG+LL SS+   +L  S     +LV+LEP N ++Y     L
Sbjct: 757 FGEAVEMMRRMRVKTSVGVWGALLNSSRMHCNLWLSNAALCQLVKLEPLNPSHYSQDRRL 816

Query: 452 YAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEV 484
               G  ++V +++         K   CS +EV
Sbjct: 817 ----GEVNNVSRIK---------KVPACSWIEV 836



 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 143/301 (47%), Gaps = 6/301 (1%)

Query: 157 SVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNA 216
           ++H + ++ G + D+ V  SL+ +Y+    L  +  QLF  +  RDVVSW+ MI  +  A
Sbjct: 321 AIHDYAVQQGLIGDVSVATSLMSMYSKCGEL-EIAEQLFINIEDRDVVSWSAMIASYEQA 379

Query: 217 GKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLG 276
           G+ D+A+  F  M    + PN VT+ + L  CA   A  +G  IH +  +   E ++   
Sbjct: 380 GQHDEAISLFRDMMRIHIKPNAVTLTSVLQGCAGVAASRLGKSIHCYAIKADIESELETA 439

Query: 277 TALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVR 336
           TA+I MYAKCGR    ++ F  +  K+   +NA+ +G        +A  ++  M+  GV 
Sbjct: 440 TAVISMYAKCGRFSPALKAFERLPIKDAVAFNALAQGYTQIGDANKAFDVYKNMKLHGVC 499

Query: 337 ADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAF 396
            D  T++ +L  C        G  ++G ++  K+GF         ++++  +  +L  A 
Sbjct: 500 PDSRTMVGMLQTCAFCSDYARGSCVYGQII--KHGFDSECHVAHALINMFTKCDALAAAI 557

Query: 397 EVMRCMPFDPTKAMWGSLLVSSKSQGDLE--FSEFVARKLVELEPANSAYYVHLSNLYAE 454
            +     F+ +   W  ++      G  E   + F   K+ + +P N+  +V++    AE
Sbjct: 558 VLFDKCGFEKSTVSWNIMMNGYLLHGQAEEAVATFRQMKVEKFQP-NAVTFVNIVRAAAE 616

Query: 455 M 455
           +
Sbjct: 617 L 617



 Score =  115 bits (289), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 153/331 (46%), Gaps = 10/331 (3%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHM-HRNTILPNHYTFPFLFKSLSAPCH 151
           V  P V ++NS+IR ++ +  H  +L     F +M     I P+ Y+F F  K+ +    
Sbjct: 59  VRDPGVVLWNSMIRGYTRAGLHREAL---GFFGYMSEEKGIDPDKYSFTFALKACAGSMD 115

Query: 152 FAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIM 211
           F +   +H  + ++G   D+Y+  +L+ +Y  +  L S  RQ+FD+M  +DVV+W  M+ 
Sbjct: 116 FKKGLRIHDLIAEMGLESDVYIGTALVEMYCKARDLVS-ARQVFDKMHVKDVVTWNTMVS 174

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
           G    G    ALL F  M+   V  + V++ N + A +     ++   +H  + + G+  
Sbjct: 175 GLAQNGCSSAALLLFHDMRSCCVDIDHVSLYNLIPAVSKLEKSDVCRCLHGLVIKKGFIF 234

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRME 331
                + LIDMY  C  +     VF  V  K+  +W  ++   A     EE + LF+ M 
Sbjct: 235 --AFSSGLIDMYCNCADLYAAESVFEEVWRKDESSWGTMMAAYAHNGFFEEVLELFDLMR 292

Query: 332 QDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGS 391
              VR ++V   + L A  + G +  G  I  + V+   G I +V     ++ + ++ G 
Sbjct: 293 NYDVRMNKVAAASALQAAAYVGDLVKGIAIHDYAVQ--QGLIGDVSVATSLMSMYSKCGE 350

Query: 392 LREAFEVMRCMPFDPTKAMWGSLLVSSKSQG 422
           L  A ++   +  D     W +++ S +  G
Sbjct: 351 LEIAEQLFINIE-DRDVVSWSAMIASYEQAG 380



 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 7/253 (2%)

Query: 174 HNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQM-QYA 232
           HN L+  Y+   R   L R +FD +    VV W  MI G+  AG   +AL  F  M +  
Sbjct: 36  HNQLINAYSLFQRQ-DLSRVIFDSVRDPGVVLWNSMIRGYTRAGLHREALGFFGYMSEEK 94

Query: 233 GVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEG 292
           G+ P++ +   AL ACA S   + G  IHD I   G E DV +GTAL++MY K   +   
Sbjct: 95  GIDPDKYSFTFALKACAGSMDFKKGLRIHDLIAEMGLESDVYIGTALVEMYCKARDLVSA 154

Query: 293 VRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHS 352
            +VF  +  K+V TWN ++ GLA       A+ LF+ M    V  D V+L  ++ A +  
Sbjct: 155 RQVFDKMHVKDVVTWNTMVSGLAQNGCSSAALLLFHDMRSCCVDIDHVSLYNLIPAVSKL 214

Query: 353 GLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWG 412
              D+ R + G ++  K GFI      + ++D+      L  A  V     +   ++ WG
Sbjct: 215 EKSDVCRCLHGLVI--KKGFI--FAFSSGLIDMYCNCADLYAAESVFE-EVWRKDESSWG 269

Query: 413 SLLVSSKSQGDLE 425
           +++ +    G  E
Sbjct: 270 TMMAAYAHNGFFE 282



 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 147/312 (47%), Gaps = 8/312 (2%)

Query: 98  VFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQS 157
           V  +N+++   +    +  S   L +F  M    +  +H +   L  ++S        + 
Sbjct: 166 VVTWNTMVSGLAQ---NGCSSAALLLFHDMRSCCVDIDHVSLYNLIPAVSKLEKSDVCRC 222

Query: 158 VHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAG 217
           +H  V+K G +      + L+ +Y     L++    +F+E+  +D  SW  M+  + + G
Sbjct: 223 LHGLVIKKGFI--FAFSSGLIDMYCNCADLYA-AESVFEEVWRKDESSWGTMMAAYAHNG 279

Query: 218 KFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGT 277
            F++ L  F+ M+   V  N+V   +AL A A  G +  G  IHD+  + G   DV + T
Sbjct: 280 FFEEVLELFDLMRNYDVRMNKVAAASALQAAAYVGDLVKGIAIHDYAVQQGLIGDVSVAT 339

Query: 278 ALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRA 337
           +L+ MY+KCG +E   ++F ++++++V +W+A+I     A   +EAI LF  M +  ++ 
Sbjct: 340 SLMSMYSKCGELEIAEQLFINIEDRDVVSWSAMIASYEQAGQHDEAISLFRDMMRIHIKP 399

Query: 338 DEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFE 397
           + VTL +VL  C       +G+ I  + +  K      ++    ++ + A+ G    A +
Sbjct: 400 NAVTLTSVLQGCAGVAASRLGKSIHCYAI--KADIESELETATAVISMYAKCGRFSPALK 457

Query: 398 VMRCMPFDPTKA 409
               +P     A
Sbjct: 458 AFERLPIKDAVA 469


>AT2G46050.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr2:18939262-18941034 FORWARD
           LENGTH=590
          Length = 590

 Score =  186 bits (471), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 106/325 (32%), Positives = 172/325 (52%), Gaps = 3/325 (0%)

Query: 141 FLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTH 200
           F F SL + C   Q + +HA + K+ +  DI V  +LL +YA S  L S  R+ F+ M  
Sbjct: 246 FTFSSLLSACRIEQGKQIHAILFKVSYQFDIPVATALLNMYAKSNHL-SDARECFESMVV 304

Query: 201 RDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWI 260
           R+VVSW  MI+GF   G+  +A+  F QM    + P+ +T  + L++CA   A+     +
Sbjct: 305 RNVVSWNAMIVGFAQNGEGREAMRLFGQMLLENLQPDELTFASVLSSCAKFSAIWEIKQV 364

Query: 261 HDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSG 320
              + + G    + +  +LI  Y++ G + E +  F S++E ++ +W +VI  LA     
Sbjct: 365 QAMVTKKGSADFLSVANSLISSYSRNGNLSEALLCFHSIREPDLVSWTSVIGALASHGFA 424

Query: 321 EEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYA 380
           EE++++F  M Q  ++ D++T L VLSAC+H GLV  G + F  + E  Y      +HY 
Sbjct: 425 EESLQMFESMLQK-LQPDKITFLEVLSACSHGGLVQEGLRCFKRMTEF-YKIEAEDEHYT 482

Query: 381 CMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPA 440
           C++DLL R+G + EA +V+  MP +P+     +           E  ++ A+KL+E+EP 
Sbjct: 483 CLIDLLGRAGFIDEASDVLNSMPTEPSTHALAAFTGGCNIHEKRESMKWGAKKLLEIEPT 542

Query: 441 NSAYYVHLSNLYAEMGRWDDVEKVR 465
               Y  LSN Y   G W+    +R
Sbjct: 543 KPVNYSILSNAYVSEGHWNQAALLR 567



 Score =  111 bits (277), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 155/330 (46%), Gaps = 18/330 (5%)

Query: 151 HFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMI 210
           H +  +  H  ++K G  + +++ N LL  Y    R F    +LFDEM  R++V+W ++I
Sbjct: 51  HLSDVKQEHGFMVKQGIYNSLFLQNKLLQAYT-KIREFDDADKLFDEMPLRNIVTWNILI 109

Query: 211 MGF--RNAGKFDDALLAF---EQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIR 265
            G   R+      A L F    ++ +  V+ + V+ +  +  C DS  ++ G  +H  + 
Sbjct: 110 HGVIQRDGDTNHRAHLGFCYLSRILFTDVSLDHVSFMGLIRLCTDSTNMKAGIQLHCLMV 169

Query: 266 RNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIR 325
           + G E      T+L+  Y KCG + E  RVF +V ++++  WNA++    L    +EA  
Sbjct: 170 KQGLESSCFPSTSLVHFYGKCGLIVEARRVFEAVLDRDLVLWNALVSSYVLNGMIDEAFG 229

Query: 326 LFNRMEQDG--VRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMV 383
           L   M  D    R D  T  ++LSAC     ++ G+QI   L +  Y F  ++     ++
Sbjct: 230 LLKLMGSDKNRFRGDYFTFSSLLSACR----IEQGKQIHAILFKVSYQF--DIPVATALL 283

Query: 384 DLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGD-LEFSEFVARKLVE-LEPAN 441
           ++ A+S  L +A E    M      + W +++V     G+  E      + L+E L+P  
Sbjct: 284 NMYAKSNHLSDARECFESMVVRNVVS-WNAMIVGFAQNGEGREAMRLFGQMLLENLQPDE 342

Query: 442 SAYYVHLSNLYAEMGRWDDVEKVRGMMKDR 471
             +   LS+       W ++++V+ M+  +
Sbjct: 343 LTFASVLSSCAKFSAIW-EIKQVQAMVTKK 371


>AT1G71420.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:26917822-26920059 REVERSE
           LENGTH=745
          Length = 745

 Score =  182 bits (461), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 117/401 (29%), Positives = 206/401 (51%), Gaps = 16/401 (3%)

Query: 97  HVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQ 156
           ++  +NS+I AF   +    ++    +F  MH + +  +  T   +  SL         +
Sbjct: 225 NLVTWNSMIAAFQCCNLGKKAI---GVFMRMHSDGVGFDRATLLNICSSLYKSSDLVPNE 281

Query: 157 ------SVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTH-RDVVSWTVM 209
                  +H+  +K G +    V  +L+ VY+     ++ C +LF EM+H RD+V+W  +
Sbjct: 282 VSKCCLQLHSLTVKSGLVTQTEVATALIKVYSEMLEDYTDCYKLFMEMSHCRDIVAWNGI 341

Query: 210 IMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGW 269
           I  F      + A+  F Q++   ++P+  T  + L ACA          IH  + + G+
Sbjct: 342 ITAFAVYDP-ERAIHLFGQLRQEKLSPDWYTFSSVLKACAGLVTARHALSIHAQVIKGGF 400

Query: 270 ELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNR 329
             D VL  +LI  YAKCG ++  +RVF  +  ++V +WN+++K  +L    +  + +F +
Sbjct: 401 LADTVLNNSLIHAYAKCGSLDLCMRVFDDMDSRDVVSWNSMLKAYSLHGQVDSILPVFQK 460

Query: 330 MEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARS 389
           M+   +  D  T +A+LSAC+H+G V+ G +IF  + E K   +P + HYAC++D+L+R+
Sbjct: 461 MD---INPDSATFIALLSACSHAGRVEEGLRIFRSMFE-KPETLPQLNHYACVIDMLSRA 516

Query: 390 GSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVEL-EPANSAYYVHL 448
               EA EV++ MP DP   +W +LL S +  G+    +  A KL EL EP NS  Y+ +
Sbjct: 517 ERFAEAEEVIKQMPMDPDAVVWIALLGSCRKHGNTRLGKLAADKLKELVEPTNSMSYIQM 576

Query: 449 SNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
           SN+Y   G +++       M+  ++ K+   S  E+  + H
Sbjct: 577 SNIYNAEGSFNEANLSIKEMETWRVRKEPDLSWTEIGNKVH 617



 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 107/221 (48%), Gaps = 11/221 (4%)

Query: 133 LPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLH--DIYVHNSLLGVYAASPRLFSL 190
           L +   +  LF++ +   +     ++H H+L   + +  ++ + N L+ +YA    +   
Sbjct: 56  LQSQQAYAALFQACAEQRNLLDGINLHHHMLSHPYCYSQNVILANFLINMYAKCGNIL-Y 114

Query: 191 CRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACAD 250
            RQ+FD M  R+VVSWT +I G+  AG   +    F  M  +   PN  T+ + L +C  
Sbjct: 115 ARQVFDTMPERNVVSWTALITGYVQAGNEQEGFCLFSSM-LSHCFPNEFTLSSVLTSCR- 172

Query: 251 SGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKC---GRVEEGVRVFSSVKEKNVFTW 307
               E G  +H    + G    + +  A+I MY +C       E   VF ++K KN+ TW
Sbjct: 173 ---YEPGKQVHGLALKLGLHCSIYVANAVISMYGRCHDGAAAYEAWTVFEAIKFKNLVTW 229

Query: 308 NAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSA 348
           N++I        G++AI +F RM  DGV  D  TLL + S+
Sbjct: 230 NSMIAAFQCCNLGKKAIGVFMRMHSDGVGFDRATLLNICSS 270



 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 90/386 (23%), Positives = 172/386 (44%), Gaps = 40/386 (10%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P  +V  + +LI  +  +    N      +F+ M  +   PN +T   +  S    C +
Sbjct: 122 MPERNVVSWTALITGYVQAG---NEQEGFCLFSSMLSHC-FPNEFTLSSVLTS----CRY 173

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVY------AASPRLFSLCRQLFDEMTHRDVVSW 206
              + VH   LKLG    IYV N+++ +Y      AA+   ++    +F+ +  +++V+W
Sbjct: 174 EPGKQVHGLALKLGLHCSIYVANAVISMYGRCHDGAAAYEAWT----VFEAIKFKNLVTW 229

Query: 207 TVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAV------EMGAWI 260
             MI  F+       A+  F +M   GV  +R T++N  ++   S  +      +    +
Sbjct: 230 NSMIAAFQCCNLGKKAIGVFMRMHSDGVGFDRATLLNICSSLYKSSDLVPNEVSKCCLQL 289

Query: 261 HDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKE----KNVFTWNAVIKGLAL 316
           H    ++G      + TALI +Y++   +E+    +    E    +++  WN +I   A+
Sbjct: 290 HSLTVKSGLVTQTEVATALIKVYSE--MLEDYTDCYKLFMEMSHCRDIVAWNGIITAFAV 347

Query: 317 AKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDM--GRQIFGFLVEGKYGFIP 374
               E AI LF ++ Q+ +  D  T  +VL AC  +GLV       I   +++G  GF+ 
Sbjct: 348 YDP-ERAIHLFGQLRQEKLSPDWYTFSSVLKAC--AGLVTARHALSIHAQVIKG--GFLA 402

Query: 375 NVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKL 434
           +      ++   A+ GSL     V   M      + W S+L +    G ++    V +K+
Sbjct: 403 DTVLNNSLIHAYAKCGSLDLCMRVFDDMDSRDVVS-WNSMLKAYSLHGQVDSILPVFQKM 461

Query: 435 VELEPANSAYYVHLSNLYAEMGRWDD 460
            ++ P +SA ++ L +  +  GR ++
Sbjct: 462 -DINP-DSATFIALLSACSHAGRVEE 485



 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 75/149 (50%), Gaps = 11/149 (7%)

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRME 331
           +V+L   LI+MYAKCG +    +VF ++ E+NV +W A+I G   A + +E   LF+ M 
Sbjct: 95  NVILANFLINMYAKCGNILYARQVFDTMPERNVVSWTALITGYVQAGNEQEGFCLFSSML 154

Query: 332 QDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLAR--- 388
                 +E TL +VL++C +    + G+Q+ G  +  K G   ++     ++ +  R   
Sbjct: 155 SHCF-PNEFTLSSVLTSCRY----EPGKQVHGLAL--KLGLHCSIYVANAVISMYGRCHD 207

Query: 389 SGSLREAFEVMRCMPFDPTKAMWGSLLVS 417
             +  EA+ V   + F      W S++ +
Sbjct: 208 GAAAYEAWTVFEAIKFK-NLVTWNSMIAA 235


>AT5G39680.1 | Symbols: EMB2744 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:15884236-15886368 REVERSE
           LENGTH=710
          Length = 710

 Score =  181 bits (460), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 181/336 (53%), Gaps = 2/336 (0%)

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFR 214
           A  VH+ +++ G   ++    +L+ +Y    ++    +++FD+   +++   T ++  + 
Sbjct: 256 ALQVHSRMVRFGFNAEVEACGALINMYGKCGKVL-YAQRVFDDTHAQNIFLNTTIMDAYF 314

Query: 215 NAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVV 274
               F++AL  F +M    V PN  T    L + A+   ++ G  +H  + ++G+   V+
Sbjct: 315 QDKSFEEALNLFSKMDTKEVPPNEYTFAILLNSIAELSLLKQGDLLHGLVLKSGYRNHVM 374

Query: 275 LGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDG 334
           +G AL++MYAK G +E+  + FS +  +++ TWN +I G +    G EA+  F+RM   G
Sbjct: 375 VGNALVNMYAKSGSIEDARKAFSGMTFRDIVTWNTMISGCSHHGLGREALEAFDRMIFTG 434

Query: 335 VRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLRE 394
              + +T + VL AC+H G V+ G   F  L++ K+   P+++HY C+V LL+++G  ++
Sbjct: 435 EIPNRITFIGVLQACSHIGFVEQGLHYFNQLMK-KFDVQPDIQHYTCIVGLLSKAGMFKD 493

Query: 395 AFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAE 454
           A + MR  P +     W +LL +   + +    + VA   +E  P +S  YV LSN++A+
Sbjct: 494 AEDFMRTAPIEWDVVAWRTLLNACYVRRNYRLGKKVAEYAIEKYPNDSGVYVLLSNIHAK 553

Query: 455 MGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGHT 490
              W+ V KVR +M +R + K+ G S + +  Q H 
Sbjct: 554 SREWEGVAKVRSLMNNRGVKKEPGVSWIGIRNQTHV 589



 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 100/195 (51%), Gaps = 3/195 (1%)

Query: 121 LSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGV 180
           L++F+ M    + PN YTF  L  S++      Q   +H  VLK G+ + + V N+L+ +
Sbjct: 323 LNLFSKMDTKEVPPNEYTFAILLNSIAELSLLKQGDLLHGLVLKSGYRNHVMVGNALVNM 382

Query: 181 YAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVT 240
           YA S  +    R+ F  MT RD+V+W  MI G  + G   +AL AF++M + G  PNR+T
Sbjct: 383 YAKSGSIED-ARKAFSGMTFRDIVTWNTMISGCSHHGLGREALEAFDRMIFTGEIPNRIT 441

Query: 241 MVNALAACADSGAVEMGA-WIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSV 299
            +  L AC+  G VE G  + +  +++   + D+   T ++ + +K G  ++      + 
Sbjct: 442 FIGVLQACSHIGFVEQGLHYFNQLMKKFDVQPDIQHYTCIVGLLSKAGMFKDAEDFMRTA 501

Query: 300 K-EKNVFTWNAVIKG 313
             E +V  W  ++  
Sbjct: 502 PIEWDVVAWRTLLNA 516



 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 135/295 (45%), Gaps = 16/295 (5%)

Query: 134 PNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCR- 192
           PN +    +FKS S      + +  H   LK G +   +V N+L+ +Y       SLC  
Sbjct: 134 PNEFVATVVFKSCSNSGRIEEGKQFHGCFLKYGLISHEFVRNTLVYMY-------SLCSG 186

Query: 193 -----QLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAA 247
                ++ D++ + D+  ++  + G+   G F + L    +        N +T +++L  
Sbjct: 187 NGEAIRVLDDLPYCDLSVFSSALSGYLECGAFKEGLDVLRKTANEDFVWNNLTYLSSLRL 246

Query: 248 CADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTW 307
            ++   + +   +H  + R G+  +V    ALI+MY KCG+V    RVF     +N+F  
Sbjct: 247 FSNLRDLNLALQVHSRMVRFGFNAEVEACGALINMYGKCGKVLYAQRVFDDTHAQNIFLN 306

Query: 308 NAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVE 367
             ++      KS EEA+ LF++M+   V  +E T   +L++     L+  G  + G ++ 
Sbjct: 307 TTIMDAYFQDKSFEEALNLFSKMDTKEVPPNEYTFAILLNSIAELSLLKQGDLLHGLVL- 365

Query: 368 GKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQG 422
            K G+  +V     +V++ A+SGS+ +A +    M F      W +++      G
Sbjct: 366 -KSGYRNHVMVGNALVNMYAKSGSIEDARKAFSGMTFRDI-VTWNTMISGCSHHG 418



 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 131/290 (45%), Gaps = 19/290 (6%)

Query: 131 TILPNHYTFPF-------LFKSLSAPCHFAQAQSVHAHVL---KLGHLHDIYVHNSLLGV 180
           +++P     PF       L K  +   +    +S+HAH++   +     D Y  NSL+ +
Sbjct: 19  SLVPKSKKTPFPIDRLNELLKVCANSSYLRIGESIHAHLIVTNQSSRAEDAYQINSLINL 78

Query: 181 YAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVA-PNRV 239
           Y    R     R+LFD M  R+VVSW  M+ G++N+G   + L  F+ M ++G + PN  
Sbjct: 79  YVKC-RETVRARKLFDLMPERNVVSWCAMMKGYQNSGFDFEVLKLFKSMFFSGESRPNEF 137

Query: 240 TMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSV 299
                  +C++SG +E G   H    + G      +   L+ MY+ C    E +RV   +
Sbjct: 138 VATVVFKSCSNSGRIEEGKQFHGCFLKYGLISHEFVRNTLVYMYSLCSGNGEAIRVLDDL 197

Query: 300 KEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGR 359
              ++  +++ + G     + +E + +  +   +    + +T L+ L   ++   +++  
Sbjct: 198 PYCDLSVFSSALSGYLECGAFKEGLDVLRKTANEDFVWNNLTYLSSLRLFSNLRDLNLAL 257

Query: 360 QIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKA 409
           Q+   +V  ++GF   V+    ++++  + G +  A  V     FD T A
Sbjct: 258 QVHSRMV--RFGFNAEVEACGALINMYGKCGKVLYAQRV-----FDDTHA 300


>AT4G19220.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:10505266-10508121 REVERSE
           LENGTH=932
          Length = 932

 Score =  181 bits (459), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 113/389 (29%), Positives = 199/389 (51%), Gaps = 16/389 (4%)

Query: 101 FNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFA---QAQS 157
           +NS+I   + S HH   L  L  F  M R   +   +    L  ++SA  +     Q + 
Sbjct: 548 WNSVISGCASSGHH---LESLRAFQAMSREGKI--RHDLITLLGTISASGNLGLVLQGRC 602

Query: 158 VHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAG 217
            H   +K     D  + N+L+ +Y     + S  + +F  ++  ++ SW  +I       
Sbjct: 603 FHGLAIKSLRELDTQLQNTLITMYGRCKDIESAVK-VFGLISDPNLCSWNCVISALSQNK 661

Query: 218 KFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGT 277
              +    F  ++   + PN +T V  L+A    G+   G   H  + R G++ +  +  
Sbjct: 662 AGREVFQLFRNLK---LEPNEITFVGLLSASTQLGSTSYGMQAHCHLIRRGFQANPFVSA 718

Query: 278 ALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDG-VR 336
           AL+DMY+ CG +E G++VF +    ++  WN+VI        GE+A+ LF  +  +  + 
Sbjct: 719 ALVDMYSSCGMLETGMKVFRNSGVNSISAWNSVISAHGFHGMGEKAMELFKELSSNSEME 778

Query: 337 ADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAF 396
            ++ + +++LSAC+HSG +D G   +  + E K+G  P  +H   +VD+L R+G LREA+
Sbjct: 779 PNKSSFISLLSACSHSGFIDEGLSYYKQMEE-KFGVKPVTEHRVWIVDMLGRAGKLREAY 837

Query: 397 EVMRCMPFDPTKA-MWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEM 455
           E +  +  +P KA +WG+LL +    GD +  + VA  L E+EP N++YY+ L+N Y  +
Sbjct: 838 EFITGIG-EPQKAGVWGALLSACNYHGDTKLGKEVAEVLFEMEPDNASYYISLANTYVGL 896

Query: 456 GRWDDVEKVRGMMKDRQLTKDLGCSSVEV 484
           G W++  ++R M++D  L K  G S ++V
Sbjct: 897 GGWEEAVRLRKMVEDNALKKLPGYSVIDV 925



 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 139/299 (46%), Gaps = 29/299 (9%)

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFR 214
            +SVH  + KLG L   ++            RL ++          RD+ SW  +I G  
Sbjct: 516 GKSVHCWLQKLGDLTSAFL------------RLETMSET-------RDLTSWNSVISGCA 556

Query: 215 NAGKFDDALLAFEQMQYAG-VAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDV 273
           ++G   ++L AF+ M   G +  + +T++  ++A  + G V  G   H    ++  ELD 
Sbjct: 557 SSGHHLESLRAFQAMSREGKIRHDLITLLGTISASGNLGLVLQGRCFHGLAIKSLRELDT 616

Query: 274 VLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQD 333
            L   LI MY +C  +E  V+VF  + + N+ +WN VI  L+  K+G E  +LF  ++  
Sbjct: 617 QLQNTLITMYGRCKDIESAVKVFGLISDPNLCSWNCVISALSQNKAGREVFQLFRNLK-- 674

Query: 334 GVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLR 393
            +  +E+T + +LSA    G    G Q    L+  + GF  N    A +VD+ +  G L 
Sbjct: 675 -LEPNEITFVGLLSASTQLGSTSYGMQAHCHLI--RRGFQANPFVSAALVDMYSSCGMLE 731

Query: 394 EAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKL---VELEPANSAYYVHLS 449
              +V R    +   A W S++ +    G  E +  + ++L    E+EP  S++   LS
Sbjct: 732 TGMKVFRNSGVNSISA-WNSVISAHGFHGMGEKAMELFKELSSNSEMEPNKSSFISLLS 789



 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 107/212 (50%), Gaps = 4/212 (1%)

Query: 158 VHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAG 217
           +H   ++ G + D  + N+L+ +YA    L S    +F  M HRD+VSW  ++      G
Sbjct: 210 LHCLAIETGLVGDSSLCNALMNLYAKGENLSS-AECVFTHMEHRDIVSWNTIMTKCLANG 268

Query: 218 KFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGW--ELDVVL 275
               +L  F+ M  +G   + VT    ++AC+    + +G  +H  + ++G+  E  V +
Sbjct: 269 HPRKSLQYFKSMTGSGQEADTVTFSCVISACSSIEELTLGESLHGLVIKSGYSPEAHVSV 328

Query: 276 GTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQ-DG 334
           G ++I MY+KCG  E    VF  +  ++V + NA++ G A     EEA  + N+M+  D 
Sbjct: 329 GNSIISMYSKCGDTEAAETVFEELVCRDVISSNAILNGFAANGMFEEAFGILNQMQSVDK 388

Query: 335 VRADEVTLLAVLSACNHSGLVDMGRQIFGFLV 366
           ++ D  T++++ S C        GR + G+ V
Sbjct: 389 IQPDIATVVSITSICGDLSFSREGRAVHGYTV 420



 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 117/258 (45%), Gaps = 4/258 (1%)

Query: 156 QSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRN 215
           +SVH   LK G L D+   + LL  Y  +  L S    LFDE+  +DV+ W  MI     
Sbjct: 107 RSVHCFALKCGLLQDLATSSKLLTFYGRTGELVS-SSCLFDELKEKDVIVWNSMITALNQ 165

Query: 216 AGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVL 275
            G++  A+  F +M + G   +  T++ A +A +        + +H      G   D  L
Sbjct: 166 NGRYIAAVGLFIEMIHKGNEFDSTTLLLAASALSSLHLSRKCSMLHCLAIETGLVGDSSL 225

Query: 276 GTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGV 335
             AL+++YAK   +     VF+ ++ +++ +WN ++          ++++ F  M   G 
Sbjct: 226 CNALMNLYAKGENLSSAECVFTHMEHRDIVSWNTIMTKCLANGHPRKSLQYFKSMTGSGQ 285

Query: 336 RADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREA 395
            AD VT   V+SAC+    + +G  + G +++  Y    +V     ++ + ++ G    A
Sbjct: 286 EADTVTFSCVISACSSIEELTLGESLHGLVIKSGYSPEAHVSVGNSIISMYSKCGDTEAA 345

Query: 396 ---FEVMRCMPFDPTKAM 410
              FE + C     + A+
Sbjct: 346 ETVFEELVCRDVISSNAI 363



 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 118/253 (46%), Gaps = 11/253 (4%)

Query: 121 LSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHD--IYVHNSLL 178
           L  F  M  +    +  TF  +  + S+       +S+H  V+K G+  +  + V NS++
Sbjct: 274 LQYFKSMTGSGQEADTVTFSCVISACSSIEELTLGESLHGLVIKSGYSPEAHVSVGNSII 333

Query: 179 GVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAG-VAPN 237
            +Y+           +F+E+  RDV+S   ++ GF   G F++A     QMQ    + P+
Sbjct: 334 SMYSKCGDT-EAAETVFEELVCRDVISSNAILNGFAANGMFEEAFGILNQMQSVDKIQPD 392

Query: 238 RVTMVNALAACADSGAVEMGAWIHDFIRR---NGWELDVVLGTALIDMYAKCGRVEEGVR 294
             T+V+  + C D      G  +H +  R       L+V+   ++IDMY KCG   +   
Sbjct: 393 IATVVSITSICGDLSFSREGRAVHGYTVRMEMQSRALEVI--NSVIDMYGKCGLTTQAEL 450

Query: 295 VFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRM--EQDGVRADEVTLLAVLSACNHS 352
           +F +   +++ +WN++I   +      +A  LF  +  E    +    T+LA+L++C+ S
Sbjct: 451 LFKTTTHRDLVSWNSMISAFSQNGFTHKAKNLFKEVVSEYSCSKFSLSTVLAILTSCDSS 510

Query: 353 GLVDMGRQIFGFL 365
             +  G+ +  +L
Sbjct: 511 DSLIFGKSVHCWL 523


>AT2G36980.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:15531161-15533038 FORWARD
           LENGTH=625
          Length = 625

 Score =  181 bits (459), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 124/434 (28%), Positives = 198/434 (45%), Gaps = 41/434 (9%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSL-TPLSIFAHMHRNTILPNHYTFPFLFKSLSA-PC 150
           +P+   F +N +I      H H   L + LS+F  M  +   P+ YTF  L  + SA   
Sbjct: 164 MPKRVAFAWNIMISG----HAHCGKLESCLSLFKEMLESEFKPDCYTFSSLMNACSADSS 219

Query: 151 HFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQL---------------- 194
           +    + VHA +LK G    +   NS+L  Y          R+L                
Sbjct: 220 NVVYGRMVHAVMLKNGWSSAVEAKNSVLSFYTKLGSRDDAMRELESIEVLTQVSWNSIID 279

Query: 195 --------------FDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVT 240
                         F     +++V+WT MI G+   G  + AL  F +M  +GV  +   
Sbjct: 280 ACMKIGETEKALEVFHLAPEKNIVTWTTMITGYGRNGDGEQALRFFVEMMKSGVDSDHFA 339

Query: 241 MVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVK 300
               L AC+    +  G  IH  +   G++    +G AL+++YAKCG ++E  R F  + 
Sbjct: 340 YGAVLHACSGLALLGHGKMIHGCLIHCGFQGYAYVGNALVNLYAKCGDIKEADRAFGDIA 399

Query: 301 EKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQ 360
            K++ +WN ++    +    ++A++L++ M   G++ D VT + +L+ C+HSGLV+ G  
Sbjct: 400 NKDLVSWNTMLFAFGVHGLADQALKLYDNMIASGIKPDNVTFIGLLTTCSHSGLVEEGCM 459

Query: 361 IFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRC----MPFDPTKAMWGSLLV 416
           IF  +V+  Y     V H  CM+D+  R G L EA ++       +      + W +LL 
Sbjct: 460 IFESMVK-DYRIPLEVDHVTCMIDMFGRGGHLAEAKDLATTYSSLVTDSSNNSSWETLLG 518

Query: 417 SSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKD 476
           +  +    E    V++ L   EP+    +V LSNLY   GRW + E VR  M +R + K 
Sbjct: 519 ACSTHWHTELGREVSKVLKIAEPSEEMSFVLLSNLYCSTGRWKEGEDVRREMVERGMKKT 578

Query: 477 LGCSSVEVEEQGHT 490
            GCS +EV  Q  T
Sbjct: 579 PGCSWIEVGNQVST 592



 Score =  109 bits (272), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 155/370 (41%), Gaps = 75/370 (20%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P      +N+++ ++S    H  ++   ++F  +  +   P+ Y+F  +  + ++  + 
Sbjct: 30  MPELDTVAWNTMLTSYSRLGLHQEAI---ALFTQLRFSDAKPDDYSFTAILSTCASLGNV 86

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYA------ASPRLF-----------SLCRQLF 195
              + + + V++ G    + V+NSL+ +Y       ++ ++F           + C  LF
Sbjct: 87  KFGRKIQSLVIRSGFCASLPVNNSLIDMYGKCSDTLSANKVFRDMCCDSRNEVTWCSLLF 146

Query: 196 D---------------EMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVT 240
                           EM  R   +W +MI G  + GK +  L  F++M  +   P+  T
Sbjct: 147 AYMNAEQFEAALDVFVEMPKRVAFAWNIMISGHAHCGKLESCLSLFKEMLESEFKPDCYT 206

Query: 241 MVNALAAC-ADSGAVEMGAWIHDFIRRNGWE----------------------------- 270
             + + AC ADS  V  G  +H  + +NGW                              
Sbjct: 207 FSSLMNACSADSSNVVYGRMVHAVMLKNGWSSAVEAKNSVLSFYTKLGSRDDAMRELESI 266

Query: 271 --LDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFN 328
             L  V   ++ID   K G  E+ + VF    EKN+ TW  +I G      GE+A+R F 
Sbjct: 267 EVLTQVSWNSIIDACMKIGETEKALEVFHLAPEKNIVTWTTMITGYGRNGDGEQALRFFV 326

Query: 329 RMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVE---GKYGFIPNVKHYACMVDL 385
            M + GV +D     AVL AC+   L+  G+ I G L+      Y ++ N      +V+L
Sbjct: 327 EMMKSGVDSDHFAYGAVLHACSGLALLGHGKMIHGCLIHCGFQGYAYVGNA-----LVNL 381

Query: 386 LARSGSLREA 395
            A+ G ++EA
Sbjct: 382 YAKCGDIKEA 391



 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 119/284 (41%), Gaps = 38/284 (13%)

Query: 176 SLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVA 235
           S +   A S R+ S  RQ+FD M   D V+W  M+  +   G   +A+  F Q++++   
Sbjct: 9   SKIASLAKSGRIAS-ARQVFDGMPELDTVAWNTMLTSYSRLGLHQEAIALFTQLRFSDAK 67

Query: 236 PNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCG-------- 287
           P+  +    L+ CA  G V+ G  I   + R+G+   + +  +LIDMY KC         
Sbjct: 68  PDDYSFTAILSTCASLGNVKFGRKIQSLVIRSGFCASLPVNNSLIDMYGKCSDTLSANKV 127

Query: 288 -------------------------RVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEE 322
                                    + E  + VF  + ++  F WN +I G A     E 
Sbjct: 128 FRDMCCDSRNEVTWCSLLFAYMNAEQFEAALDVFVEMPKRVAFAWNIMISGHAHCGKLES 187

Query: 323 AIRLFNRMEQDGVRADEVTLLAVLSACN-HSGLVDMGRQIFGFLVEGKYGFIPNVKHYAC 381
            + LF  M +   + D  T  ++++AC+  S  V  GR +   ++  K G+   V+    
Sbjct: 188 CLSLFKEMLESEFKPDCYTFSSLMNACSADSSNVVYGRMVHAVML--KNGWSSAVEAKNS 245

Query: 382 MVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLE 425
           ++    + GS  +A   +  +    T+  W S++ +    G+ E
Sbjct: 246 VLSFYTKLGSRDDAMRELESIEV-LTQVSWNSIIDACMKIGETE 288



 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 3/140 (2%)

Query: 277 TALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVR 336
           T+ I   AK GR+    +VF  + E +   WN ++   +     +EAI LF ++     +
Sbjct: 8   TSKIASLAKSGRIASARQVFDGMPELDTVAWNTMLTSYSRLGLHQEAIALFTQLRFSDAK 67

Query: 337 ADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAF 396
            D+ +  A+LS C   G V  GR+I   ++  + GF  ++     ++D+  +      A 
Sbjct: 68  PDDYSFTAILSTCASLGNVKFGRKIQSLVI--RSGFCASLPVNNSLIDMYGKCSDTLSAN 125

Query: 397 EVMRCMPFDP-TKAMWGSLL 415
           +V R M  D   +  W SLL
Sbjct: 126 KVFRDMCCDSRNEVTWCSLL 145


>AT2G02750.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:771641-773482 REVERSE
           LENGTH=613
          Length = 613

 Score =  180 bits (457), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 131/427 (30%), Positives = 203/427 (47%), Gaps = 45/427 (10%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHR-NTILPNHYTFPFLFKSLSAPCH 151
           VP   V  +N+ I     +   +  L P S+F  M + ++  PN  TF     + ++  +
Sbjct: 190 VPHKSVVTYNAFISGLMENGVMN--LVP-SVFNLMRKFSSEEPNDVTFVNAITACASLLN 246

Query: 152 FAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTH-RDVVSWTVMI 210
               + +H  V+K     +  V  +L+ +Y+   R +     +F E+   R+++SW  +I
Sbjct: 247 LQYGRQLHGLVMKKEFQFETMVGTALIDMYSKC-RCWKSAYIVFTELKDTRNLISWNSVI 305

Query: 211 MGFRNAGKFDDALLAFEQMQYAGVAPNRVT------------------------------ 240
            G    G+ + A+  FE++   G+ P+  T                              
Sbjct: 306 SGMMINGQHETAVELFEKLDSEGLKPDSATWNSLISGFSQLGKVIEAFKFFERMLSVVMV 365

Query: 241 -----MVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRV 295
                + + L+AC+D   ++ G  IH  + +   E D+ + T+LIDMY KCG      R+
Sbjct: 366 PSLKCLTSLLSACSDIWTLKNGKEIHGHVIKAAAERDIFVLTSLIDMYMKCGLSSWARRI 425

Query: 296 FSSV--KEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSG 353
           F     K K+   WN +I G       E AI +F  + ++ V     T  AVLSAC+H G
Sbjct: 426 FDRFEPKPKDPVFWNVMISGYGKHGECESAIEIFELLREEKVEPSLATFTAVLSACSHCG 485

Query: 354 LVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGS 413
            V+ G QIF  + E +YG+ P+ +H  CM+DLL RSG LREA EV+  M    +     S
Sbjct: 486 NVEKGSQIFRLMQE-EYGYKPSTEHIGCMIDLLGRSGRLREAKEVIDQMSEPSSSVY-SS 543

Query: 414 LLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQL 473
           LL S +   D    E  A KL ELEP N A +V LS++YA + RW+DVE +R ++  +QL
Sbjct: 544 LLGSCRQHLDPVLGEEAAMKLAELEPENPAPFVILSSIYAALERWEDVESIRQVIDQKQL 603

Query: 474 TKDLGCS 480
            K  G S
Sbjct: 604 VKLPGLS 610



 Score =  121 bits (304), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 156/327 (47%), Gaps = 10/327 (3%)

Query: 134 PNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQ 193
           PN +TFP L KS +      Q + +HA V+K G   D++   +L+ +Y    ++    + 
Sbjct: 29  PNKFTFPPLLKSCAKLGDVVQGRILHAQVVKTGFFVDVFTATALVSMYMKVKQVTDALKV 88

Query: 194 LFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGA 253
           L DEM  R + S    + G    G   DA   F   + +G   N VT+ + L  C D   
Sbjct: 89  L-DEMPERGIASVNAAVSGLLENGFCRDAFRMFGDARVSGSGMNSVTVASVLGGCGD--- 144

Query: 254 VEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKG 313
           +E G  +H    ++G+E++V +GT+L+ MY++CG      R+F  V  K+V T+NA I G
Sbjct: 145 IEGGMQLHCLAMKSGFEMEVYVGTSLVSMYSRCGEWVLAARMFEKVPHKSVVTYNAFISG 204

Query: 314 LALAKSGEEAIRLFNRMEQ-DGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGF 372
           L           +FN M +      ++VT +  ++AC     +  GRQ+ G +++ ++ F
Sbjct: 205 LMENGVMNLVPSVFNLMRKFSSEEPNDVTFVNAITACASLLNLQYGRQLHGLVMKKEFQF 264

Query: 373 IPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVAR 432
              V     ++D+ ++    + A+ V   +        W S++      G  E +  +  
Sbjct: 265 ETMVG--TALIDMYSKCRCWKSAYIVFTELKDTRNLISWNSVISGMMINGQHETAVELFE 322

Query: 433 KLVE--LEPANSAYYVHLSNLYAEMGR 457
           KL    L+P +SA +  L + ++++G+
Sbjct: 323 KLDSEGLKP-DSATWNSLISGFSQLGK 348



 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 75/156 (48%), Gaps = 5/156 (3%)

Query: 235 APNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVR 294
           +PN+ T    L +CA  G V  G  +H  + + G+ +DV   TAL+ MY K  +V + ++
Sbjct: 28  SPNKFTFPPLLKSCAKLGDVVQGRILHAQVVKTGFFVDVFTATALVSMYMKVKQVTDALK 87

Query: 295 VFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGL 354
           V   + E+ + + NA + GL       +A R+F      G   + VT+ +VL  C   G 
Sbjct: 88  VLDEMPERGIASVNAAVSGLLENGFCRDAFRMFGDARVSGSGMNSVTVASVLGGC---GD 144

Query: 355 VDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSG 390
           ++ G Q+    +  K GF   V     +V + +R G
Sbjct: 145 IEGGMQLHCLAM--KSGFEMEVYVGTSLVSMYSRCG 178


>AT1G62260.1 | Symbols: MEF9 | mitochondrial editing factor 9 |
           chr1:22997826-22999796 REVERSE LENGTH=656
          Length = 656

 Score =  179 bits (453), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 98/316 (31%), Positives = 172/316 (54%), Gaps = 4/316 (1%)

Query: 169 HDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQ 228
            D +  N ++  YA+   +  L R  F++   +  VSW  +I  +     + +A+  F +
Sbjct: 341 RDAHSWNMMVSGYASVGNV-ELARHYFEKTPEKHTVSWNSIIAAYEKNKDYKEAVDLFIR 399

Query: 229 MQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGR 288
           M   G  P+  T+ + L+A      + +G  +H  + +     DV +  ALI MY++CG 
Sbjct: 400 MNIEGEKPDPHTLTSLLSASTGLVNLRLGMQMHQIVVKTVIP-DVPVHNALITMYSRCGE 458

Query: 289 VEEGVRVFSSVK-EKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLS 347
           + E  R+F  +K ++ V TWNA+I G A   +  EA+ LF  M+ +G+    +T ++VL+
Sbjct: 459 IMESRRIFDEMKLKREVITWNAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVSVLN 518

Query: 348 ACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPT 407
           AC H+GLVD  +  F  ++   Y   P ++HY+ +V++ +  G   EA  ++  MPF+P 
Sbjct: 519 ACAHAGLVDEAKAQFVSMM-SVYKIEPQMEHYSSLVNVTSGQGQFEEAMYIITSMPFEPD 577

Query: 408 KAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGM 467
           K +WG+LL + +   ++  +   A  +  LEP +S  YV L N+YA+MG WD+  +VR  
Sbjct: 578 KTVWGALLDACRIYNNVGLAHVAAEAMSRLEPESSTPYVLLYNMYADMGLWDEASQVRMN 637

Query: 468 MKDRQLTKDLGCSSVE 483
           M+ +++ K+ G S V+
Sbjct: 638 MESKRIKKERGSSWVD 653



 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 81/206 (39%), Gaps = 45/206 (21%)

Query: 169 HDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQ 228
            D +  N+++  YA + R+      LF++M  R+ VSW+ MI GF   G+ D A++ F +
Sbjct: 134 RDSFSWNTMISGYAKNRRIGEAL-LLFEKMPERNAVSWSAMITGFCQNGEVDSAVVLFRK 192

Query: 229 M-----------------------------QYAGVAPNRVTMVNA----LAACADSGAVE 255
           M                             QY  +   R  +V A    +      G VE
Sbjct: 193 MPVKDSSPLCALVAGLIKNERLSEAAWVLGQYGSLVSGREDLVYAYNTLIVGYGQRGQVE 252

Query: 256 MGAWIHDFIR-----------RNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNV 304
               + D I            R  +  +VV   ++I  Y K G V     +F  +K+++ 
Sbjct: 253 AARCLFDQIPDLCGDDHGGEFRERFCKNVVSWNSMIKAYLKVGDVVSARLLFDQMKDRDT 312

Query: 305 FTWNAVIKGLALAKSGEEAIRLFNRM 330
            +WN +I G       E+A  LF+ M
Sbjct: 313 ISWNTMIDGYVHVSRMEDAFALFSEM 338


>AT1G32415.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr1:11695611-11697896 FORWARD LENGTH=761
          Length = 761

 Score =  179 bits (453), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 109/335 (32%), Positives = 181/335 (54%), Gaps = 14/335 (4%)

Query: 164 KLGHLHDIYVHNSLLGVYAAS---PRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFD 220
           ++  LHD     S++  Y  +    R F L ++L D    +D V+WTVMI G      F 
Sbjct: 393 RVKSLHDKVSWTSMIDGYLEAGDVSRAFGLFQKLHD----KDGVTWTVMISGLVQNELFA 448

Query: 221 DALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNG--WELDVVLGTA 278
           +A      M   G+ P   T    L++   +  ++ G  IH  I +    ++ D++L  +
Sbjct: 449 EAASLLSDMVRCGLKPLNSTYSVLLSSAGATSNLDQGKHIHCVIAKTTACYDPDLILQNS 508

Query: 279 LIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRAD 338
           L+ MYAKCG +E+   +F+ + +K+  +WN++I GL+     ++A+ LF  M   G + +
Sbjct: 509 LVSMYAKCGAIEDAYEIFAKMVQKDTVSWNSMIMGLSHHGLADKALNLFKEMLDSGKKPN 568

Query: 339 EVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEV 398
            VT L VLSAC+HSGL+  G ++F  + E  Y   P + HY  M+DLL R+G L+EA E 
Sbjct: 569 SVTFLGVLSACSHSGLITRGLELFKAMKE-TYSIQPGIDHYISMIDLLGRAGKLKEAEEF 627

Query: 399 MRCMPFDPTKAMWGSLL----VSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAE 454
           +  +PF P   ++G+LL    ++ + +     +E  A +L+EL+P N+  +V L N+YA 
Sbjct: 628 ISALPFTPDHTVYGALLGLCGLNWRDKDAEGIAERAAMRLLELDPVNAPGHVALCNVYAG 687

Query: 455 MGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGH 489
           +GR D  +++R  M  + + K  GCS V V  + +
Sbjct: 688 LGRHDMEKEMRKEMGIKGVKKTPGCSWVVVNGRAN 722



 Score = 75.5 bits (184), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 129/292 (44%), Gaps = 41/292 (14%)

Query: 193 QLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNR-VTMVNAL--AACA 249
           +LFDEM  R+VVSW  ++ G    G  + A   F+ M      P+R V   NA+      
Sbjct: 159 ELFDEMPERNVVSWNTLVTGLIRNGDMEKAKQVFDAM------PSRDVVSWNAMIKGYIE 212

Query: 250 DSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNA 309
           + G  E      D   +N     VV  T+++  Y + G V E  R+F  + E+N+ +W A
Sbjct: 213 NDGMEEAKLLFGDMSEKN-----VVTWTSMVYGYCRYGDVREAYRLFCEMPERNIVSWTA 267

Query: 310 VIKGLALAKSGEEAIRLFNRMEQ--DGVRADEVTLLAVLSACNHSGLV--DMGRQIFGFL 365
           +I G A  +   EA+ LF  M++  D V  +  TL+++  AC   G+    +G Q+   +
Sbjct: 268 MISGFAWNELYREALMLFLEMKKDVDAVSPNGETLISLAYACGGLGVEFRRLGEQLHAQV 327

Query: 366 VEGKYGFIPNVKHYA-CMVDLLARSG-------SLREAFEVMRCMPFDPTKAMWGSLLVS 417
           +   +  + +    A  +V + A SG        L E+F++  C            ++  
Sbjct: 328 ISNGWETVDHDGRLAKSLVHMYASSGLIASAQSLLNESFDLQSC----------NIIINR 377

Query: 418 SKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMK 469
               GDLE +E +  ++  L   +   +  + + Y E G   DV +  G+ +
Sbjct: 378 YLKNGDLERAETLFERVKSLH--DKVSWTSMIDGYLEAG---DVSRAFGLFQ 424



 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 95/223 (42%), Gaps = 37/223 (16%)

Query: 192 RQLFDEMTHRD----VVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNR-VTMVNALA 246
           R L D++  R     VV WT ++  +   G  D+A + FE M      P R +   NA+ 
Sbjct: 62  RHLLDKIPQRGSINRVVYWTSLLSKYAKTGYLDEARVLFEVM------PERNIVTCNAM- 114

Query: 247 ACADSGAVEMGAWIHDFIRRNGWEL------DVVLGTALIDMYAKCGRVEEGVRVFSSVK 300
                    +  ++        W L      +VV  T ++      GR E+ V +F  + 
Sbjct: 115 ---------LTGYVKCRRMNEAWTLFREMPKNVVSWTVMLTALCDDGRSEDAVELFDEMP 165

Query: 301 EKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQ 360
           E+NV +WN ++ GL      E+A ++F+ M       D V+  A++     +  ++  + 
Sbjct: 166 ERNVVSWNTLVTGLIRNGDMEKAKQVFDAMPS----RDVVSWNAMIKGYIENDGMEEAKL 221

Query: 361 IFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMP 403
           +FG + E       NV  +  MV    R G +REA+ +   MP
Sbjct: 222 LFGDMSE------KNVVTWTSMVYGYCRYGDVREAYRLFCEMP 258


>AT1G43980.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:16687637-16689502 REVERSE
           LENGTH=621
          Length = 621

 Score =  176 bits (447), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 116/389 (29%), Positives = 200/389 (51%), Gaps = 7/389 (1%)

Query: 98  VFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQS 157
           V  +N LI + S S    N    L  F  M    I P+ YT   +    S     ++ + 
Sbjct: 200 VVSWNCLILSCSDSG---NKEVALDQFWLMREMEIQPDEYTVSMVVSICSDLRELSKGKQ 256

Query: 158 VHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAG 217
             A  +K+G L +  V  + + +++   RL    + LF E+   D V    MI  +    
Sbjct: 257 ALALCIKMGFLSNSIVLGAGIDMFSKCNRLDDSVK-LFRELEKWDSVLCNSMIGSYSWHC 315

Query: 218 KFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGT 277
             +DAL  F       V P++ T  + L++  ++  ++ GA +H  + + G++LD  + T
Sbjct: 316 CGEDALRLFILAMTQSVRPDKFTFSSVLSS-MNAVMLDHGADVHSLVIKLGFDLDTAVAT 374

Query: 278 ALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQD-GVR 336
           +L++MY K G V+  + VF+    K++  WN VI GLA      E++ +FN++  +  ++
Sbjct: 375 SLMEMYFKTGSVDLAMGVFAKTDGKDLIFWNTVIMGLARNSRAVESLAIFNQLLMNQSLK 434

Query: 337 ADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAF 396
            D VTL+ +L AC ++G V+ G QIF  + E  +G  P  +HYAC+++LL R G + EA 
Sbjct: 435 PDRVTLMGILVACCYAGFVNEGIQIFSSM-EKAHGVNPGNEHYACIIELLCRVGMINEAK 493

Query: 397 EVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMG 456
           ++   +PF+P+  +W  +L +S   GD   +E VA+ ++E EP +S  Y+ L  +Y    
Sbjct: 494 DIADKIPFEPSSHIWEPILCASLDLGDTRLAETVAKTMLESEPKSSFPYLVLIKIYEMTW 553

Query: 457 RWDDVEKVRGMMKDRQLTKDLGCSSVEVE 485
           RW++  K+R  M + +L    G S + +E
Sbjct: 554 RWENSVKLRYAMNEHKLKSAQGSSKISIE 582



 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 147/307 (47%), Gaps = 11/307 (3%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P   V  +N++I        H   +    +F  M R  I P  +TF  L   ++   H 
Sbjct: 96  MPERDVVSWNTMISGLVSCGFHEYGI---RVFFDMQRWEIRPTEFTFSILASLVTCVRH- 151

Query: 153 AQAQSVHAHVLKLG-HLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIM 211
              + +H + +  G   +++ V NS++ +Y     +F     +F  M  RDVVSW  +I+
Sbjct: 152 --GEQIHGNAICSGVSRYNLVVWNSVMDMYR-RLGVFDYALSVFLTMEDRDVVSWNCLIL 208

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
              ++G  + AL  F  M+   + P+  T+   ++ C+D   +  G        + G+  
Sbjct: 209 SCSDSGNKEVALDQFWLMREMEIQPDEYTVSMVVSICSDLRELSKGKQALALCIKMGFLS 268

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRME 331
           + ++  A IDM++KC R+++ V++F  +++ +    N++I   +    GE+A+RLF    
Sbjct: 269 NSIVLGAGIDMFSKCNRLDDSVKLFRELEKWDSVLCNSMIGSYSWHCCGEDALRLFILAM 328

Query: 332 QDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGS 391
              VR D+ T  +VLS+ N + ++D G  +   ++  K GF  +      ++++  ++GS
Sbjct: 329 TQSVRPDKFTFSSVLSSMN-AVMLDHGADVHSLVI--KLGFDLDTAVATSLMEMYFKTGS 385

Query: 392 LREAFEV 398
           +  A  V
Sbjct: 386 VDLAMGV 392



 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 132/296 (44%), Gaps = 44/296 (14%)

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRL-----------------FSLCRQ---- 193
           A+ VHA +L+ G +   Y  N  L +Y  S  +                 +++C +    
Sbjct: 23  AKIVHAQLLEAGFVRTTYWGNRCLQLYFKSGSVINALQLFDDIPDKNTITWNVCLKGLFK 82

Query: 194 ---------LFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVT--MV 242
                    LFDEM  RDVVSW  MI G  + G  +  +  F  MQ   + P   T  ++
Sbjct: 83  NGYLNNALDLFDEMPERDVVSWNTMISGLVSCGFHEYGIRVFFDMQRWEIRPTEFTFSIL 142

Query: 243 NALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEK 302
            +L  C   G    G  I   + R     ++V+  +++DMY + G  +  + VF +++++
Sbjct: 143 ASLVTCVRHGEQIHGNAICSGVSR----YNLVVWNSVMDMYRRLGVFDYALSVFLTMEDR 198

Query: 303 NVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIF 362
           +V +WN +I   + + + E A+  F  M +  ++ DE T+  V+S C+    +  G+Q  
Sbjct: 199 DVVSWNCLILSCSDSGNKEVALDQFWLMREMEIQPDEYTVSMVVSICSDLRELSKGKQAL 258

Query: 363 GFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSS 418
              +  K GF+ N       +D+ ++   L ++ ++ R +        W S+L +S
Sbjct: 259 ALCI--KMGFLSNSIVLGAGIDMFSKCNRLDDSVKLFRELE------KWDSVLCNS 306


>AT3G26540.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:9744542-9746644 REVERSE
           LENGTH=700
          Length = 700

 Score =  175 bits (443), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 97/319 (30%), Positives = 164/319 (51%), Gaps = 7/319 (2%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P  ++  +N+++  + H+H    +L  L++      N    ++ T  ++    S     
Sbjct: 355 MPERNIVSWNAMLGGYVHAHEWDEALDFLTLMRQEIENI---DNVTLVWILNVCSGISDV 411

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTH-RDVVSWTVMIM 211
              +  H  + + G+  ++ V N+LL +Y     L S     F +M+  RD VSW  ++ 
Sbjct: 412 QMGKQAHGFIYRHGYDTNVIVANALLDMYGKCGTLQS-ANIWFRQMSELRDEVSWNALLT 470

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
           G    G+ + AL  FE MQ     P++ T+   LA CA+  A+ +G  IH F+ R+G+++
Sbjct: 471 GVARVGRSEQALSFFEGMQVEA-KPSKYTLATLLAGCANIPALNLGKAIHGFLIRDGYKI 529

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRME 331
           DVV+  A++DMY+KC   +  + VF     +++  WN++I+G       +E   LF  +E
Sbjct: 530 DVVIRGAMVDMYSKCRCFDYAIEVFKEAATRDLILWNSIIRGCCRNGRSKEVFELFMLLE 589

Query: 332 QDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGS 391
            +GV+ D VT L +L AC   G V++G Q F  +   KY   P V+HY CM++L  + G 
Sbjct: 590 NEGVKPDHVTFLGILQACIREGHVELGFQYFSSM-STKYHISPQVEHYDCMIELYCKYGC 648

Query: 392 LREAFEVMRCMPFDPTKAM 410
           L +  E +  MPFDP   M
Sbjct: 649 LHQLEEFLLLMPFDPPMQM 667



 Score =  128 bits (322), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 160/351 (45%), Gaps = 35/351 (9%)

Query: 123 IFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYA 182
           +F  M+R+ +     +F  + KS          + +H  V+K G+  ++ +  S++ VY 
Sbjct: 149 MFRRMNRDGVRATETSFAGVLKSCGLILDLRLLRQLHCAVVKYGYSGNVDLETSIVDVYG 208

Query: 183 ASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMV 242
              R+ S  R++FDE+ +   VSW V++  +   G  D+A++ F +M    V P   T+ 
Sbjct: 209 KC-RVMSDARRVFDEIVNPSDVSWNVIVRRYLEMGFNDEAVVMFFKMLELNVRPLNHTVS 267

Query: 243 NALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVK-- 300
           + + AC+ S A+E+G  IH    +     D V+ T++ DMY KC R+E   RVF   +  
Sbjct: 268 SVMLACSRSLALEVGKVIHAIAVKLSVVADTVVSTSVFDMYVKCDRLESARRVFDQTRSK 327

Query: 301 -----------------------------EKNVFTWNAVIKGLALAKSGEEAIRLFNRME 331
                                        E+N+ +WNA++ G   A   +EA+     M 
Sbjct: 328 DLKSWTSAMSGYAMSGLTREARELFDLMPERNIVSWNAMLGGYVHAHEWDEALDFLTLMR 387

Query: 332 QDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGS 391
           Q+    D VTL+ +L+ C+    V MG+Q  GF+   ++G+  NV     ++D+  + G+
Sbjct: 388 QEIENIDNVTLVWILNVCSGISDVQMGKQAHGFIY--RHGYDTNVIVANALLDMYGKCGT 445

Query: 392 LREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFS-EFVARKLVELEPAN 441
           L+ A    R M     +  W +LL      G  E +  F     VE +P+ 
Sbjct: 446 LQSANIWFRQMSELRDEVSWNALLTGVARVGRSEQALSFFEGMQVEAKPSK 496



 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 146/336 (43%), Gaps = 9/336 (2%)

Query: 135 NHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQL 194
           +++ +  LF+S S+     QA+ V +H++    L  I++ N  +  Y          R+L
Sbjct: 60  SYWLYERLFRSCSSKALVVQARKVQSHLVTFSPLPPIFLLNRAIEAYGKCG-CVDDAREL 118

Query: 195 FDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAV 254
           F+EM  RD  SW  +I      G  D+    F +M   GV     +    L +C     +
Sbjct: 119 FEEMPERDGGSWNAVITACAQNGVSDEVFRMFRRMNRDGVRATETSFAGVLKSCGLILDL 178

Query: 255 EMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGL 314
            +   +H  + + G+  +V L T+++D+Y KC  + +  RVF  +   +  +WN +++  
Sbjct: 179 RLLRQLHCAVVKYGYSGNVDLETSIVDVYGKCRVMSDARRVFDEIVNPSDVSWNVIVRRY 238

Query: 315 ALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIP 374
                 +EA+ +F +M +  VR    T+ +V+ AC+ S  +++G+ I    V  K   + 
Sbjct: 239 LEMGFNDEAVVMFFKMLELNVRPLNHTVSSVMLACSRSLALEVGKVIHAIAV--KLSVVA 296

Query: 375 NVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKL 434
           +      + D+  +   L  A  V     FD T++       S+ S   +      AR+L
Sbjct: 297 DTVVSTSVFDMYVKCDRLESARRV-----FDQTRSKDLKSWTSAMSGYAMSGLTREAREL 351

Query: 435 VELEPA-NSAYYVHLSNLYAEMGRWDDVEKVRGMMK 469
            +L P  N   +  +   Y     WD+      +M+
Sbjct: 352 FDLMPERNIVSWNAMLGGYVHAHEWDEALDFLTLMR 387


>AT2G35030.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:14761080-14762963 REVERSE
           LENGTH=627
          Length = 627

 Score =  172 bits (437), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 100/325 (30%), Positives = 185/325 (56%), Gaps = 7/325 (2%)

Query: 169 HDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQ 228
            D    N+++  +  +  +   C  LFD M  ++V+SWT MI G+    + ++AL  F +
Sbjct: 262 RDFASWNTMITGFIRNREMNKAC-GLFDRMPEKNVISWTTMITGYVENKENEEALNVFSK 320

Query: 229 MQYAG-VAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCG 287
           M   G V PN  T V+ L+AC+D   +  G  IH  I ++  + + ++ +AL++MY+K G
Sbjct: 321 MLRDGSVKPNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQKNEIVTSALLNMYSKSG 380

Query: 288 RVEEGVRVFSS--VKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAV 345
            +    ++F +  V ++++ +WN++I   A    G+EAI ++N+M + G +   VT L +
Sbjct: 381 ELIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYNQMRKHGFKPSAVTYLNL 440

Query: 346 LSACNHSGLVDMGRQIFGFLVEGKYGFIP-NVKHYACMVDLLARSGSLREAFEVMRCMPF 404
           L AC+H+GLV+ G + F  LV  +   +P   +HY C+VDL  R+G L++    + C   
Sbjct: 441 LFACSHAGLVEKGMEFFKDLVRDES--LPLREEHYTCLVDLCGRAGRLKDVTNFINCDDA 498

Query: 405 DPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKV 464
             +++ +G++L +     ++  ++ V +K++E    ++  YV +SN+YA  G+ ++  ++
Sbjct: 499 RLSRSFYGAILSACNVHNEVSIAKEVVKKVLETGSDDAGTYVLMSNIYAANGKREEAAEM 558

Query: 465 RGMMKDRQLTKDLGCSSVEVEEQGH 489
           R  MK++ L K  GCS V+V +Q H
Sbjct: 559 RMKMKEKGLKKQPGCSWVKVGKQNH 583



 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 108/226 (47%), Gaps = 18/226 (7%)

Query: 191 CRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACAD 250
            R+LFD +  RDVV+WT +I G+   G   +A   F+++           MV+       
Sbjct: 65  ARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDSRKNVVTWTAMVSGYLRSKQ 124

Query: 251 SGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAV 310
               EM     +   RN     VV    +ID YA+ GR+++ + +F  + E+N+ +WN++
Sbjct: 125 LSIAEM--LFQEMPERN-----VVSWNTMIDGYAQSGRIDKALELFDEMPERNIVSWNSM 177

Query: 311 IKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKY 370
           +K L      +EA+ LF RM     R D V+  A++     +G VD  R++F  + E   
Sbjct: 178 VKALVQRGRIDEAMNLFERMP----RRDVVSWTAMVDGLAKNGKVDEARRLFDCMPE--- 230

Query: 371 GFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLV 416
               N+  +  M+   A++  + EA ++ + MP +   A W +++ 
Sbjct: 231 ---RNIISWNAMITGYAQNNRIDEADQLFQVMP-ERDFASWNTMIT 272



 Score = 85.5 bits (210), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 142/336 (42%), Gaps = 45/336 (13%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRN-TILPNHYTFPFLFKSLSAPCH 151
           +P  +V  + ++I  +  +  +  +L   ++F+ M R+ ++ PN  T+  +  + S    
Sbjct: 290 MPEKNVISWTTMITGYVENKENEEAL---NVFSKMLRDGSVKPNVGTYVSILSACSDLAG 346

Query: 152 FAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDE--MTHRDVVSWTVM 209
             + Q +H  + K  H  +  V ++LL +Y+ S  L +  R++FD   +  RD++SW  M
Sbjct: 347 LVEGQQIHQLISKSVHQKNEIVTSALLNMYSKSGELIA-ARKMFDNGLVCQRDLISWNSM 405

Query: 210 IMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMG-AWIHDFIRRNG 268
           I  + + G   +A+  + QM+  G  P+ VT +N L AC+ +G VE G  +  D +R   
Sbjct: 406 IAVYAHHGHGKEAIEMYNQMRKHGFKPSAVTYLNLLFACSHAGLVEKGMEFFKDLVRDES 465

Query: 269 WELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFN 328
             L     T L+D+  + GR+++                                  + N
Sbjct: 466 LPLREEHYTCLVDLCGRAGRLKD----------------------------------VTN 491

Query: 329 RMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLAR 388
            +  D  R       A+LSACN    V + +++   ++E       +   Y  M ++ A 
Sbjct: 492 FINCDDARLSRSFYGAILSACNVHNEVSIAKEVVKKVLETGS---DDAGTYVLMSNIYAA 548

Query: 389 SGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDL 424
           +G   EA E+   M     K   G   V    Q  L
Sbjct: 549 NGKREEAAEMRMKMKEKGLKKQPGCSWVKVGKQNHL 584



 Score = 85.5 bits (210), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 153/356 (42%), Gaps = 79/356 (22%)

Query: 175 NSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGV 234
           N+++  YA S R+     +LFDEM  R++VSW  M+      G+ D+A+  FE+M    V
Sbjct: 144 NTMIDGYAQSGRI-DKALELFDEMPERNIVSWNSMVKALVQRGRIDEAMNLFERMPRRDV 202

Query: 235 APNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVR 294
             +   MV+ LA    +G V+    + D +     E +++   A+I  YA+  R++E  +
Sbjct: 203 V-SWTAMVDGLAK---NGKVDEARRLFDCMP----ERNIISWNAMITGYAQNNRIDEADQ 254

Query: 295 VF-------------------------------SSVKEKNVFTWNAVIKGLALAKSGEEA 323
           +F                                 + EKNV +W  +I G    K  EEA
Sbjct: 255 LFQVMPERDFASWNTMITGFIRNREMNKACGLFDRMPEKNVISWTTMITGYVENKENEEA 314

Query: 324 IRLFNRMEQDG-VRADEVTLLAVLSACNH-SGLVDMGRQIF------------------- 362
           + +F++M +DG V+ +  T +++LSAC+  +GLV+ G+QI                    
Sbjct: 315 LNVFSKMLRDGSVKPNVGTYVSILSACSDLAGLVE-GQQIHQLISKSVHQKNEIVTSALL 373

Query: 363 ------GFLVEGKYGFIP------NVKHYACMVDLLARSGSLREAFEV---MRCMPFDPT 407
                 G L+  +  F        ++  +  M+ + A  G  +EA E+   MR   F P+
Sbjct: 374 NMYSKSGELIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYNQMRKHGFKPS 433

Query: 408 KAMWGSLLVSSKSQGDLEFSEFVARKLVELE--PANSAYYVHLSNLYAEMGRWDDV 461
              + +LL +    G +E      + LV  E  P    +Y  L +L    GR  DV
Sbjct: 434 AVTYLNLLFACSHAGLVEKGMEFFKDLVRDESLPLREEHYTCLVDLCGRAGRLKDV 489



 Score = 85.5 bits (210), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 88/166 (53%), Gaps = 13/166 (7%)

Query: 169 HDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQ 228
            ++    +++  Y  S +L S+   LF EM  R+VVSW  MI G+  +G+ D AL  F++
Sbjct: 107 KNVVTWTAMVSGYLRSKQL-SIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDE 165

Query: 229 MQYAGVAPNR--VTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKC 286
           M      P R  V+  + + A    G ++    + + + R     DVV  TA++D  AK 
Sbjct: 166 M------PERNIVSWNSMVKALVQRGRIDEAMNLFERMPRR----DVVSWTAMVDGLAKN 215

Query: 287 GRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQ 332
           G+V+E  R+F  + E+N+ +WNA+I G A     +EA +LF  M +
Sbjct: 216 GKVDEARRLFDCMPERNIISWNAMITGYAQNNRIDEADQLFQVMPE 261



 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 89/196 (45%), Gaps = 15/196 (7%)

Query: 279 LIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRAD 338
           LI    K G++ E  ++F  + E++V TW  VI G        EA  LF+R++    R +
Sbjct: 52  LIGELCKVGKIAEARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDS---RKN 108

Query: 339 EVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEV 398
            VT  A++S    S  + +   +F  + E       NV  +  M+D  A+SG + +A E+
Sbjct: 109 VVTWTAMVSGYLRSKQLSIAEMLFQEMPE------RNVVSWNTMIDGYAQSGRIDKALEL 162

Query: 399 MRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAY-YVHLSNLYAEMGR 457
              MP +     W S++ +   +G ++     A  L E  P      +  + +  A+ G+
Sbjct: 163 FDEMP-ERNIVSWNSMVKALVQRGRID----EAMNLFERMPRRDVVSWTAMVDGLAKNGK 217

Query: 458 WDDVEKVRGMMKDRQL 473
            D+  ++   M +R +
Sbjct: 218 VDEARRLFDCMPERNI 233


>AT1G22830.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:8076921-8079032 FORWARD
           LENGTH=703
          Length = 703

 Score =  169 bits (428), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 100/316 (31%), Positives = 173/316 (54%), Gaps = 17/316 (5%)

Query: 169 HDI-YVHNSLLGVYAASPRLFSLCRQL------FDEMTHRDVVSWTVMIMGFRNAGKFDD 221
           HDI  V NSL+ +Y       S C  L      F ++    + +W  +I GF    + ++
Sbjct: 354 HDIDNVRNSLITMY-------SRCSDLRHAFIVFQQVEANSLSTWNSIISGFAYNERSEE 406

Query: 222 ALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFI-RRNGWELDVVLGTALI 280
                ++M  +G  PN +T+ + L   A  G ++ G   H +I RR  ++  ++L  +L+
Sbjct: 407 TSFLLKEMLLSGFHPNHITLASILPLFARVGNLQHGKEFHCYILRRQSYKDCLILWNSLV 466

Query: 281 DMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEV 340
           DMYAK G +    RVF S+++++  T+ ++I G      GE A+  F  M++ G++ D V
Sbjct: 467 DMYAKSGEIIAAKRVFDSMRKRDKVTYTSLIDGYGRLGKGEVALAWFKDMDRSGIKPDHV 526

Query: 341 TLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMR 400
           T++AVLSAC+HS LV  G  +F  + E  +G    ++HY+CMVDL  R+G L +A ++  
Sbjct: 527 TMVAVLSACSHSNLVREGHWLFTKM-EHVFGIRLRLEHYSCMVDLYCRAGYLDKARDIFH 585

Query: 401 CMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARK-LVELEPANSAYYVHLSNLYAEMGRWD 459
            +P++P+ AM  +LL +    G+    E+ A K L+E +P +  +Y+ L+++YA  G W 
Sbjct: 586 TIPYEPSSAMCATLLKACLIHGNTNIGEWAADKLLLETKPEHLGHYMLLADMYAVTGSWS 645

Query: 460 DVEKVRGMMKDRQLTK 475
            +  V+ ++ D  + K
Sbjct: 646 KLVTVKTLLSDLGVQK 661



 Score =  112 bits (280), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 155/345 (44%), Gaps = 47/345 (13%)

Query: 97  HVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQ 156
           H   +N LI ++  +     S+   S++  M    I  + +T+P + K+ +A   FA  +
Sbjct: 148 HPLPWNVLIGSYIRNKRFQESV---SVYKRMMSKGIRADEFTYPSVIKACAALLDFAYGR 204

Query: 157 SVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNA 216
            VH  +    H  ++YV N+L+ +Y    ++  + R+LFD M+ RD VSW  +I  + + 
Sbjct: 205 VVHGSIEVSSHRCNLYVCNALISMYKRFGKV-DVARRLFDRMSERDAVSWNAIINCYTSE 263

Query: 217 GKFDDALLAFEQMQYAGVAPNRVT-----------------------------------M 241
            K  +A    ++M  +GV  + VT                                   M
Sbjct: 264 EKLGEAFKLLDRMYLSGVEASIVTWNTIAGGCLEAGNYIGALNCVVGMRNCNVRIGSVAM 323

Query: 242 VNALAACADSGAVEMGAWIHDFIRRN---GWELDVVLGTALIDMYAKCGRVEEGVRVFSS 298
           +N L AC+  GA++ G   H  + R+     ++D V  + LI MY++C  +     VF  
Sbjct: 324 INGLKACSHIGALKWGKVFHCLVIRSCSFSHDIDNVRNS-LITMYSRCSDLRHAFIVFQQ 382

Query: 299 VKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMG 358
           V+  ++ TWN++I G A  +  EE   L   M   G   + +TL ++L      G +  G
Sbjct: 383 VEANSLSTWNSIISGFAYNERSEETSFLLKEMLLSGFHPNHITLASILPLFARVGNLQHG 442

Query: 359 RQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSL---REAFEVMR 400
           ++   +++  +  +   +  +  +VD+ A+SG +   +  F+ MR
Sbjct: 443 KEFHCYILR-RQSYKDCLILWNSLVDMYAKSGEIIAAKRVFDSMR 486



 Score = 78.6 bits (192), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 94/205 (45%), Gaps = 7/205 (3%)

Query: 152 FAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVV---SWTV 208
           F   Q +HAH +  G   D  +   L+  Y+A    F+L  +      + +++    W V
Sbjct: 99  FVPGQQLHAHCISSGLEFDSVLVPKLVTFYSA----FNLLDEAQTITENSEILHPLPWNV 154

Query: 209 MIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNG 268
           +I  +    +F +++  +++M   G+  +  T  + + ACA       G  +H  I  + 
Sbjct: 155 LIGSYIRNKRFQESVSVYKRMMSKGIRADEFTYPSVIKACAALLDFAYGRVVHGSIEVSS 214

Query: 269 WELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFN 328
              ++ +  ALI MY + G+V+   R+F  + E++  +WNA+I      +   EA +L +
Sbjct: 215 HRCNLYVCNALISMYKRFGKVDVARRLFDRMSERDAVSWNAIINCYTSEEKLGEAFKLLD 274

Query: 329 RMEQDGVRADEVTLLAVLSACNHSG 353
           RM   GV A  VT   +   C  +G
Sbjct: 275 RMYLSGVEASIVTWNTIAGGCLEAG 299


>AT1G22830.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:8076921-8079032 FORWARD
           LENGTH=703
          Length = 703

 Score =  169 bits (428), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 100/316 (31%), Positives = 173/316 (54%), Gaps = 17/316 (5%)

Query: 169 HDI-YVHNSLLGVYAASPRLFSLCRQL------FDEMTHRDVVSWTVMIMGFRNAGKFDD 221
           HDI  V NSL+ +Y       S C  L      F ++    + +W  +I GF    + ++
Sbjct: 354 HDIDNVRNSLITMY-------SRCSDLRHAFIVFQQVEANSLSTWNSIISGFAYNERSEE 406

Query: 222 ALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFI-RRNGWELDVVLGTALI 280
                ++M  +G  PN +T+ + L   A  G ++ G   H +I RR  ++  ++L  +L+
Sbjct: 407 TSFLLKEMLLSGFHPNHITLASILPLFARVGNLQHGKEFHCYILRRQSYKDCLILWNSLV 466

Query: 281 DMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEV 340
           DMYAK G +    RVF S+++++  T+ ++I G      GE A+  F  M++ G++ D V
Sbjct: 467 DMYAKSGEIIAAKRVFDSMRKRDKVTYTSLIDGYGRLGKGEVALAWFKDMDRSGIKPDHV 526

Query: 341 TLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMR 400
           T++AVLSAC+HS LV  G  +F  + E  +G    ++HY+CMVDL  R+G L +A ++  
Sbjct: 527 TMVAVLSACSHSNLVREGHWLFTKM-EHVFGIRLRLEHYSCMVDLYCRAGYLDKARDIFH 585

Query: 401 CMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARK-LVELEPANSAYYVHLSNLYAEMGRWD 459
            +P++P+ AM  +LL +    G+    E+ A K L+E +P +  +Y+ L+++YA  G W 
Sbjct: 586 TIPYEPSSAMCATLLKACLIHGNTNIGEWAADKLLLETKPEHLGHYMLLADMYAVTGSWS 645

Query: 460 DVEKVRGMMKDRQLTK 475
            +  V+ ++ D  + K
Sbjct: 646 KLVTVKTLLSDLGVQK 661



 Score =  112 bits (280), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 155/345 (44%), Gaps = 47/345 (13%)

Query: 97  HVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQ 156
           H   +N LI ++  +     S+   S++  M    I  + +T+P + K+ +A   FA  +
Sbjct: 148 HPLPWNVLIGSYIRNKRFQESV---SVYKRMMSKGIRADEFTYPSVIKACAALLDFAYGR 204

Query: 157 SVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNA 216
            VH  +    H  ++YV N+L+ +Y    ++  + R+LFD M+ RD VSW  +I  + + 
Sbjct: 205 VVHGSIEVSSHRCNLYVCNALISMYKRFGKV-DVARRLFDRMSERDAVSWNAIINCYTSE 263

Query: 217 GKFDDALLAFEQMQYAGVAPNRVT-----------------------------------M 241
            K  +A    ++M  +GV  + VT                                   M
Sbjct: 264 EKLGEAFKLLDRMYLSGVEASIVTWNTIAGGCLEAGNYIGALNCVVGMRNCNVRIGSVAM 323

Query: 242 VNALAACADSGAVEMGAWIHDFIRRN---GWELDVVLGTALIDMYAKCGRVEEGVRVFSS 298
           +N L AC+  GA++ G   H  + R+     ++D V  + LI MY++C  +     VF  
Sbjct: 324 INGLKACSHIGALKWGKVFHCLVIRSCSFSHDIDNVRNS-LITMYSRCSDLRHAFIVFQQ 382

Query: 299 VKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMG 358
           V+  ++ TWN++I G A  +  EE   L   M   G   + +TL ++L      G +  G
Sbjct: 383 VEANSLSTWNSIISGFAYNERSEETSFLLKEMLLSGFHPNHITLASILPLFARVGNLQHG 442

Query: 359 RQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSL---REAFEVMR 400
           ++   +++  +  +   +  +  +VD+ A+SG +   +  F+ MR
Sbjct: 443 KEFHCYILR-RQSYKDCLILWNSLVDMYAKSGEIIAAKRVFDSMR 486



 Score = 78.6 bits (192), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 94/205 (45%), Gaps = 7/205 (3%)

Query: 152 FAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVV---SWTV 208
           F   Q +HAH +  G   D  +   L+  Y+A    F+L  +      + +++    W V
Sbjct: 99  FVPGQQLHAHCISSGLEFDSVLVPKLVTFYSA----FNLLDEAQTITENSEILHPLPWNV 154

Query: 209 MIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNG 268
           +I  +    +F +++  +++M   G+  +  T  + + ACA       G  +H  I  + 
Sbjct: 155 LIGSYIRNKRFQESVSVYKRMMSKGIRADEFTYPSVIKACAALLDFAYGRVVHGSIEVSS 214

Query: 269 WELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFN 328
              ++ +  ALI MY + G+V+   R+F  + E++  +WNA+I      +   EA +L +
Sbjct: 215 HRCNLYVCNALISMYKRFGKVDVARRLFDRMSERDAVSWNAIINCYTSEEKLGEAFKLLD 274

Query: 329 RMEQDGVRADEVTLLAVLSACNHSG 353
           RM   GV A  VT   +   C  +G
Sbjct: 275 RMYLSGVEASIVTWNTIAGGCLEAG 299


>AT1G23450.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:8324698-8326697 FORWARD
           LENGTH=666
          Length = 666

 Score =  164 bits (414), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 113/396 (28%), Positives = 191/396 (48%), Gaps = 8/396 (2%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           VP   V  +NS++   S    + + L  L +F+ M      P+   F       S     
Sbjct: 275 VPEKDVISWNSIV---SVCADYGSVLDSLDLFSKMQFWGKRPSIRPFMSFLNFCSRNSDI 331

Query: 153 AQAQSVHAHVLKLG-HLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIM 211
              + +H +VLK+G  +  ++V ++L+ +Y     + +    L+  +   ++     ++ 
Sbjct: 332 QSGKQIHCYVLKMGFDVSSLHVQSALIDMYGKCNGIEN-SALLYQSLPCLNLECCNSLMT 390

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADS--GAVEMGAWIHDFIRRNGW 269
              + G   D +  F  M   G   + VT+   L A + S   ++     +H    ++G+
Sbjct: 391 SLMHCGITKDIIEMFGLMIDEGTGIDEVTLSTVLKALSLSLPESLHSCTLVHCCAIKSGY 450

Query: 270 ELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNR 329
             DV +  +LID Y K G+ E   +VF  +   N+F   ++I G A    G + +++   
Sbjct: 451 AADVAVSCSLIDAYTKSGQNEVSRKVFDELDTPNIFCLTSIINGYARNGMGTDCVKMLRE 510

Query: 330 MEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARS 389
           M++  +  DEVT+L+VLS C+HSGLV+ G  IF  L E KYG  P  K YACMVDLL R+
Sbjct: 511 MDRMNLIPDEVTILSVLSGCSHSGLVEEGELIFDSL-ESKYGISPGRKLYACMVDLLGRA 569

Query: 390 GSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLS 449
           G + +A  ++     D     W SLL S +   +       A  L+ LEP N A Y+ +S
Sbjct: 570 GLVEKAERLLLQARGDADCVAWSSLLQSCRIHRNETIGRRAAEVLMNLEPENFAVYIQVS 629

Query: 450 NLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVE 485
             Y E+G ++   ++R +   R+L +++G SSV V+
Sbjct: 630 KFYFEIGDFEISRQIREIAASRELMREIGYSSVVVK 665



 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 162/323 (50%), Gaps = 11/323 (3%)

Query: 98  VFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQS 157
           V  +N LI   S +  +  SL  + ++A M    +  +  TFP +    S      +   
Sbjct: 77  VVTYNLLI---SGNSRYGCSLRAIELYAEMVSCGLRESASTFPSVLSVCSDELFCREGIQ 133

Query: 158 VHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAG 217
           VH  V+ LG   +++V ++L+G+YA   RL  +  +LFDEM  R++    +++  F   G
Sbjct: 134 VHCRVISLGFGCNMFVRSALVGLYAC-LRLVDVALKLFDEMLDRNLAVCNLLLRCFCQTG 192

Query: 218 KFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL-DVVLG 276
           +       + +M+  GVA N +T    +  C+    V  G  +H  + ++GW + ++ + 
Sbjct: 193 ESKRLFEVYLRMELEGVAKNGLTYCYMIRGCSHDRLVYEGKQLHSLVVKSGWNISNIFVA 252

Query: 277 TALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVR 336
             L+D Y+ CG +   +R F++V EK+V +WN+++   A   S  +++ LF++M+  G R
Sbjct: 253 NVLVDYYSACGDLSGSMRSFNAVPEKDVISWNSIVSVCADYGSVLDSLDLFSKMQFWGKR 312

Query: 337 ADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGF-IPNVKHYACMVDLLARSGSLREA 395
                 ++ L+ C+ +  +  G+QI  +++  K GF + ++   + ++D+  +   +  +
Sbjct: 313 PSIRPFMSFLNFCSRNSDIQSGKQIHCYVL--KMGFDVSSLHVQSALIDMYGKCNGIENS 370

Query: 396 ---FEVMRCMPFDPTKAMWGSLL 415
              ++ + C+  +   ++  SL+
Sbjct: 371 ALLYQSLPCLNLECCNSLMTSLM 393



 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 112/229 (48%), Gaps = 10/229 (4%)

Query: 171 IYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQ 230
           +Y HN  +     S  L S   + FDEM+ RDVV++ ++I G    G    A+  + +M 
Sbjct: 46  VYTHNRRIDELIKSGNLLSA-HEAFDEMSVRDVVTYNLLISGNSRYGCSLRAIELYAEMV 104

Query: 231 YAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVE 290
             G+  +  T  + L+ C+D      G  +H  +   G+  ++ + +AL+ +YA    V+
Sbjct: 105 SCGLRESASTFPSVLSVCSDELFCREGIQVHCRVISLGFGCNMFVRSALVGLYACLRLVD 164

Query: 291 EGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACN 350
             +++F  + ++N+   N +++        +    ++ RME +GV  + +T   ++  C+
Sbjct: 165 VALKLFDEMLDRNLAVCNLLLRCFCQTGESKRLFEVYLRMELEGVAKNGLTYCYMIRGCS 224

Query: 351 HSGLVDMGRQIFGFLVEGKYG----FIPN--VKHYACMVDLLARSGSLR 393
           H  LV  G+Q+   +V+  +     F+ N  V +Y+   DL   SGS+R
Sbjct: 225 HDRLVYEGKQLHSLVVKSGWNISNIFVANVLVDYYSACGDL---SGSMR 270


>AT3G58590.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:21666262-21668487 FORWARD
           LENGTH=741
          Length = 741

 Score =  159 bits (401), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 167/351 (47%), Gaps = 42/351 (11%)

Query: 97  HVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQ 156
           ++  +N+L+  +++     +    LS+F  M +    P  YTF    KS    C   + Q
Sbjct: 381 NIVCWNALLSGYAN----KDGPICLSLFLQMLQMGFRPTEYTFSTALKS----CCVTELQ 432

Query: 157 SVHAHVLKLGHLHDIYVHNSLLGVYAASPRL----------------------------- 187
            +H+ ++++G+  + YV +SL+  YA +  +                             
Sbjct: 433 QLHSVIVRMGYEDNDYVLSSLMRSYAKNQLMNDALLLLDWASGPTSVVPLNIVAGIYSRR 492

Query: 188 --FSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNAL 245
             +    +L   +   D VSW + I     +   ++ +  F+ M  + + P++ T V+ L
Sbjct: 493 GQYHESVKLISTLEQPDTVSWNIAIAACSRSDYHEEVIELFKHMLQSNIRPDKYTFVSIL 552

Query: 246 AACADSGAVEMGAWIHDFIRRNGWEL-DVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNV 304
           + C+    + +G+ IH  I +  +   D  +   LIDMY KCG +   ++VF   +EKN+
Sbjct: 553 SLCSKLCDLTLGSSIHGLITKTDFSCADTFVCNVLIDMYGKCGSIRSVMKVFEETREKNL 612

Query: 305 FTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGF 364
            TW A+I  L +   G+EA+  F      G + D V+ +++L+AC H G+V  G  +F  
Sbjct: 613 ITWTALISCLGIHGYGQEALEKFKETLSLGFKPDRVSFISILTACRHGGMVKEGMGLFQK 672

Query: 365 LVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLL 415
           + +  YG  P + HY C VDLLAR+G L+EA  ++R MPF     +W + L
Sbjct: 673 MKD--YGVEPEMDHYRCAVDLLARNGYLKEAEHLIREMPFPADAPVWRTFL 721



 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 108/230 (46%), Gaps = 9/230 (3%)

Query: 138 TFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDE 197
           +F  + K +S       ++ +H    K G   +I V NSL+  Y        +  ++F +
Sbjct: 217 SFLGVLKGVSCVKDLDISKQLHCSATKKGLDCEISVVNSLISAYGKCGNT-HMAERMFQD 275

Query: 198 MTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMG 257
               D+VSW  +I     +     AL  F  M   G +PN+ T V+ L   +    +  G
Sbjct: 276 AGSWDIVSWNAIICATAKSENPLKALKLFVSMPEHGFSPNQGTYVSVLGVSSLVQLLSCG 335

Query: 258 AWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALA 317
             IH  + +NG E  +VLG ALID YAKCG +E+    F  +++KN+  WNA++ G A  
Sbjct: 336 RQIHGMLIKNGCETGIVLGNALIDFYAKCGNLEDSRLCFDYIRDKNIVCWNALLSGYA-N 394

Query: 318 KSGEEAIRLFNRMEQDGVRADEVTLLAVLSACN-------HSGLVDMGRQ 360
           K G   + LF +M Q G R  E T    L +C        HS +V MG +
Sbjct: 395 KDGPICLSLFLQMLQMGFRPTEYTFSTALKSCCVTELQQLHSVIVRMGYE 444



 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/363 (21%), Positives = 155/363 (42%), Gaps = 17/363 (4%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P  +   FN++I+ +S    + +      +F+ M     LPN  T   L     A    
Sbjct: 75  MPERNKVSFNTIIKGYSK---YGDVDKAWGVFSEMRYFGYLPNQSTVSGLLSC--ASLDV 129

Query: 153 AQAQSVHAHVLKLG-HLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIM 211
                +H   LK G  + D +V   LL +Y     L  +  Q+F++M  + + +W  M+ 
Sbjct: 130 RAGTQLHGLSLKYGLFMADAFVGTCLLCLYG-RLDLLEMAEQVFEDMPFKSLETWNHMMS 188

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
              + G   + +  F ++   G +    + +  L   +    +++   +H    + G + 
Sbjct: 189 LLGHRGFLKECMFFFRELVRMGASLTESSFLGVLKGVSCVKDLDISKQLHCSATKKGLDC 248

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRME 331
           ++ +  +LI  Y KCG      R+F      ++ +WNA+I   A +++  +A++LF  M 
Sbjct: 249 EISVVNSLISAYGKCGNTHMAERMFQDAGSWDIVSWNAIICATAKSENPLKALKLFVSMP 308

Query: 332 QDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGS 391
           + G   ++ T ++VL   +   L+  GRQI G L+  K G    +     ++D  A+ G+
Sbjct: 309 EHGFSPNQGTYVSVLGVSSLVQLLSCGRQIHGMLI--KNGCETGIVLGNALIDFYAKCGN 366

Query: 392 LREA---FEVMRCMPFDPTKAMWGSLLVS-SKSQGDLEFSEFVARKLVELEPANSAYYVH 447
           L ++   F+ +R    D     W +LL   +   G +  S F+    +   P    +   
Sbjct: 367 LEDSRLCFDYIR----DKNIVCWNALLSGYANKDGPICLSLFLQMLQMGFRPTEYTFSTA 422

Query: 448 LSN 450
           L +
Sbjct: 423 LKS 425



 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 108/213 (50%), Gaps = 6/213 (2%)

Query: 152 FAQAQSVHAHVLKLGH--LHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVM 209
           FA+ +++HA  + L    L  +YV N+++ +Y     + SL  ++FD+M  R+ VS+  +
Sbjct: 28  FARTKALHALSITLCSVLLQPVYVCNNIISLYEKLGEV-SLAGKVFDQMPERNKVSFNTI 86

Query: 210 IMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNG- 268
           I G+   G  D A   F +M+Y G  PN+ T V+ L +CA S  V  G  +H    + G 
Sbjct: 87  IKGYSKYGDVDKAWGVFSEMRYFGYLPNQST-VSGLLSCA-SLDVRAGTQLHGLSLKYGL 144

Query: 269 WELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFN 328
           +  D  +GT L+ +Y +   +E   +VF  +  K++ TWN ++  L      +E +  F 
Sbjct: 145 FMADAFVGTCLLCLYGRLDLLEMAEQVFEDMPFKSLETWNHMMSLLGHRGFLKECMFFFR 204

Query: 329 RMEQDGVRADEVTLLAVLSACNHSGLVDMGRQI 361
            + + G    E + L VL   +    +D+ +Q+
Sbjct: 205 ELVRMGASLTESSFLGVLKGVSCVKDLDISKQL 237



 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 122/287 (42%), Gaps = 13/287 (4%)

Query: 12  STTLPFCSVLTFD----YTLRMSGFSDRAVTLLKDFCHSRLHVQQIQAQLILHNLQSNPT 67
           ST L  C V          +RM G+ D    +L     S    Q +   L+L +  S PT
Sbjct: 420 STALKSCCVTELQQLHSVIVRM-GYEDNDY-VLSSLMRSYAKNQLMNDALLLLDWASGPT 477

Query: 68  --IAHHFITVCQSHXXXXXXXXXXXXXVPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFA 125
             +  + +    S              + +P    +N  I A S S +H   +    +F 
Sbjct: 478 SVVPLNIVAGIYSRRGQYHESVKLISTLEQPDTVSWNIAIAACSRSDYHEEVI---ELFK 534

Query: 126 HMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLG-HLHDIYVHNSLLGVYAAS 184
           HM ++ I P+ YTF  +    S  C      S+H  + K      D +V N L+ +Y   
Sbjct: 535 HMLQSNIRPDKYTFVSILSLCSKLCDLTLGSSIHGLITKTDFSCADTFVCNVLIDMYGKC 594

Query: 185 PRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNA 244
             + S+  ++F+E   +++++WT +I      G   +AL  F++    G  P+RV+ ++ 
Sbjct: 595 GSIRSV-MKVFEETREKNLITWTALISCLGIHGYGQEALEKFKETLSLGFKPDRVSFISI 653

Query: 245 LAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEE 291
           L AC   G V+ G  +   ++  G E ++      +D+ A+ G ++E
Sbjct: 654 LTACRHGGMVKEGMGLFQKMKDYGVEPEMDHYRCAVDLLARNGYLKE 700


>AT1G19720.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:6819926-6822610 REVERSE
           LENGTH=894
          Length = 894

 Score =  157 bits (397), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 97/298 (32%), Positives = 155/298 (52%), Gaps = 7/298 (2%)

Query: 196 DEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVE 255
           D    R+  +W ++I G+   GK D+AL  F +MQ++   PN VT+++ L ACA+    +
Sbjct: 482 DGKVQRNTATWNLIIAGYIQNGKKDEALELFRKMQFSRFMPNSVTILSLLPACANLLGAK 541

Query: 256 MGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLA 315
           M   IH  + R   +    +  AL D YAK G +E    +F  ++ K++ TWN++I G  
Sbjct: 542 MVREIHGCVLRRNLDAIHAVKNALTDTYAKSGDIEYSRTIFLGMETKDIITWNSLIGGYV 601

Query: 316 LAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPN 375
           L  S   A+ LFN+M+  G+  +  TL +++ A    G VD G+++F + +   Y  IP 
Sbjct: 602 LHGSYGPALALFNQMKTQGITPNRGTLSSIILAHGLMGNVDEGKKVF-YSIANDYHIIPA 660

Query: 376 VKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLV 435
           ++H + MV L  R+  L EA + ++ M       +W S L   +  GD++ +   A  L 
Sbjct: 661 LEHCSAMVYLYGRANRLEEALQFIQEMNIQSETPIWESFLTGCRIHGDIDMAIHAAENLF 720

Query: 436 ELEPANSAYYVHLSNLY---AEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGHT 490
            LEP N+A    +S +Y   A++GR  +  K R   +D  L K LG S +EV    HT
Sbjct: 721 SLEPENTATESIVSQIYALGAKLGRSLEGNKPR---RDNLLKKPLGQSWIEVRNLIHT 775



 Score =  121 bits (303), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 167/378 (44%), Gaps = 75/378 (19%)

Query: 97  HVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQ 156
           ++F ++++I A+S  +          +F  M ++ +LP+ + FP + +  +        +
Sbjct: 145 NLFTWSAMIGAYSRENRWREVA---KLFRLMMKDGVLPDDFLFPKILQGCANCGDVEAGK 201

Query: 157 SVHAHVLKL-------------------GHL------------HDIYVHNSLLGVYAASP 185
            +H+ V+KL                   G L             D+   NS+L  Y  + 
Sbjct: 202 VIHSVVIKLGMSSCLRVSNSILAVYAKCGELDFATKFFRRMRERDVIAWNSVLLAYCQNG 261

Query: 186 R---LFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFD---------------------- 220
           +      L +++  E     +V+W ++I G+   GK D                      
Sbjct: 262 KHEEAVELVKEMEKEGISPGLVTWNILIGGYNQLGKCDAAMDLMQKMETFGITADVFTWT 321

Query: 221 -------------DALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRN 267
                         AL  F +M  AGV PN VT+++A++AC+    +  G+ +H    + 
Sbjct: 322 AMISGLIHNGMRYQALDMFRKMFLAGVVPNAVTIMSAVSACSCLKVINQGSEVHSIAVKM 381

Query: 268 GWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLF 327
           G+  DV++G +L+DMY+KCG++E+  +VF SVK K+V+TWN++I G   A    +A  LF
Sbjct: 382 GFIDDVLVGNSLVDMYSKCGKLEDARKVFDSVKNKDVYTWNSMITGYCQAGYCGKAYELF 441

Query: 328 NRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIP-NVKHYACMVDLL 386
            RM+   +R + +T   ++S    +G  D G  +  F    K G +  N   +  ++   
Sbjct: 442 TRMQDANLRPNIITWNTMISGYIKNG--DEGEAMDLFQRMEKDGKVQRNTATWNLIIAGY 499

Query: 387 ARSGSLREAFEVMRCMPF 404
            ++G   EA E+ R M F
Sbjct: 500 IQNGKKDEALELFRKMQF 517



 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 114/235 (48%), Gaps = 7/235 (2%)

Query: 170 DIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQM 229
           D++V   LL +YA      +  R++FD M  R++ +W+ MI  +    ++ +    F  M
Sbjct: 114 DVFVETKLLSMYAKCG-CIADARKVFDSMRERNLFTWSAMIGAYSRENRWREVAKLFRLM 172

Query: 230 QYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRV 289
              GV P+       L  CA+ G VE G  IH  + + G    + +  +++ +YAKCG +
Sbjct: 173 MKDGVLPDDFLFPKILQGCANCGDVEAGKVIHSVVIKLGMSSCLRVSNSILAVYAKCGEL 232

Query: 290 EEGVRVFSSVKEKNVFTWNAVIKGLALAKSG--EEAIRLFNRMEQDGVRADEVTLLAVLS 347
           +   + F  ++E++V  WN+V+  LA  ++G  EEA+ L   ME++G+    VT   ++ 
Sbjct: 233 DFATKFFRRMRERDVIAWNSVL--LAYCQNGKHEEAVELVKEMEKEGISPGLVTWNILIG 290

Query: 348 ACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCM 402
             N  G  D    +   +    +G   +V  +  M+  L  +G   +A ++ R M
Sbjct: 291 GYNQLGKCDAAMDLMQKME--TFGITADVFTWTAMISGLIHNGMRYQALDMFRKM 343



 Score = 99.4 bits (246), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 148/320 (46%), Gaps = 41/320 (12%)

Query: 98  VFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQS 157
           VF + ++I    H+   + +L    +F  M    ++PN  T      + S      Q   
Sbjct: 317 VFTWTAMISGLIHNGMRYQAL---DMFRKMFLAGVVPNAVTIMSAVSACSCLKVINQGSE 373

Query: 158 VHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAG 217
           VH+  +K+G + D+ V NSL+ +Y+   +L    R++FD + ++DV +W  MI G+  AG
Sbjct: 374 VHSIAVKMGFIDDVLVGNSLVDMYSKCGKLED-ARKVFDSVKNKDVYTWNSMITGYCQAG 432

Query: 218 KFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGT 277
               A   F +MQ A + PN +T    +     SG +           +NG E     G 
Sbjct: 433 YCGKAYELFTRMQDANLRPNIITWNTMI-----SGYI-----------KNGDE-----GE 471

Query: 278 ALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRA 337
           A+ D++    R+E+  +V     ++N  TWN +I G       +EA+ LF +M+      
Sbjct: 472 AM-DLFQ---RMEKDGKV-----QRNTATWNLIIAGYIQNGKKDEALELFRKMQFSRFMP 522

Query: 338 DEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFE 397
           + VT+L++L AC +     M R+I G ++      I  VK+   + D  A+SG +  +  
Sbjct: 523 NSVTILSLLPACANLLGAKMVREIHGCVLRRNLDAIHAVKN--ALTDTYAKSGDIEYSRT 580

Query: 398 VMRCMPFDPTKAM--WGSLL 415
           +   M    TK +  W SL+
Sbjct: 581 IFLGM---ETKDIITWNSLI 597



 Score = 92.0 bits (227), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 128/265 (48%), Gaps = 11/265 (4%)

Query: 217 GKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGW--ELDVV 274
           G   +A  A + +   G    R T +  L +C DSG++ +G  +H    R G   E DV 
Sbjct: 60  GSLLEAEKALDSLFQQGSKVKRSTYLKLLESCIDSGSIHLGRILH---ARFGLFTEPDVF 116

Query: 275 LGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDG 334
           + T L+ MYAKCG + +  +VF S++E+N+FTW+A+I   +      E  +LF  M +DG
Sbjct: 117 VETKLLSMYAKCGCIADARKVFDSMRERNLFTWSAMIGAYSRENRWREVAKLFRLMMKDG 176

Query: 335 VRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLRE 394
           V  D+     +L  C + G V+ G+ I   ++  K G    ++    ++ + A+ G L  
Sbjct: 177 VLPDDFLFPKILQGCANCGDVEAGKVIHSVVI--KLGMSSCLRVSNSILAVYAKCGELDF 234

Query: 395 AFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVE--LEPANSAYYVHLSNLY 452
           A +  R M      A W S+L++    G  E +  + +++ +  + P    + + +   Y
Sbjct: 235 ATKFFRRMRERDVIA-WNSVLLAYCQNGKHEEAVELVKEMEKEGISPGLVTWNILIGG-Y 292

Query: 453 AEMGRWDDVEKVRGMMKDRQLTKDL 477
            ++G+ D    +   M+   +T D+
Sbjct: 293 NQLGKCDAAMDLMQKMETFGITADV 317



 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 94/201 (46%), Gaps = 15/201 (7%)

Query: 121 LSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLK--LGHLHDIYVHNSLL 178
           L +F  M  +  +PN  T   L  + +        + +H  VL+  L  +H   V N+L 
Sbjct: 509 LELFRKMQFSRFMPNSVTILSLLPACANLLGAKMVREIHGCVLRRNLDAIH--AVKNALT 566

Query: 179 GVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNR 238
             YA S  +    R +F  M  +D+++W  +I G+   G +  AL  F QM+  G+ PNR
Sbjct: 567 DTYAKSGDI-EYSRTIFLGMETKDIITWNSLIGGYVLHGSYGPALALFNQMKTQGITPNR 625

Query: 239 VTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLG--TALIDMYAKCGRVEEGVRVF 296
            T+ + + A    G V+ G  +   I  N + +   L   +A++ +Y +  R+EE ++  
Sbjct: 626 GTLSSIILAHGLMGNVDEGKKVFYSI-ANDYHIIPALEHCSAMVYLYGRANRLEEALQF- 683

Query: 297 SSVKEKNVFT----WNAVIKG 313
             ++E N+ +    W + + G
Sbjct: 684 --IQEMNIQSETPIWESFLTG 702


>AT5G03800.1 | Symbols: EMB175, emb1899, EMB166 | Pentatricopeptide
           repeat (PPR) superfamily protein | chr5:1010894-1013584
           REVERSE LENGTH=896
          Length = 896

 Score =  145 bits (365), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 97/388 (25%), Positives = 186/388 (47%), Gaps = 10/388 (2%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           V   +   +N+L+  F  + H    L  L +F  M +  +    ++      +       
Sbjct: 377 VTEKNTITYNALMAGFCRNGH---GLKALKLFTDMLQRGVELTDFSLTSAVDACGLVSEK 433

Query: 153 AQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHR--DVVSWTVMI 210
             ++ +H   +K G   +  +  +LL +     R+     ++FD+         + T +I
Sbjct: 434 KVSEQIHGFCIKFGTAFNPCIQTALLDMCTRCERMAD-AEEMFDQWPSNLDSSKATTSII 492

Query: 211 MGFRNAGKFDDALLAFEQ-MQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGW 269
            G+   G  D A+  F + +    +  + V++   LA C   G  EMG  IH +  + G+
Sbjct: 493 GGYARNGLPDKAVSLFHRTLCEQKLFLDEVSLTLILAVCGTLGFREMGYQIHCYALKAGY 552

Query: 270 ELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNR 329
             D+ LG +LI MYAKC   ++ +++F++++E +V +WN++I    L ++G+EA+ L++R
Sbjct: 553 FSDISLGNSLISMYAKCCDSDDAIKIFNTMREHDVISWNSLISCYILQRNGDEALALWSR 612

Query: 330 MEQDGVRADEVTLLAVLSACNH--SGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLA 387
           M +  ++ D +TL  V+SA  +  S  +   R +F   ++  Y   P  +HY   V +L 
Sbjct: 613 MNEKEIKPDIITLTLVISAFRYTESNKLSSCRDLF-LSMKTIYDIEPTTEHYTAFVRVLG 671

Query: 388 RSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVH 447
             G L EA + +  MP  P  ++  +LL S +   +   ++ VA+ ++  +P   + Y+ 
Sbjct: 672 HWGLLEEAEDTINSMPVQPEVSVLRALLDSCRIHSNTSVAKRVAKLILSTKPETPSEYIL 731

Query: 448 LSNLYAEMGRWDDVEKVRGMMKDRQLTK 475
            SN+Y+  G W   E +R  M++R   K
Sbjct: 732 KSNIYSASGFWHRSEMIREEMRERGYRK 759



 Score =  120 bits (302), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/361 (26%), Positives = 157/361 (43%), Gaps = 52/361 (14%)

Query: 96  PHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTIL-PNHYTFPFLFKSLSAPCHFAQ 154
           P V  + +LI  FS  +     +  L +F  M +  ++ PN YTF  +  +      F+ 
Sbjct: 143 PTVVSYTALISGFSRLNLE---IEALKVFFRMRKAGLVQPNEYTFVAILTACVRVSRFSL 199

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCR---QLFDEMTHRDVVSWTVMIM 211
              +H  ++K G L+ ++V NSL+ +Y       S C    +LFDE+  RDV SW  ++ 
Sbjct: 200 GIQIHGLIVKSGFLNSVFVSNSLMSLYDKDSG--SSCDDVLKLFDEIPQRDVASWNTVVS 257

Query: 212 GFRNAGKFDDAL-LAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNG-- 268
                GK   A  L +E  +  G   +  T+   L++C DS  +  G  +H    R G  
Sbjct: 258 SLVKEGKSHKAFDLFYEMNRVEGFGVDSFTLSTLLSSCTDSSVLLRGRELHGRAIRIGLM 317

Query: 269 ----------------WEL-------------DVVLGTALIDMYAKCGRVEEGVRVFSSV 299
                           W++             D V  T +I  Y   G V+  V +F++V
Sbjct: 318 QELSVNNALIGFYSKFWDMKKVESLYEMMMAQDAVTFTEMITAYMSFGMVDSAVEIFANV 377

Query: 300 KEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGR 359
            EKN  T+NA++ G      G +A++LF  M Q GV   + +L + + AC       +  
Sbjct: 378 TEKNTITYNALMAGFCRNGHGLKALKLFTDMLQRGVELTDFSLTSAVDACGLVSEKKVSE 437

Query: 360 QIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSK 419
           QI GF ++    F P ++    ++D+  R   + +A E+     FD     W S L SSK
Sbjct: 438 QIHGFCIKFGTAFNPCIQ--TALLDMCTRCERMADAEEM-----FD----QWPSNLDSSK 486

Query: 420 S 420
           +
Sbjct: 487 A 487



 Score = 89.4 bits (220), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 111/230 (48%), Gaps = 11/230 (4%)

Query: 141 FLFKSLSAPCHFAQ-AQSVHAHVLKLGHLHDIYVHNSLLGVYA--ASPRLFSLCRQLFDE 197
           F    LSA  H  +  ++VHA  LKL       + N+L+  Y     PR   L   +F  
Sbjct: 84  FYLLRLSAQYHDVEVTKAVHASFLKLRE-EKTRLGNALISTYLKLGFPREAIL---VFVS 139

Query: 198 MTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAG-VAPNRVTMVNALAACADSGAVEM 256
           ++   VVS+T +I GF       +AL  F +M+ AG V PN  T V  L AC       +
Sbjct: 140 LSSPTVVSYTALISGFSRLNLEIEALKVFFRMRKAGLVQPNEYTFVAILTACVRVSRFSL 199

Query: 257 GAWIHDFIRRNGWELDVVLGTALIDMYAK--CGRVEEGVRVFSSVKEKNVFTWNAVIKGL 314
           G  IH  I ++G+   V +  +L+ +Y K      ++ +++F  + +++V +WN V+  L
Sbjct: 200 GIQIHGLIVKSGFLNSVFVSNSLMSLYDKDSGSSCDDVLKLFDEIPQRDVASWNTVVSSL 259

Query: 315 ALAKSGEEAIRLFNRMEQ-DGVRADEVTLLAVLSACNHSGLVDMGRQIFG 363
                  +A  LF  M + +G   D  TL  +LS+C  S ++  GR++ G
Sbjct: 260 VKEGKSHKAFDLFYEMNRVEGFGVDSFTLSTLLSSCTDSSVLLRGRELHG 309



 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 57/103 (55%), Gaps = 3/103 (2%)

Query: 275 LGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDG 334
           LG ALI  Y K G   E + VF S+    V ++ A+I G +      EA+++F RM + G
Sbjct: 116 LGNALISTYLKLGFPREAILVFVSLSSPTVVSYTALISGFSRLNLEIEALKVFFRMRKAG 175

Query: 335 -VRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNV 376
            V+ +E T +A+L+AC       +G QI G +V  K GF+ +V
Sbjct: 176 LVQPNEYTFVAILTACVRVSRFSLGIQIHGLIV--KSGFLNSV 216


>AT1G14470.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:4954080-4955702 FORWARD
           LENGTH=540
          Length = 540

 Score =  140 bits (354), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 98/330 (29%), Positives = 162/330 (49%), Gaps = 50/330 (15%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P   V  +N+++  ++ +    ++L    +F  M R  + PN  T+  +  +    C F
Sbjct: 224 MPEKSVVSWNAMLSGYAQNGFTEDAL---RLFNDMLRLGVRPNETTWVIVISA----CSF 276

Query: 153 AQAQSVHAHVLKLGHLHDI----YVHNSLLGVYA------ASPRLF-------------- 188
               S+   ++KL     +    +V  +LL ++A      ++ R+F              
Sbjct: 277 RADPSLTRSLVKLIDEKRVRLNCFVKTALLDMHAKCRDIQSARRIFNELGTQRNLVTWNA 336

Query: 189 -----------SLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQM-QYAGVAP 236
                      S  RQLFD M  R+VVSW  +I G+ + G+   A+  FE M  Y    P
Sbjct: 337 MISGYTRIGDMSSARQLFDTMPKRNVVSWNSLIAGYAHNGQAALAIEFFEDMIDYGDSKP 396

Query: 237 NRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVF 296
           + VTM++ L+AC     +E+G  I D+IR+N  +L+     +LI MYA+ G + E  RVF
Sbjct: 397 DEVTMISVLSACGHMADLELGDCIVDYIRKNQIKLNDSGYRSLIFMYARGGNLWEAKRVF 456

Query: 297 SSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVD 356
             +KE++V ++N +    A    G E + L ++M+ +G+  D VT  +VL+ACN +GL+ 
Sbjct: 457 DEMKERDVVSYNTLFTAFAANGDGVETLNLLSKMKDEGIEPDRVTYTSVLTACNRAGLLK 516

Query: 357 MGRQIFGFLVEGKYGFIPNVKHYACMVDLL 386
            G++IF  +        P   HYACM DLL
Sbjct: 517 EGQRIFKSIRN------PLADHYACM-DLL 539



 Score =  128 bits (322), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 122/474 (25%), Positives = 187/474 (39%), Gaps = 114/474 (24%)

Query: 49  HVQQIQAQLILHN-LQSNPTIAHHFITVCQSHXXXXXXXXXXXXXVPRPHVFIFNSLIRA 107
            + QI AQLI+ N L      A   I+ C                V  P+VF+ NS+ + 
Sbjct: 21  QLNQIHAQLIVFNSLPRQSYWASRIISCCTRLRAPSYYTRLIFDSVTFPNVFVVNSMFKY 80

Query: 108 FSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGH 167
           FS     ++ L    ++    R  I+P+ ++FP + KS        Q     A V KLG 
Sbjct: 81  FSKMDMANDVL---RLYEQRSRCGIMPDAFSFPVVIKSAGRFGILFQ-----ALVEKLGF 132

Query: 168 LHDIYVHNSLLGVYA------ASPRLFSLCRQ------------------------LFDE 197
             D YV N ++ +Y       ++ ++F    Q                        LFD 
Sbjct: 133 FKDPYVRNVIMDMYVKHESVESARKVFDQISQRKGSDWNVMISGYWKWGNKEEACKLFDM 192

Query: 198 MTHRDVVSWTVMIMGF------RNAGKF-------------------------DDALLAF 226
           M   DVVSWTVMI GF       NA K+                         +DAL  F
Sbjct: 193 MPENDVVSWTVMITGFAKVKDLENARKYFDRMPEKSVVSWNAMLSGYAQNGFTEDALRLF 252

Query: 227 EQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKC 286
             M   GV PN  T V  ++AC+      +   +   I      L+  + TAL+DM+AKC
Sbjct: 253 NDMLRLGVRPNETTWVIVISACSFRADPSLTRSLVKLIDEKRVRLNCFVKTALLDMHAKC 312

Query: 287 GRVEEGVRVFSSV-KEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGV---------- 335
             ++   R+F+ +  ++N+ TWNA+I G         A +LF+ M +  V          
Sbjct: 313 RDIQSARRIFNELGTQRNLVTWNAMISGYTRIGDMSSARQLFDTMPKRNVVSWNSLIAGY 372

Query: 336 ----------------------RADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFI 373
                                 + DEVT+++VLSAC H   +++G  I  ++ + +    
Sbjct: 373 AHNGQAALAIEFFEDMIDYGDSKPDEVTMISVLSACGHMADLELGDCIVDYIRKNQIKL- 431

Query: 374 PNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTK----AMWGSLLVSSKSQGD 423
            N   Y  ++ + AR G+L EA  V     FD  K      + +L  +  + GD
Sbjct: 432 -NDSGYRSLIFMYARGGNLWEAKRV-----FDEMKERDVVSYNTLFTAFAANGD 479



 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/345 (21%), Positives = 134/345 (38%), Gaps = 45/345 (13%)

Query: 147 SAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLC----------RQLFD 196
           S    F Q   +HA ++         V NSL      + R+ S C          R +FD
Sbjct: 14  SQALTFPQLNQIHAQLI---------VFNSLPRQSYWASRIISCCTRLRAPSYYTRLIFD 64

Query: 197 EMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEM 256
            +T  +V     M   F      +D L  +EQ    G+ P+  +    + +     A   
Sbjct: 65  SVTFPNVFVVNSMFKYFSKMDMANDVLRLYEQRSRCGIMPDAFSFPVVIKS-----AGRF 119

Query: 257 GAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLAL 316
           G      + + G+  D  +   ++DMY K   VE   +VF  + ++    WN +I G   
Sbjct: 120 GILFQALVEKLGFFKDPYVRNVIMDMYVKHESVESARKVFDQISQRKGSDWNVMISGYWK 179

Query: 317 AKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNV 376
             + EEA +LF+ M ++    D V+   +++       ++  R+ F  + E       +V
Sbjct: 180 WGNKEEACKLFDMMPEN----DVVSWTVMITGFAKVKDLENARKYFDRMPE------KSV 229

Query: 377 KHYACMVDLLARSGSLREA---FEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARK 433
             +  M+   A++G   +A   F  M  +   P +  W  ++ +   + D   +    R 
Sbjct: 230 VSWNAMLSGYAQNGFTEDALRLFNDMLRLGVRPNETTWVIVISACSFRADPSLT----RS 285

Query: 434 LVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLG 478
           LV+L        V L N + +    D   K R +   R++  +LG
Sbjct: 286 LVKLIDEKR---VRL-NCFVKTALLDMHAKCRDIQSARRIFNELG 326


>AT5G47460.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:19252463-19254193 REVERSE
           LENGTH=576
          Length = 576

 Score =  140 bits (352), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 175/318 (55%), Gaps = 6/318 (1%)

Query: 170 DIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQM 229
           D   +N L+  +  S   F+   Q+  +M + +  SW  ++ G+ N+ K  +A   F +M
Sbjct: 253 DTVTYNELIDAFVKSGD-FNNAFQVLSDMPNPNSSSWNTILTGYVNSEKSGEATEFFTKM 311

Query: 230 QYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRV 289
             +GV  +  ++   LAA A    V  G+ IH    + G +  VV+ +ALIDMY+KCG +
Sbjct: 312 HSSGVRFDEYSLSIVLAAVAALAVVPWGSLIHACAHKLGLDSRVVVASALIDMYSKCGML 371

Query: 290 EEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDG-VRADEVTLLAVLSA 348
           +    +F ++  KN+  WN +I G A      EAI+LFN+++Q+  ++ D  T L +L+ 
Sbjct: 372 KHAELMFWTMPRKNLIVWNEMISGYARNGDSIEAIKLFNQLKQERFLKPDRFTFLNLLAV 431

Query: 349 CNHSGL-VDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPT 407
           C+H  + +++    F  ++  +Y   P+V+H   ++  + + G + +A +V++   F   
Sbjct: 432 CSHCEVPMEVMLGYFEMMIN-EYRIKPSVEHCCSLIRAMGQRGEVWQAKQVIQEFGFGYD 490

Query: 408 KAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVH--LSNLYAEMGRWDDVEKVR 465
              W +LL +  ++ DL+ ++ VA K++EL  A+   Y++  +SNLYA   RW +V ++R
Sbjct: 491 GVAWRALLGACSARKDLKAAKTVAAKMIELGDADKDEYLYIVMSNLYAYHERWREVGQIR 550

Query: 466 GMMKDRQLTKDLGCSSVE 483
            +M++  + K++G S ++
Sbjct: 551 KIMRESGVLKEVGSSWID 568



 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 136/281 (48%), Gaps = 49/281 (17%)

Query: 156 QSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRN 215
           + +H +V K G + +  + NSL+  Y  S  L     ++FDEM   DV+SW  ++ G+  
Sbjct: 75  RQLHGYVTKHGFVSNTRLSNSLMRFYKTSDSLED-AHKVFDEMPDPDVISWNSLVSGYVQ 133

Query: 216 AGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL-DVV 274
           +G+F + +  F ++  + V PN  +   ALAACA      +GA IH  + + G E  +VV
Sbjct: 134 SGRFQEGICLFLELHRSDVFPNEFSFTAALAACARLHLSPLGACIHSKLVKLGLEKGNVV 193

Query: 275 LGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDG 334
           +G  LIDMY KCG +++ V VF  ++EK+  +WNA++                       
Sbjct: 194 VGNCLIDMYGKCGFMDDAVLVFQHMEEKDTVSWNAIV----------------------- 230

Query: 335 VRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLRE 394
                       ++C+ +G +++G   F  +        P+   Y  ++D   +SG    
Sbjct: 231 ------------ASCSRNGKLELGLWFFHQMPN------PDTVTYNELIDAFVKSGDFNN 272

Query: 395 AFEVMRCMPFDPTKAMWGSLL---VSSKSQGDLEFSEFVAR 432
           AF+V+  MP +P  + W ++L   V+S+  G  E +EF  +
Sbjct: 273 AFQVLSDMP-NPNSSSWNTILTGYVNSEKSG--EATEFFTK 310



 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 134/333 (40%), Gaps = 49/333 (14%)

Query: 93  VPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHF 152
           +P P V  +NSL+  +  S      +    +F  +HR+ + PN ++F     +  A  H 
Sbjct: 116 MPDPDVISWNSLVSGYVQSGRFQEGIC---LFLELHRSDVFPNEFSFTAALAA-CARLHL 171

Query: 153 AQ-AQSVHAHVLKLG-HLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMI 210
           +     +H+ ++KLG    ++ V N L+ +Y                             
Sbjct: 172 SPLGACIHSKLVKLGLEKGNVVVGNCLIDMYG---------------------------- 203

Query: 211 MGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWE 270
                 G  DDA+L F+ M+      + V+    +A+C+ +G +E+G W    +      
Sbjct: 204 ----KCGFMDDAVLVFQHME----EKDTVSWNAIVASCSRNGKLELGLWFFHQMPNP--- 252

Query: 271 LDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRM 330
            D V    LID + K G      +V S +   N  +WN ++ G   ++   EA   F +M
Sbjct: 253 -DTVTYNELIDAFVKSGDFNNAFQVLSDMPNPNSSSWNTILTGYVNSEKSGEATEFFTKM 311

Query: 331 EQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSG 390
              GVR DE +L  VL+A     +V  G  I       K G    V   + ++D+ ++ G
Sbjct: 312 HSSGVRFDEYSLSIVLAAVAALAVVPWGSLIHA--CAHKLGLDSRVVVASALIDMYSKCG 369

Query: 391 SLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGD 423
            L+ A  +   MP      +W  ++      GD
Sbjct: 370 MLKHAELMFWTMP-RKNLIVWNEMISGYARNGD 401



 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 102/223 (45%), Gaps = 5/223 (2%)

Query: 205 SWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFI 264
           SW+ ++      G     L A  ++   G  P+   +V+ L    + G V +   +H ++
Sbjct: 23  SWSTIVPALARFGSIG-VLRAAVELINDGEKPDASPLVHLLRVSGNYGYVSLCRQLHGYV 81

Query: 265 RRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAI 324
            ++G+  +  L  +L+  Y     +E+  +VF  + + +V +WN+++ G   +   +E I
Sbjct: 82  TKHGFVSNTRLSNSLMRFYKTSDSLEDAHKVFDEMPDPDVISWNSLVSGYVQSGRFQEGI 141

Query: 325 RLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIP-NVKHYACMV 383
            LF  + +  V  +E +  A L+AC    L  +G  I   LV  K G    NV    C++
Sbjct: 142 CLFLELHRSDVFPNEFSFTAALAACARLHLSPLGACIHSKLV--KLGLEKGNVVVGNCLI 199

Query: 384 DLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEF 426
           D+  + G + +A  V + M    T + W +++ S    G LE 
Sbjct: 200 DMYGKCGFMDDAVLVFQHMEEKDTVS-WNAIVASCSRNGKLEL 241



 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/224 (21%), Positives = 87/224 (38%), Gaps = 30/224 (13%)

Query: 55  AQLILHNLQSNPTIAHHFITVCQSHXXXXXXXXXXXXXVPRPHVFIFNSLIRAFSHSHHH 114
           A L+  +++   T++ + I    S              +P P    +N LI AF  S   
Sbjct: 211 AVLVFQHMEEKDTVSWNAIVASCSRNGKLELGLWFFHQMPNPDTVTYNELIDAFVKSGDF 270

Query: 115 HNSLTPLS----------------------------IFAHMHRNTILPNHYTFPFLFKSL 146
           +N+   LS                             F  MH + +  + Y+   +  ++
Sbjct: 271 NNAFQVLSDMPNPNSSSWNTILTGYVNSEKSGEATEFFTKMHSSGVRFDEYSLSIVLAAV 330

Query: 147 SAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSW 206
           +A         +HA   KLG    + V ++L+ +Y+    L      +F  M  ++++ W
Sbjct: 331 AALAVVPWGSLIHACAHKLGLDSRVVVASALIDMYSKCGML-KHAELMFWTMPRKNLIVW 389

Query: 207 TVMIMGFRNAGKFDDALLAFEQM-QYAGVAPNRVTMVNALAACA 249
             MI G+   G   +A+  F Q+ Q   + P+R T +N LA C+
Sbjct: 390 NEMISGYARNGDSIEAIKLFNQLKQERFLKPDRFTFLNLLAVCS 433


>AT4G18520.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:10215250-10217103 REVERSE
           LENGTH=617
          Length = 617

 Score =  139 bits (350), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 91/325 (28%), Positives = 160/325 (49%), Gaps = 7/325 (2%)

Query: 98  VFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQS 157
           V  + ++I A S   H    +  + +F  M  +  LPN +T   + K+ S        + 
Sbjct: 249 VISWTAVISACSRKGH---GIKAIGMFIGMLNHWFLPNEFTVCSILKACSEEKALRFGRQ 305

Query: 158 VHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAG 217
           VH+ V+K     D++V  SL+ +YA    + S CR++FD M++R+ V+WT +I      G
Sbjct: 306 VHSLVVKRMIKTDVFVGTSLMDMYAKCGEI-SDCRKVFDGMSNRNTVTWTSIIAAHAREG 364

Query: 218 KFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGT 277
             ++A+  F  M+   +  N +T+V+ L AC   GA+ +G  +H  I +N  E +V +G+
Sbjct: 365 FGEEAISLFRIMKRRHLIANNLTVVSILRACGSVGALLLGKELHAQIIKNSIEKNVYIGS 424

Query: 278 ALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRA 337
            L+ +Y KCG   +   V   +  ++V +W A+I G +      EA+     M Q+GV  
Sbjct: 425 TLVWLYCKCGESRDAFNVLQQLPSRDVVSWTAMISGCSSLGHESEALDFLKEMIQEGVEP 484

Query: 338 DEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFE 397
           +  T  + L AC +S  + +GR I    +  K   + NV   + ++ + A+ G + EAF 
Sbjct: 485 NPFTYSSALKACANSESLLIGRSIHS--IAKKNHALSNVFVGSALIHMYAKCGFVSEAFR 542

Query: 398 VMRCMPFDPTKAMWGSLLVSSKSQG 422
           V   MP +     W ++++     G
Sbjct: 543 VFDSMP-EKNLVSWKAMIMGYARNG 566



 Score =  138 bits (347), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 81/233 (34%), Positives = 127/233 (54%), Gaps = 7/233 (3%)

Query: 120 PLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLG 179
            +S+F  M R  ++ N+ T   + ++  +       + +HA ++K     ++Y+ ++L+ 
Sbjct: 369 AISLFRIMKRRHLIANNLTVVSILRACGSVGALLLGKELHAQIIKNSIEKNVYIGSTLVW 428

Query: 180 VY---AASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAP 236
           +Y     S   F++ +QL      RDVVSWT MI G  + G   +AL   ++M   GV P
Sbjct: 429 LYCKCGESRDAFNVLQQL----PSRDVVSWTAMISGCSSLGHESEALDFLKEMIQEGVEP 484

Query: 237 NRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVF 296
           N  T  +AL ACA+S ++ +G  IH   ++N    +V +G+ALI MYAKCG V E  RVF
Sbjct: 485 NPFTYSSALKACANSESLLIGRSIHSIAKKNHALSNVFVGSALIHMYAKCGFVSEAFRVF 544

Query: 297 SSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSAC 349
            S+ EKN+ +W A+I G A      EA++L  RME +G   D+     +LS C
Sbjct: 545 DSMPEKNLVSWKAMIMGYARNGFCREALKLMYRMEAEGFEVDDYIFATILSTC 597



 Score =  137 bits (346), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 157/311 (50%), Gaps = 9/311 (2%)

Query: 133 LPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCR 192
             N   F  L    S    F   + VH +++K+G + ++ V +SL+  YA    L S  R
Sbjct: 181 FTNERMFVCLLNLCSRRAEFELGRQVHGNMVKVG-VGNLIVESSLVYFYAQCGELTSALR 239

Query: 193 QLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSG 252
             FD M  +DV+SWT +I      G    A+  F  M      PN  T+ + L AC++  
Sbjct: 240 A-FDMMEEKDVISWTAVISACSRKGHGIKAIGMFIGMLNHWFLPNEFTVCSILKACSEEK 298

Query: 253 AVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIK 312
           A+  G  +H  + +   + DV +GT+L+DMYAKCG + +  +VF  +  +N  TW ++I 
Sbjct: 299 ALRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNRNTVTWTSIIA 358

Query: 313 GLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGF 372
             A    GEEAI LF  M++  + A+ +T++++L AC   G + +G+++   ++  K   
Sbjct: 359 AHAREGFGEEAISLFRIMKRRHLIANNLTVVSILRACGSVGALLLGKELHAQII--KNSI 416

Query: 373 IPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQG----DLEFSE 428
             NV   + +V L  + G  R+AF V++ +P     + W +++    S G     L+F +
Sbjct: 417 EKNVYIGSTLVWLYCKCGESRDAFNVLQQLPSRDVVS-WTAMISGCSSLGHESEALDFLK 475

Query: 429 FVARKLVELEP 439
            + ++ VE  P
Sbjct: 476 EMIQEGVEPNP 486



 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 130/270 (48%), Gaps = 10/270 (3%)

Query: 156 QSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSL--CRQLFDEMTHRDVVSWTVMIMGF 213
           + +HA  LK      IY  N+L+   ++  RL  L   R++FD M  ++ V+WT MI G+
Sbjct: 102 KRIHAMALKCFDDQVIYFGNNLI---SSCVRLGDLVYARKVFDSMPEKNTVTWTAMIDGY 158

Query: 214 RNAGKFDDALLAFEQMQYAGVA-PNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELD 272
              G  D+A   FE     G+   N    V  L  C+     E+G  +H  + + G   +
Sbjct: 159 LKYGLEDEAFALFEDYVKHGIRFTNERMFVCLLNLCSRRAEFELGRQVHGNMVKVGVG-N 217

Query: 273 VVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQ 332
           +++ ++L+  YA+CG +   +R F  ++EK+V +W AVI   +    G +AI +F  M  
Sbjct: 218 LIVESSLVYFYAQCGELTSALRAFDMMEEKDVISWTAVISACSRKGHGIKAIGMFIGMLN 277

Query: 333 DGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSL 392
                +E T+ ++L AC+    +  GRQ+   +V  K     +V     ++D+ A+ G +
Sbjct: 278 HWFLPNEFTVCSILKACSEEKALRFGRQVHSLVV--KRMIKTDVFVGTSLMDMYAKCGEI 335

Query: 393 REAFEVMRCMPFDPTKAMWGSLLVSSKSQG 422
            +  +V   M  +     W S++ +   +G
Sbjct: 336 SDCRKVFDGMS-NRNTVTWTSIIAAHAREG 364



 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 88/201 (43%), Gaps = 7/201 (3%)

Query: 51  QQIQAQLILHNLQSNPTIAHHFITV-CQSHXXXXXXXXXXXXXVPRPHVFIFNSLIRAFS 109
           +++ AQ+I ++++ N  I    + + C+               +P   V  + ++I   S
Sbjct: 405 KELHAQIIKNSIEKNVYIGSTLVWLYCKC--GESRDAFNVLQQLPSRDVVSWTAMISGCS 462

Query: 110 HSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLH 169
              H   +L  L     M +  + PN +T+    K+ +        +S+H+   K   L 
Sbjct: 463 SLGHESEALDFLK---EMIQEGVEPNPFTYSSALKACANSESLLIGRSIHSIAKKNHALS 519

Query: 170 DIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQM 229
           +++V ++L+ +YA      S   ++FD M  +++VSW  MIMG+   G   +AL    +M
Sbjct: 520 NVFVGSALIHMYAKCG-FVSEAFRVFDSMPEKNLVSWKAMIMGYARNGFCREALKLMYRM 578

Query: 230 QYAGVAPNRVTMVNALAACAD 250
           +  G   +       L+ C D
Sbjct: 579 EAEGFEVDDYIFATILSTCGD 599


>AT1G71460.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:26928247-26930316 REVERSE
           LENGTH=689
          Length = 689

 Score =  129 bits (324), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 148/300 (49%), Gaps = 8/300 (2%)

Query: 98  VFIFNSLIRAFSHSHHHHNSLTPLSIFAHM-HRNTILPNHYTFPFLFKSLSAPCHFAQAQ 156
           + ++ ++I   +H+     +L    +F  M     I PN      +   L         +
Sbjct: 280 IVVWGAMIAGLAHNKRQWEAL---GLFRTMISEEKIYPNSVILTTILPVLGDVKALKLGK 336

Query: 157 SVHAHVLK-LGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRN 215
            VHAHVLK   ++   +VH+ L+ +Y     + S  R++F     R+ +SWT ++ G+  
Sbjct: 337 EVHAHVLKSKNYVEQPFVHSGLIDLYCKCGDMAS-GRRVFYGSKQRNAISWTALMSGYAA 395

Query: 216 AGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVL 275
            G+FD AL +   MQ  G  P+ VT+   L  CA+  A++ G  IH +  +N +  +V L
Sbjct: 396 NGRFDQALRSIVWMQQEGFRPDVVTIATVLPVCAELRAIKQGKEIHCYALKNLFLPNVSL 455

Query: 276 GTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGV 335
            T+L+ MY+KCG  E  +R+F  ++++NV  W A+I            I +F  M     
Sbjct: 456 VTSLMVMYSKCGVPEYPIRLFDRLEQRNVKAWTAMIDCYVENCDLRAGIEVFRLMLLSKH 515

Query: 336 RADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREA 395
           R D VT+  VL+ C+    + +G+++ G +++ ++  IP V   A ++ +  + G LR A
Sbjct: 516 RPDSVTMGRVLTVCSDLKALKLGKELHGHILKKEFESIPFVS--ARIIKMYGKCGDLRSA 573



 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 116/242 (47%), Gaps = 2/242 (0%)

Query: 154 QAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGF 213
           Q + +H + LK   L ++ +  SL+ +Y+    +     +LFD +  R+V +WT MI  +
Sbjct: 436 QGKEIHCYALKNLFLPNVSLVTSLMVMYSKCG-VPEYPIRLFDRLEQRNVKAWTAMIDCY 494

Query: 214 RNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDV 273
                    +  F  M  +   P+ VTM   L  C+D  A+++G  +H  I +  +E   
Sbjct: 495 VENCDLRAGIEVFRLMLLSKHRPDSVTMGRVLTVCSDLKALKLGKELHGHILKKEFESIP 554

Query: 274 VLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQD 333
            +   +I MY KCG +      F +V  K   TW A+I+     +   +AI  F +M   
Sbjct: 555 FVSARIIKMYGKCGDLRSANFSFDAVAVKGSLTWTAIIEAYGCNELFRDAINCFEQMVSR 614

Query: 334 GVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLR 393
           G   +  T  AVLS C+ +G VD   + F  ++   Y   P+ +HY+ +++LL R G + 
Sbjct: 615 GFTPNTFTFTAVLSICSQAGFVDEAYRFFNLMLR-MYNLQPSEEHYSLVIELLNRCGRVE 673

Query: 394 EA 395
           EA
Sbjct: 674 EA 675



 Score =  111 bits (277), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 135/283 (47%), Gaps = 5/283 (1%)

Query: 113 HHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIY 172
             +N    L+I  ++ +  I  N  TF  L ++          + VH H+   G   + +
Sbjct: 88  RQNNLEVALTILDYLEQRGIPVNATTFSALLEACVRRKSLLHGKQVHVHIRINGLESNEF 147

Query: 173 VHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGK--FDDALLAFEQMQ 230
           +   L+ +Y A   +    +++FDE T  +V SW  ++ G   +GK  + D L  F +M+
Sbjct: 148 LRTKLVHMYTACGSVKD-AQKVFDESTSSNVYSWNALLRGTVISGKKRYQDVLSTFTEMR 206

Query: 231 YAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVE 290
             GV  N  ++ N   + A + A+  G   H    +NG    V L T+L+DMY KCG+V 
Sbjct: 207 ELGVDLNVYSLSNVFKSFAGASALRQGLKTHALAIKNGLFNSVFLKTSLVDMYFKCGKVG 266

Query: 291 EGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRM-EQDGVRADEVTLLAVLSAC 349
              RVF  + E+++  W A+I GLA  K   EA+ LF  M  ++ +  + V L  +L   
Sbjct: 267 LARRVFDEIVERDIVVWGAMIAGLAHNKRQWEALGLFRTMISEEKIYPNSVILTTILPVL 326

Query: 350 NHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSL 392
                + +G+++   +++ K  ++     ++ ++DL  + G +
Sbjct: 327 GDVKALKLGKEVHAHVLKSK-NYVEQPFVHSGLIDLYCKCGDM 368



 Score = 72.4 bits (176), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 98/223 (43%), Gaps = 18/223 (8%)

Query: 198 MTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMG 257
           + HRD       I  F      + AL   + ++  G+  N  T    L AC    ++  G
Sbjct: 78  IIHRD-------IQIFARQNNLEVALTILDYLEQRGIPVNATTFSALLEACVRRKSLLHG 130

Query: 258 AWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALA 317
             +H  IR NG E +  L T L+ MY  CG V++  +VF      NV++WNA+++G  ++
Sbjct: 131 KQVHVHIRINGLESNEFLRTKLVHMYTACGSVKDAQKVFDESTSSNVYSWNALLRGTVIS 190

Query: 318 --KSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPN 375
             K  ++ +  F  M + GV  +  +L  V  +   +  +  G +     +  K G   +
Sbjct: 191 GKKRYQDVLSTFTEMRELGVDLNVYSLSNVFKSFAGASALRQGLKTHALAI--KNGLFNS 248

Query: 376 VKHYACMVDLLARSGSL---REAFEVMRCMPFDPTKAMWGSLL 415
           V     +VD+  + G +   R  F+ +     +    +WG+++
Sbjct: 249 VFLKTSLVDMYFKCGKVGLARRVFDEI----VERDIVVWGAMI 287



 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 2/142 (1%)

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFR 214
            + +H H+LK       +V   ++ +Y     L S     FD +  +  ++WT +I  + 
Sbjct: 538 GKELHGHILKKEFESIPFVSARIIKMYGKCGDLRS-ANFSFDAVAVKGSLTWTAIIEAYG 596

Query: 215 NAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAV-EMGAWIHDFIRRNGWELDV 273
               F DA+  FEQM   G  PN  T    L+ C+ +G V E   + +  +R    +   
Sbjct: 597 CNELFRDAINCFEQMVSRGFTPNTFTFTAVLSICSQAGFVDEAYRFFNLMLRMYNLQPSE 656

Query: 274 VLGTALIDMYAKCGRVEEGVRV 295
              + +I++  +CGRVEE  R+
Sbjct: 657 EHYSLVIELLNRCGRVEEAQRL 678


>AT2G31400.1 | Symbols: GUN1 | genomes uncoupled 1 |
           chr2:13387201-13390550 REVERSE LENGTH=918
          Length = 918

 Score =  115 bits (287), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 145/305 (47%), Gaps = 11/305 (3%)

Query: 95  RPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQ 154
           RP++  +N++I A          +     F  M RN + P+  TF  L    S    +  
Sbjct: 300 RPNLVTYNAVIDACGKGGMEFKQVA--KFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEA 357

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRL---FSLCRQLFDEMTHRDVVSWTVMIM 211
           A+++   +       D++ +N+LL       ++   F +  Q+  +    +VVS++ +I 
Sbjct: 358 ARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVID 417

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
           GF  AG+FD+AL  F +M+Y G+A +RV+    L+     G  E    I   +   G + 
Sbjct: 418 GFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKK 477

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEK----NVFTWNAVIKGLALAKSGEEAIRLF 327
           DVV   AL+  Y K G+ +E  +VF+ +K +    N+ T++ +I G +     +EA+ +F
Sbjct: 478 DVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIF 537

Query: 328 NRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLA 387
              +  G+RAD V   A++ A   +GLV     +   +   K G  PNV  Y  ++D   
Sbjct: 538 REFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMT--KEGISPNVVTYNSIIDAFG 595

Query: 388 RSGSL 392
           RS ++
Sbjct: 596 RSATM 600



 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 126/294 (42%), Gaps = 55/294 (18%)

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHR----DVVSWTVMI 210
           A+ +       G+ + +Y  ++L+  Y  S  L      +F+ M       ++V++  +I
Sbjct: 252 AKRIFETAFAGGYGNTVYAFSALISAYGRSG-LHEEAISVFNSMKEYGLRPNLVTYNAVI 310

Query: 211 -------MGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDF 263
                  M F+   KF      F++MQ  GV P+R+T  + LA C+  G  E    + D 
Sbjct: 311 DACGKGGMEFKQVAKF------FDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDE 364

Query: 264 IRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEK----NVFTWNAVIKGLALAKS 319
           +     E DV     L+D   K G+++    + + +  K    NV +++ VI G A A  
Sbjct: 365 MTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGR 424

Query: 320 GEEAIRLFNRMEQDGVRADEV---TLLAVLSACNHS-GLVDMGRQ--------------- 360
            +EA+ LF  M   G+  D V   TLL++ +    S   +D+ R+               
Sbjct: 425 FDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNA 484

Query: 361 -IFGFLVEGKYG-------------FIPNVKHYACMVDLLARSGSLREAFEVMR 400
            + G+  +GKY               +PN+  Y+ ++D  ++ G  +EA E+ R
Sbjct: 485 LLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFR 538



 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 116/270 (42%), Gaps = 46/270 (17%)

Query: 252 GAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKE----KNVFTW 307
           G V +   I +     G+   V   +ALI  Y + G  EE + VF+S+KE     N+ T+
Sbjct: 247 GKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTY 306

Query: 308 NAVIKGLALAKSG---EEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGF 364
           NAVI   A  K G   ++  + F+ M+++GV+ D +T  ++L+ C+  GL +  R +F  
Sbjct: 307 NAVID--ACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDE 364

Query: 365 LVEGKYG---------------------------------FIPNVKHYACMVDLLARSGS 391
           +   +                                    +PNV  Y+ ++D  A++G 
Sbjct: 365 MTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGR 424

Query: 392 LREA---FEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELE-PANSAYYVH 447
             EA   F  MR +     +  + +LL      G  E +  + R++  +    +   Y  
Sbjct: 425 FDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNA 484

Query: 448 LSNLYAEMGRWDDVEKVRGMMKDRQLTKDL 477
           L   Y + G++D+V+KV   MK   +  +L
Sbjct: 485 LLGGYGKQGKYDEVKKVFTEMKREHVLPNL 514


>AT2G15690.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:6831855-6833594 REVERSE
           LENGTH=579
          Length = 579

 Score =  105 bits (263), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 112/210 (53%), Gaps = 1/210 (0%)

Query: 233 GVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEG 292
           G  P+R   V    +CA+  ++E    +HD   ++ +  D  L   +I M+ +C  + + 
Sbjct: 231 GAMPDRECFVLLFESCANLKSLEHSKKVHDHFLQSKFRGDPKLNNMVISMFGECSSITDA 290

Query: 293 VRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHS 352
            RVF  + +K++ +W+ ++   +    G++A+ LF  M + G++ +E T L V  AC   
Sbjct: 291 KRVFDHMVDKDMDSWHLMMCAYSDNGMGDDALHLFEEMTKHGLKPNEETFLTVFLACATV 350

Query: 353 GLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWG 412
           G ++     F  + + ++G  P  +HY  ++ +L + G L EA + +R +PF+PT   W 
Sbjct: 351 GGIEEAFLHFDSM-KNEHGISPKTEHYLGVLGVLGKCGHLVEAEQYIRDLPFEPTADFWE 409

Query: 413 SLLVSSKSQGDLEFSEFVARKLVELEPANS 442
           ++   ++  GD++  +++   +V+++P+ +
Sbjct: 410 AMRNYARLHGDIDLEDYMEELMVDVDPSKA 439



 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 84/181 (46%), Gaps = 5/181 (2%)

Query: 133 LPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCR 192
           +P+   F  LF+S +       ++ VH H L+     D  ++N ++ ++     + +  +
Sbjct: 233 MPDRECFVLLFESCANLKSLEHSKKVHDHFLQSKFRGDPKLNNMVISMFGECSSI-TDAK 291

Query: 193 QLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSG 252
           ++FD M  +D+ SW +M+  + + G  DDAL  FE+M   G+ PN  T +    ACA  G
Sbjct: 292 RVFDHMVDKDMDSWHLMMCAYSDNGMGDDALHLFEEMTKHGLKPNEETFLTVFLACATVG 351

Query: 253 AVEMGAWIHDFIRRN--GWELDVVLGTALIDMYAKCGRVEEGVRVFSSVK-EKNVFTWNA 309
            +E  A++H    +N  G          ++ +  KCG + E  +    +  E     W A
Sbjct: 352 GIEE-AFLHFDSMKNEHGISPKTEHYLGVLGVLGKCGHLVEAEQYIRDLPFEPTADFWEA 410

Query: 310 V 310
           +
Sbjct: 411 M 411


>AT4G32450.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:15661092-15662705 FORWARD
           LENGTH=537
          Length = 537

 Score =  105 bits (262), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 98/177 (55%), Gaps = 3/177 (1%)

Query: 248 CADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTW 307
           C D+ A++    +H+FI  +    D+    ++I+MY+ CG VE+ + VF+S+ E+N+ TW
Sbjct: 191 CGDAQALQEAKVVHEFITSSVGISDISAYNSIIEMYSGCGSVEDALTVFNSMPERNLETW 250

Query: 308 NAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVE 367
             VI+  A    GE+AI  F+R +Q+G + D      +  AC   G ++ G   F  + +
Sbjct: 251 CGVIRCFAKNGQGEDAIDTFSRFKQEGNKPDGEMFKEIFFACGVLGDMNEGLLHFESMYK 310

Query: 368 GKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDL 424
            +YG IP ++HY  +V +LA  G L EA   +  M  +P   +W +L+  S+  GDL
Sbjct: 311 -EYGIIPCMEHYVSLVKMLAEPGYLDEALRFVESM--EPNVDLWETLMNLSRVHGDL 364


>AT1G63330.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23489840-23491519 FORWARD
           LENGTH=559
          Length = 559

 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 133/296 (44%), Gaps = 45/296 (15%)

Query: 95  RPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQ 154
           RP+V  ++SLI          ++   LS    M    I PN  TF  L  +      F +
Sbjct: 217 RPNVVTYSSLISCLCSYGRWSDASQLLS---DMIEKKINPNLVTFNALIDAFVKEGKFVE 273

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRL--------------------------F 188
           A+ +H  ++K     DI+ +NSL+  +    RL                           
Sbjct: 274 AEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIK 333

Query: 189 SLCR--------QLFDEMTHR----DVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAP 236
             C+        +LF EM+HR    D V++T +I G  + G  D+A   F+QM   GV P
Sbjct: 334 GFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPP 393

Query: 237 NRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVF 296
           + +T    L    ++G +E    + D+++++  +LD+ + T +I+   K G+V++G  +F
Sbjct: 394 DIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLF 453

Query: 297 SSVKEK----NVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSA 348
            S+  K    NV T+N +I GL   +  +EA  L  +M++DG   D  T   ++ A
Sbjct: 454 CSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRA 509



 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/324 (22%), Positives = 135/324 (41%), Gaps = 30/324 (9%)

Query: 95  RPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQ 154
           RP    F +LI        H+ +   +++   M +    PN  T+  +   L        
Sbjct: 112 RPDTITFTTLIHGL---FLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDL 168

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCR--------QLFDEMTHR----D 202
           A ++   +       D+ + N+++          SLC+         LF EM  +    +
Sbjct: 169 AFNLLNKMEAAKIEADVVIFNTIID---------SLCKYRHVDDALNLFKEMETKGIRPN 219

Query: 203 VVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHD 262
           VV+++ +I    + G++ DA      M    + PN VT    + A    G       +HD
Sbjct: 220 VVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHD 279

Query: 263 FIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVF----TWNAVIKGLALAK 318
            + +   + D+    +LI+ +    R+++  ++F  +  K+ F    T+N +IKG   +K
Sbjct: 280 DMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSK 339

Query: 319 SGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKH 378
             E+   LF  M   G+  D VT   ++    H G  D  +++F  +V    G  P++  
Sbjct: 340 RVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSD--GVPPDIMT 397

Query: 379 YACMVDLLARSGSLREAFEVMRCM 402
           Y+ ++D L  +G L +A EV   M
Sbjct: 398 YSILLDGLCNNGKLEKALEVFDYM 421



 Score = 82.8 bits (203), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 84/373 (22%), Positives = 152/373 (40%), Gaps = 17/373 (4%)

Query: 98  VFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQS 157
           V IFN++I +     H  ++L   ++F  M    I PN  T+  L   L +   ++ A  
Sbjct: 185 VVIFNTIIDSLCKYRHVDDAL---NLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQ 241

Query: 158 VHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHR----DVVSWTVMIMGF 213
           + + +++     ++   N+L+  +    + F    +L D+M  R    D+ ++  +I GF
Sbjct: 242 LLSDMIEKKINPNLVTFNALIDAFVKEGK-FVEAEKLHDDMIKRSIDPDIFTYNSLINGF 300

Query: 214 RNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDV 273
               + D A   FE M      P+  T    +     S  VE G  +   +   G   D 
Sbjct: 301 CMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDT 360

Query: 274 VLGTALIDMYAKCGRVEEGVRVFSSVKEK----NVFTWNAVIKGLALAKSGEEAIRLFNR 329
           V  T LI      G  +   +VF  +       ++ T++ ++ GL      E+A+ +F+ 
Sbjct: 361 VTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDY 420

Query: 330 MEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARS 389
           M++  ++ D      ++     +G VD G  +F  L     G  PNV  Y  M+  L   
Sbjct: 421 MQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSL--SLKGVKPNVVTYNTMISGLCSK 478

Query: 390 GSLREAFEVMRCMPFD---PTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYV 446
             L+EA+ +++ M  D   P    + +L+ +    GD   S  + R++        A  +
Sbjct: 479 RLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTI 538

Query: 447 HLSNLYAEMGRWD 459
            L       GR D
Sbjct: 539 GLVANMLHDGRLD 551



 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 93/405 (22%), Positives = 164/405 (40%), Gaps = 26/405 (6%)

Query: 94  PRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFA 153
           P P +F FN L+ A +           +S+   M R  I  N YT+  L          +
Sbjct: 6   PLPSIFEFNKLLSAIAKMKKFD---LVISLGEKMQRLGISHNLYTYNILINCFCRRSQIS 62

Query: 154 QAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRL---FSLCRQLFDEMTHR-DVVSWTVM 209
            A ++   ++KLG+   I   +SLL  Y    R+    +L  Q+  EM +R D +++T +
Sbjct: 63  LALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMV-EMGYRPDTITFTTL 121

Query: 210 IMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGW 269
           I G     K  +A+   ++M   G  PN VT    +      G +++   + + +     
Sbjct: 122 IHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKI 181

Query: 270 ELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEK----NVFTWNAVIKGLALAKSGEEAIR 325
           E DVV+   +ID   K   V++ + +F  ++ K    NV T++++I  L       +A +
Sbjct: 182 EADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQ 241

Query: 326 LFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYA----- 380
           L + M +  +  + VT  A++ A    G      ++   ++  K    P++  Y      
Sbjct: 242 LLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMI--KRSIDPDIFTYNSLING 299

Query: 381 -CMVDLLARSGSLREAFEVMRCMP-FDPTKAMWGSLLVSSKSQGDLE-FSEFVARKLVEL 437
            CM D L ++  + E      C P  D    +      S + +   E F E   R LV  
Sbjct: 300 FCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLV-- 357

Query: 438 EPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSV 482
              ++  Y  L       G  D+ +KV   M    +  D+   S+
Sbjct: 358 --GDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSI 400



 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 135/301 (44%), Gaps = 16/301 (5%)

Query: 127 MHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPR 186
           M ++  LP+ + F  L  +++    F    S+   + +LG  H++Y +N L+  +    +
Sbjct: 1   MVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQ 60

Query: 187 LFSLCRQLFDEMT----HRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMV 242
           + SL   L  +M        +V+ + ++ G+ +  +  DA+   +QM   G  P+ +T  
Sbjct: 61  I-SLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFT 119

Query: 243 NALAAC-ADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVK- 300
             +      + A E  A +   ++R G + ++V    +++   K G ++    + + ++ 
Sbjct: 120 TLIHGLFLHNKASEAVALVDRMVQR-GCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEA 178

Query: 301 ---EKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDM 357
              E +V  +N +I  L   +  ++A+ LF  ME  G+R + VT  +++S     G    
Sbjct: 179 AKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSD 238

Query: 358 GRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEV---MRCMPFDPTKAMWGSL 414
             Q+   ++E K    PN+  +  ++D   + G   EA ++   M     DP    + SL
Sbjct: 239 ASQLLSDMIEKKIN--PNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSL 296

Query: 415 L 415
           +
Sbjct: 297 I 297


>AT1G62590.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr1:23177294-23179198 REVERSE LENGTH=634
          Length = 634

 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 125/247 (50%), Gaps = 12/247 (4%)

Query: 96  PHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQA 155
           P++  FN+LI AF         +    ++  M + +I P+ +T+  L           +A
Sbjct: 328 PNLVTFNALIDAFVKEGKF---VEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKA 384

Query: 156 QSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHR----DVVSWTVMIM 211
           + +   ++      D+  +N+L+  +  S R+     +LF EM+HR    D V++T +I 
Sbjct: 385 KQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVED-GTELFREMSHRGLVGDTVTYTTLIQ 443

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
           G  + G  D+A   F+QM   GV P+ +T    L    ++G +E    + D+++++  +L
Sbjct: 444 GLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKL 503

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEK----NVFTWNAVIKGLALAKSGEEAIRLF 327
           D+ + T +I+   K G+V++G  +F S+  K    NV T+N +I GL   +  +EA  L 
Sbjct: 504 DIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALL 563

Query: 328 NRMEQDG 334
            +M++DG
Sbjct: 564 KKMKEDG 570



 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/373 (22%), Positives = 154/373 (41%), Gaps = 17/373 (4%)

Query: 98  VFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQS 157
           V IFN++I +     H  ++L   ++F  M    I PN  T+  L   L +   ++ A  
Sbjct: 260 VVIFNTIIDSLCKYRHVDDAL---NLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQ 316

Query: 158 VHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHR----DVVSWTVMIMGF 213
           + + +++     ++   N+L+  +    + F    +L+D+M  R    D+ ++  ++ GF
Sbjct: 317 LLSDMIEKKINPNLVTFNALIDAFVKEGK-FVEAEKLYDDMIKRSIDPDIFTYNSLVNGF 375

Query: 214 RNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDV 273
               + D A   FE M      P+ VT    +     S  VE G  +   +   G   D 
Sbjct: 376 CMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDT 435

Query: 274 VLGTALIDMYAKCGRVEEGVRVFSSVKEK----NVFTWNAVIKGLALAKSGEEAIRLFNR 329
           V  T LI      G  +   +VF  +       ++ T++ ++ GL      E+A+ +F+ 
Sbjct: 436 VTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDY 495

Query: 330 MEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARS 389
           M++  ++ D      ++     +G VD G  +F  L     G  PNV  Y  M+  L   
Sbjct: 496 MQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSL--SLKGVKPNVVTYNTMISGLCSK 553

Query: 390 GSLREAFEVMRCMPFD---PTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYV 446
             L+EA+ +++ M  D   P    + +L+ +    GD   S  + R++        A  +
Sbjct: 554 RLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTI 613

Query: 447 HLSNLYAEMGRWD 459
            L       GR D
Sbjct: 614 GLVANMLHDGRLD 626



 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 133/329 (40%), Gaps = 44/329 (13%)

Query: 94  PRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFA 153
           P P +  FN L+ A +           +S+   M R  I+   YT+  L          +
Sbjct: 81  PLPSIVEFNKLLSAIAKMKKFD---VVISLGEKMQRLEIVHGLYTYNILINCFCRRSQIS 137

Query: 154 QAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRL---FSLCRQLFDEMTHR-DVVSWTVM 209
            A ++   ++KLG+   I   +SLL  Y    R+    +L  Q+  EM +R D +++T +
Sbjct: 138 LALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMV-EMGYRPDTITFTTL 196

Query: 210 IMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGW 269
           I G     K  +A+   ++M   G  PN VT                G  ++   +R   
Sbjct: 197 IHGLFLHNKASEAVALVDRMVQRGCQPNLVT---------------YGVVVNGLCKRGDT 241

Query: 270 ELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNR 329
           +L + L   +           E  ++     E +V  +N +I  L   +  ++A+ LF  
Sbjct: 242 DLALNLLNKM-----------EAAKI-----EADVVIFNTIIDSLCKYRHVDDALNLFKE 285

Query: 330 MEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARS 389
           ME  G+R + VT  +++S     G      Q+   ++E K    PN+  +  ++D   + 
Sbjct: 286 METKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKIN--PNLVTFNALIDAFVKE 343

Query: 390 GSLREA---FEVMRCMPFDPTKAMWGSLL 415
           G   EA   ++ M     DP    + SL+
Sbjct: 344 GKFVEAEKLYDDMIKRSIDPDIFTYNSLV 372



 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/350 (20%), Positives = 137/350 (39%), Gaps = 49/350 (14%)

Query: 96  PHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQA 155
           P +   +SL+  + H     +++  +     M      P+  TF  L   L      ++A
Sbjct: 153 PSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYR---PDTITFTTLIHGLFLHNKASEA 209

Query: 156 QSVHAHVLKLGHLHDIYVHNSL---LGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMG 212
            ++   +++ G   ++  +  +   L     +    +L  ++       DVV +  +I  
Sbjct: 210 VALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDS 269

Query: 213 FRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAA-CADSGAVEMGAWIHDFIRRNGWEL 271
                  DDAL  F++M+  G+ PN VT  + ++  C+     +    + D I +     
Sbjct: 270 LCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKK-INP 328

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEK----------------------------- 302
           ++V   ALID + K G+  E  +++  + ++                             
Sbjct: 329 NLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMF 388

Query: 303 ----------NVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHS 352
                     +V T+N +IKG   +K  E+   LF  M   G+  D VT   ++    H 
Sbjct: 389 EFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHD 448

Query: 353 GLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCM 402
           G  D  +++F  +V    G  P++  Y+ ++D L  +G L +A EV   M
Sbjct: 449 GDCDNAQKVFKQMVSD--GVPPDIMTYSILLDGLCNNGKLEKALEVFDYM 496


>AT2G25580.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:10888102-10889949 FORWARD
           LENGTH=615
          Length = 615

 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 106/224 (47%), Gaps = 1/224 (0%)

Query: 217 GKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLG 276
           GK   AL   + +       +   ++     C ++  ++    +H  I  +   LD+   
Sbjct: 233 GKVKKALYTIDILASMNYVVDLSRLLRLAKICGEAEGLQEAKTVHGKISASVSHLDLSSN 292

Query: 277 TALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVR 336
             L++MY+ CG   E   VF  + EKN+ TW  +I+  A    GE+AI +F+R +++G  
Sbjct: 293 HVLLEMYSNCGLANEAASVFEKMSEKNLETWCIIIRCFAKNGFGEDAIDMFSRFKEEGNI 352

Query: 337 ADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAF 396
            D      +  AC   G VD G   F  +    YG  P+++ Y  +V++ A  G L EA 
Sbjct: 353 PDGQLFRGIFYACGMLGDVDEGLLHFESMSR-DYGIAPSIEDYVSLVEMYALPGFLDEAL 411

Query: 397 EVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPA 440
           E +  MP +P   +W +L+  S+  G+LE  ++ A  +  L+P 
Sbjct: 412 EFVERMPMEPNVDVWETLMNLSRVHGNLELGDYCAEVVEFLDPT 455


>AT3G53700.1 | Symbols: MEE40 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:19900303-19902567 FORWARD
           LENGTH=754
          Length = 754

 Score =  102 bits (253), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 130/290 (44%), Gaps = 18/290 (6%)

Query: 96  PHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQA 155
           P V  FNSLI+    + +H      + +F  M      P+ +T+  L  SL +     +A
Sbjct: 398 PDVCTFNSLIQGLCLTRNHR---VAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEA 454

Query: 156 QSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEM----THRDVVSWTVMIM 211
            ++   +   G    +  +N+L+  +  + +      ++FDEM      R+ V++  +I 
Sbjct: 455 LNMLKQMELSGCARSVITYNTLIDGFCKANKTRE-AEEIFDEMEVHGVSRNSVTYNTLID 513

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
           G   + + +DA    +QM   G  P++ T  + L      G ++  A I   +  NG E 
Sbjct: 514 GLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEP 573

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNV----FTWNAVIKGLALAKSGEEAIRLF 327
           D+V    LI    K GRVE   ++  S++ K +      +N VI+GL   +   EAI LF
Sbjct: 574 DIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLF 633

Query: 328 NRM-EQDGVRADEVTLLAVLSA-CNHSGLVDMGRQIFGFLVE-GKYGFIP 374
             M EQ+    D V+   V    CN  G +   R+   FLVE  + GF+P
Sbjct: 634 REMLEQNEAPPDAVSYRIVFRGLCNGGGPI---REAVDFLVELLEKGFVP 680



 Score = 79.0 bits (193), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 75/373 (20%), Positives = 155/373 (41%), Gaps = 38/373 (10%)

Query: 128 HRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRL 187
           +++   P+ YTF  L   L    H   A  +   +L+ G+  D+Y +NS++         
Sbjct: 287 NQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVIS-------- 338

Query: 188 FSLCR--------QLFDEMTHRD----VVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVA 235
             LC+        ++ D+M  RD     V++  +I       + ++A      +   G+ 
Sbjct: 339 -GLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGIL 397

Query: 236 PNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRV 295
           P+  T  + +     +    +   + + +R  G E D      LID     G+++E + +
Sbjct: 398 PDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNM 457

Query: 296 FSSVK----EKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSA-CN 350
              ++     ++V T+N +I G   A    EA  +F+ ME  GV  + VT   ++   C 
Sbjct: 458 LKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCK 517

Query: 351 HSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPF---DPT 407
              + D  + +   ++EG+    P+   Y  ++    R G +++A ++++ M     +P 
Sbjct: 518 SRRVEDAAQLMDQMIMEGQK---PDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPD 574

Query: 408 KAMWGSLLVSSKSQGDLEFSEFVAR----KLVELEPANSAYYVHLSNLYAEMGRWDDVEK 463
              +G+L+      G +E +  + R    K + L P   AY   +  L+ +    + +  
Sbjct: 575 IVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTP--HAYNPVIQGLFRKRKTTEAINL 632

Query: 464 VRGMMKDRQLTKD 476
            R M++  +   D
Sbjct: 633 FREMLEQNEAPPD 645


>AT1G63080.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23388884-23390728 REVERSE
           LENGTH=614
          Length = 614

 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 124/261 (47%), Gaps = 12/261 (4%)

Query: 96  PHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQA 155
           P+V  FNSLI AF+        +    +F  M + +I PN  T+  L           +A
Sbjct: 308 PNVVTFNSLIDAFAK---EGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEA 364

Query: 156 QSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHR----DVVSWTVMIM 211
           Q +   ++    L D+  +N+L+  +  + ++     +LF +M+ R    + V++T +I 
Sbjct: 365 QQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVD-GMELFRDMSRRGLVGNTVTYTTLIH 423

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
           GF  A   D+A + F+QM   GV PN +T    L     +G +E    + ++++++  E 
Sbjct: 424 GFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEP 483

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEK----NVFTWNAVIKGLALAKSGEEAIRLF 327
           D+     + +   K G+VE+G  +F S+  K    +V  +N +I G       EEA  LF
Sbjct: 484 DIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLF 543

Query: 328 NRMEQDGVRADEVTLLAVLSA 348
            +M++DG   D  T   ++ A
Sbjct: 544 IKMKEDGPLPDSGTYNTLIRA 564



 Score = 82.0 bits (201), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 136/316 (43%), Gaps = 14/316 (4%)

Query: 95  RPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQ 154
           RP VF ++SLI    +     ++   LS    M    I PN  TF  L  + +      +
Sbjct: 272 RPDVFTYSSLISCLCNYGRWSDASRLLS---DMLERKINPNVVTFNSLIDAFAKEGKLIE 328

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRD----VVSWTVMI 210
           A+ +   +++     +I  +NSL+  +    RL    +Q+F  M  +D    VV++  +I
Sbjct: 329 AEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRL-DEAQQIFTLMVSKDCLPDVVTYNTLI 387

Query: 211 MGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWE 270
            GF  A K  D +  F  M   G+  N VT    +     +   +    +   +  +G  
Sbjct: 388 NGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVH 447

Query: 271 LDVVLGTALIDMYAKCGRVEEGVRVF----SSVKEKNVFTWNAVIKGLALAKSGEEAIRL 326
            +++    L+D   K G++E+ + VF     S  E +++T+N + +G+  A   E+   L
Sbjct: 448 PNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDL 507

Query: 327 FNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLL 386
           F  +   GV+ D +    ++S     GL +    +F  + E   G +P+   Y  ++   
Sbjct: 508 FCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKED--GPLPDSGTYNTLIRAH 565

Query: 387 ARSGSLREAFEVMRCM 402
            R G    + E+++ M
Sbjct: 566 LRDGDKAASAELIKEM 581



 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 151/373 (40%), Gaps = 17/373 (4%)

Query: 98  VFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQS 157
           V I++++I +     H  ++L   ++F  M    I P+ +T+  L   L     ++ A  
Sbjct: 240 VVIYSTVIDSLCKYRHVDDAL---NLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASR 296

Query: 158 VHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHR----DVVSWTVMIMGF 213
           + + +L+     ++   NSL+  +A   +L     +LFDEM  R    ++V++  +I GF
Sbjct: 297 LLSDMLERKINPNVVTFNSLIDAFAKEGKLIE-AEKLFDEMIQRSIDPNIVTYNSLINGF 355

Query: 214 RNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDV 273
               + D+A   F  M      P+ VT    +     +  V  G  +   + R G   + 
Sbjct: 356 CMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNT 415

Query: 274 VLGTALIDMYAKCGRVEEGVRVFSSVKEK----NVFTWNAVIKGLALAKSGEEAIRLFNR 329
           V  T LI  + +    +    VF  +       N+ T+N ++ GL      E+A+ +F  
Sbjct: 416 VTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEY 475

Query: 330 MEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARS 389
           +++  +  D  T   +      +G V+ G  +F  L     G  P+V  Y  M+    + 
Sbjct: 476 LQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSL--SLKGVKPDVIAYNTMISGFCKK 533

Query: 390 GSLREAFEVMRCMPFD---PTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYV 446
           G   EA+ +   M  D   P    + +L+ +    GD   S  + +++     A  A   
Sbjct: 534 GLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTY 593

Query: 447 HLSNLYAEMGRWD 459
            L       GR D
Sbjct: 594 GLVTDMLHDGRLD 606



 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/316 (21%), Positives = 135/316 (42%), Gaps = 12/316 (3%)

Query: 94  PRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFA 153
           P P +  F+ L+ A +           +S    M    +  N YT+  +   L      +
Sbjct: 61  PFPSIVEFSKLLSAIAKMKKFD---LVISFGEKMEILGVSHNLYTYNIMINCLCRRSQLS 117

Query: 154 QAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRL---FSLCRQLFDEMTHRDVVSWTVMI 210
            A ++   ++KLG+   I   NSLL  +    R+    +L  Q+ +     D V++T ++
Sbjct: 118 FALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLV 177

Query: 211 MGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWE 270
            G     K  +A+   E+M   G  P+ VT    +      G  ++   + + + +   E
Sbjct: 178 HGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIE 237

Query: 271 LDVVLGTALIDMYAKCGRVEEGVRVFSSVKEK----NVFTWNAVIKGLALAKSGEEAIRL 326
            DVV+ + +ID   K   V++ + +F+ +  K    +VFT++++I  L       +A RL
Sbjct: 238 ADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRL 297

Query: 327 FNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLL 386
            + M +  +  + VT  +++ A    G +    ++F  +++      PN+  Y  +++  
Sbjct: 298 LSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQ--RSIDPNIVTYNSLINGF 355

Query: 387 ARSGSLREAFEVMRCM 402
                L EA ++   M
Sbjct: 356 CMHDRLDEAQQIFTLM 371


>AT1G29710.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:10387673-10389100 FORWARD
           LENGTH=475
          Length = 475

 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 111/220 (50%), Gaps = 2/220 (0%)

Query: 217 GKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLG 276
           G + +A+   + ++  G A + + ++     C    A+E    +H+ I       DV   
Sbjct: 98  GNWREAVEVLDYLENKGYAMDLIRLLGLAKLCGKPEALEAARVVHECIIALVSPCDVGAR 157

Query: 277 TALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVR 336
            A+I+MY+ C  V++ ++VF  + E N  T   +++       GEEAI LF R +++G +
Sbjct: 158 NAIIEMYSGCCSVDDALKVFEEMPEWNSGTLCVMMRCFVNNGYGEEAIDLFTRFKEEGNK 217

Query: 337 ADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAF 396
            +      V S C  +G V  G   F  +   +YG +P+++HY  +  +LA SG L EA 
Sbjct: 218 PNGEIFNQVFSTCTLTGDVKEGSLQFQAMYR-EYGIVPSMEHYHSVTKMLATSGHLDEAL 276

Query: 397 EVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVE 436
             +  MP +P+  +W +L+  S+  GD+E  +  A +LVE
Sbjct: 277 NFVERMPMEPSVDVWETLMNLSRVHGDVELGDRCA-ELVE 315


>AT1G62680.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23208247-23209893 REVERSE
           LENGTH=548
          Length = 548

 Score = 99.4 bits (246), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 124/255 (48%), Gaps = 12/255 (4%)

Query: 96  PHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQA 155
           P+V  +++L+ AF     +   L    +F  M R +I P+  T+  L   L       +A
Sbjct: 258 PNVITYSALLDAFVK---NGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEA 314

Query: 156 QSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTV----MIM 211
             +   ++  G L D+  +N+L+  +  + R+     +LF EM+ R +VS TV    +I 
Sbjct: 315 NQMFDLMVSKGCLADVVSYNTLINGFCKAKRVED-GMKLFREMSQRGLVSNTVTYNTLIQ 373

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
           GF  AG  D A   F QM + G++P+  T    L    D+G +E    I + +++   +L
Sbjct: 374 GFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDL 433

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEK----NVFTWNAVIKGLALAKSGEEAIRLF 327
           D+V  T +I    K G+VEE   +F S+  K    ++ T+  ++ GL       E   L+
Sbjct: 434 DIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALY 493

Query: 328 NRMEQDGVRADEVTL 342
            +M+Q+G+  ++ TL
Sbjct: 494 TKMKQEGLMKNDCTL 508



 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 90/394 (22%), Positives = 173/394 (43%), Gaps = 18/394 (4%)

Query: 95  RPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQ 154
           R  ++ FN +I  F            LSI   M +    P+  T   L          + 
Sbjct: 117 RNDLYTFNIVINCFCCCFQVS---LALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSD 173

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRL---FSLCRQLFDEMTHRDVVSWTVMIM 211
           A S+   ++++G+  DI  +N+++     + R+   F   +++  +    +VV++T ++ 
Sbjct: 174 AVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVN 233

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
           G  N+ ++ DA      M    + PN +T    L A   +G V     + + + R   + 
Sbjct: 234 GLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDP 293

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEK----NVFTWNAVIKGLALAKSGEEAIRLF 327
           D+V  ++LI+      R++E  ++F  +  K    +V ++N +I G   AK  E+ ++LF
Sbjct: 294 DIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLF 353

Query: 328 NRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLA 387
             M Q G+ ++ VT   ++     +G VD  ++ F  +    +G  P++  Y  ++  L 
Sbjct: 354 REMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQM--DFFGISPDIWTYNILLGGLC 411

Query: 388 RSGSLREA---FEVMRCMPFDPTKAMWGSLLVSSKSQGDLE--FSEFVARKLVELEPANS 442
            +G L +A   FE M+    D     + +++      G +E  +S F +  L  L+P   
Sbjct: 412 DNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIV 471

Query: 443 AYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKD 476
            Y   +S L  + G   +VE +   MK   L K+
Sbjct: 472 TYTTMMSGLCTK-GLLHEVEALYTKMKQEGLMKN 504


>AT1G05670.2 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:1698574-1700799 REVERSE
           LENGTH=741
          Length = 741

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 135/284 (47%), Gaps = 11/284 (3%)

Query: 127 MHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPR 186
           M R  + PN Y +  +   L   C  A+A+   + +++ G L D  V+ +L+  +     
Sbjct: 307 MKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGD 366

Query: 187 LFSLCRQLFDEMTHRD----VVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMV 242
           + +   + F EM  RD    V+++T +I GF   G   +A   F +M   G+ P+ VT  
Sbjct: 367 IRA-ASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFT 425

Query: 243 NALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSV--- 299
             +     +G ++    +H+ + + G   +VV  T LID   K G ++    +   +   
Sbjct: 426 ELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKI 485

Query: 300 -KEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMG 358
             + N+FT+N+++ GL  + + EEA++L    E  G+ AD VT   ++ A   SG +D  
Sbjct: 486 GLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKA 545

Query: 359 RQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCM 402
           ++I   ++ GK G  P +  +  +++     G L +  +++  M
Sbjct: 546 QEILKEML-GK-GLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWM 587



 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 123/285 (43%), Gaps = 20/285 (7%)

Query: 202 DVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALA-ACADSGAVEMGAWI 260
           DV+S++ ++ G+   G+ D      E M+  G+ PN     + +   C      E     
Sbjct: 280 DVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAF 339

Query: 261 HDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEK----NVFTWNAVIKGLAL 316
            + IR+ G   D V+ T LID + K G +    + F  +  +    +V T+ A+I G   
Sbjct: 340 SEMIRQ-GILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQ 398

Query: 317 AKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNV 376
                EA +LF+ M   G+  D VT   +++    +G +    ++   +++   G  PNV
Sbjct: 399 IGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQA--GCSPNV 456

Query: 377 KHYACMVDLLARSGSLREAFEVMRCM---PFDPTKAMWGSLLVSSKSQGDLEFSEFVARK 433
             Y  ++D L + G L  A E++  M      P    + S++      G++E     A K
Sbjct: 457 VTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIE----EAVK 512

Query: 434 LV-ELEP----ANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQL 473
           LV E E     A++  Y  L + Y + G  D  +++   M  + L
Sbjct: 513 LVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGL 557



 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 66/316 (20%), Positives = 129/316 (40%), Gaps = 17/316 (5%)

Query: 96  PHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQA 155
           P V  + ++I  F       + +    +F  M    + P+  TF  L        H   A
Sbjct: 384 PDVLTYTAIISGFCQIG---DMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDA 440

Query: 156 QSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEM----THRDVVSWTVMIM 211
             VH H+++ G   ++  + +L+        L S   +L  EM       ++ ++  ++ 
Sbjct: 441 FRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDS-ANELLHEMWKIGLQPNIFTYNSIVN 499

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
           G   +G  ++A+    + + AG+  + VT    + A   SG ++    I   +   G + 
Sbjct: 500 GLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQP 559

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEK----NVFTWNAVIKGLALAKSGEEAIRLF 327
            +V    L++ +   G +E+G ++ + +  K    N  T+N+++K   +  + + A  ++
Sbjct: 560 TIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIY 619

Query: 328 NRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVD-LL 386
             M   GV  D  T   ++    H    +M    F F      GF  +V  Y+ ++   L
Sbjct: 620 KDMCSRGVGPDGKTYENLVKG--HCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFL 677

Query: 387 ARSGSL--REAFEVMR 400
            R   L  RE F+ MR
Sbjct: 678 KRKKFLEAREVFDQMR 693



 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/252 (20%), Positives = 103/252 (40%), Gaps = 12/252 (4%)

Query: 96  PHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQA 155
           P+V  + +LI          ++     +   M +  + PN +T+  +   L    +  +A
Sbjct: 454 PNVVTYTTLIDGLCKEGDLDSAN---ELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEA 510

Query: 156 QSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHR----DVVSWTVMIM 211
             +       G   D   + +L+  Y  S  +    +++  EM  +     +V++ V++ 
Sbjct: 511 VKLVGEFEAAGLNADTVTYTTLMDAYCKSGEM-DKAQEILKEMLGKGLQPTIVTFNVLMN 569

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
           GF   G  +D       M   G+APN  T  + +        ++    I+  +   G   
Sbjct: 570 GFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGP 629

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEK----NVFTWNAVIKGLALAKSGEEAIRLF 327
           D      L+  + K   ++E   +F  +K K    +V T++ +IKG    K   EA  +F
Sbjct: 630 DGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVF 689

Query: 328 NRMEQDGVRADE 339
           ++M ++G+ AD+
Sbjct: 690 DQMRREGLAADK 701


>AT1G05670.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:1698574-1700799 REVERSE
           LENGTH=741
          Length = 741

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 135/284 (47%), Gaps = 11/284 (3%)

Query: 127 MHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPR 186
           M R  + PN Y +  +   L   C  A+A+   + +++ G L D  V+ +L+  +     
Sbjct: 307 MKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGD 366

Query: 187 LFSLCRQLFDEMTHRD----VVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMV 242
           + +   + F EM  RD    V+++T +I GF   G   +A   F +M   G+ P+ VT  
Sbjct: 367 IRA-ASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFT 425

Query: 243 NALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSV--- 299
             +     +G ++    +H+ + + G   +VV  T LID   K G ++    +   +   
Sbjct: 426 ELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKI 485

Query: 300 -KEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMG 358
             + N+FT+N+++ GL  + + EEA++L    E  G+ AD VT   ++ A   SG +D  
Sbjct: 486 GLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKA 545

Query: 359 RQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCM 402
           ++I   ++ GK G  P +  +  +++     G L +  +++  M
Sbjct: 546 QEILKEML-GK-GLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWM 587



 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 123/285 (43%), Gaps = 20/285 (7%)

Query: 202 DVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALA-ACADSGAVEMGAWI 260
           DV+S++ ++ G+   G+ D      E M+  G+ PN     + +   C      E     
Sbjct: 280 DVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAF 339

Query: 261 HDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEK----NVFTWNAVIKGLAL 316
            + IR+ G   D V+ T LID + K G +    + F  +  +    +V T+ A+I G   
Sbjct: 340 SEMIRQ-GILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQ 398

Query: 317 AKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNV 376
                EA +LF+ M   G+  D VT   +++    +G +    ++   +++   G  PNV
Sbjct: 399 IGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQA--GCSPNV 456

Query: 377 KHYACMVDLLARSGSLREAFEVMRCM---PFDPTKAMWGSLLVSSKSQGDLEFSEFVARK 433
             Y  ++D L + G L  A E++  M      P    + S++      G++E     A K
Sbjct: 457 VTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIE----EAVK 512

Query: 434 LV-ELEP----ANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQL 473
           LV E E     A++  Y  L + Y + G  D  +++   M  + L
Sbjct: 513 LVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGL 557



 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 66/316 (20%), Positives = 129/316 (40%), Gaps = 17/316 (5%)

Query: 96  PHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQA 155
           P V  + ++I  F       + +    +F  M    + P+  TF  L        H   A
Sbjct: 384 PDVLTYTAIISGFCQIG---DMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDA 440

Query: 156 QSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEM----THRDVVSWTVMIM 211
             VH H+++ G   ++  + +L+        L S   +L  EM       ++ ++  ++ 
Sbjct: 441 FRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDS-ANELLHEMWKIGLQPNIFTYNSIVN 499

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
           G   +G  ++A+    + + AG+  + VT    + A   SG ++    I   +   G + 
Sbjct: 500 GLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQP 559

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEK----NVFTWNAVIKGLALAKSGEEAIRLF 327
            +V    L++ +   G +E+G ++ + +  K    N  T+N+++K   +  + + A  ++
Sbjct: 560 TIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIY 619

Query: 328 NRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVD-LL 386
             M   GV  D  T   ++    H    +M    F F      GF  +V  Y+ ++   L
Sbjct: 620 KDMCSRGVGPDGKTYENLVKG--HCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFL 677

Query: 387 ARSGSL--REAFEVMR 400
            R   L  RE F+ MR
Sbjct: 678 KRKKFLEAREVFDQMR 693



 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/252 (20%), Positives = 103/252 (40%), Gaps = 12/252 (4%)

Query: 96  PHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQA 155
           P+V  + +LI          ++     +   M +  + PN +T+  +   L    +  +A
Sbjct: 454 PNVVTYTTLIDGLCKEGDLDSAN---ELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEA 510

Query: 156 QSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHR----DVVSWTVMIM 211
             +       G   D   + +L+  Y  S  +    +++  EM  +     +V++ V++ 
Sbjct: 511 VKLVGEFEAAGLNADTVTYTTLMDAYCKSGEM-DKAQEILKEMLGKGLQPTIVTFNVLMN 569

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
           GF   G  +D       M   G+APN  T  + +        ++    I+  +   G   
Sbjct: 570 GFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGP 629

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEK----NVFTWNAVIKGLALAKSGEEAIRLF 327
           D      L+  + K   ++E   +F  +K K    +V T++ +IKG    K   EA  +F
Sbjct: 630 DGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVF 689

Query: 328 NRMEQDGVRADE 339
           ++M ++G+ AD+
Sbjct: 690 DQMRREGLAADK 701


>AT1G63070.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr1:23385324-23387167 REVERSE LENGTH=590
          Length = 590

 Score = 95.5 bits (236), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 120/249 (48%), Gaps = 13/249 (5%)

Query: 95  RPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQ 154
           +P VF +N LI    +     ++   LS    M    I P+   F  L  +        +
Sbjct: 282 KPDVFTYNPLISCLCNYGRWSDASRLLS---DMLEKNINPDLVFFNALIDAFVKEGKLVE 338

Query: 155 AQSVHAHVLKLGH-LHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHR----DVVSWTVM 209
           A+ ++  ++K  H   D+  +N+L+  +    R+     ++F EM+ R    + V++T +
Sbjct: 339 AEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRV-EEGMEVFREMSQRGLVGNTVTYTTL 397

Query: 210 IMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGW 269
           I GF  A   D+A + F+QM   GV P+ +T    L    ++G VE    + +++++   
Sbjct: 398 IHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDM 457

Query: 270 ELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEK----NVFTWNAVIKGLALAKSGEEAIR 325
           +LD+V  T +I+   K G+VE+G  +F S+  K    NV T+  ++ G       EEA  
Sbjct: 458 KLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADA 517

Query: 326 LFNRMEQDG 334
           LF  M++DG
Sbjct: 518 LFVEMKEDG 526



 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 135/316 (42%), Gaps = 11/316 (3%)

Query: 94  PRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFA 153
           P P +  F+ L+ A +  +        +S+   M    I  N YT+             +
Sbjct: 71  PFPSIVEFSKLLSAIAKMNKFD---LVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLS 127

Query: 154 QAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRL---FSLCRQLFDEMTHRDVVSWTVMI 210
            A ++   ++KLG+   I   NSLL  +    R+    +L  Q+ +     D V++T ++
Sbjct: 128 LALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLV 187

Query: 211 MGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWE 270
            G     K  +A+   E+M   G  P+ VT    +      G  ++   + + + +   E
Sbjct: 188 HGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIE 247

Query: 271 LDVVLGTALIDMYAKCGRVEEGVRVFSSVKEK----NVFTWNAVIKGLALAKSGEEAIRL 326
            DVV+   +ID   K   +++   +F+ ++ K    +VFT+N +I  L       +A RL
Sbjct: 248 ADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRL 307

Query: 327 FNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLL 386
            + M +  +  D V   A++ A    G +    +++  +V+ K+ F P+V  Y  ++   
Sbjct: 308 LSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCF-PDVVAYNTLIKGF 366

Query: 387 ARSGSLREAFEVMRCM 402
            +   + E  EV R M
Sbjct: 367 CKYKRVEEGMEVFREM 382


>AT1G63130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:23412854-23414746 FORWARD
           LENGTH=630
          Length = 630

 Score = 95.1 bits (235), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 131/296 (44%), Gaps = 45/296 (15%)

Query: 95  RPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQ 154
           RP+V  +NSLIR   +     ++   LS    M    I PN  TF  L  +        +
Sbjct: 288 RPNVVTYNSLIRCLCNYGRWSDASRLLS---DMIERKINPNVVTFSALIDAFVKEGKLVE 344

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRL------FSL------------------ 190
           A+ ++  ++K     DI+ ++SL+  +    RL      F L                  
Sbjct: 345 AEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIK 404

Query: 191 --CR--------QLFDEMTHR----DVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAP 236
             C+        +LF EM+ R    + V++T +I GF  A + D+A + F+QM   GV P
Sbjct: 405 GFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLP 464

Query: 237 NRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVF 296
           + +T    L    ++G VE    + ++++R+  E D+     +I+   K G+VE+G  +F
Sbjct: 465 DIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLF 524

Query: 297 SSVKEK----NVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSA 348
            S+  K    NV T+  ++ G       EEA  LF  M+++G   D  T   ++ A
Sbjct: 525 CSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRA 580



 Score = 79.0 bits (193), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 82/397 (20%), Positives = 167/397 (42%), Gaps = 20/397 (5%)

Query: 95  RPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQ 154
           +P  F FN+LI        H+ +   +++   M      P+  T+  +   L        
Sbjct: 183 QPDSFTFNTLIHGL---FRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDL 239

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHR----DVVSWTVMI 210
           A S+   + +      + ++N+++        + +    LF EM ++    +VV++  +I
Sbjct: 240 ALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNV-NDALNLFTEMDNKGIRPNVVTYNSLI 298

Query: 211 MGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWE 270
               N G++ DA      M    + PN VT    + A    G +     ++D + +   +
Sbjct: 299 RCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID 358

Query: 271 LDVVLGTALIDMYAKCGRVEEGVRVFSSVKEK----NVFTWNAVIKGLALAKSGEEAIRL 326
            D+   ++LI+ +    R++E   +F  +  K    NV T+N +IKG   AK  +E + L
Sbjct: 359 PDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMEL 418

Query: 327 FNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLL 386
           F  M Q G+  + VT   ++     +   D  + +F  +V    G +P++  Y+ ++D L
Sbjct: 419 FREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSD--GVLPDIMTYSILLDGL 476

Query: 387 ARSGSLREA---FEVMRCMPFDPTKAMWGSLLVSSKSQGDLE--FSEFVARKLVELEPAN 441
             +G +  A   FE ++    +P    +  ++      G +E  +  F +  L  ++P N
Sbjct: 477 CNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKP-N 535

Query: 442 SAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLG 478
              Y  + + +   G  ++ + +   MK+     D G
Sbjct: 536 VVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSG 572



 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/329 (23%), Positives = 137/329 (41%), Gaps = 44/329 (13%)

Query: 94  PRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFA 153
           P P +  F+ L+ A +  +        +S+   M    I  N YT+  L          +
Sbjct: 77  PFPSIVEFSKLLSAIAKMNKFD---LVISLGEQMQNLGISHNLYTYSILINCFCRRSQLS 133

Query: 154 QAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRL---FSLCRQLFDEMTHRDVVSWTVMI 210
            A +V A ++KLG+  DI   NSLL  +    R+    SL  Q+ +     D  ++  +I
Sbjct: 134 LALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLI 193

Query: 211 MGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWE 270
            G     +  +A+   ++M   G  P+ VT                G  ++   +R    
Sbjct: 194 HGLFRHNRASEAVALVDRMVVKGCQPDLVT---------------YGIVVNGLCKRG--- 235

Query: 271 LDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRM 330
            D+ L  +L+    + G++E GV +           +N +I  L   K+  +A+ LF  M
Sbjct: 236 -DIDLALSLLKKMEQ-GKIEPGVVI-----------YNTIIDALCNYKNVNDALNLFTEM 282

Query: 331 EQDGVRADEVTLLAVLSA-CNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARS 389
           +  G+R + VT  +++   CN+    D  R +   ++E K    PNV  ++ ++D   + 
Sbjct: 283 DNKGIRPNVVTYNSLIRCLCNYGRWSDASR-LLSDMIERKIN--PNVVTFSALIDAFVKE 339

Query: 390 GSLREA---FEVMRCMPFDPTKAMWGSLL 415
           G L EA   ++ M     DP    + SL+
Sbjct: 340 GKLVEAEKLYDEMIKRSIDPDIFTYSSLI 368



 Score = 62.0 bits (149), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 62/287 (21%), Positives = 118/287 (41%), Gaps = 18/287 (6%)

Query: 203 VVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHD 262
           +V ++ ++       KFD  +   EQMQ  G++ N  T    +        + +   +  
Sbjct: 81  IVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAVLA 140

Query: 263 FIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKE----KNVFTWNAVIKGLALAK 318
            + + G+E D+V   +L++ +    R+ + V +   + E     + FT+N +I GL    
Sbjct: 141 KMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHN 200

Query: 319 SGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKH 378
              EA+ L +RM   G + D VT   V++     G +D+   +   + +GK    P V  
Sbjct: 201 RASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGK--IEPGVVI 258

Query: 379 YACMVDLLARSGSLREA---FEVMRCMPFDPTKAMWGSLL-----VSSKSQGDLEFSEFV 430
           Y  ++D L    ++ +A   F  M      P    + SL+         S      S+ +
Sbjct: 259 YNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMI 318

Query: 431 ARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDL 477
            RK+      N   +  L + + + G+  + EK+   M  R +  D+
Sbjct: 319 ERKI----NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 361


>AT5G16640.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:5461031-5462545 FORWARD
           LENGTH=504
          Length = 504

 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 116/252 (46%), Gaps = 12/252 (4%)

Query: 96  PHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQA 155
           P VF FN+LI A         +      +  M R ++ P+  T+  L   L       +A
Sbjct: 254 PDVFTFNALIDACVKEGRVSEAE---EFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEA 310

Query: 156 QSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVV----SWTVMIM 211
           + +   ++  G   D+  ++ L+  Y  S ++     +LF EM+ R VV    ++T++I 
Sbjct: 311 EEMFGFMVSKGCFPDVVTYSILINGYCKSKKV-EHGMKLFCEMSQRGVVRNTVTYTILIQ 369

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
           G+  AGK + A   F +M + GV PN +T    L    D+G +E    I   +++NG + 
Sbjct: 370 GYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDA 429

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVF--TWNAVIKGLALAKSG--EEAIRLF 327
           D+V    +I    K G V +   ++ S+  + +    W      L L K G   EA  LF
Sbjct: 430 DIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREADALF 489

Query: 328 NRMEQDGVRADE 339
            +M++DG+  +E
Sbjct: 490 RKMKEDGILPNE 501



 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 146/320 (45%), Gaps = 16/320 (5%)

Query: 95  RPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQ 154
           +P+V I+N++I     S    N+L  L+    M ++ I P+  T+  L   L +   ++ 
Sbjct: 183 KPNVVIYNTIIDGLCKSKQVDNALDLLN---RMEKDGIGPDVVTYNSLISGLCSSGRWSD 239

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHR----DVVSWTVMI 210
           A  + + + K     D++  N+L+       R+ S   + ++EM  R    D+V+++++I
Sbjct: 240 ATRMVSCMTKREIYPDVFTFNALIDACVKEGRV-SEAEEFYEEMIRRSLDPDIVTYSLLI 298

Query: 211 MGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWE 270
            G     + D+A   F  M   G  P+ VT    +     S  VE G  +   + + G  
Sbjct: 299 YGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVV 358

Query: 271 LDVVLGTALIDMYAKCGRV---EEGVR--VFSSVKEKNVFTWNAVIKGLALAKSGEEAIR 325
            + V  T LI  Y + G++   EE  R  VF  V   N+ T+N ++ GL      E+A+ 
Sbjct: 359 RNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGV-HPNIITYNVLLHGLCDNGKIEKALV 417

Query: 326 LFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDL 385
           +   M+++G+ AD VT   ++     +G V     I+  L     G +P++  Y  M+  
Sbjct: 418 ILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSL--NCQGLMPDIWTYTTMMLG 475

Query: 386 LARSGSLREAFEVMRCMPFD 405
           L + G  REA  + R M  D
Sbjct: 476 LYKKGLRREADALFRKMKED 495



 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 132/319 (41%), Gaps = 14/319 (4%)

Query: 94  PRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFA 153
           P P +  F+ L+ A S    +      + ++  M    I  N  T   L          +
Sbjct: 77  PLPSIADFSRLLSAISKMKKYD---VVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLS 133

Query: 154 QAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMT----HRDVVSWTVM 209
            A S    ++KLGH   I    SLL  +    R++     +FD+M       +VV +  +
Sbjct: 134 LALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYD-ALYMFDQMVGMGYKPNVVIYNTI 192

Query: 210 IMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGW 269
           I G   + + D+AL    +M+  G+ P+ VT  + ++    SG       +   + +   
Sbjct: 193 IDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREI 252

Query: 270 ELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEK----NVFTWNAVIKGLALAKSGEEAIR 325
             DV    ALID   K GRV E    +  +  +    ++ T++ +I GL +    +EA  
Sbjct: 253 YPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEE 312

Query: 326 LFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDL 385
           +F  M   G   D VT   +++    S  V+ G ++F  +   + G + N   Y  ++  
Sbjct: 313 MFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEM--SQRGVVRNTVTYTILIQG 370

Query: 386 LARSGSLREAFEVMRCMPF 404
             R+G L  A E+ R M F
Sbjct: 371 YCRAGKLNVAEEIFRRMVF 389



 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/288 (21%), Positives = 125/288 (43%), Gaps = 13/288 (4%)

Query: 121 LSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGV 180
           LS    M +    P+  TF  L            A  +   ++ +G+  ++ ++N+++  
Sbjct: 136 LSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDG 195

Query: 181 YAASPRL---FSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPN 237
              S ++     L  ++  +    DVV++  +I G  ++G++ DA      M    + P+
Sbjct: 196 LCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPD 255

Query: 238 RVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKC--GRVEEGVRV 295
             T    + AC   G V      ++ + R   + D+V  + LI  Y  C   R++E   +
Sbjct: 256 VFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLI--YGLCMYSRLDEAEEM 313

Query: 296 FSSVKEKNVF----TWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNH 351
           F  +  K  F    T++ +I G   +K  E  ++LF  M Q GV  + VT   ++     
Sbjct: 314 FGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCR 373

Query: 352 SGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVM 399
           +G +++  +IF  +V    G  PN+  Y  ++  L  +G + +A  ++
Sbjct: 374 AGKLNVAEEIFRRMVFC--GVHPNIITYNVLLHGLCDNGKIEKALVIL 419



 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 100/211 (47%), Gaps = 20/211 (9%)

Query: 218 KFDDALLAFEQMQYAGVAPNRVT---MVNALAACAD-SGAVE-MGAWIHDFIRRNGWELD 272
           K+D  +  +EQMQ  G+  N  T   ++N    C+  S A+  +G  I     + G E  
Sbjct: 96  KYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMI-----KLGHEPS 150

Query: 273 VVLGTALIDMYAKCGRVEEGVRVFSSV----KEKNVFTWNAVIKGLALAKSGEEAIRLFN 328
           +V   +L++ + +  RV + + +F  +     + NV  +N +I GL  +K  + A+ L N
Sbjct: 151 IVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLN 210

Query: 329 RMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLAR 388
           RME+DG+  D VT  +++S    SG      ++   +   K    P+V  +  ++D   +
Sbjct: 211 RMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMT--KREIYPDVFTFNALIDACVK 268

Query: 389 SGSLREA---FEVMRCMPFDPTKAMWGSLLV 416
            G + EA   +E M     DP    + SLL+
Sbjct: 269 EGRVSEAEEFYEEMIRRSLDPDIVTY-SLLI 298


>AT5G01110.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:42114-44303 REVERSE
           LENGTH=729
          Length = 729

 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/404 (22%), Positives = 168/404 (41%), Gaps = 31/404 (7%)

Query: 96  PHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQA 155
           P +  +N+LI A+S       +     +   M      P  YT+  +   L     + +A
Sbjct: 268 PDIVTYNTLISAYSSKGLMEEAF---ELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERA 324

Query: 156 QSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVS----WTVMIM 211
           + V A +L+ G   D   + SLL + A          ++F +M  RDVV     ++ M+ 
Sbjct: 325 KEVFAEMLRSGLSPDSTTYRSLL-MEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMS 383

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
            F  +G  D AL+ F  ++ AG+ P+ V     +      G + +   + + + + G  +
Sbjct: 384 LFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAM 443

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVF----TWNAVIKGLALAKSGEEAIRLF 327
           DVV    ++    K   + E  ++F+ + E+ +F    T   +I G     + + A+ LF
Sbjct: 444 DVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELF 503

Query: 328 NRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLA 387
            +M++  +R D VT   +L      G +D  ++I+  +V  +   +P    Y+ +V+ L 
Sbjct: 504 QKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKE--ILPTPISYSILVNALC 561

Query: 388 RSGSLREAFEV---MRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAY 444
             G L EAF V   M      PT  +  S++      G+    E    K++      S  
Sbjct: 562 SKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMI------SEG 615

Query: 445 YVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQG 488
           +V     Y  +        + G +++  ++K  G      EEQG
Sbjct: 616 FVPDCISYNTL--------IYGFVREENMSKAFGLVKKMEEEQG 651



 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/359 (21%), Positives = 155/359 (43%), Gaps = 24/359 (6%)

Query: 123 IFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYA 182
           ++  + R+ +  N YT   +  +L       +  +  + V + G   DI  +N+L+  Y 
Sbjct: 222 VYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAY- 280

Query: 183 ASPRLFSLCRQLFDEMTHR----DVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNR 238
           +S  L     +L + M  +     V ++  +I G    GK++ A   F +M  +G++P+ 
Sbjct: 281 SSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDS 340

Query: 239 VTMVNAL-AACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFS 297
            T  + L  AC     VE      D   R+    D+V  ++++ ++ + G +++ +  F+
Sbjct: 341 TTYRSLLMEACKKGDVVETEKVFSDMRSRDVVP-DLVCFSSMMSLFTRSGNLDKALMYFN 399

Query: 298 SVKEKNVFTWNAV----IKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSG 353
           SVKE  +   N +    I+G         A+ L N M Q G   D VT   +L       
Sbjct: 400 SVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRK 459

Query: 354 LVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTK---AM 410
           ++    ++F  + E      P+      ++D   + G+L+ A E+ + M     +     
Sbjct: 460 MLGEADKLFNEMTE--RALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVT 517

Query: 411 WGSLLVSSKSQGDLEFSEFVARKLV--ELEPANSAYYVHLSNL-----YAEMGR-WDDV 461
           + +LL      GD++ ++ +   +V  E+ P   +Y + ++ L      AE  R WD++
Sbjct: 518 YNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEM 576



 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/342 (19%), Positives = 144/342 (42%), Gaps = 19/342 (5%)

Query: 96  PHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQA 155
           P +  F+S++  F+ S +   +L     F  +    ++P++  +  L +        + A
Sbjct: 373 PDLVCFSSMMSLFTRSGNLDKALM---YFNSVKEAGLIPDNVIYTILIQGYCRKGMISVA 429

Query: 156 QSVHAHVLKLGHLHDIYVHNSLL-GVYAASPRLFSLCRQLFDEMTHR----DVVSWTVMI 210
            ++   +L+ G   D+  +N++L G+     ++     +LF+EMT R    D  + T++I
Sbjct: 430 MNLRNEMLQQGCAMDVVTYNTILHGL--CKRKMLGEADKLFNEMTERALFPDSYTLTILI 487

Query: 211 MGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWI-HDFIRRNGW 269
            G    G   +A+  F++M+   +  + VT    L      G ++    I  D + +   
Sbjct: 488 DGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEIL 547

Query: 270 ELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKN----VFTWNAVIKGLALAKSGEEAIR 325
              +   + L++     G + E  RV+  +  KN    V   N++IKG   + +  +   
Sbjct: 548 PTPISY-SILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGES 606

Query: 326 LFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDL 385
              +M  +G   D ++   ++        +     +   + E + G +P+V  Y  ++  
Sbjct: 607 FLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHG 666

Query: 386 LARSGSLREAFEVMRCM---PFDPTKAMWGSLLVSSKSQGDL 424
             R   ++EA  V+R M     +P ++ +  ++    SQ +L
Sbjct: 667 FCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNL 708



 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/251 (22%), Positives = 105/251 (41%), Gaps = 13/251 (5%)

Query: 206 WTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNAL-AACADSGAVEMGAWIHDFI 264
           + ++I  +  A K  +A  AF  ++  G   + +   NAL  +    G VE+   ++  I
Sbjct: 168 FDLLIRTYVQARKLREAHEAFTLLRSKGFTVS-IDACNALIGSLVRIGWVELAWGVYQEI 226

Query: 265 RRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVF----TWNAVIKGLALAKSG 320
            R+G  ++V     +++   K G++E+     S V+EK V+    T+N +I   +     
Sbjct: 227 SRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLM 286

Query: 321 EEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYA 380
           EEA  L N M   G      T   V++     G  +  +++F  ++  + G  P+   Y 
Sbjct: 287 EEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEML--RSGLSPDSTTYR 344

Query: 381 CMVDLLARSGSLREA---FEVMRCMPFDPTKAMWGSLLVSSKSQGDLE--FSEFVARKLV 435
            ++    + G + E    F  MR     P    + S++      G+L+     F + K  
Sbjct: 345 SLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEA 404

Query: 436 ELEPANSAYYV 446
            L P N  Y +
Sbjct: 405 GLIPDNVIYTI 415


>AT5G65560.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:26201012-26203759 REVERSE
           LENGTH=915
          Length = 915

 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 154/378 (40%), Gaps = 52/378 (13%)

Query: 96  PHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQA 155
           P V  +  LI++   S     +L   ++   M    I PN +T+  L  SL + C F +A
Sbjct: 321 PTVRTYTVLIKSLCGSERKSEAL---NLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKA 377

Query: 156 QSVHAHVLKLGHLHDIYVHNSLLGVYAA-------------------SPR-------LFS 189
           + +   +L+ G + ++  +N+L+  Y                     SP        +  
Sbjct: 378 RELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKG 437

Query: 190 LCRQ-------LFDEMTHR----DVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNR 238
            C+        + ++M  R    DVV++  +I G   +G FD A      M   G+ P++
Sbjct: 438 YCKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQ 497

Query: 239 VTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSS 298
            T  + + +   S  VE    + D + + G   +VV+ TALID Y K G+V+E   +   
Sbjct: 498 WTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEK 557

Query: 299 VKEKNV----FTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGL 354
           +  KN      T+NA+I GL      +EA  L  +M + G++    T   ++      G 
Sbjct: 558 MLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGD 617

Query: 355 VDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCM---PFDPTKAMW 411
            D     F  ++    G  P+   Y   +    R G L +A ++M  M      P    +
Sbjct: 618 FDHAYSRFQQMLSS--GTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTY 675

Query: 412 GSLLVSSKSQGDLEFSEF 429
            SL+   K  GDL  + F
Sbjct: 676 SSLI---KGYGDLGQTNF 690



 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 86/386 (22%), Positives = 151/386 (39%), Gaps = 74/386 (19%)

Query: 96  PHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQA 155
           P+   +N LI+ +  S+ H      + +   M    +LP+  T+  L        +F  A
Sbjct: 426 PNTRTYNELIKGYCKSNVHK----AMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSA 481

Query: 156 QSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHR----DVVSWTVMIM 211
             + + +   G + D + + S++     S R+   C  LFD +  +    +VV +T +I 
Sbjct: 482 YRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEAC-DLFDSLEQKGVNPNVVMYTALID 540

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNAL--AACADSGAVEM------------- 256
           G+  AGK D+A L  E+M      PN +T  NAL    CAD    E              
Sbjct: 541 GYCKAGKVDEAHLMLEKMLSKNCLPNSLTF-NALIHGLCADGKLKEATLLEEKMVKIGLQ 599

Query: 257 ----------------GAWIHDFIR-----RNGWELDVVLGTALIDMYAKCGRVEEGVRV 295
                           G + H + R      +G + D    T  I  Y + GR+ +   +
Sbjct: 600 PTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDM 659

Query: 296 FSSVKEKNV----FTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLS---- 347
            + ++E  V    FT++++IKG         A  +  RM   G    + T L+++     
Sbjct: 660 MAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLE 719

Query: 348 ------------ACNHSGLV--DMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLR 393
                        C  S ++  D   ++   +VE  +   PN K Y  ++  +   G+LR
Sbjct: 720 MKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVE--HSVTPNAKSYEKLILGICEVGNLR 777

Query: 394 EAFEV----MRCMPFDPTKAMWGSLL 415
            A +V     R     P++ ++ +LL
Sbjct: 778 VAEKVFDHMQRNEGISPSELVFNALL 803



 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 76/362 (20%), Positives = 147/362 (40%), Gaps = 56/362 (15%)

Query: 123 IFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKL---GHLHDIYVHNSLLG 179
           ++  M  + + PN YT+    K ++  C     +  + +V K+   G   D + + SL+ 
Sbjct: 205 VYMEMLEDKVCPNIYTYN---KMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIM 261

Query: 180 VYAASPRLFSLCRQLFDEM----THRDVVSWTVMIMGFRNAGKFDDALLAF--------- 226
            Y     L S  + +F+EM      R+ V++T +I G   A + D+A+  F         
Sbjct: 262 GYCQRKDLDSAFK-VFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECF 320

Query: 227 --------------------------EQMQYAGVAPNRVTMVNALAACADSGAVEMGAWI 260
                                     ++M+  G+ PN  T    + +       E    +
Sbjct: 321 PTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKAREL 380

Query: 261 HDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEK----NVFTWNAVIKGLAL 316
              +   G   +V+   ALI+ Y K G +E+ V V   ++ +    N  T+N +IKG   
Sbjct: 381 LGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYC- 439

Query: 317 AKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNV 376
             +  +A+ + N+M +  V  D VT  +++     SG  D   ++   +     G +P+ 
Sbjct: 440 KSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLM--NDRGLVPDQ 497

Query: 377 KHYACMVDLLARSGSLREA---FEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARK 433
             Y  M+D L +S  + EA   F+ +     +P   M+ +L+      G ++ +  +  K
Sbjct: 498 WTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEK 557

Query: 434 LV 435
           ++
Sbjct: 558 ML 559



 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 92/207 (44%), Gaps = 12/207 (5%)

Query: 279 LIDMYAKCGRVEEGVRVFSSVKEKNV----FTWNAVIKGLALAKSGEEAIRLFNRMEQDG 334
           +++ Y K G VEE  +  S + E  +    FT+ ++I G    K  + A ++FN M   G
Sbjct: 224 MVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKG 283

Query: 335 VRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLRE 394
            R +EV    ++     +  +D    +F  + + +    P V+ Y  ++  L  S    E
Sbjct: 284 CRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDE--CFPTVRTYTVLIKSLCGSERKSE 341

Query: 395 AFEVMRCMP---FDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVE--LEPANSAYYVHLS 449
           A  +++ M      P    +  L+ S  SQ   E +  +  +++E  L P N   Y  L 
Sbjct: 342 ALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMP-NVITYNALI 400

Query: 450 NLYAEMGRWDDVEKVRGMMKDRQLTKD 476
           N Y + G  +D   V  +M+ R+L+ +
Sbjct: 401 NGYCKRGMIEDAVDVVELMESRKLSPN 427


>AT1G62930.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:23306534-23308423 FORWARD
           LENGTH=629
          Length = 629

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 139/340 (40%), Gaps = 52/340 (15%)

Query: 95  RPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQ 154
           RP+V  +NSLIR   +     ++   LS    M    I PN  TF  L  +        +
Sbjct: 287 RPNVVTYNSLIRCLCNYGRWSDASRLLS---DMIERKINPNVVTFSALIDAFVKEGKLVE 343

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRD----VVSWTVMI 210
           A+ ++  ++K     DI+ ++SL+  +    RL    + +F+ M  +D    VV++  +I
Sbjct: 344 AEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL-DEAKHMFELMISKDCFPNVVTYNTLI 402

Query: 211 MGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWE 270
            GF  A + ++ +  F +M   G+  N VT    +     +G  +M   I   +  +G  
Sbjct: 403 KGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVP 462

Query: 271 LDVVLGTALIDMYAKCGRVEEGVRVF----SSVKEKNVFTWNAVIKGLALAKSGEEAIRL 326
            D++  + L+D   K G++E+ + VF     S  E +++T+N +I+G+  A   E+   L
Sbjct: 463 PDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDL 522

Query: 327 FNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLL 386
           F  +   GV+                                     PNV  Y  M+   
Sbjct: 523 FCSLSLKGVK-------------------------------------PNVIIYTTMISGF 545

Query: 387 ARSGSLREAFEVMRCMPFD---PTKAMWGSLLVSSKSQGD 423
            R G   EA  + R M  D   P    + +L+ +    GD
Sbjct: 546 CRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGD 585



 Score = 89.0 bits (219), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 87/393 (22%), Positives = 170/393 (43%), Gaps = 21/393 (5%)

Query: 95  RPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQ 154
           +P+   FN+LI        H+ +   +++   M      P+ +T+  +   L        
Sbjct: 182 QPNTVTFNTLIHGL---FLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDL 238

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHR----DVVSWTVMI 210
           A S+   + K     D+ ++ +++        +      LF EM ++    +VV++  +I
Sbjct: 239 ALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVND-ALNLFTEMDNKGIRPNVVTYNSLI 297

Query: 211 MGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWE 270
               N G++ DA      M    + PN VT    + A    G +     ++D + +   +
Sbjct: 298 RCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID 357

Query: 271 LDVVLGTALIDMYAKCGRVEEGVRVFSSVKEK----NVFTWNAVIKGLALAKSGEEAIRL 326
            D+   ++LI+ +    R++E   +F  +  K    NV T+N +IKG   AK  EE + L
Sbjct: 358 PDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMEL 417

Query: 327 FNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLL 386
           F  M Q G+  + VT   ++     +G  DM ++IF  +V    G  P++  Y+ ++D L
Sbjct: 418 FREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSD--GVPPDIITYSILLDGL 475

Query: 387 ARSGSLREA---FEVMRCMPFDPTKAMWGSLLVSSKSQGDLE--FSEFVARKLVELEPAN 441
            + G L +A   FE ++    +P    +  ++      G +E  +  F +  L  ++P N
Sbjct: 476 CKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKP-N 534

Query: 442 SAYYVHLSNLYAEMGRWDDVEKV-RGMMKDRQL 473
              Y  + + +   G  ++ + + R M +D  L
Sbjct: 535 VIIYTTMISGFCRKGLKEEADALFREMKEDGTL 567



 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 86/393 (21%), Positives = 160/393 (40%), Gaps = 25/393 (6%)

Query: 94  PRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFA 153
           P P +  FN L+ A +  +        +S+   M    I  + Y++  L           
Sbjct: 76  PLPSIVEFNKLLSAIAKMNKFD---LVISLGERMQNLRISYDLYSYNILINCFCRRSQLP 132

Query: 154 QAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRL---FSLCRQLFDEMTHRDVVSWTVMI 210
            A +V   ++KLG+  DI   +SLL  Y    R+    +L  Q+F      + V++  +I
Sbjct: 133 LALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLI 192

Query: 211 MGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWE 270
            G     K  +A+   ++M   G  P+  T    +      G +++   +   + +   E
Sbjct: 193 HGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIE 252

Query: 271 LDVVLGTALIDMYAKCGRVEEGVRVFSSVKEK----NVFTWNAVIKGLALAKSGEEAIRL 326
            DVV+ T +ID       V + + +F+ +  K    NV T+N++I+ L       +A RL
Sbjct: 253 ADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRL 312

Query: 327 FNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLL 386
            + M +  +  + VT  A++ A    G +    +++  ++  K    P++  Y+ +++  
Sbjct: 313 LSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI--KRSIDPDIFTYSSLINGF 370

Query: 387 ARSGSLREA---FEVMRCMPFDPTKAMWGSLL-----VSSKSQGDLEFSEFVARKLVELE 438
                L EA   FE+M      P    + +L+          +G   F E   R LV   
Sbjct: 371 CMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLV--- 427

Query: 439 PANSAYYVHLSNLYAEMGRWDDVEKV-RGMMKD 470
             N+  Y  L     + G  D  +K+ + M+ D
Sbjct: 428 -GNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSD 459



 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 67/308 (21%), Positives = 136/308 (44%), Gaps = 18/308 (5%)

Query: 121 LSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGV 180
           + +F  M ++  LP+   F  L  +++    F    S+   +  L   +D+Y +N L+  
Sbjct: 65  VDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINC 124

Query: 181 Y---AASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPN 237
           +   +  P   ++  ++       D+V+ + ++ G+ +  +  +A+   +QM      PN
Sbjct: 125 FCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPN 184

Query: 238 RVTMVNAL--AACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRV 295
            VT  N L       + A E  A I   + R G + D+     +++   K G ++  + +
Sbjct: 185 TVTF-NTLIHGLFLHNKASEAVALIDRMVAR-GCQPDLFTYGTVVNGLCKRGDIDLALSL 242

Query: 296 FSSVK----EKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSA-CN 350
              ++    E +V  +  +I  L   K+  +A+ LF  M+  G+R + VT  +++   CN
Sbjct: 243 LKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCN 302

Query: 351 HSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREA---FEVMRCMPFDPT 407
           +    D  R +   ++E K    PNV  ++ ++D   + G L EA   ++ M     DP 
Sbjct: 303 YGRWSDASR-LLSDMIERKIN--PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 359

Query: 408 KAMWGSLL 415
              + SL+
Sbjct: 360 IFTYSSLI 367


>AT1G63400.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23507320-23509053 FORWARD
           LENGTH=577
          Length = 577

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 119/254 (46%), Gaps = 12/254 (4%)

Query: 96  PHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQA 155
           P+V  FN+LI AF         +    ++  M + +I P+ +T+  L           +A
Sbjct: 328 PNVVTFNALIDAFVK---EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 384

Query: 156 QSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHR----DVVSWTVMIM 211
           + +   ++      ++  +N+L+  +  + R+     +LF EM+ R    + V++T +I 
Sbjct: 385 KHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGV-ELFREMSQRGLVGNTVTYTTLIH 443

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
           GF  A   D+A + F+QM   GV PN +T    L     +G +E    + ++++R+  E 
Sbjct: 444 GFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEP 503

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEK----NVFTWNAVIKGLALAKSGEEAIRLF 327
            +     +I+   K G+VE+G  +F S+  K    +V  +N +I G       EEA  LF
Sbjct: 504 TIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALF 563

Query: 328 NRMEQDGVRADEVT 341
            +M +DG   D  T
Sbjct: 564 RKMREDGPLPDSGT 577



 Score = 82.4 bits (202), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 123/276 (44%), Gaps = 12/276 (4%)

Query: 95  RPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQ 154
           RP+V  ++SLI    +     ++   LS    M    I PN  TF  L  +        +
Sbjct: 292 RPNVITYSSLISCLCNYERWSDASRLLS---DMIERKINPNVVTFNALIDAFVKEGKLVE 348

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRD----VVSWTVMI 210
           A+ ++  ++K     DI+ ++SL+  +    RL    + +F+ M  +D    VV++  +I
Sbjct: 349 AEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL-DEAKHMFELMISKDCFPNVVTYNTLI 407

Query: 211 MGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWE 270
            GF  A + D+ +  F +M   G+  N VT    +     +   +    +   +  +G  
Sbjct: 408 NGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVH 467

Query: 271 LDVVLGTALIDMYAKCGRVEEGVRVFSSVK----EKNVFTWNAVIKGLALAKSGEEAIRL 326
            +++    L+D   K G++E+ + VF  ++    E  ++T+N +I+G+  A   E+   L
Sbjct: 468 PNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDL 527

Query: 327 FNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIF 362
           F  +   GV+ D +    ++S     GL +    +F
Sbjct: 528 FCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALF 563



 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/328 (22%), Positives = 150/328 (45%), Gaps = 21/328 (6%)

Query: 101 FNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHA 160
           +  ++R   HS    +++    +F  M ++  LP+ + F  L  +++    F    S+  
Sbjct: 53  YREILRNGLHSMKLDDAI---GLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGE 109

Query: 161 HVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMT----HRDVVSWTVMIMGFRNA 216
            + +LG  H++Y +N L+  +    ++ SL   L  +M        +V+ + ++ G+ + 
Sbjct: 110 KMQRLGISHNLYTYNILINCFCRRSQI-SLALALLGKMMKLGYEPSIVTLSSLLNGYCHG 168

Query: 217 GKFDDALLAFEQMQYAGVAPNRVTMVNALAAC-ADSGAVEMGAWIHDFIRRNGWELDVVL 275
            +  DA+   +QM   G  P+ +T    +      + A E  A +   ++R G + ++V 
Sbjct: 169 KRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQR-GCQPNLVT 227

Query: 276 GTALIDMYAKCGRVEEGVRVFSSVK----EKNVFTWNAVIKGLALAKSGEEAIRLFNRME 331
              +++   K G ++    + + ++    E NV  ++ VI  L   +  ++A+ LF  ME
Sbjct: 228 YGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEME 287

Query: 332 QDGVRADEVTLLAVLSA-CNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSG 390
             GVR + +T  +++S  CN+    D  R +   ++E K    PNV  +  ++D   + G
Sbjct: 288 NKGVRPNVITYSSLISCLCNYERWSDASR-LLSDMIERKIN--PNVVTFNALIDAFVKEG 344

Query: 391 SLREA---FEVMRCMPFDPTKAMWGSLL 415
            L EA   ++ M     DP    + SL+
Sbjct: 345 KLVEAEKLYDEMIKRSIDPDIFTYSSLI 372



 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 112/273 (41%), Gaps = 20/273 (7%)

Query: 218 KFDDALLAFEQMQYAGVAPNRVTMVNALAAC-ADSGAVEMGAWIHDFIRRNGWELDVVLG 276
           KFD  +   E+MQ  G++ N  T  N L  C      + +   +   + + G+E  +V  
Sbjct: 100 KFDLVISLGEKMQRLGISHNLYT-YNILINCFCRRSQISLALALLGKMMKLGYEPSIVTL 158

Query: 277 TALIDMYAKCGRVEEGVRVFSSVKE----KNVFTWNAVIKGLALAKSGEEAIRLFNRMEQ 332
           ++L++ Y    R+ + V +   + E     +  T+  +I GL L     EA+ L +RM Q
Sbjct: 159 SSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQ 218

Query: 333 DGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSL 392
            G + + VT   V++     G +D+   +   +   K     NV  Y+ ++D L +    
Sbjct: 219 RGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAK--IEANVVIYSTVIDSLCKYRHE 276

Query: 393 REA---FEVMRCMPFDPTKAMWGSLL-----VSSKSQGDLEFSEFVARKLVELEPANSAY 444
            +A   F  M      P    + SL+         S      S+ + RK+      N   
Sbjct: 277 DDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKI----NPNVVT 332

Query: 445 YVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDL 477
           +  L + + + G+  + EK+   M  R +  D+
Sbjct: 333 FNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 365


>AT5G02860.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:654102-656561 FORWARD
           LENGTH=819
          Length = 819

 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/323 (22%), Positives = 134/323 (41%), Gaps = 19/323 (5%)

Query: 95  RPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQ 154
           +P +  +N ++  F       N +T  S+   M  + I P+ YT+  L           +
Sbjct: 240 KPTLITYNVILNVFGKMGTPWNKIT--SLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQE 297

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMT----HRDVVSWTVMI 210
           A  V   +   G  +D   +N+LL VY  S R     + L +EM        +V++  +I
Sbjct: 298 AAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVL-NEMVLNGFSPSIVTYNSLI 356

Query: 211 MGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWE 270
             +   G  D+A+    QM   G  P+  T    L+    +G VE    I + +R  G +
Sbjct: 357 SAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCK 416

Query: 271 LDVVLGTALIDMYAKCGRVEEGVRVFSSVK----EKNVFTWNAVIKGLALAKSGEEAIRL 326
            ++    A I MY   G+  E +++F  +       ++ TWN ++          E   +
Sbjct: 417 PNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGV 476

Query: 327 FNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLL 386
           F  M++ G   +  T   ++SA +  G  +    ++  +++   G  P++  Y  ++  L
Sbjct: 477 FKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDA--GVTPDLSTYNTVLAAL 534

Query: 387 ARSGSLREAFEVM------RCMP 403
           AR G   ++ +V+      RC P
Sbjct: 535 ARGGMWEQSEKVLAEMEDGRCKP 557



 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/429 (19%), Positives = 174/429 (40%), Gaps = 63/429 (14%)

Query: 101 FNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHA 160
           +N+L+  +  SH    ++    +   M  N   P+  T+  L  + +      +A  +  
Sbjct: 317 YNALLDVYGKSHRPKEAM---KVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKN 373

Query: 161 HVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHR----DVVSWTVMIMGFRNA 216
            + + G   D++ + +LL  +  + ++ S    +F+EM +     ++ ++   I  + N 
Sbjct: 374 QMAEKGTKPDVFTYTTLLSGFERAGKVES-AMSIFEEMRNAGCKPNICTFNAFIKMYGNR 432

Query: 217 GKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLG 276
           GKF + +  F+++   G++P+ VT    LA    +G     + +   ++R G+  +    
Sbjct: 433 GKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETF 492

Query: 277 TALIDMYAKCGRVEEGVRVFSSVKEKNVF----TWNAVIKGLALAKSGEEAIRLFNRMEQ 332
             LI  Y++CG  E+ + V+  + +  V     T+N V+  LA     E++ ++   ME 
Sbjct: 493 NTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMED 552

Query: 333 DGVRADEVTLLAVLSA-----------------------------------CNHSGLVDM 357
              + +E+T  ++L A                                   C+   L+  
Sbjct: 553 GRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPE 612

Query: 358 GRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREA---FEVMRCMPFDPTKAMWGSL 414
             + F  L E   GF P++     MV +  R   + +A    + M+   F P+ A + SL
Sbjct: 613 AERAFSELKE--RGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSL 670

Query: 415 LVSSKSQGDLEFSEFVARKLVE--LEPA----NSAYYVHLSNLYAEMGRWDDVEKVRGMM 468
           +       D   SE + R+++   ++P     N+  Y +  N      R  D  ++   M
Sbjct: 671 MYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNT-----RMRDASRIFSEM 725

Query: 469 KDRQLTKDL 477
           ++  +  D+
Sbjct: 726 RNSGIVPDV 734



 Score = 79.3 bits (194), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 75/321 (23%), Positives = 130/321 (40%), Gaps = 48/321 (14%)

Query: 202 DVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAP-------------------NRVTMV 242
           DV S+T +I  F N+G++ +A+  F++M+  G  P                   N++T +
Sbjct: 207 DVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSL 266

Query: 243 ----------------NALAACADSGAV-EMGAWIHDFIRRNGWELDVVLGTALIDMYAK 285
                           N L  C   G++ +  A + + ++  G+  D V   AL+D+Y K
Sbjct: 267 VEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGK 326

Query: 286 CGRVEEGVRVFSSVK----EKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVT 341
             R +E ++V + +       ++ T+N++I   A     +EA+ L N+M + G + D  T
Sbjct: 327 SHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFT 386

Query: 342 LLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREA---FEV 398
              +LS    +G V+    IF  +     G  PN+  +   + +    G   E    F+ 
Sbjct: 387 YTTLLSGFERAGKVESAMSIFEEMRNA--GCKPNICTFNAFIKMYGNRGKFTEMMKIFDE 444

Query: 399 MRCMPFDPTKAMWGSLLVSSKSQG-DLEFSE-FVARKLVELEPANSAYYVHLSNLYAEMG 456
           +      P    W +LL      G D E S  F   K     P    +   +S  Y+  G
Sbjct: 445 INVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLIS-AYSRCG 503

Query: 457 RWDDVEKVRGMMKDRQLTKDL 477
            ++    V   M D  +T DL
Sbjct: 504 SFEQAMTVYRRMLDAGVTPDL 524



 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 94/403 (23%), Positives = 155/403 (38%), Gaps = 67/403 (16%)

Query: 112 HHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDI 171
           H + NS  P+S     +RN         P L K  S      Q Q     VL+       
Sbjct: 56  HQNPNSRQPISSQTSRNRNRTRIGKSRDPNLGKPWSYHGLSPQGQ----QVLR------- 104

Query: 172 YVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAG---KFDDALLAFE- 227
               SL+     S +L S+  +LF+    +   + + ++   +  G   KFD AL AF+ 
Sbjct: 105 ----SLIEPNFDSGQLDSVLSELFEPFKDKPESTSSELLAFLKGLGFHKKFDLALRAFDW 160

Query: 228 ---QMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYA 284
              Q  Y  +  N V  +  ++     G V   A + + ++ +G+ LDV   T+LI  +A
Sbjct: 161 FMKQKDYQSMLDNSVVAI-IISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFA 219

Query: 285 KCGRVEEGVRVFSSVKEK----NVFTWNAVIKGLA-LAKSGEEAIRLFNRMEQDGVRADE 339
             GR  E V VF  ++E      + T+N ++     +     +   L  +M+ DG+  D 
Sbjct: 220 NSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDA 279

Query: 340 VTLLAVLSACNHSGLVDMGRQIF------GFL-----------VEGKY------------ 370
            T   +++ C    L     Q+F      GF            V GK             
Sbjct: 280 YTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNE 339

Query: 371 ----GFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKA---MWGSLLVSSKSQGD 423
               GF P++  Y  ++   AR G L EA E+   M    TK     + +LL   +  G 
Sbjct: 340 MVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGK 399

Query: 424 LE--FSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKV 464
           +E   S F   +    +P N   +     +Y   G++ ++ K+
Sbjct: 400 VESAMSIFEEMRNAGCKP-NICTFNAFIKMYGNRGKFTEMMKI 441


>AT1G62910.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23299060-23300958 FORWARD
           LENGTH=632
          Length = 632

 Score = 92.8 bits (229), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 123/282 (43%), Gaps = 45/282 (15%)

Query: 95  RPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQ 154
           RP VF ++SLI    +     ++   LS    M    I PN  TF  L  +        +
Sbjct: 290 RPDVFTYSSLISCLCNYGRWSDASRLLS---DMIERKINPNVVTFSALIDAFVKEGKLVE 346

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRL------FSL------------------ 190
           A+ ++  ++K     DI+ ++SL+  +    RL      F L                  
Sbjct: 347 AEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIK 406

Query: 191 --CR--------QLFDEMTHR----DVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAP 236
             C+        +LF EM+ R    + V++T +I GF  A   D+A + F+QM   GV P
Sbjct: 407 GFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHP 466

Query: 237 NRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVF 296
           N +T    L     +G +     + ++++R+  E D+     +I+   K G+VE+G  +F
Sbjct: 467 NILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELF 526

Query: 297 SSVKEK----NVFTWNAVIKGLALAKSGEEAIRLFNRMEQDG 334
            ++  K    NV  +N +I G     S EEA  L  +M++DG
Sbjct: 527 CNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDG 568



 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 83/373 (22%), Positives = 156/373 (41%), Gaps = 17/373 (4%)

Query: 98  VFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQS 157
           V I+N++I       H  ++L   ++F  M    I P+ +T+  L   L     ++ A  
Sbjct: 258 VVIYNTIIDGLCKYKHMDDAL---NLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASR 314

Query: 158 VHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHR----DVVSWTVMIMGF 213
           + + +++     ++   ++L+  +    +L     +L+DEM  R    D+ +++ +I GF
Sbjct: 315 LLSDMIERKINPNVVTFSALIDAFVKEGKLVE-AEKLYDEMIKRSIDPDIFTYSSLINGF 373

Query: 214 RNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDV 273
               + D+A   FE M      PN VT    +     +  VE G  +   + + G   + 
Sbjct: 374 CMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNT 433

Query: 274 VLGTALIDMYAKCGRVEEGVRVFSSVKE----KNVFTWNAVIKGLALAKSGEEAIRLFNR 329
           V  T LI  + +    +    VF  +       N+ T+N ++ GL       +A+ +F  
Sbjct: 434 VTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEY 493

Query: 330 MEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARS 389
           +++  +  D  T   ++     +G V+ G ++F  L     G  PNV  Y  M+    R 
Sbjct: 494 LQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNL--SLKGVSPNVIAYNTMISGFCRK 551

Query: 390 GSLREAFEVMRCMPFD---PTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYV 446
           GS  EA  +++ M  D   P    + +L+ +    GD E S  + +++     A  A  +
Sbjct: 552 GSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTI 611

Query: 447 HLSNLYAEMGRWD 459
            L       GR D
Sbjct: 612 GLVTNMLHDGRLD 624



 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/370 (22%), Positives = 154/370 (41%), Gaps = 24/370 (6%)

Query: 94  PRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFA 153
           P P +  FN L+ A +  +        +S+   M    I  + YT+             +
Sbjct: 79  PFPSIVEFNKLLSAVAKMNKFE---LVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLS 135

Query: 154 QAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRL---FSLCRQLFDEMTHRDVVSWTVMI 210
            A +V A ++KLG+  DI   +SLL  Y  S R+    +L  Q+ +     D  ++T +I
Sbjct: 136 LALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLI 195

Query: 211 MGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWE 270
            G     K  +A+   +QM   G  P+ VT    +      G +++   +   + +   E
Sbjct: 196 HGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIE 255

Query: 271 LDVVLGTALIDMYAKCGRVEEGVRVFSSVKEK----NVFTWNAVIKGLALAKSGEEAIRL 326
            DVV+   +ID   K   +++ + +F+ +  K    +VFT++++I  L       +A RL
Sbjct: 256 ADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRL 315

Query: 327 FNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLL 386
            + M +  +  + VT  A++ A    G +    +++  ++  K    P++  Y+ +++  
Sbjct: 316 LSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI--KRSIDPDIFTYSSLINGF 373

Query: 387 ARSGSLREA---FEVMRCMPFDPTKAMWGSLL-----VSSKSQGDLEFSEFVARKLVELE 438
                L EA   FE+M      P    + +L+          +G   F E   R LV   
Sbjct: 374 CMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLV--- 430

Query: 439 PANSAYYVHL 448
             N+  Y  L
Sbjct: 431 -GNTVTYTTL 439


>AT5G21222.1 | Symbols:  | protein kinase family protein |
           chr5:7209422-7213700 FORWARD LENGTH=831
          Length = 831

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/393 (21%), Positives = 173/393 (44%), Gaps = 30/393 (7%)

Query: 95  RPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQ 154
           +P +  + +L+ A +   H H   + LS+ + + +N + P+   F  +  + S   +  Q
Sbjct: 351 KPSLITYTTLVTALTRQKHFH---SLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQ 407

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCR----QLFDEMTHRDVVSWTVMI 210
           A  +   + + G        N+L+  Y    +L    R     L DEM   +  +  +++
Sbjct: 408 AMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILV 467

Query: 211 MGFRNAGKFDDALLAFEQMQYAGVAPNRVT---MVNALAACADSGAVE---MGAWIHDFI 264
             + N  K ++A     +MQ  GV P+ VT   +  A A    +   E   +   +H+ +
Sbjct: 468 QAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKV 527

Query: 265 RRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKE----KNVFTWNAVIKGLALAKSG 320
           + N     V     +++ Y + G++EE +R F  +KE     N+F +N++IKG       
Sbjct: 528 KPN-----VRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDM 582

Query: 321 EEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYA 380
           +    + + ME+ GV+ D VT   +++A +  G +    +I+  ++EG  G  P++  ++
Sbjct: 583 DGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEG--GIDPDIHAFS 640

Query: 381 CMVDLLARSGSLREAFEV---MRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKL--- 434
            +    AR+G   +A ++   MR     P   ++  ++    S G+++ +  V +K+   
Sbjct: 641 ILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGI 700

Query: 435 VELEPANSAYYVHLSNLYAEMGRWDDVEKVRGM 467
           V L P  + Y   +         W   E ++ M
Sbjct: 701 VGLSPNLTTYETLIWGFGEAKQPWKAEELLKDM 733



 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/236 (20%), Positives = 98/236 (41%), Gaps = 11/236 (4%)

Query: 189 SLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAAC 248
           S+   L +E     ++++T ++        F   L    +++  G+ P+ +     + A 
Sbjct: 340 SIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINAS 399

Query: 249 ADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVF-----SSVKEKN 303
           ++SG ++    I + ++ +G +        LI  Y K G++EE  R+        + + N
Sbjct: 400 SESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPN 459

Query: 304 VFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQ-IF 362
             T N +++     +  EEA  +  +M+  GV+ D VT   +  A    G        I 
Sbjct: 460 DRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMII 519

Query: 363 GFLVEGKYGFIPNVKHYACMVDLLARSGSLREA---FEVMRCMPFDPTKAMWGSLL 415
             ++  K    PNV+    +V+     G + EA   F  M+ +   P   ++ SL+
Sbjct: 520 PRMLHNKVK--PNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLI 573


>AT3G18110.1 | Symbols: EMB1270 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:6204940-6209691 REVERSE
           LENGTH=1440
          Length = 1440

 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 147/315 (46%), Gaps = 21/315 (6%)

Query: 171 IYVHNSLLGVYAASPRLFSLCRQLFDEMTHR----DVVSWTVMIMGFRNAGKFDDALLA- 225
           + V+N+++GVY+ S + FS  ++L D M  R    D++S+  +I     +G     L   
Sbjct: 225 VQVYNAMMGVYSRSGK-FSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVE 283

Query: 226 -FEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYA 284
             + ++ +G+ P+ +T    L+AC+    ++    + + +  +  + D+    A+I +Y 
Sbjct: 284 LLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYG 343

Query: 285 KCGRVEEGVRVFSSVKEKNVF----TWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEV 340
           +CG   E  R+F  ++ K  F    T+N+++   A  ++ E+   ++ +M++ G   DE+
Sbjct: 344 RCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEM 403

Query: 341 TLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMR 400
           T   ++      G +D+  Q++  + +G  G  P+   Y  ++D L ++    EA  +M 
Sbjct: 404 TYNTIIHMYGKQGQLDLALQLYKDM-KGLSGRNPDAITYTVLIDSLGKANRTVEAAALMS 462

Query: 401 CM---PFDPTKAMWGSLLVSSKSQGDLEFSE--FVARKLVELEPANSAYYVHLSNLYAEM 455
            M      PT   + +L+      G  E +E  F        +P N AY V L  L    
Sbjct: 463 EMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLL--- 519

Query: 456 GRWDDVEKVRGMMKD 470
            R ++  K  G+ +D
Sbjct: 520 -RGNETRKAWGLYRD 533



 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/344 (20%), Positives = 155/344 (45%), Gaps = 35/344 (10%)

Query: 152  FAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRD-----VVSW 206
            + +A+SV  ++ + G   D+   NSL+  YA     +   R +F+ M  RD     V S 
Sbjct: 768  WQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCG-CYERARAIFNTMM-RDGPSPTVESI 825

Query: 207  TVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRR 266
             +++      G+ ++  +  E++Q  G   ++ +++  L A A +G +     I+  ++ 
Sbjct: 826  NILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKA 885

Query: 267  NGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKN----VFTWNAVIKGLALAKSGEE 322
             G+   + L   +I++  K  RV +   + S ++E N    +  WN+++K     +  ++
Sbjct: 886  AGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKK 945

Query: 323  AIRLFNRMEQDGVRADEVTL-LAVLSACNHSGLVDMGRQIFGFLVEGK---YGFIPNVKH 378
             ++++ R+++ G+  DE T    ++  C         R   G+L+  +    G  P +  
Sbjct: 946  TVQVYQRIKETGLEPDETTYNTLIIMYCRDR------RPEEGYLLMQQMRNLGLDPKLDT 999

Query: 379  YACMVDLLARSGSLREA---FEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLV 435
            Y  ++    +   L +A   FE +        ++ + +++  S+  G    S+  A KL+
Sbjct: 1000 YKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSG----SDSKAEKLL 1055

Query: 436  EL------EPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQL 473
            ++      EP  +  ++ + + Y+  G   + EKV   +KD ++
Sbjct: 1056 QMMKNAGIEPTLATMHLLMVS-YSSSGNPQEAEKVLSNLKDTEV 1098


>AT2G02150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:550340-552625 REVERSE
           LENGTH=761
          Length = 761

 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/349 (22%), Positives = 153/349 (43%), Gaps = 17/349 (4%)

Query: 121 LSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGV 180
           +  F+ M R  + P   +   L    +        +     ++  G    ++ +N ++  
Sbjct: 212 IQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDC 271

Query: 181 YAASPRLFSLCRQLFDEMTHR----DVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAP 236
                 +    R LF+EM  R    D V++  MI GF   G+ DD +  FE+M+     P
Sbjct: 272 MCKEGDV-EAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEP 330

Query: 237 NRVTMVNALAAC-ADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRV 295
           + +T  NAL  C    G + +G   +  ++ NG + +VV  + L+D + K G +++ ++ 
Sbjct: 331 DVIT-YNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKF 389

Query: 296 FSSVKE----KNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNH 351
           +  ++      N +T+ ++I       +  +A RL N M Q GV  + VT  A++     
Sbjct: 390 YVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCD 449

Query: 352 SGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMP---FDPTK 408
           +  +    ++FG +     G IPN+  Y  ++    ++ ++  A E++  +      P  
Sbjct: 450 AERMKEAEELFGKM--DTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDL 507

Query: 409 AMWGSLLVSSKSQGDLEFSEFVARKLVELE-PANSAYYVHLSNLYAEMG 456
            ++G+ +    S   +E ++ V  ++ E    ANS  Y  L + Y + G
Sbjct: 508 LLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSG 556



 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 74/346 (21%), Positives = 138/346 (39%), Gaps = 50/346 (14%)

Query: 95  RPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQ 154
            P V  +N+LI  F            L  +  M  N + PN  ++  L  +        Q
Sbjct: 329 EPDVITYNALINCFCKFGKLP---IGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQ 385

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRL---FSLCRQLFDEMTHRDVVSWTVMIM 211
           A   +  + ++G + + Y + SL+        L   F L  ++       +VV++T +I 
Sbjct: 386 AIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALID 445

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVT-------------------MVNALAA----- 247
           G  +A +  +A   F +M  AGV PN  +                   ++N L       
Sbjct: 446 GLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKP 505

Query: 248 ------------CADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRV 295
                       C+    +E    + + ++  G + + ++ T L+D Y K G   EG+ +
Sbjct: 506 DLLLYGTFIWGLCSLE-KIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHL 564

Query: 296 FSSVKEKN----VFTWNAVIKGLALAKSGEEAIRLFNRMEQD-GVRADEVTLLAVLSACN 350
              +KE +    V T+  +I GL   K   +A+  FNR+  D G++A+     A++    
Sbjct: 565 LDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLC 624

Query: 351 HSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAF 396
               V+    +F  +V+   G +P+   Y  ++D   + G++ EA 
Sbjct: 625 KDNQVEAATTLFEQMVQK--GLVPDRTAYTSLMDGNFKQGNVLEAL 668


>AT5G41170.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr5:16478860-16480443 REVERSE
           LENGTH=527
          Length = 527

 Score = 89.4 bits (220), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 134/316 (42%), Gaps = 14/316 (4%)

Query: 96  PHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQA 155
           P +  F SLI  F   +    ++   S+   M    I P+   +  +  SL    H   A
Sbjct: 140 PDIVTFTSLINGFCLGNRMEEAM---SMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYA 196

Query: 156 QSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLF---SLCRQLFDEMTHRDVVSWTVMIMG 212
            S+   +   G   D+ ++ SL+     S R     SL R +       DV+++  +I  
Sbjct: 197 LSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDA 256

Query: 213 FRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELD 272
           F   GKF DA   + +M    +APN  T  + +      G V+    +   +   G   D
Sbjct: 257 FVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPD 316

Query: 273 VVLGTALIDMYAKCGRVEEGVRVFSSVKEK----NVFTWNAVIKGLALAKSGEEAIRLFN 328
           VV  T+LI+ + KC +V++ +++F  + +K    N  T+  +I+G         A  +F+
Sbjct: 317 VVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFS 376

Query: 329 RMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKY-GFIPNVKHYACMVDLLA 387
            M   GV  +  T   +L    ++G V     IF  + + +  G  PN+  Y  ++  L 
Sbjct: 377 HMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLC 436

Query: 388 RSGSLREA---FEVMR 400
            +G L +A   FE MR
Sbjct: 437 YNGKLEKALMVFEDMR 452



 Score = 85.5 bits (210), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 141/307 (45%), Gaps = 16/307 (5%)

Query: 101 FNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHA 160
           +  ++R   HS   + +L    +F HM  +  LP+   F  L   ++    F    ++  
Sbjct: 40  YREILRNGLHSLQFNEAL---DLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCD 96

Query: 161 HVLKLGHLHDIYVHNSLLGVYAASPRLF---SLCRQLFDEMTHRDVVSWTVMIMGFRNAG 217
           H+  +G  HD+Y  N L+  +  S + +   S   ++       D+V++T +I GF    
Sbjct: 97  HLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGN 156

Query: 218 KFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGT 277
           + ++A+    QM   G+ P+ V     + +   +G V     + D +   G   DVV+ T
Sbjct: 157 RMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYT 216

Query: 278 ALIDMYAKCGRVEEGVRVFSSVKEK----NVFTWNAVIKGLALAKSGE--EAIRLFNRME 331
           +L++     GR  +   +   + ++    +V T+NA+I   A  K G+  +A  L+N M 
Sbjct: 217 SLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALID--AFVKEGKFLDAEELYNEMI 274

Query: 332 QDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGS 391
           +  +  +  T  ++++     G VD  RQ+F +L+E K G  P+V  Y  +++   +   
Sbjct: 275 RMSIAPNIFTYTSLINGFCMEGCVDEARQMF-YLMETK-GCFPDVVAYTSLINGFCKCKK 332

Query: 392 LREAFEV 398
           + +A ++
Sbjct: 333 VDDAMKI 339



 Score = 82.0 bits (201), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 72/322 (22%), Positives = 136/322 (42%), Gaps = 17/322 (5%)

Query: 95  RPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQ 154
           RP V ++ SL+    +S    ++    S+   M +  I P+  TF  L  +      F  
Sbjct: 209 RPDVVMYTSLVNGLCNSGRWRDAD---SLLRGMTKRKIKPDVITFNALIDAFVKEGKFLD 265

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHR----DVVSWTVMI 210
           A+ ++  ++++    +I+ + SL+  +          RQ+F  M  +    DVV++T +I
Sbjct: 266 AEELYNEMIRMSIAPNIFTYTSLINGFCMEG-CVDEARQMFYLMETKGCFPDVVAYTSLI 324

Query: 211 MGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWE 270
            GF    K DDA+  F +M   G+  N +T    +      G   +   +   +   G  
Sbjct: 325 NGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVP 384

Query: 271 LDVVLGTALIDMYAKCGRVEEGVRVFSSVKEK-------NVFTWNAVIKGLALAKSGEEA 323
            ++     L+      G+V++ + +F  ++++       N++T+N ++ GL      E+A
Sbjct: 385 PNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKA 444

Query: 324 IRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMV 383
           + +F  M +  +    +T   ++     +G V     +F  L     G  PNV  Y  M+
Sbjct: 445 LMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSK--GVKPNVVTYTTMI 502

Query: 384 DLLARSGSLREAFEVMRCMPFD 405
             L R G   EA  + R M  D
Sbjct: 503 SGLFREGLKHEAHVLFRKMKED 524



 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 86/181 (47%), Gaps = 6/181 (3%)

Query: 301 EKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQ 360
           E ++ T+ ++I G  L    EEA+ + N+M + G++ D V    ++ +   +G V+    
Sbjct: 139 EPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALS 198

Query: 361 IFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCM---PFDPTKAMWGSLLVS 417
           +F  +    YG  P+V  Y  +V+ L  SG  R+A  ++R M      P    + +L+ +
Sbjct: 199 LFDQM--ENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDA 256

Query: 418 SKSQGDLEFSEFVARKLVELEPANSAY-YVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKD 476
              +G    +E +  +++ +  A + + Y  L N +   G  D+  ++  +M+ +    D
Sbjct: 257 FVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPD 316

Query: 477 L 477
           +
Sbjct: 317 V 317


>AT1G63150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:23419399-23421288 FORWARD
           LENGTH=629
          Length = 629

 Score = 88.6 bits (218), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 143/310 (46%), Gaps = 20/310 (6%)

Query: 96  PHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQA 155
           P+V  FN+LI AF         +    +   M + +I P+  T+  L           +A
Sbjct: 326 PNVVTFNALIDAF---FKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEA 382

Query: 156 QSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHR----DVVSWTVMIM 211
           + +   ++    L +I  +N+L+  +    R+     +LF EM+ R    + V++T +I 
Sbjct: 383 KQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGV-ELFREMSQRGLVGNTVTYTTIIQ 441

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
           GF  AG  D A + F+QM    V  + +T    L      G ++    I  +++++  EL
Sbjct: 442 GFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMEL 501

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEK-NVFTWNAVIKGLALAKSGEEAIRLFNRM 330
           ++ +   +I+   K G+V E   +F S+  K +V T+N +I GL   +  +EA  LF +M
Sbjct: 502 NIFIYNTMIEGMCKAGKVGEAWDLFCSLSIKPDVVTYNTMISGLCSKRLLQEADDLFRKM 561

Query: 331 EQDGVRADEVT----LLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLL 386
           ++DG   +  T    + A L  C+ +   ++ +++         GF+ +    + + ++L
Sbjct: 562 KEDGTLPNSGTYNTLIRANLRDCDRAASAELIKEM------RSSGFVGDASTISLVTNML 615

Query: 387 ARSGSLREAF 396
              G L ++F
Sbjct: 616 -HDGRLDKSF 624



 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/346 (20%), Positives = 144/346 (41%), Gaps = 41/346 (11%)

Query: 95  RPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQ 154
           + +V IFN++I +     H       + +F  M    I PN  T+  L   L   C++  
Sbjct: 255 KANVVIFNTIIDSLCKYRHVE---VAVDLFTEMETKGIRPNVVTYNSLINCL---CNY-- 306

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFR 214
                                   G ++ + RL S    + ++  + +VV++  +I  F 
Sbjct: 307 ------------------------GRWSDASRLLS---NMLEKKINPNVVTFNALIDAFF 339

Query: 215 NAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVV 274
             GK  +A    E+M    + P+ +T    +        ++    +  F+       ++ 
Sbjct: 340 KEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQ 399

Query: 275 LGTALIDMYAKCGRVEEGVRVFSSVKEK----NVFTWNAVIKGLALAKSGEEAIRLFNRM 330
               LI+ + KC RVE+GV +F  + ++    N  T+  +I+G   A   + A  +F +M
Sbjct: 400 TYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQM 459

Query: 331 EQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSG 390
             + V  D +T   +L      G +D    IF +L + +     N+  Y  M++ + ++G
Sbjct: 460 VSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMEL--NIFIYNTMIEGMCKAG 517

Query: 391 SLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVE 436
            + EA+++   +   P    + +++    S+  L+ ++ + RK+ E
Sbjct: 518 KVGEAWDLFCSLSIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKE 563



 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 79/397 (19%), Positives = 155/397 (39%), Gaps = 58/397 (14%)

Query: 117 SLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPC---HFAQAQSVHAHVLKLGHLHDIYV 173
           SLT   +F H +   I  N  T P  F    + C    FA A   +  +L+   L DI  
Sbjct: 6   SLTAKRLFVHWNLQGI-GNPPTVPSFFNLCGSGCWERSFASASGDYREILR-NRLSDIIK 63

Query: 174 HNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAG 233
            +  + ++            +        +V +  ++       KF+  +   EQMQ  G
Sbjct: 64  VDDAVDLFG----------DMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLG 113

Query: 234 VAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGV 293
           ++ +  T    +        + +   +   + + G+E D+V  ++L++ Y    R+ + V
Sbjct: 114 ISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAV 173

Query: 294 RVFSSVKE----KNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSAC 349
            +   + E     + FT+  +I GL L     EA+ L ++M Q G + D VT   V++  
Sbjct: 174 ALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGL 233

Query: 350 NHSGLVDMGRQ---------------IFGFLVEG--KY----------------GFIPNV 376
              G +D+                  IF  +++   KY                G  PNV
Sbjct: 234 CKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNV 293

Query: 377 KHYACMVDLLARSGSLREAFEVMRCM---PFDPTKAMWGSLLVSSKSQGDLEFSEFVARK 433
             Y  +++ L   G   +A  ++  M     +P    + +L+ +   +G L  +E +  +
Sbjct: 294 VTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEE 353

Query: 434 LVE--LEPANSAYYVHLSNLYAEMGRWDDVEKVRGMM 468
           +++  ++P    Y + L N +    R D+ +++   M
Sbjct: 354 MIQRSIDPDTITYNL-LINGFCMHNRLDEAKQMFKFM 389


>AT5G12100.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr5:3911388-3913838 FORWARD LENGTH=816
          Length = 816

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/370 (21%), Positives = 156/370 (42%), Gaps = 35/370 (9%)

Query: 96  PHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQA 155
           P+  I+N++I  +        +   +     M +  + P+H  +  L +     C   + 
Sbjct: 387 PNEVIYNTMIDGYCRKGDLVGARMKIE---AMEKQGMKPDHLAYNCLIRRF---CELGEM 440

Query: 156 QSVHAHVLKL---GHLHDIYVHNSLLGVYAAS---PRLFSLCRQLFDEMTHRDVVSWTVM 209
           ++    V K+   G    +  +N L+G Y       + F + +++ D  T  +VVS+  +
Sbjct: 441 ENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTL 500

Query: 210 IMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALA-ACADSGAVEMGAWIHDFIRRNG 268
           I       K  +A +    M+  GV+P +V + N L   C   G +E        + + G
Sbjct: 501 INCLCKGSKLLEAQIVKRDMEDRGVSP-KVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKG 559

Query: 269 WELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEK----NVFTWNAVIKGLALAKSGEEAI 324
            EL++V    LID  +  G++ E   +   +  K    +VFT+N++I G   A + +  I
Sbjct: 560 IELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCI 619

Query: 325 RLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVD 384
            L+  M++ G++    T   ++S C   G +++  ++F     G+    P++  Y  ++ 
Sbjct: 620 ALYEEMKRSGIKPTLKTYHLLISLCTKEG-IELTERLF-----GEMSLKPDLLVYNGVLH 673

Query: 385 LLARSGSLREAFEVMRCM---PFDPTKAMWGSLLVSSKSQGDL-----EFSEFVARKLVE 436
             A  G + +AF + + M        K  + SL++     G L        E  AR   E
Sbjct: 674 CYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAR---E 730

Query: 437 LEPANSAYYV 446
           +EP    Y +
Sbjct: 731 MEPEADTYNI 740



 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/293 (21%), Positives = 120/293 (40%), Gaps = 19/293 (6%)

Query: 193 QLFDEMTHR----DVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAAC 248
           +LF+ M H      V  + V+I G     + +DA   F++M    + P+ +T    +   
Sbjct: 200 ELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGY 259

Query: 249 ADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKE----KNV 304
             +G  E    + + ++ +  E  ++    L+    K G VE+   V   +K+     + 
Sbjct: 260 CKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDA 319

Query: 305 FTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGF 364
           FT++ +  G +  +  E A+ ++      GV+ +  T   +L+A    G ++   +I G 
Sbjct: 320 FTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILG- 378

Query: 365 LVEGKYGFIPNVKHYACMVDLLARSGSL---REAFEVMRCMPFDPTKAMWGSLLVSSKSQ 421
             E   G +PN   Y  M+D   R G L   R   E M      P    +  L+      
Sbjct: 379 -REMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCEL 437

Query: 422 GDLEFSEFVAR--KLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQ 472
           G++E +E      KL  + P+   Y +    L    GR  + +K   ++K+ +
Sbjct: 438 GEMENAEKEVNKMKLKGVSPSVETYNI----LIGGYGRKYEFDKCFDILKEME 486


>AT2G34370.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:14510482-14511891 FORWARD
           LENGTH=469
          Length = 469

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 108/223 (48%), Gaps = 5/223 (2%)

Query: 218 KFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGT 277
           K  +AL   + ++  G   +   ++     C +  A+E    +HD I      LD     
Sbjct: 92  KIREALEVIDILEDKGYIVDFPRLLGLAKLCGEVEALEEARVVHDCIT----PLDARSYH 147

Query: 278 ALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRA 337
            +I+MY+ C   ++ + VF+ + ++N  TW  +I+ LA    GE AI +F R  ++G + 
Sbjct: 148 TVIEMYSGCRSTDDALNVFNEMPKRNSETWGTMIRCLAKNGEGERAIDMFTRFIEEGNKP 207

Query: 338 DEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFE 397
           D+    AV  AC   G ++ G   F  +    YG + +++ Y  ++++LA  G L EA +
Sbjct: 208 DKEIFKAVFFACVSIGDINEGLLHFESMYRD-YGMVLSMEDYVNVIEMLAACGHLDEALD 266

Query: 398 VMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPA 440
            +  M  +P+  MW +L+     QG LE  +  A  + +L+ +
Sbjct: 267 FVERMTVEPSVEMWETLMNLCWVQGYLELGDRFAELIKKLDAS 309


>AT2G16880.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:7312262-7314493 REVERSE
           LENGTH=743
          Length = 743

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 140/321 (43%), Gaps = 17/321 (5%)

Query: 94  PRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSL-SAPCHF 152
           P P   +F+  + A+ H    H     L IF  M R  + PN  T   L   L   P  F
Sbjct: 127 PPPSKALFDIALSAYLHEGKPH---VALQIFQKMIRLKLKPNLLTCNTLLIGLVRYPSSF 183

Query: 153 A--QAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFS----LCRQLFDEMTHRDVVSW 206
           +   A+ V   ++K+G   ++   N L+  Y    +L      L R + +   + D V++
Sbjct: 184 SISSAREVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTY 243

Query: 207 TVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRR 266
             ++      G+  D       M+  G+ PNRVT  N +      G+++    I + +++
Sbjct: 244 NTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQ 303

Query: 267 NGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVK----EKNVFTWNAVIKGLALAKSGEE 322
                D+     LI+     G + EG+ +  ++K    + +V T+N +I G        E
Sbjct: 304 TNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGLSLE 363

Query: 323 AIRLFNRMEQDGVRADEVT-LLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYAC 381
           A +L  +ME DGV+A++VT  +++   C       + R++   +    +GF P++  Y  
Sbjct: 364 ARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELV--DMHGFSPDIVTYHT 421

Query: 382 MVDLLARSGSLREAFEVMRCM 402
           ++    + G L  A E+MR M
Sbjct: 422 LIKAYLKVGDLSGALEMMREM 442



 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 93/205 (45%), Gaps = 11/205 (5%)

Query: 202 DVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIH 261
           D V++  +IMGF    K + AL  +++M+   + P   T  + +      G  E+     
Sbjct: 485 DEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKF 544

Query: 262 DFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFS-SVK---EKNVFTWNAVIKGLALA 317
           D +  +G   D     ++I  Y K GRVE+    ++ S+K   + + +T N ++ GL   
Sbjct: 545 DELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKE 604

Query: 318 KSGEEAIRLFNRMEQDGVRADEVTLLAVLSA-CNHSGLVDMGRQIFGFLVE-GKYGFIPN 375
              E+A+  FN + ++    D VT   ++SA C    L    ++ +  L E  + G  P+
Sbjct: 605 GMTEKALNFFNTLIEER-EVDTVTYNTMISAFCKDKKL----KEAYDLLSEMEEKGLEPD 659

Query: 376 VKHYACMVDLLARSGSLREAFEVMR 400
              Y   + LL   G L E  E+++
Sbjct: 660 RFTYNSFISLLMEDGKLSETDELLK 684



 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/344 (21%), Positives = 138/344 (40%), Gaps = 22/344 (6%)

Query: 96  PHVFIFNSLIRAFSHSHHHHNSLTPLS-IFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQ 154
           P    +N++++A S        L+ L  +   M +N ++PN  T+  L           +
Sbjct: 238 PDNVTYNTILKAMSKKGR----LSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKE 293

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLL-GVYAASPRLFSLCRQLFDEMT----HRDVVSWTVM 209
           A  +   + +   L D+  +N L+ G+  A      L  +L D M       DVV++  +
Sbjct: 294 AFQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGL--ELMDAMKSLKLQPDVVTYNTL 351

Query: 210 IMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALA-ACADSGAVEMGAWIHDFIRRNG 268
           I G    G   +A    EQM+  GV  N+VT   +L   C +     +   + + +  +G
Sbjct: 352 IDGCFELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMHG 411

Query: 269 WELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEK----NVFTWNAVIKGLALAKSGEEAI 324
           +  D+V    LI  Y K G +   + +   + +K    N  T N ++  L   +  +EA 
Sbjct: 412 FSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAH 471

Query: 325 RLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVD 384
            L N   + G   DEVT   ++        V+   +++  +   K    P V  +  ++ 
Sbjct: 472 NLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEM--KKVKITPTVSTFNSLIG 529

Query: 385 LLARSGSLR---EAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLE 425
            L   G      E F+ +      P  + + S+++    +G +E
Sbjct: 530 GLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVE 573


>AT1G12775.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:4353906-4355840 FORWARD
           LENGTH=644
          Length = 644

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/400 (22%), Positives = 166/400 (41%), Gaps = 26/400 (6%)

Query: 94  PRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFA 153
           P P V  FN L  A + +  +      L++   M    I  + YT   +          +
Sbjct: 84  PLPTVIDFNRLFSAIAKTKQYE---LVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLS 140

Query: 154 QAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFD---EMTHR-DVVSWTVM 209
            A S    ++KLG+  D  + N+LL       R+ S   +L D   EM H+  +++   +
Sbjct: 141 YAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRV-SEALELVDRMVEMGHKPTLITLNTL 199

Query: 210 IMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGW 269
           + G    GK  DA++  ++M   G  PN VT    L     SG   +   +   +     
Sbjct: 200 VNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNI 259

Query: 270 ELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEK----NVFTWNAVIKGLALAKSGEEAIR 325
           +LD V  + +ID   K G ++    +F+ ++ K    ++ T+N +I G   A   ++  +
Sbjct: 260 KLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAK 319

Query: 326 LFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDL 385
           L   M +  +  + VT   ++ +    G +    Q+   +++   G  PN   Y  ++D 
Sbjct: 320 LLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQ--RGIAPNTITYNSLIDG 377

Query: 386 LARSGSLREAFEVMRCM---PFDPTKAMWGSLL----VSSKSQGDLE-FSEFVARKLVEL 437
             +   L EA +++  M     DP    +  L+     +++    LE F E   R ++  
Sbjct: 378 FCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVI-- 435

Query: 438 EPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDL 477
             AN+  Y  L   + + G+ +  +K+   M  R++  D+
Sbjct: 436 --ANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDI 473



 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/326 (20%), Positives = 143/326 (43%), Gaps = 12/326 (3%)

Query: 121 LSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGV 180
           + +   M    I  +   +  +   L        A ++   +   G   DI  +N+L+G 
Sbjct: 248 MELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGG 307

Query: 181 YAASPRL---FSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPN 237
           +  + R      L R +       +VV+++V+I  F   GK  +A    ++M   G+APN
Sbjct: 308 FCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPN 367

Query: 238 RVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFS 297
            +T  + +        +E    + D +   G + D++    LI+ Y K  R+++G+ +F 
Sbjct: 368 TITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFR 427

Query: 298 SVKEK----NVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSG 353
            +  +    N  T+N +++G   +   E A +LF  M    VR D V+   +L     +G
Sbjct: 428 EMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNG 487

Query: 354 LVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTK--AMW 411
            ++   +IFG + + K     ++  Y  ++  +  +  + +A+++   +P    K  A  
Sbjct: 488 ELEKALEIFGKIEKSKMEL--DIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARA 545

Query: 412 GSLLVSSKSQGD-LEFSEFVARKLVE 436
            ++++S   + D L  ++ + RK+ E
Sbjct: 546 YNIMISELCRKDSLSKADILFRKMTE 571



 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 75/356 (21%), Positives = 154/356 (43%), Gaps = 23/356 (6%)

Query: 121 LSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGV 180
           + +F  M ++  LP    F  LF +++    +    ++   +   G  H IY  + ++  
Sbjct: 73  VDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINC 132

Query: 181 YAASPRL---FSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPN 237
           +    +L   FS   ++       D V +  ++ G     +  +AL   ++M   G  P 
Sbjct: 133 FCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPT 192

Query: 238 RVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFS 297
            +T+   +     +G V     + D +   G++ + V    ++++  K G+    + +  
Sbjct: 193 LITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLR 252

Query: 298 SVKEKNV----FTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSG 353
            ++E+N+      ++ +I GL    S + A  LFN ME  G +AD +T   ++    ++G
Sbjct: 253 KMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAG 312

Query: 354 LVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCM---PFDPTKAM 410
             D G ++   +++ K    PNV  ++ ++D   + G LREA ++++ M      P    
Sbjct: 313 RWDDGAKLLRDMIKRKIS--PNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTIT 370

Query: 411 WGSLLVSSKSQGDLEFSEFVARKLVEL------EPANSAYYVHLSNLYAEMGRWDD 460
           + SL+     +  LE     A ++V+L      +P    + + L N Y +  R DD
Sbjct: 371 YNSLIDGFCKENRLE----EAIQMVDLMISKGCDPDIMTFNI-LINGYCKANRIDD 421


>AT5G39710.1 | Symbols: EMB2745 | Tetratricopeptide repeat
           (TPR)-like superfamily protein | chr5:15895729-15897972
           FORWARD LENGTH=747
          Length = 747

 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 89/367 (24%), Positives = 155/367 (42%), Gaps = 47/367 (12%)

Query: 96  PHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQA 155
           P+VF +N LIR F  +    N    L++F  M     LPN  T+  L   +   C     
Sbjct: 203 PNVFTYNILIRGFCFA---GNIDVALTLFDKMETKGCLPNVVTYNTL---IDGYC----- 251

Query: 156 QSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFS-------LCRQ--------LFDEMTH 200
                   KL  + D +     + +    P L S       LCR+        +  EM  
Sbjct: 252 --------KLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNR 303

Query: 201 R----DVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEM 256
           R    D V++  +I G+   G F  AL+   +M   G+ P+ +T  + + +   +G +  
Sbjct: 304 RGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNR 363

Query: 257 GAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEK----NVFTWNAVIK 312
                D +R  G   +    T L+D +++ G + E  RV   + +     +V T+NA+I 
Sbjct: 364 AMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALIN 423

Query: 313 GLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGF 372
           G  +    E+AI +   M++ G+  D V+   VLS    S  VD   ++   +VE   G 
Sbjct: 424 GHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEK--GI 481

Query: 373 IPNVKHYACMVDLLARSGSLREA---FEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEF 429
            P+   Y+ ++         +EA   +E M  +   P +  + +L+ +   +GDLE +  
Sbjct: 482 KPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQ 541

Query: 430 VARKLVE 436
           +  ++VE
Sbjct: 542 LHNEMVE 548



 Score = 79.3 bits (194), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 82/359 (22%), Positives = 159/359 (44%), Gaps = 28/359 (7%)

Query: 132 ILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLC 191
           ++ ++     + K+LS   H AQA          G +  +  +N++L     S R  S  
Sbjct: 140 VVKSYSRLSLIDKALSI-VHLAQAH---------GFMPGVLSYNAVLDATIRSKRNISFA 189

Query: 192 RQLFDEMTHR----DVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAA 247
             +F EM       +V ++ ++I GF  AG  D AL  F++M+  G  PN VT    +  
Sbjct: 190 ENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDG 249

Query: 248 CADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEK----N 303
                 ++ G  +   +   G E +++    +I+   + GR++E   V + +  +    +
Sbjct: 250 YCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLD 309

Query: 304 VFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFG 363
             T+N +IKG     +  +A+ +   M + G+    +T  +++ +   +G  +M R +  
Sbjct: 310 EVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAG--NMNRAM-E 366

Query: 364 FLVEGKY-GFIPNVKHYACMVDLLARSGSLREAFEVMRCMP---FDPTKAMWGSLLVSSK 419
           FL + +  G  PN + Y  +VD  ++ G + EA+ V+R M    F P+   + +L+    
Sbjct: 367 FLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHC 426

Query: 420 SQGDLEFSEFVARKLVE--LEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKD 476
             G +E +  V   + E  L P   +Y   LS  +      D+  +V+  M ++ +  D
Sbjct: 427 VTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSG-FCRSYDVDEALRVKREMVEKGIKPD 484



 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/327 (20%), Positives = 140/327 (42%), Gaps = 23/327 (7%)

Query: 96  PHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQA 155
           P V  + SLI +   + + + ++  L     M    + PN  T+  L    S   +  +A
Sbjct: 343 PSVITYTSLIHSMCKAGNMNRAMEFLD---QMRVRGLCPNERTYTTLVDGFSQKGYMNEA 399

Query: 156 QSVHAHVLKLGHLHDIYVHNSLLGVYAASPRL---FSLCRQLFDEMTHRDVVSWTVMIMG 212
             V   +   G    +  +N+L+  +  + ++    ++   + ++    DVVS++ ++ G
Sbjct: 400 YRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSG 459

Query: 213 FRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELD 272
           F  +   D+AL    +M   G+ P+ +T  + +    +    +    +++ + R G   D
Sbjct: 460 FCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPD 519

Query: 273 VVLGTALIDMYAKCGRVEEGVRVFSSVKEK----NVFTWNAVIKGLALAKSGEEAIRLFN 328
               TALI+ Y   G +E+ +++ + + EK    +V T++ +I GL       EA RL  
Sbjct: 520 EFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLL 579

Query: 329 RMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKY-------------GFIPN 375
           ++  +     +VT   ++  C++     +   I GF ++G                  P+
Sbjct: 580 KLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPD 639

Query: 376 VKHYACMVDLLARSGSLREAFEVMRCM 402
              Y  M+    R+G +R+A+ + + M
Sbjct: 640 GTAYNIMIHGHCRAGDIRKAYTLYKEM 666


>AT3G59040.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:21821495-21823919 REVERSE
           LENGTH=590
          Length = 590

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/313 (21%), Positives = 130/313 (41%), Gaps = 14/313 (4%)

Query: 94  PRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFA 153
           P P    +  +++ F        +           ++ + P+   +  +        ++ 
Sbjct: 212 PEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYE 271

Query: 154 QAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGF 213
           +A+ V + ++  G       +NSL+    +   +  +  Q+       DVVS+ ++I  +
Sbjct: 272 KARKVFSSMVGKGVPQSTVTYNSLMSFETSYKEVSKIYDQMQRSDIQPDVVSYALLIKAY 331

Query: 214 RNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDV 273
             A + ++AL  FE+M  AGV P        L A A SG VE    +   +RR+    D+
Sbjct: 332 GRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDL 391

Query: 274 VLGTALIDMYAKCGRVEEGVRVFSSVK----EKNVFTWNAVIKGLALAKSGEEAIRLFNR 329
              T ++  Y     +E   + F  +K    E N+ T+  +IKG A A   E+ + ++ +
Sbjct: 392 WSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEK 451

Query: 330 MEQDGVRADEVTLLAVLSA---CNHSGLVDMGRQIFGFLVEGKY-GFIPNVKHYACMVDL 385
           M   G++A++  L  ++ A   C + G         G+  E +  G  P+ K    ++ L
Sbjct: 452 MRLSGIKANQTILTTIMDASGRCKNFG------SALGWYKEMESCGVPPDQKAKNVLLSL 505

Query: 386 LARSGSLREAFEV 398
            +    L EA E+
Sbjct: 506 ASTQDELEEAKEL 518



 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 141/298 (47%), Gaps = 22/298 (7%)

Query: 178 LGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPN 237
           LG +  + R+ S+  ++    +  +V+S+T ++  +   GK ++A   F +MQ +G  P+
Sbjct: 159 LGNFNGAERVLSVLSKM---GSTPNVISYTALMESYGRGGKCNNAEAIFRRMQSSGPEPS 215

Query: 238 RVTMVNALAACADSGAVEMGAWIHDFI---RRNGWELDVVLGTALIDMYAKCGRVEEGVR 294
            +T    L    +    +    + + +   +++  + D  +   +I MY K G  E+  +
Sbjct: 216 AITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARK 275

Query: 295 VFSSVKEKNV----FTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACN 350
           VFSS+  K V     T+N++   ++   S +E  +++++M++  ++ D V+   ++ A  
Sbjct: 276 VFSSMVGKGVPQSTVTYNSL---MSFETSYKEVSKIYDQMQRSDIQPDVVSYALLIKAYG 332

Query: 351 HSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFD---PT 407
            +   +    +F  +++   G  P  K Y  ++D  A SG + +A  V + M  D   P 
Sbjct: 333 RARREEEALSVFEEMLDA--GVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPD 390

Query: 408 KAMWGSLLVSSKSQGDLEFSE-FVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKV 464
              + ++L +  +  D+E +E F  R  V+    N   Y  L   YA   + +DVEK+
Sbjct: 391 LWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYA---KANDVEKM 445


>AT1G18900.2 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:6529778-6532360 FORWARD
           LENGTH=860
          Length = 860

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 120/245 (48%), Gaps = 11/245 (4%)

Query: 166 GHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMT----HRDVVSWTVMIMGFRNAGKFDD 221
           G  HD + + +++G    + + F    +L DEM       + V++  +I  +  A   ++
Sbjct: 359 GFKHDGHTYTTMVGNLGRA-KQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNE 417

Query: 222 ALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALID 281
           A+  F QMQ AG  P+RVT    +   A +G +++   ++  ++  G   D    + +I+
Sbjct: 418 AMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIIN 477

Query: 282 MYAKCGRVEEGVRVFSSVKEK----NVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRA 337
              K G +    ++F  + ++    N+ T+N ++   A A++ + A++L+  M+  G   
Sbjct: 478 CLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEP 537

Query: 338 DEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFE 397
           D+VT   V+    H G ++    +F  + +  +  IP+   Y  +VDL  ++G++ +A++
Sbjct: 538 DKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNW--IPDEPVYGLLVDLWGKAGNVEKAWQ 595

Query: 398 VMRCM 402
             + M
Sbjct: 596 WYQAM 600



 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/272 (20%), Positives = 114/272 (41%), Gaps = 11/272 (4%)

Query: 95  RPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQ 154
           +P+   +N LI ++  +++ + ++   ++F  M      P+  T+  L    +       
Sbjct: 396 QPNTVTYNRLIHSYGRANYLNEAM---NVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDI 452

Query: 155 AQSVHAHVLKLGHLHDIYVHNSL---LGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIM 211
           A  ++  +   G   D + ++ +   LG     P    L  ++ D+    ++V++ +M+ 
Sbjct: 453 AMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMD 512

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
               A  + +AL  +  MQ AG  P++VT    +      G +E    +   +++  W  
Sbjct: 513 LHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIP 572

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSV----KEKNVFTWNAVIKGLALAKSGEEAIRLF 327
           D  +   L+D++ K G VE+  + + ++       NV T N+++          EA  L 
Sbjct: 573 DEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELL 632

Query: 328 NRMEQDGVRADEVTLLAVLSACNHS-GLVDMG 358
             M   G+R    T   +LS C      +DMG
Sbjct: 633 QNMLALGLRPSLQTYTLLLSCCTDGRSKLDMG 664


>AT1G18900.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:6529778-6532360 FORWARD
           LENGTH=860
          Length = 860

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 120/245 (48%), Gaps = 11/245 (4%)

Query: 166 GHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMT----HRDVVSWTVMIMGFRNAGKFDD 221
           G  HD + + +++G    + + F    +L DEM       + V++  +I  +  A   ++
Sbjct: 359 GFKHDGHTYTTMVGNLGRA-KQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNE 417

Query: 222 ALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALID 281
           A+  F QMQ AG  P+RVT    +   A +G +++   ++  ++  G   D    + +I+
Sbjct: 418 AMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIIN 477

Query: 282 MYAKCGRVEEGVRVFSSVKEK----NVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRA 337
              K G +    ++F  + ++    N+ T+N ++   A A++ + A++L+  M+  G   
Sbjct: 478 CLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEP 537

Query: 338 DEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFE 397
           D+VT   V+    H G ++    +F  + +  +  IP+   Y  +VDL  ++G++ +A++
Sbjct: 538 DKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNW--IPDEPVYGLLVDLWGKAGNVEKAWQ 595

Query: 398 VMRCM 402
             + M
Sbjct: 596 WYQAM 600



 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/272 (20%), Positives = 114/272 (41%), Gaps = 11/272 (4%)

Query: 95  RPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQ 154
           +P+   +N LI ++  +++ + ++   ++F  M      P+  T+  L    +       
Sbjct: 396 QPNTVTYNRLIHSYGRANYLNEAM---NVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDI 452

Query: 155 AQSVHAHVLKLGHLHDIYVHNSL---LGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIM 211
           A  ++  +   G   D + ++ +   LG     P    L  ++ D+    ++V++ +M+ 
Sbjct: 453 AMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMD 512

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
               A  + +AL  +  MQ AG  P++VT    +      G +E    +   +++  W  
Sbjct: 513 LHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIP 572

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSV----KEKNVFTWNAVIKGLALAKSGEEAIRLF 327
           D  +   L+D++ K G VE+  + + ++       NV T N+++          EA  L 
Sbjct: 573 DEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELL 632

Query: 328 NRMEQDGVRADEVTLLAVLSACNHS-GLVDMG 358
             M   G+R    T   +LS C      +DMG
Sbjct: 633 QNMLALGLRPSLQTYTLLLSCCTDGRSKLDMG 664


>AT3G59040.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:21821495-21824233 REVERSE
           LENGTH=583
          Length = 583

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/313 (21%), Positives = 130/313 (41%), Gaps = 14/313 (4%)

Query: 94  PRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFA 153
           P P    +  +++ F        +           ++ + P+   +  +        ++ 
Sbjct: 205 PEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYE 264

Query: 154 QAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGF 213
           +A+ V + ++  G       +NSL+    +   +  +  Q+       DVVS+ ++I  +
Sbjct: 265 KARKVFSSMVGKGVPQSTVTYNSLMSFETSYKEVSKIYDQMQRSDIQPDVVSYALLIKAY 324

Query: 214 RNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDV 273
             A + ++AL  FE+M  AGV P        L A A SG VE    +   +RR+    D+
Sbjct: 325 GRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDL 384

Query: 274 VLGTALIDMYAKCGRVEEGVRVFSSVK----EKNVFTWNAVIKGLALAKSGEEAIRLFNR 329
              T ++  Y     +E   + F  +K    E N+ T+  +IKG A A   E+ + ++ +
Sbjct: 385 WSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEK 444

Query: 330 MEQDGVRADEVTLLAVLSA---CNHSGLVDMGRQIFGFLVEGKY-GFIPNVKHYACMVDL 385
           M   G++A++  L  ++ A   C + G         G+  E +  G  P+ K    ++ L
Sbjct: 445 MRLSGIKANQTILTTIMDASGRCKNFG------SALGWYKEMESCGVPPDQKAKNVLLSL 498

Query: 386 LARSGSLREAFEV 398
            +    L EA E+
Sbjct: 499 ASTQDELEEAKEL 511



 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 141/298 (47%), Gaps = 22/298 (7%)

Query: 178 LGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPN 237
           LG +  + R+ S+  ++    +  +V+S+T ++  +   GK ++A   F +MQ +G  P+
Sbjct: 152 LGNFNGAERVLSVLSKM---GSTPNVISYTALMESYGRGGKCNNAEAIFRRMQSSGPEPS 208

Query: 238 RVTMVNALAACADSGAVEMGAWIHDFI---RRNGWELDVVLGTALIDMYAKCGRVEEGVR 294
            +T    L    +    +    + + +   +++  + D  +   +I MY K G  E+  +
Sbjct: 209 AITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARK 268

Query: 295 VFSSVKEKNV----FTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACN 350
           VFSS+  K V     T+N++   ++   S +E  +++++M++  ++ D V+   ++ A  
Sbjct: 269 VFSSMVGKGVPQSTVTYNSL---MSFETSYKEVSKIYDQMQRSDIQPDVVSYALLIKAYG 325

Query: 351 HSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFD---PT 407
            +   +    +F  +++   G  P  K Y  ++D  A SG + +A  V + M  D   P 
Sbjct: 326 RARREEEALSVFEEMLDA--GVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPD 383

Query: 408 KAMWGSLLVSSKSQGDLEFSE-FVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKV 464
              + ++L +  +  D+E +E F  R  V+    N   Y  L   YA   + +DVEK+
Sbjct: 384 LWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYA---KANDVEKM 438


>AT1G18900.3 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:6529778-6532541 FORWARD
           LENGTH=886
          Length = 886

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 120/245 (48%), Gaps = 11/245 (4%)

Query: 166 GHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMT----HRDVVSWTVMIMGFRNAGKFDD 221
           G  HD + + +++G    + + F    +L DEM       + V++  +I  +  A   ++
Sbjct: 359 GFKHDGHTYTTMVGNLGRA-KQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNE 417

Query: 222 ALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALID 281
           A+  F QMQ AG  P+RVT    +   A +G +++   ++  ++  G   D    + +I+
Sbjct: 418 AMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIIN 477

Query: 282 MYAKCGRVEEGVRVFSSVKEK----NVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRA 337
              K G +    ++F  + ++    N+ T+N ++   A A++ + A++L+  M+  G   
Sbjct: 478 CLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEP 537

Query: 338 DEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFE 397
           D+VT   V+    H G ++    +F  + +  +  IP+   Y  +VDL  ++G++ +A++
Sbjct: 538 DKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNW--IPDEPVYGLLVDLWGKAGNVEKAWQ 595

Query: 398 VMRCM 402
             + M
Sbjct: 596 WYQAM 600



 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/272 (20%), Positives = 114/272 (41%), Gaps = 11/272 (4%)

Query: 95  RPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQ 154
           +P+   +N LI ++  +++ + ++   ++F  M      P+  T+  L    +       
Sbjct: 396 QPNTVTYNRLIHSYGRANYLNEAM---NVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDI 452

Query: 155 AQSVHAHVLKLGHLHDIYVHNSL---LGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIM 211
           A  ++  +   G   D + ++ +   LG     P    L  ++ D+    ++V++ +M+ 
Sbjct: 453 AMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMD 512

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
               A  + +AL  +  MQ AG  P++VT    +      G +E    +   +++  W  
Sbjct: 513 LHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIP 572

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSV----KEKNVFTWNAVIKGLALAKSGEEAIRLF 327
           D  +   L+D++ K G VE+  + + ++       NV T N+++          EA  L 
Sbjct: 573 DEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELL 632

Query: 328 NRMEQDGVRADEVTLLAVLSACNHS-GLVDMG 358
             M   G+R    T   +LS C      +DMG
Sbjct: 633 QNMLALGLRPSLQTYTLLLSCCTDGRSKLDMG 664


>AT5G61990.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:24900186-24903110 REVERSE
           LENGTH=974
          Length = 974

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/367 (22%), Positives = 136/367 (37%), Gaps = 51/367 (13%)

Query: 96  PHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQA 155
           P +F +NSLI   S +     +    S    M  N + PN +T+            FA A
Sbjct: 485 PDIFCYNSLIIGLSKAKRMDEAR---SFLVEMVENGLKPNAFTYGAFISGYIEASEFASA 541

Query: 156 QSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLC------------------------ 191
                 + + G L +  +   L+  Y    ++   C                        
Sbjct: 542 DKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNG 601

Query: 192 ----------RQLFDEMTHR----DVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPN 237
                      ++F EM  +    DV S+ V+I GF   G    A   F++M   G+ PN
Sbjct: 602 LFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPN 661

Query: 238 RVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFS 297
            +     L     SG +E    + D +   G   + V    +ID Y K G + E  R+F 
Sbjct: 662 VIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFD 721

Query: 298 SVKEKNV----FTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSG 353
            +K K +    F +  ++ G       E AI +F    + G  +      A+++     G
Sbjct: 722 EMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFG-TNKKGCASSTAPFNALINWVFKFG 780

Query: 354 LVDMGRQIFGFLVEGKYGFI--PNVKHYACMVDLLARSGSL---REAFEVMRCMPFDPTK 408
             ++  ++   L++G +     PN   Y  M+D L + G+L   +E F  M+     PT 
Sbjct: 781 KTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTV 840

Query: 409 AMWGSLL 415
             + SLL
Sbjct: 841 ITYTSLL 847



 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 146/353 (41%), Gaps = 33/353 (9%)

Query: 123 IFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYA 182
           IF  M    I P+ +++  L    S   +  +A S+   +++ G   ++ ++N LLG + 
Sbjct: 614 IFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFC 673

Query: 183 ASPRLFSLCRQLFDEMT----HRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNR 238
            S  +    ++L DEM+    H + V++  +I G+  +G   +A   F++M+  G+ P+ 
Sbjct: 674 RSGEI-EKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDS 732

Query: 239 VTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRV--- 295
                 +  C     VE    I     + G         ALI+   K G+ E    V   
Sbjct: 733 FVYTTLVDGCCRLNDVERAITIFG-TNKKGCASSTAPFNALINWVFKFGKTELKTEVLNR 791

Query: 296 -----FSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACN 350
                F    + N  T+N +I  L    + E A  LF++M+   +    +T  ++L    
Sbjct: 792 LMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLL---- 847

Query: 351 HSGLVDMGR--QIFGFLVEG-KYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPT 407
            +G   MGR  ++F    E    G  P+   Y+ +++   + G   +A  ++  M F   
Sbjct: 848 -NGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQM-FAKN 905

Query: 408 KAMWG---------SLLVSSKSQGDLEFSEFVARKLVELE-PANSAYYVHLSN 450
               G         +LL      G++E +E V   +V L+   +SA  + L N
Sbjct: 906 AVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELIN 958



 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 85/407 (20%), Positives = 159/407 (39%), Gaps = 57/407 (14%)

Query: 122 SIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVY 181
           ++F  M  + ++P    +  L +      +  Q   +   + K   +   Y + +++   
Sbjct: 368 ALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGM 427

Query: 182 AASPRL---FSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPN- 237
            +S  L   +++ +++       +VV +T +I  F    +F DA+   ++M+  G+AP+ 
Sbjct: 428 CSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDI 487

Query: 238 -------------------RVTMVNALAACADSGAVEMGAWIHDFI-------------- 264
                              R  +V  +       A   GA+I  +I              
Sbjct: 488 FCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKE 547

Query: 265 -RRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVF----TWNAVIKGLALAKS 319
            R  G   + VL T LI+ Y K G+V E    + S+ ++ +     T+  ++ GL     
Sbjct: 548 MRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDK 607

Query: 320 GEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHY 379
            ++A  +F  M   G+  D  +   +++  +  G +     IF  +VE   G  PNV  Y
Sbjct: 608 VDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVE--EGLTPNVIIY 665

Query: 380 ACMVDLLARSGSLREAFEVMRCMPFD---PTKAMWGSLLVSSKSQGDL--EFSEFVARKL 434
             ++    RSG + +A E++  M      P    + +++      GDL   F  F   KL
Sbjct: 666 NMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKL 725

Query: 435 VELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSS 481
             L P +  Y    + L     R +DVE+   +      T   GC+S
Sbjct: 726 KGLVPDSFVY----TTLVDGCCRLNDVERAITIFG----TNKKGCAS 764


>AT1G74750.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:28086800-28089367 FORWARD
           LENGTH=855
          Length = 855

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 119/245 (48%), Gaps = 11/245 (4%)

Query: 166 GHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHR----DVVSWTVMIMGFRNAGKFDD 221
           G  HD + + +++G    + + F    +L DEM       + V++  +I  +  A    +
Sbjct: 354 GFKHDGHTYTTMVGNLGRA-KQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKE 412

Query: 222 ALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALID 281
           A+  F QMQ AG  P+RVT    +   A +G +++   ++  ++  G   D    + +I+
Sbjct: 413 AMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIIN 472

Query: 282 MYAKCGRVEEGVRVFSSVKEK----NVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRA 337
              K G +    R+F  +  +    N+ T+N +I   A A++ E A++L+  M+  G + 
Sbjct: 473 CLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQP 532

Query: 338 DEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFE 397
           D+VT   V+    H G ++    +F  +   +  ++P+   Y  +VDL  ++G++ +A++
Sbjct: 533 DKVTYSIVMEVLGHCGFLEEAEGVFAEMQ--RKNWVPDEPVYGLLVDLWGKAGNVDKAWQ 590

Query: 398 VMRCM 402
             + M
Sbjct: 591 WYQAM 595



 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/273 (20%), Positives = 116/273 (42%), Gaps = 13/273 (4%)

Query: 95  RPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQ 154
           +P+   +N LI ++  +++   ++   ++F  M      P+  T+  L    +       
Sbjct: 391 KPNTVTYNRLIHSYGRANYLKEAM---NVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDI 447

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHR----DVVSWTVMI 210
           A  ++  + + G   D + ++ ++     +  L +  R LF EM  +    ++V++ +MI
Sbjct: 448 AMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHR-LFCEMVGQGCTPNLVTFNIMI 506

Query: 211 MGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWE 270
                A  ++ AL  +  MQ AG  P++VT    +      G +E    +   ++R  W 
Sbjct: 507 ALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWV 566

Query: 271 LDVVLGTALIDMYAKCGRVEEGVRVFSSVKE----KNVFTWNAVIKGLALAKSGEEAIRL 326
            D  +   L+D++ K G V++  + + ++ +     NV T N+++          EA  L
Sbjct: 567 PDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNL 626

Query: 327 FNRMEQDGVRADEVTLLAVLSACNHS-GLVDMG 358
              M   G+     T   +LS C  +    DMG
Sbjct: 627 LQSMLALGLHPSLQTYTLLLSCCTDARSNFDMG 659


>AT1G62670.1 | Symbols: RPF2 | rna processing factor 2 |
           chr1:23204773-23206665 REVERSE LENGTH=630
          Length = 630

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/432 (21%), Positives = 174/432 (40%), Gaps = 55/432 (12%)

Query: 96  PHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQA 155
           P++   +SL+  + HS     ++   ++   M      PN  TF  L   L      ++A
Sbjct: 149 PNIVTLSSLLNGYCHSKRISEAV---ALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEA 205

Query: 156 QSVHAHVLKLGHLHDIYVHNSL---LGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMG 212
            ++   ++  G   D+  +  +   L     +   F+L  ++        V+ +  +I G
Sbjct: 206 MALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDG 265

Query: 213 FRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGA-VEMGAWIHDFIRRNGWEL 271
                  DDAL  F++M+  G+ PN VT  + ++   + G   +    + D I R     
Sbjct: 266 LCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERK-INP 324

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEK----------------------------- 302
           DV   +ALID + K G++ E  +++  + ++                             
Sbjct: 325 DVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMF 384

Query: 303 ----------NVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHS 352
                     +V T+N +IKG    K  EE + +F  M Q G+  + VT   ++     +
Sbjct: 385 EFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQA 444

Query: 353 GLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREA---FEVMRCMPFDPTKA 409
           G  DM ++IF  +V    G  PN+  Y  ++D L ++G L +A   FE ++    +PT  
Sbjct: 445 GDCDMAQEIFKEMVSD--GVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIY 502

Query: 410 MWGSLLVSSKSQGDLE--FSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGM 467
            +  ++      G +E  +  F    L  ++P   AY   +S  +   G  ++ + +   
Sbjct: 503 TYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISG-FCRKGSKEEADALFKE 561

Query: 468 MKDRQLTKDLGC 479
           MK+     + GC
Sbjct: 562 MKEDGTLPNSGC 573



 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 140/329 (42%), Gaps = 44/329 (13%)

Query: 94  PRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFA 153
           P P +  F+ L+ A +  +        +S+   M    I  NHYT+  L           
Sbjct: 77  PFPSIIEFSKLLSAIAKMNKFD---VVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLP 133

Query: 154 QAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRL---FSLCRQLFDEMTHRDVVSWTVMI 210
            A +V   ++KLG+  +I   +SLL  Y  S R+    +L  Q+F      + V++  +I
Sbjct: 134 LALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLI 193

Query: 211 MGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWE 270
            G     K  +A+   ++M   G  P+ VT                G  ++   +R    
Sbjct: 194 HGLFLHNKASEAMALIDRMVAKGCQPDLVT---------------YGVVVNGLCKRG--- 235

Query: 271 LDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRM 330
            D  L   L++   + G++E GV +           +N +I GL   K  ++A+ LF  M
Sbjct: 236 -DTDLAFNLLNKMEQ-GKLEPGVLI-----------YNTIIDGLCKYKHMDDALNLFKEM 282

Query: 331 EQDGVRADEVTLLAVLSA-CNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARS 389
           E  G+R + VT  +++S  CN+    D  R +   ++E K    P+V  ++ ++D   + 
Sbjct: 283 ETKGIRPNVVTYSSLISCLCNYGRWSDASR-LLSDMIERKIN--PDVFTFSALIDAFVKE 339

Query: 390 GSLREA---FEVMRCMPFDPTKAMWGSLL 415
           G L EA   ++ M     DP+   + SL+
Sbjct: 340 GKLVEAEKLYDEMVKRSIDPSIVTYSSLI 368



 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/292 (21%), Positives = 118/292 (40%), Gaps = 41/292 (14%)

Query: 194 LFDEMTHR----DVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACA 249
           LF EM        ++ ++ ++       KFD  +   EQMQ  G+  N  T    +    
Sbjct: 68  LFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFC 127

Query: 250 DSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGV----RVFSSVKEKNVF 305
               + +   +   + + G+E ++V  ++L++ Y    R+ E V    ++F +  + N  
Sbjct: 128 RRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTV 187

Query: 306 TWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFL 365
           T+N +I GL L     EA+ L +RM   G + D VT   V++     G  D+   +   +
Sbjct: 188 TFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKM 247

Query: 366 VEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLE 425
            +GK    P V  Y  ++D L +   + +A  + + M                +++G   
Sbjct: 248 EQGK--LEPGVLIYNTIIDGLCKYKHMDDALNLFKEM----------------ETKG--- 286

Query: 426 FSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDL 477
                      + P N   Y  L +     GRW D  ++   M +R++  D+
Sbjct: 287 -----------IRP-NVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDV 326


>AT1G12700.1 | Symbols:  | ATP binding;nucleic acid
           binding;helicases | chr1:4323722-4326227 REVERSE
           LENGTH=735
          Length = 735

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 88/387 (22%), Positives = 162/387 (41%), Gaps = 54/387 (13%)

Query: 95  RPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQ 154
           +P V  +NS++     S    ++   L +   M    +  + +T+  +  SL        
Sbjct: 190 QPDVVTYNSIVNGICRSG---DTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDA 246

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLL-GVYAASPRLFSLCRQLFDEMTHRDVV----SWTVM 209
           A S+   +   G    +  +NSL+ G+  A    ++    L  +M  R++V    ++ V+
Sbjct: 247 AISLFKEMETKGIKSSVVTYNSLVRGLCKAGK--WNDGALLLKDMVSREIVPNVITFNVL 304

Query: 210 IMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGW 269
           +  F   GK  +A   +++M   G++PN +T    +        +     + D + RN  
Sbjct: 305 LDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKC 364

Query: 270 ELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEK----NVFTWNAVIKGLALAKSGEEAIR 325
             D+V  T+LI  Y    RV++G++VF ++ ++    N  T++ +++G   +   + A  
Sbjct: 365 SPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEE 424

Query: 326 LFNRMEQDGVRADEVTLLAVLSA-CNHSGL--------------VDMGRQIFGFLVEGK- 369
           LF  M   GV  D +T   +L   C++  L              +D+G  ++  ++EG  
Sbjct: 425 LFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMC 484

Query: 370 -----------------YGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFD---PTKA 409
                             G  PNV  Y  M+  L + GSL EA  ++R M  D   P   
Sbjct: 485 KGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDC 544

Query: 410 MWGSLLVSSKSQGDLEFSEFVARKLVE 436
            + +L+ +    GDL  S     KL+E
Sbjct: 545 TYNTLIRAHLRDGDLTASA----KLIE 567



 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 81/378 (21%), Positives = 148/378 (39%), Gaps = 52/378 (13%)

Query: 94  PRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFA 153
           P P +  F+    A + +   +     L     +  N I  N YT   +       C   
Sbjct: 84  PLPSLVDFSRFFSAIARTKQFN---LVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTC 140

Query: 154 QAQSVHAHVLKLGHLHDIYVHNSLL-GVY------------------AASPRLFS----- 189
            A SV   V+KLG+  D    N+L+ G++                     P + +     
Sbjct: 141 FAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIV 200

Query: 190 --LCR--------QLFDEMTHR----DVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVA 235
             +CR         L  +M  R    DV +++ +I      G  D A+  F++M+  G+ 
Sbjct: 201 NGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIK 260

Query: 236 PNRVTMVNALAACADSGAVEMGA-WIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVR 294
            + VT  + +     +G    GA  + D + R     +V+    L+D++ K G+++E   
Sbjct: 261 SSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVP-NVITFNVLLDVFVKEGKLQEANE 319

Query: 295 VFSSVKEK----NVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACN 350
           ++  +  +    N+ T+N ++ G  +     EA  + + M ++    D VT  +++    
Sbjct: 320 LYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYC 379

Query: 351 HSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLR---EAFEVMRCMPFDPT 407
               VD G ++F  +   K G + N   Y+ +V    +SG ++   E F+ M      P 
Sbjct: 380 MVKRVDDGMKVFRNI--SKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPD 437

Query: 408 KAMWGSLLVSSKSQGDLE 425
              +G LL      G LE
Sbjct: 438 VMTYGILLDGLCDNGKLE 455



 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/335 (21%), Positives = 144/335 (42%), Gaps = 33/335 (9%)

Query: 158 VHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAG 217
           +  H+LK G L        LL   ++    FS C + F  +++ +V     +  G  +  
Sbjct: 17  IQPHLLKTGSLR-----TDLLCTISS---FFSSCERDFSSISNGNVCFRERLRSGIVDIK 68

Query: 218 KFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRR---NGWELDVV 274
           K DDA+  F++M  +   P+ V      +A A +    +   + DF ++   NG   ++ 
Sbjct: 69  K-DDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNL---VLDFCKQLELNGIAHNIY 124

Query: 275 LGTALIDMYAKCGRVEEGVRVFSSVK----EKNVFTWNAVIKGLALAKSGEEAIRLFNRM 330
               +I+ + +C +      V   V     E +  T+N +IKGL L     EA+ L +RM
Sbjct: 125 TLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRM 184

Query: 331 EQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSG 390
            ++G + D VT  ++++    SG   +   +   + E       +V  Y+ ++D L R G
Sbjct: 185 VENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVK--ADVFTYSTIIDSLCRDG 242

Query: 391 SLREAFEVMRCMPFDPTKA---MWGSLL-----VSSKSQGDLEFSEFVARKLVELEPANS 442
            +  A  + + M     K+    + SL+         + G L   + V+R++V     N 
Sbjct: 243 CIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIV----PNV 298

Query: 443 AYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDL 477
             +  L +++ + G+  +  ++   M  R ++ ++
Sbjct: 299 ITFNVLLDVFVKEGKLQEANELYKEMITRGISPNI 333


>AT1G09900.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:3218133-3219929 FORWARD
           LENGTH=598
          Length = 598

 Score = 85.9 bits (211), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 132/311 (42%), Gaps = 12/311 (3%)

Query: 96  PHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQA 155
           P V  +N L+           ++  L+    M  +   PN  T   + +S+ +   +  A
Sbjct: 272 PDVVTYNVLVNGICKEGRLDEAIKFLN---DMPSSGCQPNVITHNIILRSMCSTGRWMDA 328

Query: 156 QSVHAHVLKLGHLHDIYVHNSLLGVYAASP---RLFSLCRQLFDEMTHRDVVSWTVMIMG 212
           + + A +L+ G    +   N L+          R   +  ++       + +S+  ++ G
Sbjct: 329 EKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHG 388

Query: 213 FRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELD 272
           F    K D A+   E+M   G  P+ VT    L A    G VE    I + +   G    
Sbjct: 389 FCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPV 448

Query: 273 VVLGTALIDMYAKCGRVEEGVRVFSSVKEKNV----FTWNAVIKGLALAKSGEEAIRLFN 328
           ++    +ID  AK G+  + +++   ++ K++     T+++++ GL+     +EAI+ F+
Sbjct: 449 LITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFH 508

Query: 329 RMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLAR 388
             E+ G+R + VT  +++     S   D       F++    G  PN   Y  +++ LA 
Sbjct: 509 EFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMI--NRGCKPNETSYTILIEGLAY 566

Query: 389 SGSLREAFEVM 399
            G  +EA E++
Sbjct: 567 EGMAKEALELL 577



 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/267 (18%), Positives = 110/267 (41%), Gaps = 10/267 (3%)

Query: 95  RPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQ 154
           +P+V   N ++R+   +    ++     + A M R    P+  TF  L   L       +
Sbjct: 306 QPNVITHNIILRSMCSTGRWMDAE---KLLADMLRKGFSPSVVTFNILINFLCRKGLLGR 362

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRL---FSLCRQLFDEMTHRDVVSWTVMIM 211
           A  +   + + G   +   +N LL  +    ++        ++     + D+V++  M+ 
Sbjct: 363 AIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLT 422

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
                GK +DA+    Q+   G +P  +T    +   A +G       + D +R    + 
Sbjct: 423 ALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKP 482

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVK----EKNVFTWNAVIKGLALAKSGEEAIRLF 327
           D +  ++L+   ++ G+V+E ++ F   +      N  T+N+++ GL  ++  + AI   
Sbjct: 483 DTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFL 542

Query: 328 NRMEQDGVRADEVTLLAVLSACNHSGL 354
             M   G + +E +   ++    + G+
Sbjct: 543 VFMINRGCKPNETSYTILIEGLAYEGM 569



 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 81/196 (41%), Gaps = 17/196 (8%)

Query: 216 AGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVL 275
            G+ ++     E M Y G  P+ +     +      G     A I + +  +G   DV+ 
Sbjct: 115 TGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVIT 174

Query: 276 GTALIDMYAKCGRVEEGVRVFSSVK-EKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDG 334
              +I  Y K G +   + V   +    +V T+N +++ L  +   ++A+ + +RM Q  
Sbjct: 175 YNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRD 234

Query: 335 VRADEVTLLAVLSA-CNHSG------LVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLA 387
              D +T   ++ A C  SG      L+D  R           G  P+V  Y  +V+ + 
Sbjct: 235 CYPDVITYTILIEATCRDSGVGHAMKLLDEMRD---------RGCTPDVVTYNVLVNGIC 285

Query: 388 RSGSLREAFEVMRCMP 403
           + G L EA + +  MP
Sbjct: 286 KEGRLDEAIKFLNDMP 301



 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 72/341 (21%), Positives = 138/341 (40%), Gaps = 19/341 (5%)

Query: 150 CHFAQAQSVHAHVLKL----GHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVS 205
           C   + +   A +L++    G + D+  +N ++  Y  +  + +    L       DVV+
Sbjct: 148 CRLGKTRKA-AKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVSPDVVT 206

Query: 206 WTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNAL-AACADSGAVEMGAWIHDFI 264
           +  ++    ++GK   A+   ++M      P+ +T    + A C DSG V     + D +
Sbjct: 207 YNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSG-VGHAMKLLDEM 265

Query: 265 RRNGWELDVVLGTALIDMYAKCGRVEEGVRVF----SSVKEKNVFTWNAVIKGLALAKSG 320
           R  G   DVV    L++   K GR++E ++      SS  + NV T N +++ +      
Sbjct: 266 RDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRW 325

Query: 321 EEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYA 380
            +A +L   M + G     VT   +++     GL  +GR I       ++G  PN   Y 
Sbjct: 326 MDAEKLLADMLRKGFSPSVVTFNILINFLCRKGL--LGRAIDILEKMPQHGCQPNSLSYN 383

Query: 381 CMVDLLARSGSLREAFEVMRCMPFD---PTKAMWGSLLVSSKSQGDLEFSEFVARKLVE- 436
            ++    +   +  A E +  M      P    + ++L +    G +E +  +  +L   
Sbjct: 384 PLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSK 443

Query: 437 -LEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKD 476
              P    Y   +  L A+ G+     K+   M+ + L  D
Sbjct: 444 GCSPVLITYNTVIDGL-AKAGKTGKAIKLLDEMRAKDLKPD 483


>AT3G16710.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:5690020-5691543 FORWARD
           LENGTH=507
          Length = 507

 Score = 85.5 bits (210), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 91/387 (23%), Positives = 165/387 (42%), Gaps = 34/387 (8%)

Query: 94  PRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFA 153
           P P +  F  L+   +  + +      +S+F  M    I P   T   +   +       
Sbjct: 79  PLPSIIDFTRLLSVIAKMNRYD---VVISLFEQMQILGIPPLLCTCNIVMHCVCLSSQPC 135

Query: 154 QAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRL---FSLCRQLFDEMTHRDVVSWTVMI 210
           +A      ++KLG   D+    SLL  Y    R+    +L  Q+       +VV++T +I
Sbjct: 136 RASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLI 195

Query: 211 MGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAW------IHDFI 264
                    + A+  F QM   G  PN VT  NAL     +G  E+G W      + D +
Sbjct: 196 RCLCKNRHLNHAVELFNQMGTNGSRPNVVT-YNALV----TGLCEIGRWGDAAWLLRDMM 250

Query: 265 RRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKE----KNVFTWNAVIKGLALAKSG 320
           +R   E +V+  TALID + K G++ E   +++ + +     +VFT+ ++I GL +    
Sbjct: 251 KRR-IEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLL 309

Query: 321 EEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYA 380
           +EA ++F  ME++G   +EV    ++     S  V+ G +IF  +   + G + N   Y 
Sbjct: 310 DEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEM--SQKGVVANTITYT 367

Query: 381 CMVD---LLARSGSLREAFEVMRCMPFDPTKAMWGSLL----VSSKSQGDLEFSEFVARK 433
            ++    L+ R    +E F  M      P    +  LL     + K +  L   E++ ++
Sbjct: 368 VLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKR 427

Query: 434 LVELEPANSAYYVHLSNLYAEMGRWDD 460
            +++   N   Y  +     ++G+ +D
Sbjct: 428 EMDI---NIVTYTIIIQGMCKLGKVED 451



 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 115/252 (45%), Gaps = 12/252 (4%)

Query: 96  PHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQA 155
           P+V  F +LI AF        +    ++   M   ++ P+ +T+  L   L       +A
Sbjct: 256 PNVITFTALIDAFVKVGKLMEAKELYNVMIQM---SVYPDVFTYGSLINGLCMYGLLDEA 312

Query: 156 QSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVV----SWTVMIM 211
           + +   + + G   +  ++ +L+  +  S R+     ++F EM+ + VV    ++TV+I 
Sbjct: 313 RQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVED-GMKIFYEMSQKGVVANTITYTVLIQ 371

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
           G+   G+ D A   F QM      P+  T    L     +G VE    I +++R+   ++
Sbjct: 372 GYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDI 431

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEK----NVFTWNAVIKGLALAKSGEEAIRLF 327
           ++V  T +I    K G+VE+   +F S+  K    NV T+  +I G        EA  LF
Sbjct: 432 NIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLF 491

Query: 328 NRMEQDGVRADE 339
            +M++DG   +E
Sbjct: 492 KKMKEDGFLPNE 503



 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/293 (20%), Positives = 126/293 (43%), Gaps = 14/293 (4%)

Query: 95  RPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQ 154
           RP+V  +N+L+          ++     +   M +  I PN  TF  L  +        +
Sbjct: 220 RPNVVTYNALVTGLCEIGRWGDAAW---LLRDMMKRRIEPNVITFTALIDAFVKVGKLME 276

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEM----THRDVVSWTVMI 210
           A+ ++  ++++    D++ + SL+        L    RQ+F  M     + + V +T +I
Sbjct: 277 AKELYNVMIQMSVYPDVFTYGSLINGLCMYG-LLDEARQMFYLMERNGCYPNEVIYTTLI 335

Query: 211 MGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWE 270
            GF  + + +D +  F +M   GV  N +T    +      G  ++   + + +      
Sbjct: 336 HGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAP 395

Query: 271 LDVVLGTALIDMYAKCGRVEEGVRVFSSVKEK----NVFTWNAVIKGLALAKSGEEAIRL 326
            D+     L+D     G+VE+ + +F  ++++    N+ T+  +I+G+      E+A  L
Sbjct: 396 PDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDL 455

Query: 327 FNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHY 379
           F  +   G++ + +T   ++S     GL+     +F  + E   GF+PN   Y
Sbjct: 456 FCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKED--GFLPNESVY 506



 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 98/429 (22%), Positives = 169/429 (39%), Gaps = 91/429 (21%)

Query: 101 FNSLIRAFS-HSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVH 159
           F S+++ F  HSH H   ++     A +                 SL   C + +A S +
Sbjct: 9   FASIVKGFHLHSHRHRLQISNPRTAASL-----------------SLCGFCFWIRAFSSY 51

Query: 160 AHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHR----DVVSWTVMIMGFRN 215
             +L+ G LH++  +++L                LF  M H      ++ +T ++     
Sbjct: 52  RKILRNG-LHNLQFNDAL---------------DLFTRMVHSRPLPSIIDFTRLLSVIAK 95

Query: 216 AGKFDDALLAFEQMQYAGVAPNRVTMVNAL-AACADSGAVEMGAWIHDFIRRNGWELDVV 274
             ++D  +  FEQMQ  G+ P   T    +   C  S       ++   ++  G+E D+V
Sbjct: 96  MNRYDVVISLFEQMQILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKL-GFEPDLV 154

Query: 275 LGTALIDMYAKCGRVEEGVRVFSSVK----EKNVFTWNAVIKGLALAKSGEEAIRLFNRM 330
             T+L++ Y    R+E+ + +F  +     + NV T+  +I+ L   +    A+ LFN+M
Sbjct: 155 TFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQM 214

Query: 331 EQDGVRADEVTLLAVLSACNHSGLVDMGR-QIFGFLVEG--KYGFIPNVKHYACMVDLLA 387
             +G R + VT  A+++     GL ++GR     +L+    K    PNV  +  ++D   
Sbjct: 215 GTNGSRPNVVTYNALVT-----GLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFV 269

Query: 388 RSGSLREA---FEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSE---------------- 428
           + G L EA   + VM  M   P    +GSL+      G L+ +                 
Sbjct: 270 KVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEV 329

Query: 429 --------FVARKLVELE------------PANSAYYVHLSNLYAEMGRWDDVEKVRGMM 468
                   F   K VE               AN+  Y  L   Y  +GR D  ++V   M
Sbjct: 330 IYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQM 389

Query: 469 KDRQLTKDL 477
             R+   D+
Sbjct: 390 SSRRAPPDI 398


>AT2G18940.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:8203873-8206341 REVERSE
           LENGTH=822
          Length = 822

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 129/280 (46%), Gaps = 12/280 (4%)

Query: 203 VVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHD 262
            V++  ++  F  AG + +AL   ++M+      + VT    +AA   +G  +  A + +
Sbjct: 316 TVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIE 375

Query: 263 FIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKE----KNVFTWNAVIKGLALAK 318
            + + G   + +  T +ID Y K G+ +E +++F S+KE     N  T+NAV+  L    
Sbjct: 376 MMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKS 435

Query: 319 SGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKH 378
              E I++   M+ +G   +  T   +L+ C + G+     ++F  +     GF P+   
Sbjct: 436 RSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREM--KSCGFEPDRDT 493

Query: 379 YACMVDLLARSGSLREAFEV---MRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLV 435
           +  ++    R GS  +A ++   M    F+     + +LL +   +GD    E V   + 
Sbjct: 494 FNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMK 553

Query: 436 E--LEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQL 473
               +P  ++Y + L   YA+ G +  +E++   +K+ Q+
Sbjct: 554 SKGFKPTETSYSLML-QCYAKGGNYLGIERIENRIKEGQI 592



 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 130/299 (43%), Gaps = 42/299 (14%)

Query: 197 EMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEM 256
           E+   D+VS   ++ G  ++G ++ A+  FE +         V   N+ A   D   +E+
Sbjct: 133 ELLRTDLVS---LVKGLDDSGHWERAVFLFEWL---------VLSSNSGALKLDHQVIEI 180

Query: 257 -------------GAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKE-- 301
                         A + D I    + LDV   T ++  Y++ G+ E+ + +F  +KE  
Sbjct: 181 FVRILGRESQYSVAAKLLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMG 240

Query: 302 --KNVFTWNAVIKGLA-LAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMG 358
               + T+N ++     + +S  + + + + M   G++ DE T   VLSAC   GL+   
Sbjct: 241 PSPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREA 300

Query: 359 RQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFD--PTKAMWGSLLV 416
           ++ F  L     G+ P    Y  ++ +  ++G   EA  V++ M  +  P  ++  + LV
Sbjct: 301 KEFFAEL--KSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELV 358

Query: 417 SSKSQGDLEFS-----EFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKD 470
           ++  +           E + +K V     N+  Y  + + Y + G+ D+  K+   MK+
Sbjct: 359 AAYVRAGFSKEAAGVIEMMTKKGVM---PNAITYTTVIDAYGKAGKEDEALKLFYSMKE 414



 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 68/320 (21%), Positives = 127/320 (39%), Gaps = 15/320 (4%)

Query: 96  PHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQA 155
           P    FN+LI A+       ++     ++  M R        T+  L  +L+    +   
Sbjct: 489 PDRDTFNTLISAYGRCGSEVDAS---KMYGEMTRAGFNACVTTYNALLNALARKGDWRSG 545

Query: 156 QSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSW----TVMIM 211
           ++V + +   G       ++ +L  YA       + R        +   SW    T+++ 
Sbjct: 546 ENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLRTLLLA 605

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
            F+       +  AF   +  G  P+ V   + L+    +   +    I + IR +G   
Sbjct: 606 NFK-CRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSP 664

Query: 272 DVVLGTALIDMYAK---CGRVEEGVRVFSSVKEK-NVFTWNAVIKGLALAKSGEEAIRLF 327
           D+V   +L+DMY +   C + EE ++     + K ++ ++N VIKG       +EA+R+ 
Sbjct: 665 DLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRML 724

Query: 328 NRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLA 387
           + M + G+R    T    +S     G+      +   +   K    PN   +  +VD   
Sbjct: 725 SEMTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECM--AKNDCRPNELTFKMVVDGYC 782

Query: 388 RSGSLREAFE-VMRCMPFDP 406
           R+G   EA + V +   FDP
Sbjct: 783 RAGKYSEAMDFVSKIKTFDP 802



 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 113/278 (40%), Gaps = 15/278 (5%)

Query: 124 FAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAA 183
           FA +      P   T+  L +       + +A SV   + +     D   +N L+  Y  
Sbjct: 304 FAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVR 363

Query: 184 SPRLFSL-CRQLFDEMTHRDV----VSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNR 238
           +   FS     + + MT + V    +++T +I  +  AGK D+AL  F  M+ AG  PN 
Sbjct: 364 AG--FSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNT 421

Query: 239 VTMVNALAACA-DSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFS 297
            T    L+     S + EM   + D ++ NG   +      ++ +    G  +   RVF 
Sbjct: 422 CTYNAVLSLLGKKSRSNEMIKMLCD-MKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFR 480

Query: 298 SVK----EKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSG 353
            +K    E +  T+N +I       S  +A +++  M + G  A   T  A+L+A    G
Sbjct: 481 EMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKG 540

Query: 354 LVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGS 391
               G  +   +     GF P    Y+ M+   A+ G+
Sbjct: 541 DWRSGENVISDM--KSKGFKPTETSYSLMLQCYAKGGN 576



 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 73/384 (19%), Positives = 151/384 (39%), Gaps = 24/384 (6%)

Query: 96  PHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQA 155
           P+   + ++I A+  +     +L    +F  M     +PN  T+  +   L       + 
Sbjct: 384 PNAITYTTVIDAYGKAGKEDEAL---KLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEM 440

Query: 156 QSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMT----HRDVVSWTVMIM 211
             +   +   G   +    N++L +   +  +     ++F EM       D  ++  +I 
Sbjct: 441 IKMLCDMKSNGCSPNRATWNTMLAL-CGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLIS 499

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
            +   G   DA   + +M  AG      T    L A A  G    G  +   ++  G++ 
Sbjct: 500 AYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKP 559

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAK------SGEEAIR 325
                + ++  YAK G      R+ + +KE  +F    +++ L LA       +G E  R
Sbjct: 560 TETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLRTLLLANFKCRALAGSE--R 617

Query: 326 LFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDL 385
            F   ++ G + D V   ++LS    + + D    I   + E   G  P++  Y  ++D+
Sbjct: 618 AFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIRED--GLSPDLVTYNSLMDM 675

Query: 386 LARSGSLREAFEVMRCMP---FDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVE--LEPA 440
             R G   +A E+++ +      P    + +++     +G ++ +  +  ++ E  + P 
Sbjct: 676 YVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPC 735

Query: 441 NSAYYVHLSNLYAEMGRWDDVEKV 464
              Y   +S  Y  MG + ++E V
Sbjct: 736 IFTYNTFVSG-YTAMGMFAEIEDV 758


>AT1G06710.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:2056999-2060242 REVERSE
           LENGTH=997
          Length = 997

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 89/367 (24%), Positives = 153/367 (41%), Gaps = 35/367 (9%)

Query: 137 YTFPFLFKSLS-APC---HFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPR-----L 187
           Y  P +F SL  A C     + A  +   ++K GH+    V+N L+G            L
Sbjct: 369 YPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDL 428

Query: 188 FSLCRQLFDEMTHRDVVSWTVMIMGFR----NAGKFDDALLAFEQMQYAGVAPNRVTMVN 243
             L  + + EM    VV   + +  F     +AGK++ A     +M   G  P+  T   
Sbjct: 429 LDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSK 488

Query: 244 ALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKE-- 301
            L    ++  +E+   + + ++R G   DV   T ++D + K G +E+  + F+ ++E  
Sbjct: 489 VLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVG 548

Query: 302 --KNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGR 359
              NV T+ A+I     AK    A  LF  M  +G   + VT  A++     +G V+   
Sbjct: 549 CTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKAC 608

Query: 360 QIFGFLVEGK--------------YGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPF- 404
           QIF  +   K                  PNV  Y  ++D   +S  + EA +++  M   
Sbjct: 609 QIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSME 668

Query: 405 --DPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELE-PANSAYYVHLSNLYAEMGRWDDV 461
             +P + ++ +L+      G L+ ++ V  ++ E   PA    Y  L + Y ++ R D  
Sbjct: 669 GCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLA 728

Query: 462 EKVRGMM 468
            KV   M
Sbjct: 729 SKVLSKM 735



 Score = 68.6 bits (166), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 60/302 (19%), Positives = 125/302 (41%), Gaps = 25/302 (8%)

Query: 124 FAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAA 183
           F  M      PN  T+  L  +       + A  +   +L  G L +I  +++L+  +  
Sbjct: 541 FNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCK 600

Query: 184 SPRLFSLCR------------------QLFDEMTHR-DVVSWTVMIMGFRNAGKFDDALL 224
           + ++   C+                  + +D+ + R +VV++  ++ GF  + + ++A  
Sbjct: 601 AGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARK 660

Query: 225 AFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYA 284
             + M   G  PN++     +      G ++    +   +  +G+   +   ++LID Y 
Sbjct: 661 LLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYF 720

Query: 285 KCGRVEEGVRVFSSVKEK----NVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEV 340
           K  R +   +V S + E     NV  +  +I GL      +EA +L   ME+ G + + V
Sbjct: 721 KVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVV 780

Query: 341 TLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMR 400
           T  A++      G ++   ++   +  G  G  PN   Y  ++D   ++G+L  A  ++ 
Sbjct: 781 TYTAMIDGFGMIGKIETCLELLERM--GSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLE 838

Query: 401 CM 402
            M
Sbjct: 839 EM 840



 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 120/318 (37%), Gaps = 80/318 (25%)

Query: 95  RPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQ 154
           RP+V  + +L+  F  SH    +   L     M      PN   +  L   L       +
Sbjct: 636 RPNVVTYGALLDGFCKSHRVEEARKLLD---AMSMEGCEPNQIVYDALIDGLCKVGKLDE 692

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVY-------------------AASPRLF------- 188
           AQ V   + + G    +Y ++SL+  Y                   + +P +        
Sbjct: 693 AQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMID 752

Query: 189 SLCR-----------QLFDEM-THRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAP 236
            LC+           Q+ +E     +VV++T MI GF   GK +  L   E+M   GVAP
Sbjct: 753 GLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAP 812

Query: 237 NRVTMVNALAACADSGAVEMGAWIHDFIRRNGW----------------ELDVVLG---- 276
           N VT    +  C  +GA+++   + + +++  W                E    LG    
Sbjct: 813 NYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFIESLGLLDE 872

Query: 277 -----TA--------LIDMYAKCGRVE------EGVRVFSSVKEKNVFTWNAVIKGLALA 317
                TA        LID   K  R+E      E V  FS+       T+N++I+ L LA
Sbjct: 873 IGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLA 932

Query: 318 KSGEEAIRLFNRMEQDGV 335
              E A +LF+ M + GV
Sbjct: 933 NKVETAFQLFSEMTKKGV 950


>AT4G28010.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:13930379-13932493 FORWARD
           LENGTH=704
          Length = 704

 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/356 (23%), Positives = 148/356 (41%), Gaps = 19/356 (5%)

Query: 99  FIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSV 158
           F  N+L+     S +H       S +  M       N  +   L +          A  V
Sbjct: 73  FAGNNLMAKLVRSRNHE---LAFSFYRKMLETDTFINFVSLSGLLECYVQMRKTGFAFGV 129

Query: 159 HAHVLKLGHLHDIYVHNSLLGVYAAS---PRLFSLCRQLFDEMTHRDVVSWTVMIMGFRN 215
            A +LK G   ++Y HN LL     +    +  SL R++       DV S+  +I GF  
Sbjct: 130 LALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCE 189

Query: 216 AGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVL 275
             + + AL    +M+ +G + + VT    + A   +G ++        ++  G E D+V+
Sbjct: 190 GKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVV 249

Query: 276 GTALIDMYAKCGRVEEGVRVFSSVKEKN----VFTWNAVIKGLALAKSGEEAIRLFNRME 331
            T+LI  +  CG ++ G  +F  V E+       T+N +I+G       +EA  +F  M 
Sbjct: 250 YTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMI 309

Query: 332 QDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGS 391
           + GVR +  T   ++      G      Q+   ++E      PN   Y  +++ L + G 
Sbjct: 310 ERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEE--PNAVTYNIIINKLCKDGL 367

Query: 392 LREAFEVMRCMP---FDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAY 444
           + +A E++  M      P    +  LL    ++GDL+     A KL+ L   +S+Y
Sbjct: 368 VADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLD----EASKLLYLMLKDSSY 419



 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 149/359 (41%), Gaps = 27/359 (7%)

Query: 95  RPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQ 154
           RP+V+ +  LI           +L  L++          PN  T+  +   L      A 
Sbjct: 314 RPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEE---PNAVTYNIIINKLCKDGLVAD 370

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLF-----DEMTHRDVVSWTVM 209
           A  +   + K     D   +N LLG   A   L    + L+        T  DV+S+  +
Sbjct: 371 AVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNAL 430

Query: 210 IMGFRNAGKFDDALLAFEQMQYAGVAPNRVT---MVNALAACAD-SGAVEMGAWIHDF-I 264
           I G     +   AL  ++ +     A +RVT   ++N+     D + A+E+   I D  I
Sbjct: 431 IHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKI 490

Query: 265 RRNGWELDVVLGTALIDMYAKCG--RVEEGVRVFSSVKE--KNVFTWNAVIKGLALAKSG 320
            RN         TA+ID + K G   V +G+     V E   +VF +N ++  L    S 
Sbjct: 491 VRNSDTY-----TAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSL 545

Query: 321 EEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYA 380
           ++A RLF  M++D    D V+   ++     +G +     +   +   + G  P++  Y+
Sbjct: 546 DQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGM--SRAGLSPDLFTYS 603

Query: 381 CMVDLLARSGSLREA---FEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVE 436
            +++   + G L EA   F+ M    F+P   +  S+L    SQG+ +    + +KLV+
Sbjct: 604 KLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVLKYCISQGETDKLTELVKKLVD 662


>AT3G22470.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:7966066-7967925 REVERSE
           LENGTH=619
          Length = 619

 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 142/356 (39%), Gaps = 54/356 (15%)

Query: 116 NSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHN 175
           NS   L +F  M    I  +   +  +  SL     F  A S+   +   G   D+  ++
Sbjct: 225 NSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYS 284

Query: 176 SLLGVYAASPRLFSLCRQLFDEMTHR----DVVSWTVMIMGFRNAGKFDDALLAFEQMQY 231
           SL+G      + +    ++  EM  R    DVV+++ +I  F   GK  +A   + +M  
Sbjct: 285 SLIGGLCNDGK-WDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMIT 343

Query: 232 AGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEE 291
            G+AP+ +T  + +        +     + D +   G E D+V  + LI+ Y K  RV++
Sbjct: 344 RGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDD 403

Query: 292 GVRVFSSVKEK----NVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLS 347
           G+R+F  +  K    N  T+N ++ G   +     A  LF  M   GV    VT   +L 
Sbjct: 404 GMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLD 463

Query: 348 A-CNHSGL--------------VDMGRQIFGFLVEG------------------KYGFIP 374
             C++  L              + +G  I+  ++ G                    G  P
Sbjct: 464 GLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKP 523

Query: 375 NVKHYACMVDLLARSGSLREA---FEVMR---CMPFDPTKA------MWGSLLVSS 418
           +V  Y  M+  L + GSL EA   F  M+   C P D T        + GS L+SS
Sbjct: 524 DVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISS 579



 Score = 79.0 bits (193), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 121/269 (44%), Gaps = 13/269 (4%)

Query: 96  PHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQA 155
           P V  F++LI  F         L    ++  M    I P+  T+  L           +A
Sbjct: 313 PDVVTFSALIDVFVKEGKL---LEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEA 369

Query: 156 QSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHR----DVVSWTVMIM 211
             +   ++  G   DI  ++ L+  Y  + R+    R LF E++ +    + +++  +++
Sbjct: 370 NQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMR-LFREISSKGLIPNTITYNTLVL 428

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
           GF  +GK + A   F++M   GV P+ VT    L    D+G +     I + ++++   L
Sbjct: 429 GFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTL 488

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEK----NVFTWNAVIKGLALAKSGEEAIRLF 327
            + +   +I       +V++   +F S+ +K    +V T+N +I GL    S  EA  LF
Sbjct: 489 GIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLF 548

Query: 328 NRMEQDGVRADEVTLLAVLSA-CNHSGLV 355
            +M++DG   D+ T   ++ A    SGL+
Sbjct: 549 RKMKEDGCTPDDFTYNILIRAHLGGSGLI 577



 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 129/285 (45%), Gaps = 9/285 (3%)

Query: 121 LSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGV 180
           + +F  M ++  LP    F  L  +++    +         +   G  HD+Y    ++  
Sbjct: 55  IDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINC 114

Query: 181 YAASPRL---FSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPN 237
           Y    +L   FS+  + +      D ++++ ++ GF   G+  +A+   ++M      P+
Sbjct: 115 YCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPD 174

Query: 238 RVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFS 297
            VT+   +      G V     + D +   G++ D V    +++   K G     + +F 
Sbjct: 175 LVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFR 234

Query: 298 SVKEKN----VFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSG 353
            ++E+N    V  ++ VI  L    S ++A+ LFN ME  G++AD VT  +++    + G
Sbjct: 235 KMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDG 294

Query: 354 LVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEV 398
             D G ++   ++ G+   IP+V  ++ ++D+  + G L EA E+
Sbjct: 295 KWDDGAKMLREMI-GR-NIIPDVVTFSALIDVFVKEGKLLEAKEL 337



 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 95/221 (42%), Gaps = 18/221 (8%)

Query: 268 GWELDVVLGTALIDMYAKCGRVEEGV----RVFSSVKEKNVFTWNAVIKGLALAKSGEEA 323
           G+E D +  + L++ +   GRV E V    R+    +  ++ T + +I GL L     EA
Sbjct: 135 GYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEA 194

Query: 324 IRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMV 383
           + L +RM + G + DEVT   VL+    SG   +   +F  + E       +V  Y+ ++
Sbjct: 195 LVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEE--RNIKASVVQYSIVI 252

Query: 384 DLLARSGSLREAFEVMRCMPFDPTKA-------MWGSLLVSSK-SQGDLEFSEFVARKLV 435
           D L + GS  +A  +   M     KA       + G L    K   G     E + R ++
Sbjct: 253 DSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNII 312

Query: 436 ELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKD 476
                +   +  L +++ + G+  + +++   M  R +  D
Sbjct: 313 ----PDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPD 349


>AT1G64580.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23985078-23986649 REVERSE
           LENGTH=523
          Length = 523

 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 117/252 (46%), Gaps = 12/252 (4%)

Query: 96  PHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQA 155
           P+V  F +LI  F       N L   +++  M R +++PN +T+  L            A
Sbjct: 252 PNVIFFTALIDTFVK---EGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDA 308

Query: 156 QSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHR----DVVSWTVMIM 211
           + +   ++  G   D+  +N+L+  +  S R+     +LF EMT++    D  ++  +I 
Sbjct: 309 KYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVED-GMKLFCEMTYQGLVGDAFTYNTLIH 367

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
           G+  AGK + A   F +M   GV+P+ VT    L    ++G +E    + + ++++  ++
Sbjct: 368 GYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDV 427

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNV----FTWNAVIKGLALAKSGEEAIRLF 327
           D++    +I    +  +++E   +F S+  K V      +  +I GL       EA +L 
Sbjct: 428 DIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLC 487

Query: 328 NRMEQDGVRADE 339
            RM++DG    E
Sbjct: 488 RRMKEDGFMPSE 499



 Score = 82.0 bits (201), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 60/293 (20%), Positives = 133/293 (45%), Gaps = 14/293 (4%)

Query: 95  RPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQ 154
           R     +N+LI   S+S    ++     +   M +  I PN   F  L  +     +  +
Sbjct: 216 RADAVTYNTLISGLSNSGRWTDAA---RLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLE 272

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHR----DVVSWTVMI 210
           A++++  +++   + +++ +NSL+  +     L    + +FD M  +    DVV++  +I
Sbjct: 273 ARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGD-AKYMFDLMVSKGCFPDVVTYNTLI 331

Query: 211 MGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWE 270
            GF  + + +D +  F +M Y G+  +  T    +     +G + +   + + +   G  
Sbjct: 332 TGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVS 391

Query: 271 LDVVLGTALIDMYAKCGRVEEGVRVFSSVKEK----NVFTWNAVIKGLALAKSGEEAIRL 326
            D+V    L+D     G++E+ + +   +++     ++ T+N +I+GL      +EA  L
Sbjct: 392 PDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCL 451

Query: 327 FNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHY 379
           F  + + GV+ D +  + ++S     GL     ++   + E   GF+P+ + Y
Sbjct: 452 FRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKED--GFMPSERIY 502



 Score = 79.0 bits (193), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 83/364 (22%), Positives = 143/364 (39%), Gaps = 46/364 (12%)

Query: 95  RPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQ 154
           RP +    SL+  F   +    ++   S+   M     +PN   +  +   L        
Sbjct: 146 RPSIVTLGSLLNGFCQGNRFQEAV---SLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNN 202

Query: 155 AQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHR---DVVSWTVMIM 211
           A  V   + K G   D   +N+L+   + S R     R L D +  +   +V+ +T +I 
Sbjct: 203 ALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALID 262

Query: 212 GFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWEL 271
            F   G   +A   +++M    V PN  T  + +      G +    ++ D +   G   
Sbjct: 263 TFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFP 322

Query: 272 DVVLGTALIDMYAKCGRVEEGVRVFSSVKEK----NVFTWNAVIKGLALAKSGEEAIRLF 327
           DVV    LI  + K  RVE+G+++F  +  +    + FT+N +I G   A     A ++F
Sbjct: 323 DVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVF 382

Query: 328 NRMEQDGVRADEVTLLAVLSA-CNHSGL--------------VDMGRQIFGFLVEG---- 368
           NRM   GV  D VT   +L   CN+  +              +D+    +  +++G    
Sbjct: 383 NRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRT 442

Query: 369 --------------KYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFD---PTKAMW 411
                         + G  P+   Y  M+  L R G  REA ++ R M  D   P++ ++
Sbjct: 443 DKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFMPSERIY 502

Query: 412 GSLL 415
              L
Sbjct: 503 DETL 506



 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 80/385 (20%), Positives = 145/385 (37%), Gaps = 94/385 (24%)

Query: 103 SLIRAFSHSHHHH-------NSL------TPLSIFAHMHRNTILPNHYTFPFLFKSLSAP 149
           SL R+FS + HHH       N L         S+F  M ++  +P+   F  +   ++  
Sbjct: 33  SLSRSFSGASHHHHYRERLRNELHCIKFDDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKM 92

Query: 150 CHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMT---HRDVVSW 206
             F     ++  +  LG  HD+Y    L+  +    RL      L   M       +V+ 
Sbjct: 93  NKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTL 152

Query: 207 TVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRV---TMVNALAACAD------------- 250
             ++ GF    +F +A+   + M   G  PN V   T++N L    D             
Sbjct: 153 GSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEK 212

Query: 251 --------------SGAVEMGAW------IHDFIRRNGWELDVVLGTALIDMYAKCGRVE 290
                         SG    G W      + D ++R   + +V+  TALID + K G + 
Sbjct: 213 KGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRK-IDPNVIFFTALIDTFVKEGNLL 271

Query: 291 EGVRVFSSVKEK----NVFTWNAVIKGLAL------------------------------ 316
           E   ++  +  +    NVFT+N++I G  +                              
Sbjct: 272 EARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLI 331

Query: 317 -----AKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYG 371
                +K  E+ ++LF  M   G+  D  T   ++     +G +++ +++F  +V+   G
Sbjct: 332 TGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDC--G 389

Query: 372 FIPNVKHYACMVDLLARSGSLREAF 396
             P++  Y  ++D L  +G + +A 
Sbjct: 390 VSPDIVTYNILLDCLCNNGKIEKAL 414


>AT3G16010.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr3:5434142-5436244 FORWARD
           LENGTH=642
          Length = 642

 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/325 (22%), Positives = 134/325 (41%), Gaps = 45/325 (13%)

Query: 121 LSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLL-- 178
           L +F  M R    P  YT+  L K L       +A   +  +L+ G   D+   N+L+  
Sbjct: 288 LDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNI 347

Query: 179 -----------------GVYAASPRLFS---LCRQLFDEMTH-RDVVSW----------- 206
                            G++  +P + S   + + LF+   H  +V SW           
Sbjct: 348 LGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSP 407

Query: 207 -----TVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIH 261
                +++I G+    + + ALL  E+M   G  P      + + A   +   E    + 
Sbjct: 408 SEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELF 467

Query: 262 DFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEK----NVFTWNAVIKGLALA 317
             ++ N   +   +   +I  + KCG++ E V +F+ +K +    +V+ +NA++ G+  A
Sbjct: 468 KELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKA 527

Query: 318 KSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVK 377
               EA  L  +ME++G RAD  +   +L+    +G+     ++F  +     G  P+  
Sbjct: 528 GMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHS--GIKPDGV 585

Query: 378 HYACMVDLLARSGSLREAFEVMRCM 402
            Y  ++   A +G   EA  +MR M
Sbjct: 586 TYNTLLGCFAHAGMFEEAARMMREM 610



 Score = 75.1 bits (183), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 128/311 (41%), Gaps = 16/311 (5%)

Query: 100 IFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVH 159
           + + L++A   +     +L   S+F         P   T+  +   L       +   V+
Sbjct: 164 VLSELVKALGRAKMVSKAL---SVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVY 220

Query: 160 AHVLKLGH-LHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVS----WTVMIMGFR 214
             +   G    D   +++L+  Y    R  S  R LFDEM    +      +T ++  + 
Sbjct: 221 TEMCNEGDCFPDTITYSALISSYEKLGRNDSAIR-LFDEMKDNCMQPTEKIYTTLLGIYF 279

Query: 215 NAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVV 274
             GK + AL  FE+M+ AG +P   T    +     +G V+     +  + R+G   DVV
Sbjct: 280 KVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVV 339

Query: 275 LGTALIDMYAKCGRVEEGVRVFSSVK----EKNVFTWNAVIKGLALAKSG-EEAIRLFNR 329
               L+++  K GRVEE   VFS +        V ++N VIK L  +K+   E    F++
Sbjct: 340 FLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDK 399

Query: 330 MEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARS 389
           M+ D V   E T   ++     +  V+    +   + E   GF P    Y  +++ L ++
Sbjct: 400 MKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEK--GFPPCPAAYCSLINALGKA 457

Query: 390 GSLREAFEVMR 400
                A E+ +
Sbjct: 458 KRYEAANELFK 468



 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/267 (22%), Positives = 115/267 (43%), Gaps = 17/267 (6%)

Query: 96  PHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQA 155
           P V  +N++I+A   S  H + ++  S F  M  +++ P+ +T+  L           +A
Sbjct: 371 PTVVSYNTVIKALFESKAHVSEVS--SWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKA 428

Query: 156 QSVHAHVLKLGHLHDIYVHNSLLGV------YAASPRLFSLCRQLFDEMTHRDVVSWTVM 209
             +   + + G       + SL+        Y A+  LF   ++ F  ++ R    + VM
Sbjct: 429 LLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSR---VYAVM 485

Query: 210 IMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNAL-AACADSGAVEMGAWIHDFIRRNG 268
           I  F   GK  +A+  F +M+  G  P+ V   NAL +    +G +     +   +  NG
Sbjct: 486 IKHFGKCGKLSEAVDLFNEMKNQGSGPD-VYAYNALMSGMVKAGMINEANSLLRKMEENG 544

Query: 269 WELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNV----FTWNAVIKGLALAKSGEEAI 324
              D+     +++ +A+ G     + +F ++K   +     T+N ++   A A   EEA 
Sbjct: 545 CRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAA 604

Query: 325 RLFNRMEQDGVRADEVTLLAVLSACNH 351
           R+   M+  G   D +T  ++L A  +
Sbjct: 605 RMMREMKDKGFEYDAITYSSILDAVGN 631


>AT3G13150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:4227975-4229630 REVERSE
           LENGTH=551
          Length = 551

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 109/215 (50%), Gaps = 11/215 (5%)

Query: 193 QLFDEMTH----RDVVSWTVMIMGFRNAGKFDDALLAFEQM-QYAGVAPNRVTMVNALAA 247
           +LFDEM      R V S+  ++  + N+ K D+A+  F+++ +  G+ P+ VT    + A
Sbjct: 143 KLFDEMPELNCERTVKSFNALLSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMIKA 202

Query: 248 CADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEK----N 303
               G+++    I + + +NG+E D++    L++ + +     EG R++  +K K    N
Sbjct: 203 LCRKGSMDDILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEGDRIWDLMKSKNLSPN 262

Query: 304 VFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFG 363
           + ++N+ ++GL   K   +A+ L + M+ +G+  D  T  A+++A      ++   + + 
Sbjct: 263 IRSYNSRVRGLTRNKKFTDALNLIDVMKTEGISPDVHTYNALITAYRVDNNLEEVMKCYN 322

Query: 364 FLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEV 398
            + E   G  P+   Y  ++ LL + G L  A EV
Sbjct: 323 EMKEK--GLTPDTVTYCMLIPLLCKKGDLDRAVEV 355