Miyakogusa Predicted Gene
- Lj0g3v0238669.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0238669.1 Non Chatacterized Hit- tr|I1JDA2|I1JDA2_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,31.66,2e-18,RNA-binding domain, RBD,NULL; RRM,RNA recognition
motif domain; coiled-coil,NULL; seg,NULL; no descr,CUFF.15707.1
(359 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro... 489 e-138
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1... 468 e-132
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |... 468 e-132
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |... 425 e-119
AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8... 400 e-112
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 399 e-111
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 399 e-111
AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:1... 293 1e-79
AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 | chr1:1... 281 7e-76
AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 | chr3:5... 266 2e-71
AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs... 117 1e-26
AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A... 110 1e-24
AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A... 106 2e-23
AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 105 4e-23
AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45... 102 3e-22
AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B... 100 2e-21
AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 99 4e-21
AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47... 97 1e-20
AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B... 97 1e-20
AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motif... 94 1e-19
AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47... 94 2e-19
AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 93 3e-19
AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 93 3e-19
AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 92 4e-19
AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein ... 89 4e-18
AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 87 1e-17
AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 80 2e-15
AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 80 2e-15
AT2G16940.1 | Symbols: | Splicing factor, CC1-like | chr2:73428... 78 8e-15
AT2G16940.2 | Symbols: | Splicing factor, CC1-like | chr2:73428... 78 1e-14
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 77 1e-14
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 76 3e-14
AT5G41690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 76 4e-14
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 75 6e-14
AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 75 8e-14
AT1G45100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 75 8e-14
AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 75 9e-14
AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 74 2e-13
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 73 2e-13
AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 71 9e-13
AT2G16940.3 | Symbols: | Splicing factor, CC1-like | chr2:73428... 71 1e-12
AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 71 1e-12
AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 71 1e-12
AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 70 3e-12
AT1G32790.1 | Symbols: CID11 | CTC-interacting domain 11 | chr1:... 70 3e-12
AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |... 69 4e-12
AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |... 69 4e-12
AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding | ch... 69 5e-12
AT4G10610.1 | Symbols: RBP37, ATRBP37, CID12 | CTC-interacting d... 68 9e-12
AT1G32790.2 | Symbols: CID11 | CTC-interacting domain 11 | chr1:... 68 1e-11
AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 1e-11
AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 1e-11
AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 66 4e-11
AT4G10610.2 | Symbols: RBP37, ATRBP37 | CTC-interacting domain 1... 65 7e-11
AT2G44710.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 1e-10
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 63 3e-10
AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 63 3e-10
AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 63 3e-10
AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 63 4e-10
AT5G24440.1 | Symbols: CID13 | CTC-interacting domain 13 | chr5:... 62 4e-10
AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 7e-10
AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 7e-10
AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 9e-10
AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 9e-10
AT5G09880.1 | Symbols: | Splicing factor, CC1-like | chr5:30816... 61 1e-09
AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 1e-09
AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 1e-09
AT3G49390.2 | Symbols: CID10 | CTC-interacting domain 10 | chr3:... 60 2e-09
AT3G49390.1 | Symbols: CID10 | CTC-interacting domain 10 | chr3:... 60 2e-09
AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 2e-09
AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 2e-09
AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 60 3e-09
AT4G12640.1 | Symbols: | RNA recognition motif (RRM)-containing... 59 5e-09
AT3G18610.1 | Symbols: PARLL1, ATNUC-L2, NUC-L2 | nucleolin like... 59 5e-09
AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 6e-09
AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 6e-09
AT5G07290.1 | Symbols: AML4, ML4 | MEI2-like 4 | chr5:2294248-22... 59 7e-09
AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 7e-09
AT3G10845.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 7e-09
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 58 9e-09
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 58 9e-09
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-... 58 9e-09
AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 9e-09
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 58 1e-08
AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 1e-08
AT3G14450.1 | Symbols: CID9 | CTC-interacting domain 9 | chr3:48... 57 1e-08
AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29... 57 2e-08
AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 | ch... 57 2e-08
AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29... 57 2e-08
AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29... 57 2e-08
AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29... 57 2e-08
AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid bindin... 57 3e-08
AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 4e-08
AT2G47310.1 | Symbols: | flowering time control protein-related... 55 5e-08
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 55 5e-08
AT1G53650.1 | Symbols: CID8 | CTC-interacting domain 8 | chr1:20... 55 6e-08
AT1G53650.2 | Symbols: CID8 | CTC-interacting domain 8 | chr1:20... 55 7e-08
AT5G03580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 8e-08
AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 8e-08
AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 8e-08
AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 8e-08
AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 54 2e-07
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 54 2e-07
AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 | chr5:1920... 54 2e-07
AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 54 2e-07
AT5G51300.3 | Symbols: | splicing factor-related | chr5:2084988... 53 3e-07
AT5G51300.2 | Symbols: | splicing factor-related | chr5:2084988... 53 3e-07
AT5G51300.1 | Symbols: | splicing factor-related | chr5:2084988... 53 3e-07
AT1G53720.1 | Symbols: ATCYP59, CYP59 | cyclophilin 59 | chr1:20... 53 3e-07
AT3G10400.1 | Symbols: | RNA recognition motif and CCHC-type zi... 53 4e-07
AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation... 53 4e-07
AT3G11400.1 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation... 52 4e-07
AT5G19030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 5e-07
AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like ... 52 6e-07
AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 8e-07
AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 8e-07
AT1G13690.1 | Symbols: ATE1 | ATPase E1 | chr1:4693380-4694179 F... 51 1e-06
AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 1e-06
AT4G03110.2 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 51 1e-06
AT2G46610.1 | Symbols: RS31a, At-RS31a | RNA-binding (RRM/RBD/RN... 51 1e-06
AT5G64200.2 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human... 50 2e-06
AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human... 50 2e-06
AT2G21690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, an... 50 2e-06
AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold, circa... 50 2e-06
AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 3e-06
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 50 3e-06
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 50 3e-06
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 50 3e-06
AT5G19030.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 3e-06
AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 3e-06
AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 3e-06
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Length = 629
Score = 489 bits (1258), Expect = e-138, Method: Compositional matrix adjust.
Identities = 227/340 (66%), Positives = 277/340 (81%), Gaps = 1/340 (0%)
Query: 20 TSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD 79
TSLYVGDLD + DSQL+D F Q+G VV+VRVCRDL T++SLGYGYVNFTNP+DAA A+
Sbjct: 36 TSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQ 95
Query: 80 VLNFTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKI 139
LN+ PL GKPIR+MYSHRDPSVR+SGA NIF+KNLD+SIDHKAL+DTF FGNI++CK+
Sbjct: 96 ELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKV 155
Query: 140 ATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALGGGKF 199
A D SGQSKGYGFVQ+ NEESAQ AI+ NG L+ DK+VYV F R+Q+R++ A KF
Sbjct: 156 AVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTA-NKTKF 214
Query: 200 NNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFVNFENADEAAKAVDA 259
NVYVKNL+E+ TDDDLK F EYG ITSAVVM+D +GKSK FGFVNFENAD+AA+AV++
Sbjct: 215 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVES 274
Query: 260 LNGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEKL 319
LNG KFDDKEWYVG ++EQ+++E DK+Q +NLY+KNLD ++ DEKL
Sbjct: 275 LNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKL 334
Query: 320 RELFSEFGTITSCKIMRDPHGVSRGSGFVAFSTPEEATRA 359
+E+FS FGT+TS K+MRDP+G S+GSGFVAF+TPEEAT A
Sbjct: 335 KEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEA 374
Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 102/266 (38%), Positives = 153/266 (57%), Gaps = 16/266 (6%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
+++ +LD I+ L+D F+ G +VS +V D ++ QS GYG+V + N + A A++ L
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKL 184
Query: 82 NFTPLNGKPIRI----MYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTC 137
N LN K + + RD + K+ N++VKNL +S L + F +G I +
Sbjct: 185 NGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSA 244
Query: 138 KIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRE------- 190
+ DG G+SKG+GFV FEN + A A+++ NG DKE YV Q+K +RE
Sbjct: 245 VVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRY 304
Query: 191 --NAALGGGKF--NNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFVN 246
N KF +N+YVKNL +++D+ LK+IFS +GT+TS+ VMRD +G SK GFV
Sbjct: 305 EQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVA 364
Query: 247 FENADEAAKAVDALNGKKFDDKEWYV 272
F +EA +A+ L+GK + K YV
Sbjct: 365 FATPEEATEAMSQLSGKMIESKPLYV 390
Score = 141 bits (355), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 131/255 (51%), Gaps = 18/255 (7%)
Query: 106 GAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNA 164
G +++V +LD ++ L+D F G ++T ++ D + +S GYG+V F N + A A
Sbjct: 34 GNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARA 93
Query: 165 IDNFNGKLIGDKEVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYG 224
I N + K + V + R + G N+++KNL E++ L FS +G
Sbjct: 94 IQELNYIPLYGKPIRVMYSHRDPSVRRSGAG-----NIFIKNLDESIDHKALHDTFSSFG 148
Query: 225 TITSAVVMRDVDGKSKCFGFVNFENADEAAKAVDALNGKKFDDKEWYVGXXXXXXXXXXX 284
I S V D G+SK +GFV + N + A KA++ LNG +DK+ YVG
Sbjct: 149 NIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFL-------- 200
Query: 285 XXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEKLRELFSEFGTITSCKIMRDPHGVSRG 344
Q T +K + N+Y+KNL ++ D+ L+ F E+G ITS +M+D G S+G
Sbjct: 201 ----RRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKG 256
Query: 345 SGFVAFSTPEEATRA 359
GFV F ++A RA
Sbjct: 257 FGFVNFENADDAARA 271
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 101/192 (52%), Gaps = 17/192 (8%)
Query: 14 ANQPMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKD 73
AN+ T++YV +L D L + F + G++ S V +D +S G+G+VNF N D
Sbjct: 209 ANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFENADD 267
Query: 74 AATALDVLNFTPLNGKPIRI----MYSHRDPSVR------------KSGAANIFVKNLDK 117
AA A++ LN + K + S R+ +R K ++N++VKNLD
Sbjct: 268 AARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDP 327
Query: 118 SIDHKALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKE 177
SI + L + F FG + + K+ D +G SKG GFV F E A A+ +GK+I K
Sbjct: 328 SISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKP 387
Query: 178 VYVSHFQRKQDR 189
+YV+ QRK+DR
Sbjct: 388 LYVAIAQRKEDR 399
>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 468 bits (1203), Expect = e-132, Method: Compositional matrix adjust.
Identities = 220/340 (64%), Positives = 269/340 (79%), Gaps = 1/340 (0%)
Query: 20 TSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD 79
TSLYVGDLD + DSQL++ F Q GQVVSVRVCRD+ T++SLGYGYVN+ P+DA+ AL+
Sbjct: 45 TSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104
Query: 80 VLNFTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKI 139
LNF LNG+ IR+MYS RDPS+RKSG NIF+KNLDKSIDHKAL++TF FG IL+CK+
Sbjct: 105 ELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKV 164
Query: 140 ATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALGGGKF 199
A D SGQSKGYGFVQ++ +E+AQ AID NG L+ DK+VYV F K R+ + KF
Sbjct: 165 AVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSG-EKVKF 223
Query: 200 NNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFVNFENADEAAKAVDA 259
NVYVKNLSE+++D++L K+F E+G TS V+MRD +GKSK FGFVNFEN+D+AA+AVDA
Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDA 283
Query: 260 LNGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEKL 319
LNGK FDDKEW+VG + EQS++E DK QG+NLY+KNLD++V D+KL
Sbjct: 284 LNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKL 343
Query: 320 RELFSEFGTITSCKIMRDPHGVSRGSGFVAFSTPEEATRA 359
RE F+ FGTITSCK+MRDP GVSRGSGFVAFSTPEEATRA
Sbjct: 344 REHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRA 383
Score = 178 bits (452), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 104/266 (39%), Positives = 150/266 (56%), Gaps = 16/266 (6%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
+++ +LD I+ L++ F+ G ++S +V D + QS GYG+V + + A A+D L
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVD-PSGQSKGYGFVQYDTDEAAQGAIDKL 193
Query: 82 NFTPLNGKPIRI-MYSH---RDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTC 137
N LN K + + + H RDPS K N++VKNL +S+ + L F FG +C
Sbjct: 194 NGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSC 253
Query: 138 KIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENA----- 192
I DG G+SKG+GFV FEN + A A+D NGK DKE +V Q+K +RE
Sbjct: 254 VIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKF 313
Query: 193 ------ALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFVN 246
A + +N+YVKNL E++TDD L++ F+ +GTITS VMRD G S+ GFV
Sbjct: 314 EQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVA 373
Query: 247 FENADEAAKAVDALNGKKFDDKEWYV 272
F +EA +A+ +NGK K YV
Sbjct: 374 FSTPEEATRAITEMNGKMIVTKPLYV 399
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 101/187 (54%), Gaps = 17/187 (9%)
Query: 20 TSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD 79
T++YV +L ++D +L +F + G S + RD +S G+G+VNF N DAA A+D
Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNFENSDDAARAVD 282
Query: 80 VLNFTPLNGKPIRI----MYSHRDPSVR------------KSGAANIFVKNLDKSIDHKA 123
LN + K + S R+ ++ KS +N++VKNLD+S+
Sbjct: 283 ALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDK 342
Query: 124 LYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHF 183
L + F FG I +CK+ D SG S+G GFV F E A AI NGK+I K +YV+
Sbjct: 343 LREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALA 402
Query: 184 QRKQDRE 190
QRK+DR+
Sbjct: 403 QRKEDRK 409
>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 468 bits (1203), Expect = e-132, Method: Compositional matrix adjust.
Identities = 220/340 (64%), Positives = 269/340 (79%), Gaps = 1/340 (0%)
Query: 20 TSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD 79
TSLYVGDLD + DSQL++ F Q GQVVSVRVCRD+ T++SLGYGYVN+ P+DA+ AL+
Sbjct: 45 TSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104
Query: 80 VLNFTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKI 139
LNF LNG+ IR+MYS RDPS+RKSG NIF+KNLDKSIDHKAL++TF FG IL+CK+
Sbjct: 105 ELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKV 164
Query: 140 ATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALGGGKF 199
A D SGQSKGYGFVQ++ +E+AQ AID NG L+ DK+VYV F K R+ + KF
Sbjct: 165 AVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSG-EKVKF 223
Query: 200 NNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFVNFENADEAAKAVDA 259
NVYVKNLSE+++D++L K+F E+G TS V+MRD +GKSK FGFVNFEN+D+AA+AVDA
Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDA 283
Query: 260 LNGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEKL 319
LNGK FDDKEW+VG + EQS++E DK QG+NLY+KNLD++V D+KL
Sbjct: 284 LNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKL 343
Query: 320 RELFSEFGTITSCKIMRDPHGVSRGSGFVAFSTPEEATRA 359
RE F+ FGTITSCK+MRDP GVSRGSGFVAFSTPEEATRA
Sbjct: 344 REHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRA 383
Score = 178 bits (452), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 104/266 (39%), Positives = 150/266 (56%), Gaps = 16/266 (6%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
+++ +LD I+ L++ F+ G ++S +V D + QS GYG+V + + A A+D L
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVD-PSGQSKGYGFVQYDTDEAAQGAIDKL 193
Query: 82 NFTPLNGKPIRI-MYSH---RDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTC 137
N LN K + + + H RDPS K N++VKNL +S+ + L F FG +C
Sbjct: 194 NGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSC 253
Query: 138 KIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENA----- 192
I DG G+SKG+GFV FEN + A A+D NGK DKE +V Q+K +RE
Sbjct: 254 VIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKF 313
Query: 193 ------ALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFVN 246
A + +N+YVKNL E++TDD L++ F+ +GTITS VMRD G S+ GFV
Sbjct: 314 EQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVA 373
Query: 247 FENADEAAKAVDALNGKKFDDKEWYV 272
F +EA +A+ +NGK K YV
Sbjct: 374 FSTPEEATRAITEMNGKMIVTKPLYV 399
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 101/187 (54%), Gaps = 17/187 (9%)
Query: 20 TSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD 79
T++YV +L ++D +L +F + G S + RD +S G+G+VNF N DAA A+D
Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNFENSDDAARAVD 282
Query: 80 VLNFTPLNGKPIRI----MYSHRDPSVR------------KSGAANIFVKNLDKSIDHKA 123
LN + K + S R+ ++ KS +N++VKNLD+S+
Sbjct: 283 ALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDK 342
Query: 124 LYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHF 183
L + F FG I +CK+ D SG S+G GFV F E A AI NGK+I K +YV+
Sbjct: 343 LREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALA 402
Query: 184 QRKQDRE 190
QRK+DR+
Sbjct: 403 QRKEDRK 409
>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
chr2:9943209-9946041 FORWARD LENGTH=662
Length = 662
Score = 425 bits (1092), Expect = e-119, Method: Compositional matrix adjust.
Identities = 212/338 (62%), Positives = 261/338 (77%), Gaps = 1/338 (0%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDV 80
SLYVGDLD + DSQLYD F ++ QVVSVRVCRD AT SLGYGYVN++N DA A+
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 81 LNFTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIA 140
LN++ LNGK IRI YS RD S R+SG N+FVKNLDKS+D+K L++ F G I++CK+A
Sbjct: 107 LNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVA 166
Query: 141 TDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALGGGKFN 200
TD GQS+GYGFVQF+ E+SA+NAI+ NGK++ DK+++V F RK++RE+AA KF
Sbjct: 167 TDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAA-DKMKFT 225
Query: 201 NVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFVNFENADEAAKAVDAL 260
NVYVKNLSEA TDD+LK F +YG+I+SAVVMRD DGKS+CFGFVNFEN ++AA+AV+AL
Sbjct: 226 NVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEAL 285
Query: 261 NGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEKLR 320
NGKKFDDKEWYVG ++EQ + +K+ G NLY+KNLDD V DEKLR
Sbjct: 286 NGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLR 345
Query: 321 ELFSEFGTITSCKIMRDPHGVSRGSGFVAFSTPEEATR 358
ELF+EFGTITSCK+MRDP G S+GSGFVAFS EA+R
Sbjct: 346 ELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASR 383
Score = 172 bits (436), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 103/266 (38%), Positives = 151/266 (56%), Gaps = 16/266 (6%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
L+V +LD +++ L++ F+ G +VS +V D QS GYG+V F A A++ L
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATD-HMGQSRGYGFVQFDTEDSAKNAIEKL 194
Query: 82 NFTPLNGKPIRI----MYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTC 137
N LN K I + R+ + K N++VKNL ++ L TF +G+I +
Sbjct: 195 NGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSA 254
Query: 138 KIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRE------- 190
+ DG G+S+ +GFV FEN E A A++ NGK DKE YV Q+K +RE
Sbjct: 255 VVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRY 314
Query: 191 --NAALGGGKFN--NVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFVN 246
++ GG KF+ N+YVKNL + +TD+ L+++F+E+GTITS VMRD G SK GFV
Sbjct: 315 EQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVA 374
Query: 247 FENADEAAKAVDALNGKKFDDKEWYV 272
F A EA++ ++ +NGK K YV
Sbjct: 375 FSAASEASRVLNEMNGKMVGGKPLYV 400
Score = 136 bits (342), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 135/253 (53%), Gaps = 18/253 (7%)
Query: 108 ANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAID 166
+++V +LD ++ LYD F +++ ++ D + S GYG+V + N + A+ A+
Sbjct: 46 CSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQ 105
Query: 167 NFNGKLIGDKEVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTI 226
N + K + +++ R + +G N++VKNL +++ + L + FS GTI
Sbjct: 106 KLNYSYLNGKMIRITYSSRDSSARRSGVG-----NLFVKNLDKSVDNKTLHEAFSGCGTI 160
Query: 227 TSAVVMRDVDGKSKCFGFVNFENADEAAKAVDALNGKKFDDKEWYVGXXXXXXXXXXXXX 286
S V D G+S+ +GFV F+ D A A++ LNGK +DK+ +VG
Sbjct: 161 VSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFL---------- 210
Query: 287 XQHEQSMQETVDKYQGANLYLKNLDDNVDDEKLRELFSEFGTITSCKIMRDPHGVSRGSG 346
++ + DK + N+Y+KNL + D++L+ F ++G+I+S +MRD G SR G
Sbjct: 211 --RKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFG 268
Query: 347 FVAFSTPEEATRA 359
FV F PE+A RA
Sbjct: 269 FVNFENPEDAARA 281
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 99/187 (52%), Gaps = 17/187 (9%)
Query: 20 TSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD 79
T++YV +L D +L F Q G + S V RD +S +G+VNF NP+DAA A++
Sbjct: 225 TNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRD-GDGKSRCFGFVNFENPEDAARAVE 283
Query: 80 VLNFTPLNGKPIRI----MYSHRDPSVRK---SGAA---------NIFVKNLDKSIDHKA 123
LN + K + S R+ + + G++ N++VKNLD ++ +
Sbjct: 284 ALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEK 343
Query: 124 LYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHF 183
L + F FG I +CK+ D SG SKG GFV F A ++ NGK++G K +YV+
Sbjct: 344 LRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALA 403
Query: 184 QRKQDRE 190
QRK++R
Sbjct: 404 QRKEERR 410
>AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 |
chr1:8055599-8058799 FORWARD LENGTH=660
Length = 660
Score = 400 bits (1027), Expect = e-112, Method: Compositional matrix adjust.
Identities = 196/350 (56%), Positives = 250/350 (71%), Gaps = 7/350 (2%)
Query: 14 ANQPMP-TSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPK 72
A+Q P +SLY GDLD ++ ++ L+DLF + VVSVRVCRD ++SLGY Y+NF+NP
Sbjct: 42 ADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPN 100
Query: 73 DAATALDVLNFTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFG 132
DA A++ LN+TPL +PIRIM S+RDPS R SG NIF+KNLD SID+KAL++TF FG
Sbjct: 101 DAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFG 160
Query: 133 NILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDR--- 189
IL+CK+A D +G+SKGYGFVQFE EESAQ AID NG L+ DK+V+V HF R+Q+R
Sbjct: 161 TILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARD 220
Query: 190 ENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFVNFEN 249
EN +F NVYVKNL + + +D+L+K F ++G I+SAVVMRD G S+CFGFVNFE
Sbjct: 221 ENTPT--PRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFEC 278
Query: 250 ADEAAKAVDALNGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGANLYLKN 309
+ AA AV+ +NG D YVG + EQ +K QGANLYLKN
Sbjct: 279 TEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKN 338
Query: 310 LDDNVDDEKLRELFSEFGTITSCKIMRDPHGVSRGSGFVAFSTPEEATRA 359
LDD+VDDEKL+E+FSE+G +TS K+M +P G+SRG GFVA+S PEEA RA
Sbjct: 339 LDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRA 388
Score = 161 bits (408), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 96/271 (35%), Positives = 147/271 (54%), Gaps = 22/271 (8%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
+++ +LD I++ L++ F+ G ++S +V D+ T +S GYG+V F + A A+D L
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 82 NFTPLN------GKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNIL 135
N +N G IR RD + N++VKNL K I L TF FG I
Sbjct: 197 NGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVIS 256
Query: 136 TCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALG 195
+ + D SG S+ +GFV FE E+A +A++ NG +GD +YV Q+K +RE
Sbjct: 257 SAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRR 316
Query: 196 GGKFN-------------NVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCF 242
KF N+Y+KNL +++ D+ LK++FSEYG +TS+ VM + G S+ F
Sbjct: 317 --KFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGF 374
Query: 243 GFVNFENADEAAKAVDALNGKKFDDKEWYVG 273
GFV + N +EA +A+ +NGK K Y+
Sbjct: 375 GFVAYSNPEEALRALSEMNGKMIGRKPLYIA 405
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 109/201 (54%), Gaps = 25/201 (12%)
Query: 11 AQEANQPMP--TSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNF 68
A++ N P P T++YV +L EI + +L F + G + S V RD + S +G+VNF
Sbjct: 218 ARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRD-QSGNSRCFGFVNF 276
Query: 69 TNPKDAATALDVLNFTPLNGKPIRIMY-------SHRDPSVR------------KSGAAN 109
+ AA+A++ +N L ++Y S R+ +R KS AN
Sbjct: 277 ECTEAAASAVEKMNGISLGDD---VLYVGRAQKKSEREEELRRKFEQERINRFEKSQGAN 333
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFN 169
+++KNLD S+D + L + F +GN+ + K+ + G S+G+GFV + N E A A+ N
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMN 393
Query: 170 GKLIGDKEVYVSHFQRKQDRE 190
GK+IG K +Y++ QRK+DR
Sbjct: 394 GKMIGRKPLYIALAQRKEDRR 414
>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 399 bits (1026), Expect = e-111, Method: Compositional matrix adjust.
Identities = 192/341 (56%), Positives = 245/341 (71%), Gaps = 2/341 (0%)
Query: 20 TSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD 79
+SLYVGDLD +N+S L DLFNQ+ V ++RVCRDL T +SLGY YVNF NP+DA+ A++
Sbjct: 59 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAME 117
Query: 80 VLNFTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKI 139
LN+ P+ +PIRIM S+RDPS R SG N+F+KNLD SID+KALY+TF FG IL+CK+
Sbjct: 118 SLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKV 177
Query: 140 ATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALGG-GK 198
A D G+SKGYGFVQFE EE+AQ AID NG L+ DK+V+V HF R+QDR + G
Sbjct: 178 AMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPS 237
Query: 199 FNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFVNFENADEAAKAVD 258
F NVYVKNL + +TDD+LKK F +YG I+SAVVM+D G S+ FGFVNF + + AA AV+
Sbjct: 238 FTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVE 297
Query: 259 ALNGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEK 318
+NG + YVG + EQ +K QG+NLYLKNLDD+V+DEK
Sbjct: 298 KMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEK 357
Query: 319 LRELFSEFGTITSCKIMRDPHGVSRGSGFVAFSTPEEATRA 359
L+E+FSE+G +TSCK+M + G+SRG GFVA+S PEEA A
Sbjct: 358 LKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLA 398
Score = 157 bits (398), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 96/271 (35%), Positives = 150/271 (55%), Gaps = 22/271 (8%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
+++ +LD I++ LY+ F+ G ++S +V D+ + S GYG+V F + A A+D L
Sbjct: 148 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGR-SKGYGFVQFEKEETAQAAIDKL 206
Query: 82 NFTPLNGKPIRIMY--SHRDPSVRKSGAA----NIFVKNLDKSIDHKALYDTFLVFGNIL 135
N LN K + + + +D + +SGA N++VKNL K I L TF +G+I
Sbjct: 207 NGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDIS 266
Query: 136 TCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALG 195
+ + D SG S+ +GFV F + E+A A++ NG +G+ +YV Q+K DRE
Sbjct: 267 SAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRR 326
Query: 196 GGKF-------------NNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCF 242
KF +N+Y+KNL +++ D+ LK++FSEYG +TS VM + G S+ F
Sbjct: 327 --KFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGF 384
Query: 243 GFVNFENADEAAKAVDALNGKKFDDKEWYVG 273
GFV + N +EA A+ +NGK K YV
Sbjct: 385 GFVAYSNPEEALLAMKEMNGKMIGRKPLYVA 415
Score = 107 bits (268), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 105/190 (55%), Gaps = 23/190 (12%)
Query: 20 TSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD 79
T++YV +L EI D +L F + G + S V +D + S +G+VNF +P+ AA A++
Sbjct: 239 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGFVNFVSPEAAAVAVE 297
Query: 80 VLNFTPLNGKPIRIMY-------SHRDPSVR------------KSGAANIFVKNLDKSID 120
+N L ++Y S R+ +R K +N+++KNLD S++
Sbjct: 298 KMNGISLGED---VLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVN 354
Query: 121 HKALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYV 180
+ L + F +GN+ +CK+ + G S+G+GFV + N E A A+ NGK+IG K +YV
Sbjct: 355 DEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYV 414
Query: 181 SHFQRKQDRE 190
+ QRK++R+
Sbjct: 415 ALAQRKEERQ 424
>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 399 bits (1026), Expect = e-111, Method: Compositional matrix adjust.
Identities = 192/341 (56%), Positives = 245/341 (71%), Gaps = 2/341 (0%)
Query: 20 TSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD 79
+SLYVGDLD +N+S L DLFNQ+ V ++RVCRDL T +SLGY YVNF NP+DA+ A++
Sbjct: 59 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAME 117
Query: 80 VLNFTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKI 139
LN+ P+ +PIRIM S+RDPS R SG N+F+KNLD SID+KALY+TF FG IL+CK+
Sbjct: 118 SLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKV 177
Query: 140 ATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALGG-GK 198
A D G+SKGYGFVQFE EE+AQ AID NG L+ DK+V+V HF R+QDR + G
Sbjct: 178 AMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPS 237
Query: 199 FNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFVNFENADEAAKAVD 258
F NVYVKNL + +TDD+LKK F +YG I+SAVVM+D G S+ FGFVNF + + AA AV+
Sbjct: 238 FTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVE 297
Query: 259 ALNGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEK 318
+NG + YVG + EQ +K QG+NLYLKNLDD+V+DEK
Sbjct: 298 KMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEK 357
Query: 319 LRELFSEFGTITSCKIMRDPHGVSRGSGFVAFSTPEEATRA 359
L+E+FSE+G +TSCK+M + G+SRG GFVA+S PEEA A
Sbjct: 358 LKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLA 398
Score = 157 bits (398), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 96/271 (35%), Positives = 150/271 (55%), Gaps = 22/271 (8%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
+++ +LD I++ LY+ F+ G ++S +V D+ + S GYG+V F + A A+D L
Sbjct: 148 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGR-SKGYGFVQFEKEETAQAAIDKL 206
Query: 82 NFTPLNGKPIRIMY--SHRDPSVRKSGAA----NIFVKNLDKSIDHKALYDTFLVFGNIL 135
N LN K + + + +D + +SGA N++VKNL K I L TF +G+I
Sbjct: 207 NGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDIS 266
Query: 136 TCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALG 195
+ + D SG S+ +GFV F + E+A A++ NG +G+ +YV Q+K DRE
Sbjct: 267 SAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRR 326
Query: 196 GGKF-------------NNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCF 242
KF +N+Y+KNL +++ D+ LK++FSEYG +TS VM + G S+ F
Sbjct: 327 --KFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGF 384
Query: 243 GFVNFENADEAAKAVDALNGKKFDDKEWYVG 273
GFV + N +EA A+ +NGK K YV
Sbjct: 385 GFVAYSNPEEALLAMKEMNGKMIGRKPLYVA 415
Score = 107 bits (268), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 105/190 (55%), Gaps = 23/190 (12%)
Query: 20 TSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD 79
T++YV +L EI D +L F + G + S V +D + S +G+VNF +P+ AA A++
Sbjct: 239 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGFVNFVSPEAAAVAVE 297
Query: 80 VLNFTPLNGKPIRIMY-------SHRDPSVR------------KSGAANIFVKNLDKSID 120
+N L ++Y S R+ +R K +N+++KNLD S++
Sbjct: 298 KMNGISLGED---VLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVN 354
Query: 121 HKALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYV 180
+ L + F +GN+ +CK+ + G S+G+GFV + N E A A+ NGK+IG K +YV
Sbjct: 355 DEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYV 414
Query: 181 SHFQRKQDRE 190
+ QRK++R+
Sbjct: 415 ALAQRKEERQ 424
>AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 |
chr2:15361476-15364398 REVERSE LENGTH=609
Length = 609
Score = 293 bits (749), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 149/358 (41%), Positives = 223/358 (62%), Gaps = 3/358 (0%)
Query: 2 AQIHETDAVAQEANQPMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSL 61
A +H DA + ++ P+ SLYVGDL + + LYD F + + SVR+C+D ++ +SL
Sbjct: 6 AALHAADASSSGSSSPVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSL 65
Query: 62 GYGYVNFTNPKDAATALDVLNFTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDH 121
YGY NF + +DA A++ N + LNGK IR+M+S R P R++G N+FVKNL +S+ +
Sbjct: 66 CYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTN 125
Query: 122 KALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVS 181
L D F FGNI++CK+AT G+S+GYGFVQFE E++A AI N ++ DKE+YV
Sbjct: 126 AVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVG 185
Query: 182 HFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKC 241
F +K DR K+ N+Y+KNL +++D L++ F+E+G I S + +D + +
Sbjct: 186 KFMKKTDRVKPE---EKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRG 242
Query: 242 FGFVNFENADEAAKAVDALNGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQ 301
+ FVNF+N ++A +A + +NG KF K YVG Q ++ +E +
Sbjct: 243 YAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAK 302
Query: 302 GANLYLKNLDDNVDDEKLRELFSEFGTITSCKIMRDPHGVSRGSGFVAFSTPEEATRA 359
+N+Y+KN++ V +E+LR+ FS+ GTITS K+M D G S+G GFV FSTPEEA A
Sbjct: 303 VSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDA 360
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/265 (35%), Positives = 138/265 (52%), Gaps = 14/265 (5%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
++V +L + ++ L D+F + G +VS +V L +S GYG+V F A A+ L
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVA-TLEDGKSRGYGFVQFEQEDAAHAAIQTL 172
Query: 82 NFTPLNGKPIRI--MYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKI 139
N T + K I + D + N+++KNLD + L + F FG I++ I
Sbjct: 173 NSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAI 232
Query: 140 ATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALGG--- 196
A D + +GY FV F+N E A+ A + NG G K +YV Q+K +RE
Sbjct: 233 AKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKE 292
Query: 197 --------GKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFVNFE 248
K +N+YVKN++ A+T+++L+K FS+ GTITS +M D GKSK FGFV F
Sbjct: 293 KHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFS 352
Query: 249 NADEAAKAVDALNGKKFDDKEWYVG 273
+EA AV +G+ F K YV
Sbjct: 353 TPEEAIDAVKTFHGQMFHGKPLYVA 377
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 110/203 (54%), Gaps = 20/203 (9%)
Query: 4 IHETDAVAQEANQPMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGY 63
+ +TD V E T+LY+ +LD ++++ L + F + G++VS+ + +D + GY
Sbjct: 188 MKKTDRVKPEEKY---TNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKD-ENRLCRGY 243
Query: 64 GYVNFTNPKDAATALDVLNFTPLNGKPIRI----MYSHRDPSVRK------------SGA 107
+VNF NP+DA A + +N T K + + + R+ +R+ +
Sbjct: 244 AFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKV 303
Query: 108 ANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDN 167
+NI+VKN++ ++ + L F G I + K+ D G+SKG+GFV F E A +A+
Sbjct: 304 SNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKT 363
Query: 168 FNGKLIGDKEVYVSHFQRKQDRE 190
F+G++ K +YV+ Q+K+DR+
Sbjct: 364 FHGQMFHGKPLYVAIAQKKEDRK 386
>AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 |
chr1:12433356-12434735 REVERSE LENGTH=407
Length = 407
Score = 281 bits (718), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 144/283 (50%), Positives = 192/283 (67%), Gaps = 5/283 (1%)
Query: 78 LDVLNFTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTC 137
++VLN+ L GKP+RIM+S RDPS R SG N+FVKNLD+SID+K L D F FG +L+C
Sbjct: 1 MEVLNYCKLKGKPMRIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSC 60
Query: 138 KIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALGGG 197
K+A D SG SKGYGFVQF ++ S A + NG LI ++ ++V F + + + +
Sbjct: 61 KVARDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQWDKSRV--- 117
Query: 198 KFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFVNFENADEAAKAV 257
F NVYVKNL E TD DLK++F E+G ITSAVVM+D +GKS+ FGFVNFE A+ A A+
Sbjct: 118 -FTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAI 176
Query: 258 DALNGKKFDDKEWYVGXXXXXXXXXXXXXXQHE-QSMQETVDKYQGANLYLKNLDDNVDD 316
+ +NG D+KE +VG + E + + + +G NLY+KNLDD+VD+
Sbjct: 177 EKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDN 236
Query: 317 EKLRELFSEFGTITSCKIMRDPHGVSRGSGFVAFSTPEEATRA 359
KL ELFSEFGTITSCK+M +G+S+G GFV FST EEA++A
Sbjct: 237 TKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKA 279
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 99/269 (36%), Positives = 148/269 (55%), Gaps = 24/269 (8%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
++V +LD I++ QL D+F+ G+V+S +V RD A+ S GYG+V F + TA
Sbjct: 33 VFVKNLDESIDNKQLCDMFSAFGKVLSCKVARD-ASGVSKGYGFVQFYSDLSVYTAC--- 88
Query: 82 NFTPLNGKPIRIMYSHRDPSVRKSGA------ANIFVKNLDKSIDHKALYDTFLVFGNIL 135
NF NG IR + H P V + N++VKNL ++ L F FG I
Sbjct: 89 NFH--NGTLIRNQHIHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEIT 146
Query: 136 TCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAA-- 193
+ + DG G+S+ +GFV FE E+A AI+ NG ++ +KE++V QRK +R
Sbjct: 147 SAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLKA 206
Query: 194 ----------LGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFG 243
+ K N+YVKNL +++ + L+++FSE+GTITS VM +G SK G
Sbjct: 207 KFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVG 266
Query: 244 FVNFENADEAAKAVDALNGKKFDDKEWYV 272
FV F ++EA+KA+ +NGK +K YV
Sbjct: 267 FVEFSTSEEASKAMLKMNGKMVGNKPIYV 295
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 98/190 (51%), Gaps = 22/190 (11%)
Query: 20 TSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD 79
T++YV +L D+ L LF + G++ S V +D +S +G+VNF + A TA++
Sbjct: 119 TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKD-GEGKSRRFGFVNFEKAEAAVTAIE 177
Query: 80 VLNFTPLNGKPIRIMYSHR-------------------DPSVRKSGAANIFVKNLDKSID 120
+N ++ K + + + R D RK N++VKNLD S+D
Sbjct: 178 KMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRK--GMNLYVKNLDDSVD 235
Query: 121 HKALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYV 180
+ L + F FG I +CK+ +G SKG GFV+F E A A+ NGK++G+K +YV
Sbjct: 236 NTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYV 295
Query: 181 SHFQRKQDRE 190
S Q K+ +
Sbjct: 296 SLAQCKEQHK 305
>AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 |
chr3:5558676-5560993 REVERSE LENGTH=537
Length = 537
Score = 266 bits (680), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 150/364 (41%), Positives = 224/364 (61%), Gaps = 20/364 (5%)
Query: 6 ETDAVAQEANQPMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGY 65
ET A+ + SLYVGDL ++ + L D F+ VVSV +CR+ T +S+ Y Y
Sbjct: 7 ETQALGNHQHSSRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAY 66
Query: 66 VNFTNPKDAATALDVLNFTPLNGKPIRIMYSHRDPSVRK---SGAANIFVKNLDKSIDHK 122
+NF +P A+ A+ LN + L GK +RIM+S RD + R+ +G AN++VKNLD SI
Sbjct: 67 INFDSPFSASNAMTRLNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSS 126
Query: 123 ALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSH 182
L F FG+IL+CK+ + +GQSKG+GFVQF+ E+SA +A +G ++ K+++V+
Sbjct: 127 CLERMFCPFGSILSCKVVEE-NGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAK 185
Query: 183 FQRKQDRENAALGGGK-FNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKC 241
F K +R AA+ G + NVYVKNL E +TDD L +FS+YGT++S VVMRD G+S+
Sbjct: 186 FINKDER--AAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRG 243
Query: 242 FGFVNFENADEAAKAVDALNGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKY- 300
FGFVNF N + A KA+++L G + K+ +VG + E Q+ D +
Sbjct: 244 FGFVNFCNPENAKKAMESLCGLQLGSKKLFVG-------KALKKDERREMLKQKFSDNFI 296
Query: 301 -----QGANLYLKNLDDNVDDEKLRELFSEFGTITSCKIMRDPHGVSRGSGFVAFSTPEE 355
+ +NLY+KNL +++++ +LRE+F +G I S K+M +G S+G GFV FS EE
Sbjct: 297 AKPNMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEE 356
Query: 356 ATRA 359
+ +A
Sbjct: 357 SKQA 360
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 147/265 (55%), Gaps = 16/265 (6%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
LYV +LD+ I S L +F G ++S +V + QS G+G+V F + A +A L
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVVEE--NGQSKGFGFVQFDTEQSAVSARSAL 171
Query: 82 NFTPLNGKPIRIM-YSHRDPSVRKSG---AANIFVKNLDKSIDHKALYDTFLVFGNILTC 137
+ + + GK + + + ++D +G + N++VKNL +++ L+ F +G + +
Sbjct: 172 HGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSV 231
Query: 138 KIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENA----- 192
+ DG G+S+G+GFV F N E+A+ A+++ G +G K+++V +K +R
Sbjct: 232 VVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQKF 291
Query: 193 -----ALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFVNF 247
A +++N+YVKNLSE+M + L++IF YG I SA VM +G+SK FGFV F
Sbjct: 292 SDNFIAKPNMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCF 351
Query: 248 ENADEAAKAVDALNGKKFDDKEWYV 272
N +E+ +A LNG D K V
Sbjct: 352 SNCEESKQAKRYLNGFLVDGKPIVV 376
Score = 102 bits (253), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 108/204 (52%), Gaps = 23/204 (11%)
Query: 4 IHETDAVAQEANQPMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGY 63
I++ + A NQ T++YV +L + D L+ LF+Q G V SV V RD +S G+
Sbjct: 187 INKDERAAMAGNQD-STNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRD-GMGRSRGF 244
Query: 64 GYVNFTNPKDAATALDVLNFTPLNGKPI-----------RIMYSHR-------DPSVRKS 105
G+VNF NP++A A++ L L K + R M + P++R S
Sbjct: 245 GFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWS 304
Query: 106 GAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAI 165
N++VKNL +S++ L + F +G I++ K+ +G+SKG+GFV F N E ++ A
Sbjct: 305 ---NLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAK 361
Query: 166 DNFNGKLIGDKEVYVSHFQRKQDR 189
NG L+ K + V +RK+DR
Sbjct: 362 RYLNGFLVDGKPIVVRVAERKEDR 385
>AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:8031554-8033517 REVERSE LENGTH=363
Length = 363
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 106/168 (63%), Gaps = 3/168 (1%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDV 80
++YVG LD ++++ L++LF Q G VV+V V +D T YG++ + + +DA A+ V
Sbjct: 26 TVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKV 85
Query: 81 LNFTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILT-CKI 139
LN L+GKPIR+ + +D G AN+F+ NLD +D K LYDTF FG I + KI
Sbjct: 86 LNMIKLHGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKI 144
Query: 140 ATDG-SGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRK 186
D +G S+G+GF+ +++ E++ AI++ G+ + ++++ VS+ +K
Sbjct: 145 MRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKK 192
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 20/154 (12%)
Query: 202 VYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRD-VDGKSKCFGFVNFENADEAAKAVDAL 260
VYV L ++++ L ++F + G + + V +D V + +GF+ + + ++A A+ L
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 261 NGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEKLR 320
N K K V ++ Q+ GANL++ NLD +VD++ L
Sbjct: 87 NMIKLHGKPIRV-----------------NKASQDKKSLDVGANLFIGNLDPDVDEKLLY 129
Query: 321 ELFSEFGTITS-CKIMRDP-HGVSRGSGFVAFST 352
+ FS FG I S KIMRDP G SRG GF+++ +
Sbjct: 130 DTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDS 163
>AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=426
Length = 426
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 132/277 (47%), Gaps = 41/277 (14%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDV 80
S+Y G++ T++ + L ++F G + S ++ R + YG+V++ + + A+ A+
Sbjct: 64 SVYAGNIHTQVTEILLQEIFASTGPIESCKLIR----KDKSSYGFVHYFDRRCASMAIMT 119
Query: 81 LNFTPLNGKPIRIMYSHRDPSVRKSGAA-NIFVKNLDKSIDHKALYDTFLVFGNILTCKI 139
LN + G+P+++ +++ + + NIFV +L + AL+D+F F + ++
Sbjct: 120 LNGRHIFGQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARV 179
Query: 140 ATD-GSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYV------------------ 180
D +G+S+G+GFV F N++ AQ AI+ NGK + +++
Sbjct: 180 MWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKGATFGEDKHSSDG 239
Query: 181 ----------SHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEY--GTITS 228
S R+ E+A +F VYV NLS +T DL ++F G I
Sbjct: 240 KSVVELTNGSSEDGRELSNEDAPENNPQFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEE 299
Query: 229 AVVMRDVDGKSKCFGFVNFENADEAAKAVDALNGKKF 265
V RD K FGFV + DEAA A+ N + F
Sbjct: 300 VRVQRD-----KGFGFVRYNTHDEAALAIQMGNAQPF 331
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 117/282 (41%), Gaps = 38/282 (13%)
Query: 99 DPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCK-IATDGSGQSKGYGFVQFEN 157
DP+ +S ++ N+ + L + F G I +CK I D S YGFV + +
Sbjct: 58 DPTTCRS----VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS----YGFVHYFD 109
Query: 158 EESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLK 217
A AI NG+ I + + V+ RE+ + N++V +LS +TD L
Sbjct: 110 RRCASMAIMTLNGRHIFGQPMKVNWAYATGQREDTS----SHFNIFVGDLSPEVTDAALF 165
Query: 218 KIFSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVDALNGKKFDDKEWYVGXXX 276
FS + + + A VM D G+S+ FGFV+F N +A A++ +NGK ++
Sbjct: 166 DSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWAT 225
Query: 277 XXXXXXXXXXXQHEQSMQETVD-----------------KYQGANLYLKNLDDNVDDEKL 319
+S+ E + Q +Y+ NL V L
Sbjct: 226 KGATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPENNPQFTTVYVGNLSPEVTQLDL 285
Query: 320 RELFSEFG--TITSCKIMRDPHGVSRGSGFVAFSTPEEATRA 359
LF G I ++ RD +G GFV ++T +EA A
Sbjct: 286 HRLFYTLGAGVIEEVRVQRD-----KGFGFVRYNTHDEAALA 322
>AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=430
Length = 430
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/281 (27%), Positives = 133/281 (47%), Gaps = 45/281 (16%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDV 80
S+Y G++ T++ + L ++F G + S ++ R + YG+V++ + + A+ A+
Sbjct: 64 SVYAGNIHTQVTEILLQEIFASTGPIESCKLIR----KDKSSYGFVHYFDRRCASMAIMT 119
Query: 81 LNFTPLNGKPIRIMYSHRDPSVRKSGAA-NIFVKNLDKSIDHKALYDTFLVFGNILT--- 136
LN + G+P+++ +++ + + NIFV +L + AL+D+F F + +
Sbjct: 120 LNGRHIFGQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYR 179
Query: 137 -CKIATD-GSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYV-------------- 180
++ D +G+S+G+GFV F N++ AQ AI+ NGK + +++
Sbjct: 180 DARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKGATFGEDKH 239
Query: 181 --------------SHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEY--G 224
S R+ E+A +F VYV NLS +T DL ++F G
Sbjct: 240 SSDGKSVVELTNGSSEDGRELSNEDAPENNPQFTTVYVGNLSPEVTQLDLHRLFYTLGAG 299
Query: 225 TITSAVVMRDVDGKSKCFGFVNFENADEAAKAVDALNGKKF 265
I V RD K FGFV + DEAA A+ N + F
Sbjct: 300 VIEEVRVQRD-----KGFGFVRYNTHDEAALAIQMGNAQPF 335
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 118/286 (41%), Gaps = 42/286 (14%)
Query: 99 DPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCK-IATDGSGQSKGYGFVQFEN 157
DP+ +S ++ N+ + L + F G I +CK I D S YGFV + +
Sbjct: 58 DPTTCRS----VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS----YGFVHYFD 109
Query: 158 EESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLK 217
A AI NG+ I + + V+ RE+ + N++V +LS +TD L
Sbjct: 110 RRCASMAIMTLNGRHIFGQPMKVNWAYATGQREDTS----SHFNIFVGDLSPEVTDAALF 165
Query: 218 KIFSEYGTITS----AVVMRDVD-GKSKCFGFVNFENADEAAKAVDALNGKKFDDKEWYV 272
FS + + +S A VM D G+S+ FGFV+F N +A A++ +NGK ++
Sbjct: 166 DSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRC 225
Query: 273 GXXXXXXXXXXXXXXQHEQSMQETVD-----------------KYQGANLYLKNLDDNVD 315
+S+ E + Q +Y+ NL V
Sbjct: 226 NWATKGATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPENNPQFTTVYVGNLSPEVT 285
Query: 316 DEKLRELFSEFG--TITSCKIMRDPHGVSRGSGFVAFSTPEEATRA 359
L LF G I ++ RD +G GFV ++T +EA A
Sbjct: 286 QLDLHRLFYTLGAGVIEEVRVQRD-----KGFGFVRYNTHDEAALA 326
>AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4673027-4675950 FORWARD LENGTH=427
Length = 427
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 128/277 (46%), Gaps = 41/277 (14%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDV 80
S+YVG++ T++ + L ++F G V S ++ R + YG+V++ + + AA A+
Sbjct: 60 SVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIR----KDKSSYGFVHYFDRRSAALAILS 115
Query: 81 LNFTPLNGKPIRIMYSHRDPSVRKSGAA-NIFVKNLDKSIDHKALYDTFLVFGNILTCKI 139
LN L G+PI++ +++ + + NIFV +L + LY +F VF + ++
Sbjct: 116 LNGRHLFGQPIKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARV 175
Query: 140 ATD-GSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYV------------------ 180
D +G+S+G+GFV F N++ AQ AI+ NGK + +++
Sbjct: 176 MWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWATKGATSGDDKLSSDG 235
Query: 181 ----------SHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEY--GTITS 228
S ++ E +F VYV NL+ +T DL + F G I
Sbjct: 236 KSVVELTTGSSEDGKETLNEETPENNSQFTTVYVGNLAPEVTQLDLHRYFHALGAGVIEE 295
Query: 229 AVVMRDVDGKSKCFGFVNFENADEAAKAVDALNGKKF 265
V RD K FGFV + EAA A+ N + +
Sbjct: 296 VRVQRD-----KGFGFVRYNTHPEAALAIQMGNTQPY 327
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 119/282 (42%), Gaps = 38/282 (13%)
Query: 99 DPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCK-IATDGSGQSKGYGFVQFEN 157
DPS +S ++V N+ + L + F G + + K I D S YGFV + +
Sbjct: 54 DPSTCRS----VYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS----YGFVHYFD 105
Query: 158 EESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLK 217
SA AI + NG+ + + + V+ RE+ + N++V +LS +TD L
Sbjct: 106 RRSAALAILSLNGRHLFGQPIKVNWAYATGQREDTS----SHFNIFVGDLSPEVTDATLY 161
Query: 218 KIFSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVDALNGKKFDDKE----WYV 272
+ FS + + + A VM D G+S+ FGFV+F N +A A++ +NGK ++ W
Sbjct: 162 QSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWAT 221
Query: 273 -------------GXXXXXXXXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEKL 319
G + + + + Q +Y+ NL V L
Sbjct: 222 KGATSGDDKLSSDGKSVVELTTGSSEDGKETLNEETPENNSQFTTVYVGNLAPEVTQLDL 281
Query: 320 RELFSEF--GTITSCKIMRDPHGVSRGSGFVAFSTPEEATRA 359
F G I ++ RD +G GFV ++T EA A
Sbjct: 282 HRYFHALGAGVIEEVRVQRD-----KGFGFVRYNTHPEAALA 318
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 87/213 (40%), Gaps = 42/213 (19%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
++VGDL E+ D+ LY F+ RV D T +S G+G+V+F N +DA TA++ +
Sbjct: 146 IFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 205
Query: 82 NFTPLNGKPIRIMYSHR-----DPSVRKSGAA---------------------------- 108
N L+ + IR ++ + D + G +
Sbjct: 206 NGKWLSSRQIRCNWATKGATSGDDKLSSDGKSVVELTTGSSEDGKETLNEETPENNSQFT 265
Query: 109 NIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNF 168
++V NL + L+ F G + ++ + KG+GFV++ A AI
Sbjct: 266 TVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQ---RDKGFGFVRYNTHPEAALAIQ-- 320
Query: 169 NGKLIGDKEVYVSHFQRKQDRENAALGGGKFNN 201
+G+ + Y+ + Q K N G +N
Sbjct: 321 ----MGNTQPYLFNRQIKCSWGNKPTPPGTASN 349
>AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45A |
chr5:22295412-22298126 FORWARD LENGTH=387
Length = 387
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/265 (28%), Positives = 128/265 (48%), Gaps = 25/265 (9%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDV 80
SL++GDL ++++ + +F Q G+ S +V R+ T QS GYG++ F + A L
Sbjct: 61 SLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQT 120
Query: 81 LNFTPLNG--KPIRIMYSHRDPSVRK----SGAANIFVKNLDKSIDHKALYDTFL-VFGN 133
N P+ + R+ ++ ++ IFV +L + L DTF V+G+
Sbjct: 121 YNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGS 180
Query: 134 ILTCKIATD-GSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRK------ 186
+ K+ D +G+SKGYGFV+F +E A+ NG+ + + + K
Sbjct: 181 VKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKNALPMQ 240
Query: 187 ----QDRENAALGGGKFNN--VYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSK 240
Q+ + A G NN ++V L +TDD+LK IF ++G + + ++ GK +
Sbjct: 241 PAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGEL---LHVKIPPGK-R 296
Query: 241 CFGFVNFENADEAAKAVDALNGKKF 265
C GFV + N A A+ LNG +
Sbjct: 297 C-GFVQYANKASAEHALSVLNGTQL 320
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 119/256 (46%), Gaps = 10/256 (3%)
Query: 109 NIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDN 167
++++ +L + +D + F G + K+ + +GQS+GYGF++F + A+ +
Sbjct: 61 SLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQT 120
Query: 168 FNGKLIGDKE-VYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSE-YGT 225
+NG + E + ++ + E G + ++V +L+ +TD L F YG+
Sbjct: 121 YNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGS 180
Query: 226 ITSA-VVMRDVDGKSKCFGFVNFENADEAAKAVDALNGKKFDDKEWYVGXXXXXXXXXXX 284
+ A VV+ G+SK +GFV F + +E +A+ +NG+ + +G
Sbjct: 181 VKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKNALPMQ 240
Query: 285 XXX-QHEQSMQETVDKYQGANLYLKNLDDNVDDEKLRELFSEFGTITSCKIMRDPHGVSR 343
Q+ Q + +++ LD NV D++L+ +F +FG + KI P G +
Sbjct: 241 PAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKI---PPG--K 295
Query: 344 GSGFVAFSTPEEATRA 359
GFV ++ A A
Sbjct: 296 RCGFVQYANKASAEHA 311
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 90/199 (45%), Gaps = 25/199 (12%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQI-GQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD 79
+++VGDL E+ D L D F + G V +V D T +S GYG+V F + + A+
Sbjct: 155 TIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMT 214
Query: 80 VLNFTPLNGKPIRI--------------MYSHRDPSVRKSGAAN---IFVKNLDKSIDHK 122
+N + +P+RI MY + + N IFV LD ++
Sbjct: 215 EMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDD 274
Query: 123 ALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSH 182
L F FG +L KI K GFVQ+ N+ SA++A+ NG +G + + +S
Sbjct: 275 ELKSIFGQFGELLHVKIPP-----GKRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSW 329
Query: 183 FQR--KQDRENAALGGGKF 199
+ KQ + GGG +
Sbjct: 330 GRSPNKQSDQAQWNGGGYY 348
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 15 NQPMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDA 74
N P T+++VG LD + D +L +F Q G+++ V++ G+V + N A
Sbjct: 255 NDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRC------GFVQYANKASA 308
Query: 75 ATALDVLNFTPLNGKPIRIMYSHRDP 100
AL VLN T L G+ IR+ + R P
Sbjct: 309 EHALSVLNGTQLGGQSIRLSWG-RSP 333
>AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=416
Length = 416
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 130/274 (47%), Gaps = 38/274 (13%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDV 80
S+YVG++ ++ + L ++F G V S ++ R ++ YG+V++ + + A A+
Sbjct: 55 SVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIR----KEKSSYGFVHYFDRRSAGLAILS 110
Query: 81 LNFTPLNGKPIRIMYSHRDPSVRKSGAA-NIFVKNLDKSIDHKALYDTFLVFGNILTCKI 139
LN L G+PI++ +++ + + NIFV +L + L+ F V+ ++
Sbjct: 111 LNGRHLFGQPIKVNWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARV 170
Query: 140 ATD-GSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQR-------KQDREN 191
D +G+S+G+GFV F N++ AQ AID GK +G +++ + + KQ ++
Sbjct: 171 MWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATKGATSGEDKQSSDS 230
Query: 192 AAL-----GGGK-------------FNNVYVKNLSEAMTDDDLKKIFSEY--GTITSAVV 231
++ G GK + VYV NL+ ++ DL + F G I V
Sbjct: 231 KSVVELTSGDGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRV 290
Query: 232 MRDVDGKSKCFGFVNFENADEAAKAVDALNGKKF 265
RD K FGFV + EAA A+ N +
Sbjct: 291 QRD-----KGFGFVRYSTHVEAALAIQMGNTHSY 319
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 116/278 (41%), Gaps = 33/278 (11%)
Query: 99 DPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENE 158
DPS +S ++V N+ + L + F G + +CK+ + YGFV + +
Sbjct: 49 DPSTCRS----VYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRK---EKSSYGFVHYFDR 101
Query: 159 ESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKK 218
SA AI + NG+ + + + V+ RE+ + N++V +LS +TD L
Sbjct: 102 RSAGLAILSLNGRHLFGQPIKVNWAYASGQREDTS----SHFNIFVGDLSPEVTDAMLFT 157
Query: 219 IFSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVDALNGKKFDDKEWYVGXXXX 277
FS Y T + A VM D G+S+ FGFV+F N +A A+D + GK ++
Sbjct: 158 CFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATK 217
Query: 278 XXXXXXXXXXQHEQSMQETV--------------DKYQGANLYLKNLDDNVDDEKLRELF 323
+S+ E + Q +Y+ NL V L F
Sbjct: 218 GATSGEDKQSSDSKSVVELTSGDGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHF 277
Query: 324 SEF--GTITSCKIMRDPHGVSRGSGFVAFSTPEEATRA 359
G I ++ RD +G GFV +ST EA A
Sbjct: 278 HSLGAGVIEEVRVQRD-----KGFGFVRYSTHVEAALA 310
>AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917941 FORWARD
LENGTH=405
Length = 405
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 78/283 (27%), Positives = 131/283 (46%), Gaps = 28/283 (9%)
Query: 3 QIHETDAVAQEANQPMPT----SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQ 58
Q+ A A + QP +L++GDL ++++ LY F G++VS +V R+ T
Sbjct: 41 QMWNPQAAAPPSVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTG 100
Query: 59 QSLGYGYVNFTNPKDAATALDVLNFTPLNGKP---IRIMYSHRDPSVRKSGAAN--IFVK 113
Q GYG++ F + A L N P+ P R+ ++ ++ + + IFV
Sbjct: 101 QVEGYGFIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVG 160
Query: 114 NLDKSIDHKALYDTFLV-FGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNFNGK 171
+L + L +TF + ++ K+ D +G++KGYGFV+F +E A+ NG
Sbjct: 161 DLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGV 220
Query: 172 LIGDKEVYVSHFQRK------QDRENAALGGGKFNN------VYVKNLSEAMTDDDLKKI 219
+ + + K +D ++ G +N V+V L ++TDD LK +
Sbjct: 221 PCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNV 280
Query: 220 FSEYGTITSAVVMRDVDGKSKCFGFVNFENADEAAKAVDALNG 262
FS+YG I V + +C GFV F A +A+ LNG
Sbjct: 281 FSQYGEI----VHVKIPAGKRC-GFVQFSEKSCAEEALRMLNG 318
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 127/276 (46%), Gaps = 29/276 (10%)
Query: 100 PSVRKSGAANI---FVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQF 155
PSV+ + A I ++ +L +D LY F G +++ K+ + +GQ +GYGF++F
Sbjct: 51 PSVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEF 110
Query: 156 ENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDREN-AALGGGKFNN------VYVKNLS 208
+ +A+ + FN I F + R N A+L G + ++V +L+
Sbjct: 111 ASHAAAERVLQTFNNAPI-------PSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLA 163
Query: 209 EAMTDDDLKKIF-SEYGTITSA-VVMRDVDGKSKCFGFVNFENADEAAKAVDALNGKKFD 266
+TD L + F + Y ++ A VV+ V G++K +GFV F + E +A+ +NG
Sbjct: 164 ADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCS 223
Query: 267 DKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDK-YQGANLYLKNLDDNVDDEKLRELFSE 325
+ +G + T D +++ LD +V D+ L+ +FS+
Sbjct: 224 TRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQ 283
Query: 326 FGTITSCKIMRDPHGVSRGSGFVAF---STPEEATR 358
+G I KI P G + GFV F S EEA R
Sbjct: 284 YGEIVHVKI---PAG--KRCGFVQFSEKSCAEEALR 314
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 25/191 (13%)
Query: 21 SLYVGDLDTEINDSQLYDLFN-QIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD 79
+++VGDL ++ D L + F V +V D T ++ GYG+V F++ + A+
Sbjct: 156 TIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMT 215
Query: 80 VLNFTPLNGKPIRI--------MYSHRDPSVRKSGAA----------NIFVKNLDKSIDH 121
+N P + +P+RI + RD S + S A +FV LD S+
Sbjct: 216 EMNGVPCSTRPMRIGPAASKKGVTGQRD-SYQSSAAGVTTDNDPNNTTVFVGGLDASVTD 274
Query: 122 KALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVS 181
L + F +G I+ KI K GFVQF + A+ A+ NG +G V +S
Sbjct: 275 DHLKNVFSQYGEIVHVKIPA-----GKRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLS 329
Query: 182 HFQRKQDRENA 192
+ ++++
Sbjct: 330 WGRSPSNKQSG 340
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 7/97 (7%)
Query: 15 NQPMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDA 74
N P T+++VG LD + D L ++F+Q G++V V++ G+V F+ A
Sbjct: 256 NDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRC------GFVQFSEKSCA 309
Query: 75 ATALDVLNFTPLNGKPIRIMYSHRDPSVRKSGAANIF 111
AL +LN L G +R+ + R PS ++SG + F
Sbjct: 310 EEALRMLNGVQLGGTTVRLSWG-RSPSNKQSGDPSQF 345
>AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B |
chr3:6611398-6613823 REVERSE LENGTH=435
Length = 435
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 136/278 (48%), Gaps = 44/278 (15%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDV 80
+L+VGDL ++++ L+ F+ G+V SV+V R+ T QS GYG+V F + A A +V
Sbjct: 109 TLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLS---RAAAEEV 165
Query: 81 L-NFT----PLNGKPIRIMYSH----RDPSVRKSGAANIFVKNLDKSIDHKALYDTFL-V 130
L N++ P + +P RI ++ +V ++FV +L + L++TF
Sbjct: 166 LQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDR 225
Query: 131 FGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVS-------- 181
+ ++ + K+ D +G+SKGYGFV+F +E A+ NG ++++ V
Sbjct: 226 YPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRAI 285
Query: 182 HFQRKQDRENAALGGGKFNN-----------------VYVKNLSEAMTDDDLKKIFSEYG 224
Q++ + L GG +N ++V + + D+DL++ FS++G
Sbjct: 286 ANQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFG 345
Query: 225 TITSAVVMRDVDGKSKCFGFVNFENADEAAKAVDALNG 262
+ S + K GFV F + A A+++LNG
Sbjct: 346 EVVSVKIP-----VGKGCGFVQFADRKSAEDAIESLNG 378
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 134/272 (49%), Gaps = 31/272 (11%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNF 168
++V +L +D L+ F G + + K+ + + QS+GYGFV+F + +A+ + N+
Sbjct: 110 LWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNY 169
Query: 169 NGKLIGDK-EVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSE-YGTI 226
+G ++ + + + ++ E A+ G +V+V +LS +TD L + FS+ Y ++
Sbjct: 170 SGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSV 229
Query: 227 TSAVVMRDVD-GKSKCFGFVNFENADEAAKAVDALNGKKFDDKEWYVGXXXXXXXXXXXX 285
SA V+ D + G+SK +GFV F + +E ++A+ +NG +++ VG
Sbjct: 230 KSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVG----IATPKRAI 285
Query: 286 XXQHEQSMQETV------------------DKYQGANLYLKNLDDNVDDEKLRELFSEFG 327
Q + S Q + + A +++ +D +V DE LR+ FS+FG
Sbjct: 286 ANQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFG 345
Query: 328 TITSCKIMRDPHGVSRGSGFVAFSTPEEATRA 359
+ S KI V +G GFV F+ + A A
Sbjct: 346 EVVSVKIP-----VGKGCGFVQFADRKSAEDA 372
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 100/216 (46%), Gaps = 37/216 (17%)
Query: 21 SLYVGDLDTEINDSQLYDLF-NQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD 79
S++VGDL ++ D L++ F ++ V S +V D T +S GYG+V F + + + AL
Sbjct: 203 SVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALT 262
Query: 80 VLNFTPLNGKPIRI-----------MYSHRDPSVRKSGA-------------------AN 109
+N + + +R+ H +V +G A
Sbjct: 263 EMNGAYCSNRQMRVGIATPKRAIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTNAT 322
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFN 169
IFV +D + + L F FG +++ KI KG GFVQF + +SA++AI++ N
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPV-----GKGCGFVQFADRKSAEDAIESLN 377
Query: 170 GKLIGDKEVYVSHFQRKQDRENAALGGGKFNNVYVK 205
G +IG V +S + R +++ G ++N Y +
Sbjct: 378 GTVIGKNTVRLS-WGRSPNKQWRGDSGQQWNGGYSR 412
>AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=419
Length = 419
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 128/277 (46%), Gaps = 41/277 (14%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDV 80
S+YVG++ ++ + L ++F G V S ++ R ++ YG+V++ + + A A+
Sbjct: 55 SVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIR----KEKSSYGFVHYFDRRSAGLAILS 110
Query: 81 LNFTPLNGKPIRIMYSHRDPSVRKSGAA-NIFVKNLDKSIDHKALYDTFLVFGNILTCKI 139
LN L G+PI++ +++ + + NIFV +L + L+ F V+ ++
Sbjct: 111 LNGRHLFGQPIKVNWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARV 170
Query: 140 ATD-GSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQR-------KQDREN 191
D +G+S+G+GFV F N++ AQ AID GK +G +++ + + KQ ++
Sbjct: 171 MWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATKGATSGEDKQSSDS 230
Query: 192 AAL---------------------GGGKFNNVYVKNLSEAMTDDDLKKIFSEY--GTITS 228
++ ++ VYV NL+ ++ DL + F G I
Sbjct: 231 KSVVELTSGVSEDGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSLGAGVIEE 290
Query: 229 AVVMRDVDGKSKCFGFVNFENADEAAKAVDALNGKKF 265
V RD K FGFV + EAA A+ N +
Sbjct: 291 VRVQRD-----KGFGFVRYSTHVEAALAIQMGNTHSY 322
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 116/281 (41%), Gaps = 36/281 (12%)
Query: 99 DPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENE 158
DPS +S ++V N+ + L + F G + +CK+ + YGFV + +
Sbjct: 49 DPSTCRS----VYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRK---EKSSYGFVHYFDR 101
Query: 159 ESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKK 218
SA AI + NG+ + + + V+ RE+ + N++V +LS +TD L
Sbjct: 102 RSAGLAILSLNGRHLFGQPIKVNWAYASGQREDTS----SHFNIFVGDLSPEVTDAMLFT 157
Query: 219 IFSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVDALNGKKFDDKEWYVGXXXX 277
FS Y T + A VM D G+S+ FGFV+F N +A A+D + GK ++
Sbjct: 158 CFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATK 217
Query: 278 XXXXXXXXXXQHEQSMQETV-----------------DKYQGANLYLKNLDDNVDDEKLR 320
+S+ E + Q +Y+ NL V L
Sbjct: 218 GATSGEDKQSSDSKSVVELTSGVSEDGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLH 277
Query: 321 ELFSEF--GTITSCKIMRDPHGVSRGSGFVAFSTPEEATRA 359
F G I ++ RD +G GFV +ST EA A
Sbjct: 278 RHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHVEAALA 313
>AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr4:13554983-13557763 REVERSE
LENGTH=415
Length = 415
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 121/263 (46%), Gaps = 23/263 (8%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDV 80
SL++GDL ++++ L ++F G+ + +V R+ S GYG++ F N A L
Sbjct: 81 SLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQT 140
Query: 81 LNFTPLNG--KPIRIMYSHRDPSVRKSGAA---NIFVKNLDKSIDHKALYDTF-LVFGNI 134
N P+ + R+ ++ R+ +FV +L + L +TF V+ ++
Sbjct: 141 YNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSV 200
Query: 135 LTCKIATD-GSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQD----- 188
K+ D +G+SKGYGFV+F +E A+ NG+ + + K+
Sbjct: 201 KGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQP 260
Query: 189 ------RENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCF 242
+ N+ ++V + +++T+DDLK +F ++G + V + +C
Sbjct: 261 ASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGEL----VHVKIPAGKRC- 315
Query: 243 GFVNFENADEAAKAVDALNGKKF 265
GFV + N A +A+ LNG +
Sbjct: 316 GFVQYANRACAEQALSVLNGTQL 338
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 109/253 (43%), Gaps = 22/253 (8%)
Query: 109 NIFVKNLDKSIDHKALYDTFLVFGNILTCK-IATDGSGQSKGYGFVQFENEESAQNAIDN 167
++++ +L +D L + F + G K I +G S+GYGF++F N +A+ +
Sbjct: 81 SLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQT 140
Query: 168 FNGKLIGDKE-------VYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIF 220
+NG + E + +R+Q G + V+V +L+ +TD L + F
Sbjct: 141 YNGAPMPSSEQAFRLNWAQLGAGERRQAE-------GPEHTVFVGDLAPDVTDHMLTETF 193
Query: 221 SE-YGTITSAVVMRD-VDGKSKCFGFVNFENADEAAKAVDALNGKKFDDKEWYVGXXXXX 278
Y ++ A V+ D G+SK +GFV F + E +A+ +NG+ + G
Sbjct: 194 KAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANK 253
Query: 279 XXXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEKLRELFSEFGTITSCKIMRDP 338
+++ +D +V ++ L+ +F +FG + KI P
Sbjct: 254 KPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKI---P 310
Query: 339 HGVSRGSGFVAFS 351
G + GFV ++
Sbjct: 311 AG--KRCGFVQYA 321
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 83/187 (44%), Gaps = 22/187 (11%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQI-GQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD 79
+++VGDL ++ D L + F + V +V D T +S GYG+V F + + A+
Sbjct: 174 TVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMT 233
Query: 80 VLNFTPLNGKPIRI-MYSHRDPSVRKSGA---------------ANIFVKNLDKSIDHKA 123
+N + +P+R +++ P + + IFV +D+S+
Sbjct: 234 EMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDD 293
Query: 124 LYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHF 183
L F FG ++ KI K GFVQ+ N A+ A+ NG +G + + +S
Sbjct: 294 LKSVFGQFGELVHVKIPA-----GKRCGFVQYANRACAEQALSVLNGTQLGGQSIRLSWG 348
Query: 184 QRKQDRE 190
+ +++
Sbjct: 349 RSPSNKQ 355
>AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47A |
chr1:18357236-18360150 REVERSE LENGTH=445
Length = 445
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 127/270 (47%), Gaps = 33/270 (12%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDV 80
+L+VGDL ++++ L+ F+ +V SV+V R+ T QS GYG+V F + A AL
Sbjct: 120 TLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQS 179
Query: 81 LN--FTPLNGKPIRIMYSHRDPSVRKSGA----ANIFVKNLDKSIDHKALYDTFL-VFGN 133
+ P +P R+ ++ +++ +IFV +L + L +TF + +
Sbjct: 180 FSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPS 239
Query: 134 ILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYV--------SHFQ 184
+ K+ D +G+SKGYGFV+F +E A+ NG +++ V + +
Sbjct: 240 VKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAAAYG 299
Query: 185 RKQDRENAALGGGKFNN------------VYVKNLSEAMTDDDLKKIFSEYGTITSAVVM 232
++ + L GG N ++V L +T++DL + FS++G + S +
Sbjct: 300 QQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIP 359
Query: 233 RDVDGKSKCFGFVNFENADEAAKAVDALNG 262
K GFV F N A +A+ LNG
Sbjct: 360 -----VGKGCGFVQFANRQSAEEAIGNLNG 384
Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 126/266 (47%), Gaps = 24/266 (9%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCK-IATDGSGQSKGYGFVQFENEESAQNAIDNF 168
++V +L +D L+ F + + K I + QS+GYGFV+F + +A+ A+ +F
Sbjct: 121 LWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSF 180
Query: 169 NGKLIGDKE-VYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFS-EYGTI 226
+G + + E + ++ E A G +++V +L+ ++D L + F+ Y ++
Sbjct: 181 SGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSV 240
Query: 227 TSAVVMRDVD-GKSKCFGFVNFENADEAAKAVDALNGKKFDDKEWYVGXXXXXXXXXXXX 285
A V+ D + G+SK +GFV F + +E ++A+ +NG ++ VG
Sbjct: 241 KGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVG---IATPKRAAA 297
Query: 286 XXQHEQSMQETVDKYQGAN------------LYLKNLDDNVDDEKLRELFSEFGTITSCK 333
Q S T+ G N +++ LD +V +E L + FS+FG + S K
Sbjct: 298 YGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVK 357
Query: 334 IMRDPHGVSRGSGFVAFSTPEEATRA 359
I V +G GFV F+ + A A
Sbjct: 358 IP-----VGKGCGFVQFANRQSAEEA 378
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 99/211 (46%), Gaps = 32/211 (15%)
Query: 21 SLYVGDLDTEINDSQLYDLF-NQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD 79
S++VGDL +++D+ L + F + V +V D T +S GYG+V F + + + A+
Sbjct: 214 SIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMT 273
Query: 80 VLNFTPLNGKPIRI---------MYSHRDPSVR----------------KSGAANIFVKN 114
+N + + +R+ Y ++ S +S + IFV
Sbjct: 274 EMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGG 333
Query: 115 LDKSIDHKALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIG 174
LD + + L F FG +++ KI KG GFVQF N +SA+ AI N NG +IG
Sbjct: 334 LDADVTEEDLMQPFSDFGEVVSVKIPV-----GKGCGFVQFANRQSAEEAIGNLNGTVIG 388
Query: 175 DKEVYVSHFQRKQDRENAALGGGKFNNVYVK 205
V +S + R +++ + G ++N Y +
Sbjct: 389 KNTVRLS-WGRSPNKQWRSDSGNQWNGGYSR 418
>AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=421
Length = 421
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 129/273 (47%), Gaps = 36/273 (13%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDV 80
+L++GDL ++++ L F+Q G++VSV+V R+ T Q GYG++ F + A L
Sbjct: 25 TLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQT 84
Query: 81 LNFTPLNGKPI--RIMYSHRDPSVRKSGAA---NIFVKNLDKSIDHKALYDTFLV-FGNI 134
N T + G + R+ ++ S +K A +IFV +L + L +TF V + ++
Sbjct: 85 YNGTQMPGTELTFRLNWASFG-SGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSV 143
Query: 135 LTCKIATDGS-GQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQD----- 188
K+ TD S G+SKGYGFV+F E A+ NG + + +S K++
Sbjct: 144 RGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGVQQ 203
Query: 189 ------RENAALGGG------------KFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAV 230
+A+ + V NL + +T+++LKK FS+ G +
Sbjct: 204 QYVTKVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVK 263
Query: 231 VMRDVDGKSKCFGFVNFENADEAAKAVDALNGK 263
+ +K +G+V F+ A +AV + G+
Sbjct: 264 IP-----ATKGYGYVQFKTRPSAEEAVQRMQGQ 291
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 82/190 (43%), Gaps = 34/190 (17%)
Query: 21 SLYVGDLDTEINDSQLYDLFN-QIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD 79
S++VGDL ++ D L + F V +V D +T +S GYG+V F + A+
Sbjct: 117 SIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMA 176
Query: 80 VLNFTPLNGKPIRI----------------------------MYSHRDPSVRKSGAANIF 111
+N + +P+RI + ++ P I
Sbjct: 177 EMNGLYCSTRPMRISAATPKKNVGVQQQYVTKVTVPSAVAAPVQAYVAPPESDVTCTTIS 236
Query: 112 VKNLDKSIDHKALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGK 171
V NLD+++ + L F G ++ KI +KGYG+VQF+ SA+ A+ G+
Sbjct: 237 VANLDQNVTEEELKKAFSQLGEVIYVKIPA-----TKGYGYVQFKTRPSAEEAVQRMQGQ 291
Query: 172 LIGDKEVYVS 181
+IG + V +S
Sbjct: 292 VIGQQAVRIS 301
>AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917301 FORWARD
LENGTH=306
Length = 306
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 124/268 (46%), Gaps = 28/268 (10%)
Query: 3 QIHETDAVAQEANQPMPT----SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQ 58
Q+ A A + QP +L++GDL ++++ LY F G++VS +V R+ T
Sbjct: 41 QMWNPQAAAPPSVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTG 100
Query: 59 QSLGYGYVNFTNPKDAATALDVLNFTPLNGKP---IRIMYSHRDPSVRKSGAAN--IFVK 113
Q GYG++ F + A L N P+ P R+ ++ ++ + + IFV
Sbjct: 101 QVEGYGFIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVG 160
Query: 114 NLDKSIDHKALYDTFLV-FGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNFNGK 171
+L + L +TF + ++ K+ D +G++KGYGFV+F +E A+ NG
Sbjct: 161 DLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGV 220
Query: 172 LIGDKEVYVSHFQRK------QDRENAALGGGKFNN------VYVKNLSEAMTDDDLKKI 219
+ + + K +D ++ G +N V+V L ++TDD LK +
Sbjct: 221 PCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNV 280
Query: 220 FSEYGTITSAVVMRDVDGKSKCFGFVNF 247
FS+YG I V + +C GFV F
Sbjct: 281 FSQYGEI----VHVKIPAGKRC-GFVQF 303
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 123/266 (46%), Gaps = 26/266 (9%)
Query: 100 PSVRKSGAANI---FVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQF 155
PSV+ + A I ++ +L +D LY F G +++ K+ + +GQ +GYGF++F
Sbjct: 51 PSVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEF 110
Query: 156 ENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDREN-AALGGGKFNN------VYVKNLS 208
+ +A+ + FN I F + R N A+L G + ++V +L+
Sbjct: 111 ASHAAAERVLQTFNNAPI-------PSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLA 163
Query: 209 EAMTDDDLKKIF-SEYGTITSA-VVMRDVDGKSKCFGFVNFENADEAAKAVDALNGKKFD 266
+TD L + F + Y ++ A VV+ V G++K +GFV F + E +A+ +NG
Sbjct: 164 ADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCS 223
Query: 267 DKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDK-YQGANLYLKNLDDNVDDEKLRELFSE 325
+ +G + T D +++ LD +V D+ L+ +FS+
Sbjct: 224 TRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQ 283
Query: 326 FGTITSCKIMRDPHGVSRGSGFVAFS 351
+G I KI P G + GFV FS
Sbjct: 284 YGEIVHVKI---PAG--KRCGFVQFS 304
>AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=425
Length = 425
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 130/277 (46%), Gaps = 40/277 (14%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDV 80
+L++GDL ++++ L F+Q G++VSV+V R+ T Q GYG++ F + A L
Sbjct: 25 TLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQT 84
Query: 81 LNFTPLNGKPI--RIMYSHRDPSVRKSGAA---NIFVKNLDKSIDHKALYDTFLV-FGNI 134
N T + G + R+ ++ S +K A +IFV +L + L +TF V + ++
Sbjct: 85 YNGTQMPGTELTFRLNWASFG-SGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSV 143
Query: 135 LTCKIATDGS-GQSKGYGFVQFENEESAQNAIDNFNG----------------KLIGDKE 177
K+ TD S G+SKGYGFV+F E A+ NG K +G ++
Sbjct: 144 RGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGVQQ 203
Query: 178 VYVSHFQRKQDRENAALGGGK-----------FNNVYVKNLSEAMTDDDLKKIFSEYGTI 226
YV+ +A + + V NL + +T+++LKK FS+ G +
Sbjct: 204 QYVTKAVYPVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGEV 263
Query: 227 TSAVVMRDVDGKSKCFGFVNFENADEAAKAVDALNGK 263
+ +K +G+V F+ A +AV + G+
Sbjct: 264 IYVKIP-----ATKGYGYVQFKTRPSAEEAVQRMQGQ 295
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 83/194 (42%), Gaps = 38/194 (19%)
Query: 21 SLYVGDLDTEINDSQLYDLFN-QIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD 79
S++VGDL ++ D L + F V +V D +T +S GYG+V F + A+
Sbjct: 117 SIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMA 176
Query: 80 VLNFTPLNGKPIRI-------------------MYSHRDPSVRKSG-------------A 107
+N + +P+RI +Y PS +
Sbjct: 177 EMNGLYCSTRPMRISAATPKKNVGVQQQYVTKAVYPVTVPSAVAAPVQAYVAPPESDVTC 236
Query: 108 ANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDN 167
I V NLD+++ + L F G ++ KI +KGYG+VQF+ SA+ A+
Sbjct: 237 TTISVANLDQNVTEEELKKAFSQLGEVIYVKIPA-----TKGYGYVQFKTRPSAEEAVQR 291
Query: 168 FNGKLIGDKEVYVS 181
G++IG + V +S
Sbjct: 292 MQGQVIGQQAVRIS 305
>AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein
47C' | chr1:17432682-17434805 FORWARD LENGTH=434
Length = 434
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 125/265 (47%), Gaps = 28/265 (10%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQI--GQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATAL 78
+++VGDL ++++ L F ++VS++V R+ S GYG+V F + A L
Sbjct: 104 TIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVL 163
Query: 79 DVLNFTPLNG--KPIRI---MYSHRDPSVRKSGA-ANIFVKNLDKSIDHKALYDTFL-VF 131
N P+ +P R+ +S + + +G +IFV +L + L++TF +
Sbjct: 164 QEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEKY 223
Query: 132 GNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRE 190
++ K+ D +G+SKGYGFV+F +E A+ NG + + + ++
Sbjct: 224 PSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNG 283
Query: 191 NAALGG----GKF---------NNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDG 237
GG G F ++V L ++TD+DLK+ FSE+G I S +
Sbjct: 284 YQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIP----- 338
Query: 238 KSKCFGFVNFENADEAAKAVDALNG 262
K GFV F N A +A++ LNG
Sbjct: 339 VGKGCGFVQFVNRPNAEEALEKLNG 363
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 120/249 (48%), Gaps = 13/249 (5%)
Query: 110 IFVKNLDKSIDHKALYDTFLVF--GNILTCK-IATDGSGQSKGYGFVQFENEESAQNAID 166
I+V +L +D L F I++ K I +G S+GYGFV+FE+ + A +
Sbjct: 105 IWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQ 164
Query: 167 NFNGKLIGDK-EVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSE-YG 224
FNG + + + + ++ E G +++V +L+ ++D L + FSE Y
Sbjct: 165 EFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEKYP 224
Query: 225 TITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVDALNGKKFDDKEWYVGXXXXXXXXXX 283
++ +A V+ D + G+SK +GFV F + +E KA+ +NG K + +G
Sbjct: 225 SVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGY 284
Query: 284 XXXXQHEQSMQETVDKYQGAN--LYLKNLDDNVDDEKLRELFSEFGTITSCKIMRDPHGV 341
+ S T + N +++ LD +V DE L++ FSEFG I S KI V
Sbjct: 285 QQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIP-----V 339
Query: 342 SRGSGFVAF 350
+G GFV F
Sbjct: 340 GKGCGFVQF 348
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 88/180 (48%), Gaps = 24/180 (13%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQ-IGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD 79
S++VGDL +++D+ L++ F++ V + +V D T +S GYG+V F + + A+
Sbjct: 200 SIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 259
Query: 80 VLNFTPLNGKPIRIMYS--------HRDPSVRKSGA----------ANIFVKNLDKSIDH 121
+N + + +RI + + SGA IFV LD S+
Sbjct: 260 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTD 319
Query: 122 KALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVS 181
+ L F FG I++ KI KG GFVQF N +A+ A++ NG +IG + V +S
Sbjct: 320 EDLKQPFSEFGEIVSVKIPV-----GKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLS 374
>AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17427182 FORWARD LENGTH=432
Length = 432
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 123/251 (49%), Gaps = 17/251 (6%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGN--ILTCK-IATDGSGQSKGYGFVQFENEESAQNAID 166
I+V +L +D L +F I++ K I +G S+GYGFV+FE+ + A +
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 167 NFNGKLIGDK-EVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSE-YG 224
FNG + + + + ++ E G +++V +LS ++D+ L + FSE Y
Sbjct: 163 EFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYP 222
Query: 225 TITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVDALNGKKFDDKEWYVGXXXXXXXXXX 283
++ +A V+ D + G+SK +GFV F + +E KA+ +NG K + +G
Sbjct: 223 SVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIG--PATPRKTN 280
Query: 284 XXXXQHEQSMQETVDKYQG----ANLYLKNLDDNVDDEKLRELFSEFGTITSCKIMRDPH 339
Q T+ + +G +++ LD +V DE L++ F+EFG I S KI
Sbjct: 281 GYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIP---- 336
Query: 340 GVSRGSGFVAF 350
V +G GFV F
Sbjct: 337 -VGKGCGFVQF 346
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 124/265 (46%), Gaps = 28/265 (10%)
Query: 21 SLYVGDLDTEINDSQLYDLF--NQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATAL 78
+++VGDL ++++ L F ++VSV+V R+ S GYG+V F + A L
Sbjct: 102 TIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVL 161
Query: 79 DVLNFT--PLNGKPIRI---MYSHRDPSVRKSGA-ANIFVKNLDKSIDHKALYDTFL-VF 131
N T P +P R+ +S + + +G +IFV +L + L++TF +
Sbjct: 162 REFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKY 221
Query: 132 GNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRE 190
++ K+ D +G+SKGYGFV+F +E A+ NG + + + ++
Sbjct: 222 PSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNG 281
Query: 191 NAALGGGKFN-------------NVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDG 237
GG N ++V L ++TD+DLK+ F+E+G I S +
Sbjct: 282 YQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIP----- 336
Query: 238 KSKCFGFVNFENADEAAKAVDALNG 262
K GFV F N A +A++ LNG
Sbjct: 337 VGKGCGFVQFVNRPNAEEALEKLNG 361
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 86/180 (47%), Gaps = 24/180 (13%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQ-IGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD 79
S++VGDL +++D+ L++ F++ V + +V D T +S GYG+V F + + A+
Sbjct: 198 SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 257
Query: 80 VLNFTPLNGKPIRIM---------------YSHRDPSVRKSG---AANIFVKNLDKSIDH 121
+N + + +RI Y R G IFV LD S+
Sbjct: 258 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTD 317
Query: 122 KALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVS 181
+ L F FG I++ KI KG GFVQF N +A+ A++ NG +IG + V +S
Sbjct: 318 EDLKQPFNEFGEIVSVKIPV-----GKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLS 372
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 7/88 (7%)
Query: 18 MPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATA 77
M T+++VG LD+ + D L FN+ G++VSV++ G G+V F N +A A
Sbjct: 302 MNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIP------VGKGCGFVQFVNRPNAEEA 355
Query: 78 LDVLNFTPLNGKPIRIMYSHRDPSVRKS 105
L+ LN T + + +R+ + R+P+ ++
Sbjct: 356 LEKLNGTVIGKQTVRLSWG-RNPANKQP 382
>AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 116/249 (46%), Gaps = 21/249 (8%)
Query: 17 PMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAAT 76
P + +++G L ++ + L DL +IG++ VR+ +D + S GY +V F A
Sbjct: 113 PHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQK 172
Query: 77 ALDVLNFTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSID----HKALYDTFLVFG 132
A++ L+ GK IR S +F+ N+ K+ K + D
Sbjct: 173 AIEELHSKEFKGKTIRCSLSET--------KNRLFIGNIPKNWTEDEFRKVIEDVGPGVE 224
Query: 133 NILTCKIATDGSGQSKGYGFVQFENEESA----QNAIDNFNGKLIGDKEVYVSHFQRKQD 188
NI K T+ + +++G+ FV + N A Q ID+ N KL G+ V+ K
Sbjct: 225 NIELIKDPTN-TTRNRGFAFVLYYNNACADYSRQKMIDS-NFKLEGNAPT-VTWADPKSS 281
Query: 189 RENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFVNFE 248
E++A + +YVKN+ E + + LK++F +G +T V GK + FGFV++
Sbjct: 282 PEHSA-AAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGK-RDFGFVHYA 339
Query: 249 NADEAAKAV 257
A KAV
Sbjct: 340 ERSSALKAV 348
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 109/258 (42%), Gaps = 30/258 (11%)
Query: 107 AANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAI 165
+ +F+ L + + + L D G I ++ D SG SKGY FV F+ ++ AQ AI
Sbjct: 115 GSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAI 174
Query: 166 DNFNGKLIGDKEVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGT 225
+ + K K + S + K N +++ N+ + T+D+ +K+ + G
Sbjct: 175 EELHSKEFKGKTIRCSLSETK-------------NRLFIGNIPKNWTEDEFRKVIEDVGP 221
Query: 226 -ITSAVVMRDVDG--KSKCFGFVNFENADEAAKAVDALNGKKFDDKEWYVGXXXXXXXXX 282
+ + +++D +++ F FV + N D K D G
Sbjct: 222 GVENIELIKDPTNTTRNRGFAFVLYYNN----ACADYSRQKMIDSNFKLEGNAPTVTWAD 277
Query: 283 XXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEKLRELFSEFGTITSCKIMRDP-HGV 341
+H + Q LY+KN+ +N E+L+ELF G +T KI+ P G
Sbjct: 278 PKSSPEHSAAAA------QVKALYVKNIPENTSTEQLKELFQRHGEVT--KIVTPPGKGG 329
Query: 342 SRGSGFVAFSTPEEATRA 359
R GFV ++ A +A
Sbjct: 330 KRDFGFVHYAERSSALKA 347
>AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 116/249 (46%), Gaps = 21/249 (8%)
Query: 17 PMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAAT 76
P + +++G L ++ + L DL +IG++ VR+ +D + S GY +V F A
Sbjct: 113 PHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQK 172
Query: 77 ALDVLNFTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSID----HKALYDTFLVFG 132
A++ L+ GK IR S +F+ N+ K+ K + D
Sbjct: 173 AIEELHSKEFKGKTIRCSLSET--------KNRLFIGNIPKNWTEDEFRKVIEDVGPGVE 224
Query: 133 NILTCKIATDGSGQSKGYGFVQFENEESA----QNAIDNFNGKLIGDKEVYVSHFQRKQD 188
NI K T+ + +++G+ FV + N A Q ID+ N KL G+ V+ K
Sbjct: 225 NIELIKDPTN-TTRNRGFAFVLYYNNACADYSRQKMIDS-NFKLEGNAPT-VTWADPKSS 281
Query: 189 RENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFVNFE 248
E++A + +YVKN+ E + + LK++F +G +T V GK + FGFV++
Sbjct: 282 PEHSA-AAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGK-RDFGFVHYA 339
Query: 249 NADEAAKAV 257
A KAV
Sbjct: 340 ERSSALKAV 348
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 109/258 (42%), Gaps = 30/258 (11%)
Query: 107 AANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAI 165
+ +F+ L + + + L D G I ++ D SG SKGY FV F+ ++ AQ AI
Sbjct: 115 GSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAI 174
Query: 166 DNFNGKLIGDKEVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGT 225
+ + K K + S + K N +++ N+ + T+D+ +K+ + G
Sbjct: 175 EELHSKEFKGKTIRCSLSETK-------------NRLFIGNIPKNWTEDEFRKVIEDVGP 221
Query: 226 -ITSAVVMRDVDG--KSKCFGFVNFENADEAAKAVDALNGKKFDDKEWYVGXXXXXXXXX 282
+ + +++D +++ F FV + N D K D G
Sbjct: 222 GVENIELIKDPTNTTRNRGFAFVLYYNN----ACADYSRQKMIDSNFKLEGNAPTVTWAD 277
Query: 283 XXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEKLRELFSEFGTITSCKIMRDP-HGV 341
+H + Q LY+KN+ +N E+L+ELF G +T KI+ P G
Sbjct: 278 PKSSPEHSAAAA------QVKALYVKNIPENTSTEQLKELFQRHGEVT--KIVTPPGKGG 329
Query: 342 SRGSGFVAFSTPEEATRA 359
R GFV ++ A +A
Sbjct: 330 KRDFGFVHYAERSSALKA 347
>AT2G16940.1 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=561
Length = 561
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 84/163 (51%), Gaps = 19/163 (11%)
Query: 36 LYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVLNFTPLNGKPIRIMY 95
+Y+ F++ G+V VR+ D +++S G GYV F + A+ L+ PL G+P+ +
Sbjct: 198 VYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAI-ALSGQPLLGQPVMVKP 256
Query: 96 SHRDPSVRKS----------------GAANIFVKNLDKSIDHKALYDTFLVFGNILTCKI 139
S + ++ +S GA ++V NL ++ L F FG++ ++
Sbjct: 257 SEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQV 316
Query: 140 ATDGSGQSKGYGFVQFENEESAQNAIDNFNGKL-IGDKEVYVS 181
D +G KG+GFVQF E A+NA+ N NG+L I + + VS
Sbjct: 317 PRDETGLCKGFGFVQFARLEDARNAL-NLNGQLEIAGRAIKVS 358
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 14/167 (8%)
Query: 109 NIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDN 167
+F + + +Y+ F G + +I D S +S+G G+V+F + S AI
Sbjct: 183 TVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAIAL 242
Query: 168 FNGKLIGDKEVYVSHFQRKQD---------RENAALG--GGKFNNVYVKNLSEAMTDDDL 216
L+G + V V + +++ LG G +YV NL M++DDL
Sbjct: 243 SGQPLLG-QPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHINMSEDDL 301
Query: 217 KKIFSEYGTITSAVVMRDVDGKSKCFGFVNFENADEAAKAVDALNGK 263
+K+F +G++ V RD G K FGFV F ++A A++ LNG+
Sbjct: 302 RKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALN-LNGQ 347
>AT2G16940.2 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=610
Length = 610
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 84/163 (51%), Gaps = 19/163 (11%)
Query: 36 LYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVLNFTPLNGKPIRIMY 95
+Y+ F++ G+V VR+ D +++S G GYV F + A+ L+ PL G+P+ +
Sbjct: 247 VYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAI-ALSGQPLLGQPVMVKP 305
Query: 96 SHRDPSVRKS----------------GAANIFVKNLDKSIDHKALYDTFLVFGNILTCKI 139
S + ++ +S GA ++V NL ++ L F FG++ ++
Sbjct: 306 SEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQV 365
Query: 140 ATDGSGQSKGYGFVQFENEESAQNAIDNFNGKL-IGDKEVYVS 181
D +G KG+GFVQF E A+NA+ N NG+L I + + VS
Sbjct: 366 PRDETGLCKGFGFVQFARLEDARNAL-NLNGQLEIAGRAIKVS 407
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 14/167 (8%)
Query: 109 NIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDN 167
+F + + +Y+ F G + +I D S +S+G G+V+F + S AI
Sbjct: 232 TVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAIAL 291
Query: 168 FNGKLIGDKEVYVSHFQRKQD---------RENAALG--GGKFNNVYVKNLSEAMTDDDL 216
L+G + V V + +++ LG G +YV NL M++DDL
Sbjct: 292 SGQPLLG-QPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHINMSEDDL 350
Query: 217 KKIFSEYGTITSAVVMRDVDGKSKCFGFVNFENADEAAKAVDALNGK 263
+K+F +G++ V RD G K FGFV F ++A A++ LNG+
Sbjct: 351 RKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALN-LNGQ 396
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 91/195 (46%), Gaps = 28/195 (14%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
L+VG+L ++ +QL LF G V V V D T +S G+G+V ++ + A
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Query: 82 NFTPLNGKPIRIMYSHRDPSVRKSGAA--------------------------NIFVKNL 115
N L+G+P+R+ + P R+ G + ++V NL
Sbjct: 153 NGYELDGRPLRVN-AGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNL 211
Query: 116 DKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAIDNFNGKLIG 174
+D AL F G ++ ++ D SG+SKG+GFV +++ + QNAI + +G +
Sbjct: 212 SWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLD 271
Query: 175 DKEVYVSHFQRKQDR 189
+++ VS + + R
Sbjct: 272 GRQIRVSEAEARPPR 286
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 22/185 (11%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNF 168
+FV NL ++D L F GN+ ++ D +G+S+G+GFV + + A F
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Query: 169 NGKLIGDKEVYVSHFQRKQDRENAALGGGKF--------------------NNVYVKNLS 208
NG + + + V+ RE+ G + N VYV NLS
Sbjct: 153 NGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLS 212
Query: 209 EAMTDDDLKKIFSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVDALNGKKFDD 267
+ D L+ +FSE G + A V+ D D G+SK FGFV ++++ E A+ +L+G D
Sbjct: 213 WGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDG 272
Query: 268 KEWYV 272
++ V
Sbjct: 273 RQIRV 277
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 48/83 (57%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
+YVG+L ++D L LF++ G+VV RV D + +S G+G+V + + ++ A+ L
Sbjct: 206 VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSL 265
Query: 82 NFTPLNGKPIRIMYSHRDPSVRK 104
+ L+G+ IR+ + P R+
Sbjct: 266 DGADLDGRQIRVSEAEARPPRRQ 288
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 68/169 (40%), Gaps = 11/169 (6%)
Query: 202 VYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRD-VDGKSKCFGFVNFENADEAAKAVDAL 260
++V NL + L ++F G + V+ D + G+S+ FGFV + E A
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Query: 261 NGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGA---------NLYLKNLD 311
NG + D + V S + Y G +Y+ NL
Sbjct: 153 NGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLS 212
Query: 312 DNVDDEKLRELFSEFGTITSCKIMRDP-HGVSRGSGFVAFSTPEEATRA 359
VDD L LFSE G + +++ D G S+G GFV + + +E A
Sbjct: 213 WGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNA 261
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 94/192 (48%), Gaps = 12/192 (6%)
Query: 9 AVAQEANQPMPTS---LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGY 65
AV++ A P P+ L+VG+L ++N L LF Q G V V + T QS G+G+
Sbjct: 136 AVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGF 195
Query: 66 VNFTNPKDAATALDVLNFTPLNGKPI-------RIMYSHRDPSVRKSGAANIFVKNLDKS 118
V ++ +A TA++ N LNG+ + R R P V + A ++V NL
Sbjct: 196 VTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEP-AFRVYVGNLPWD 254
Query: 119 IDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKE 177
+D+ L F G ++ ++ D +G+S+G+GFV + + AI +G+ + +
Sbjct: 255 VDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRA 314
Query: 178 VYVSHFQRKQDR 189
+ V+ + + R
Sbjct: 315 IRVNVAEERPPR 326
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 87/164 (53%), Gaps = 3/164 (1%)
Query: 108 ANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAID 166
A +FV NL ++ +AL F G + ++ + + QS+G+GFV + + A+ A++
Sbjct: 150 AKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVE 209
Query: 167 NFNGKLIGDKEVYVSHFQRKQDR-ENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGT 225
FN + + + V+ + R E A VYV NL + + L+++FSE+G
Sbjct: 210 KFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGK 269
Query: 226 ITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVDALNGKKFDDK 268
+ A V+ D + G+S+ FGFV + DE +A+ AL+G+ + +
Sbjct: 270 VVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGR 313
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 14/161 (8%)
Query: 202 VYVKNLSEAMTDDDLKKIFSEYGTITSAVVM--RDVDGKSKCFGFVNFENADEAAKAVDA 259
++V NL+ + L +F + GT+ A V+ R+ D +S+ FGFV + DEA AV+
Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETD-QSRGFGFVTMSSVDEAETAVEK 210
Query: 260 LNGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEKL 319
N + + V +E + + +Y+ NL +VD+ +L
Sbjct: 211 FNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFR----------VYVGNLPWDVDNGRL 260
Query: 320 RELFSEFGTITSCKIMRDPH-GVSRGSGFVAFSTPEEATRA 359
+LFSE G + +++ D G SRG GFV S +E A
Sbjct: 261 EQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEA 301
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
+YVG+L ++++ +L LF++ G+VV RV D T +S G+G+V ++ + A+ L
Sbjct: 246 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISAL 305
Query: 82 NFTPLNGKPIRIMYSHRDPSVR 103
+ L G+ IR+ + P R
Sbjct: 306 DGQNLEGRAIRVNVAEERPPRR 327
>AT5G41690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16670126-16674189 REVERSE LENGTH=567
Length = 567
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 84/425 (19%), Positives = 163/425 (38%), Gaps = 87/425 (20%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATAL-- 78
+L+V +L E + D F ++G+VV V++ +L + +G G+V F + +A AL
Sbjct: 69 TLFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKL-VGCGFVEFASVNEAEEALQK 127
Query: 79 -------------DVLN----FTP--------LNGKPIRIMYSH---RDPSVRKSGAANI 110
DV N + P + K R + SH D S +
Sbjct: 128 KNGECLDNNKIFLDVANKKATYLPPKYCIDHKVWDKDYRRLESHPIEEDERPPNSVEEVL 187
Query: 111 FVKNLDKSIDHKALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNG 170
FV NL ++D F G +++ ++ + G+ GYGFV+F + + + A++N NG
Sbjct: 188 FVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHEGKHVGYGFVEFASADETKKALENKNG 247
Query: 171 KLIGDKEVYVS-------------------HFQRKQDRENAALG------------GGKF 199
+ + D ++++ ++ RE+ + G +
Sbjct: 248 EYLHDHKIFIDVAKTAPYPPGPKYNLVEKLCYEDYLRRESLPIDEDETPPEFVEAVGVRK 307
Query: 200 NNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFVNFENADEAAKAVDA 259
++V +LS + F + G + ++ + GK FV F +A+EA A++
Sbjct: 308 KTLFVAHLSRKTEITHIINFFKDVGEVVHVRLILNHTGKHVGCAFVEFGSANEAKMALET 367
Query: 260 LNGKKFDDKEWYVGXXXXXXXXXXXXXXQH----------------EQSMQETVD----- 298
NG+ +D + ++ H E +E +D
Sbjct: 368 KNGEYLNDCKIFLEVAKMVPYPPPKYCIHHKVWYEDYLRRESLLIEENETEEGLDDTPAL 427
Query: 299 ----KYQGANLYLKNLDDNVDDEKLRELFSEFGTITSCKIMRDPHGVSRGSGFVAFSTPE 354
+ L++ NL + + F + + +++ + G G GFV F++
Sbjct: 428 VEEFAVRKKTLFVANLSPRTKISHIIKFFKDVAEVVRVRLIVNHRGEHVGCGFVEFASVN 487
Query: 355 EATRA 359
EA +A
Sbjct: 488 EAQKA 492
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 63/311 (20%), Positives = 122/311 (39%), Gaps = 48/311 (15%)
Query: 94 MYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDGSGQSKGYGFV 153
+ S ++ +VR+ +FV NL + D F G ++ ++ + G+ G GFV
Sbjct: 57 LISVKEAAVREK---TLFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFV 113
Query: 154 QFENEESAQNAIDNFNGKLIGDKEVYVSHFQRK--------------QDRENAALGGGKF 199
+F + A+ A+ NG+ + + ++++ +K D++ L
Sbjct: 114 EFASVNEAEEALQKKNGECLDNNKIFLDVANKKATYLPPKYCIDHKVWDKDYRRLESHPI 173
Query: 200 NN-----------VYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFVNFE 248
++V NLS D+ F+ G + S +M + +GK +GFV F
Sbjct: 174 EEDERPPNSVEEVLFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHEGKHVGYGFVEFA 233
Query: 249 NADEAAKAVDALNGKKFDDKEWYV----------GXXXXXXXXXXXXXXQHEQSMQ---- 294
+ADE KA++ NG+ D + ++ G +S+
Sbjct: 234 SADETKKALENKNGEYLHDHKIFIDVAKTAPYPPGPKYNLVEKLCYEDYLRRESLPIDED 293
Query: 295 ETVDKYQGA------NLYLKNLDDNVDDEKLRELFSEFGTITSCKIMRDPHGVSRGSGFV 348
ET ++ A L++ +L + + F + G + +++ + G G FV
Sbjct: 294 ETPPEFVEAVGVRKKTLFVAHLSRKTEITHIINFFKDVGEVVHVRLILNHTGKHVGCAFV 353
Query: 349 AFSTPEEATRA 359
F + EA A
Sbjct: 354 EFGSANEAKMA 364
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 84/169 (49%), Gaps = 24/169 (14%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
LYVG+L I S+L +F + G VV V++ D T +S G+G+V + ++A A+ +
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177
Query: 82 NFTPLNGKPIRIMYSHRDPSVRKSG-------------------AANIFVKNLDKSIDHK 122
N + + G+ +++ + P V + G ++ NL ++ +
Sbjct: 178 NSSQIGGRTVKVNF----PEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQ 233
Query: 123 ALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAIDNFNG 170
L D F +L K+ + +G+S+G+GF+ FE+ E+ Q+A+ NG
Sbjct: 234 GLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNG 282
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 82/171 (47%), Gaps = 12/171 (7%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNF 168
++V NL +I L F G ++ +I D + +S+G+GFV + E A+ A+ F
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177
Query: 169 NGKLIGDKEVYVSHFQRKQDRENAALGGGKFNN----------VYVKNLSEAMTDDDLKK 218
N IG + V V+ + + EN + +N VY NL +T LK
Sbjct: 178 NSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKD 237
Query: 219 IFS-EYGTITSAVVMRDVDGKSKCFGFVNFENADEAAKAVDALNGKKFDDK 268
F + G + + V+ G+S+ FGF++FE+A+ A+ +NG + + +
Sbjct: 238 AFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGR 288
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 5/166 (3%)
Query: 197 GKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRD-VDGKSKCFGFVNFENADEAAK 255
G+ +YV NL +T +L +IF E GT+ ++ D V +S+ FGFV + +EA +
Sbjct: 113 GEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKE 172
Query: 256 AVDALNGKKFDDKEWYVG-XXXXXXXXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNV 314
A+ N + + V + + + VD +Y NL N+
Sbjct: 173 AMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPH--KVYAGNLGWNL 230
Query: 315 DDEKLRELFSEFGTITSCKIMRDPH-GVSRGSGFVAFSTPEEATRA 359
+ L++ F + + K++ + + G SRG GF++F + E A
Sbjct: 231 TSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSA 276
>AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=293
Length = 293
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 88/187 (47%), Gaps = 18/187 (9%)
Query: 11 AQEANQPMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTN 70
A+ +P P LYV ++ + +QL D+F G V+SV V R+ T +S G GYV +
Sbjct: 99 AEPVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGS 158
Query: 71 PKDAATALDVLNFTPLNGKPIRIMYS-------HRDPSVRKSGAANI---------FVKN 114
A A+ L+ T + G+ +R+ YS R+P V S I +V N
Sbjct: 159 INSAKIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGN 218
Query: 115 LDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAIDNFNGKLI 173
L L + F FG I++ ++ D +G+++ + F+ F + E A+ +FNG
Sbjct: 219 LPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL-SFNGTQY 277
Query: 174 GDKEVYV 180
+ + V
Sbjct: 278 EGRRIIV 284
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 96/184 (52%), Gaps = 14/184 (7%)
Query: 102 VRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEES 160
V+K ++V N+ +S D L D F FG +++ +++ + +G+S+G G+V + S
Sbjct: 102 VKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINS 161
Query: 161 AQNAIDNFNGKLIGDKEVYVSH-------FQRKQDRENAA----LGGGKFNNVYVKNLSE 209
A+ AI + +G +G +E+ V + +R + N+ L + VYV NL
Sbjct: 162 AKIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPW 221
Query: 210 AMTDDDLKKIFSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVDALNGKKFDDK 268
D L+ FS++GTI S V+ D G+++ F F++F + +E A+ + NG +++ +
Sbjct: 222 FTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL-SFNGTQYEGR 280
Query: 269 EWYV 272
V
Sbjct: 281 RIIV 284
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 2/156 (1%)
Query: 202 VYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVDAL 260
+YV N+ + L +F +GT+ S V R+ G+S+ G+V + + A A+ +L
Sbjct: 110 LYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASL 169
Query: 261 NGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEKLR 320
+G + +E V + ++ + +Y+ NL + LR
Sbjct: 170 DGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGLR 229
Query: 321 ELFSEFGTITSCKIMRDPH-GVSRGSGFVAFSTPEE 355
FS+FGTI S +++ D G +R F++F++ EE
Sbjct: 230 NHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEE 265
>AT1G45100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:17050631-17052189 FORWARD LENGTH=497
Length = 497
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 72/302 (23%), Positives = 126/302 (41%), Gaps = 40/302 (13%)
Query: 1 MAQIHETDAVAQEANQPMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQS 60
+ Q+H + + + + V +L + + FN + QVVSVR+ + +
Sbjct: 139 LRQVHTVQSKDETPPDFVDEVVIVSNLSPLTKIAHIKGFFNGVAQVVSVRLVVNHEGKH- 197
Query: 61 LGYGYVNFTNPKDAATALDVLNFTPLNGKPIRIMYSHRDPSVRKSGAA--NIFVKNLDKS 118
+GYG+V F + A AL+ N L+ I +M H P + A +FV NL S
Sbjct: 198 VGYGFVEFASAYGANKALEEKNGEYLHNHKILLMKGHESPGFAEEAAITKTLFVANLRDS 257
Query: 119 IDHKALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNA-------IDNFNGK 171
I + + F G ++ ++ + G+ G+GFV+F + A+ A + N+
Sbjct: 258 IQISDIINFFKDVGEVVHVRLIVNSQGKHAGWGFVEFASANEAEKALVKNGEYLHNYKIS 317
Query: 172 LIG-------------DKEVYVSHFQRKQD---RENAALGG------------GKFNNVY 203
L G D +V+ + R++ +E + G + N V+
Sbjct: 318 LDGAKTAPHRPPKFCLDHKVWYEDYLRRESLLIKEVEGVEGLDETPDFLEEVAARKNTVF 377
Query: 204 VKNLSE--AMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFVNFENADEAAKAVDALN 261
V NL + + FS+ G I ++ D G+ GFV F +++EA KA+
Sbjct: 378 VANLPYNCRLIVPTIINFFSDVGEIVHIRIIVDHMGEPVGCGFVEFNSSNEAEKALQKKT 437
Query: 262 GK 263
GK
Sbjct: 438 GK 439
>AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352842-354965 FORWARD LENGTH=467
Length = 467
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 113/245 (46%), Gaps = 21/245 (8%)
Query: 17 PMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAAT 76
P + +++G L ++ + L DL +IG++ VR+ +D + S GY +V F A
Sbjct: 93 PHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQK 152
Query: 77 ALDVLNFTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILT 136
A++ L+ GK IR S +F+ N+ K+ D F +
Sbjct: 153 AIEELHSKEFKGKTIRCSLSET--------KNRLFIGNIPKNWTE----DEFRKVIEDVG 200
Query: 137 CKIATDGSGQSKGYGFVQFENEESA----QNAIDNFNGKLIGDKEVYVSHFQRKQDRENA 192
T+ + +++G+ FV + N A Q ID+ N KL G+ V+ K E++
Sbjct: 201 PGDPTN-TTRNRGFAFVLYYNNACADYSRQKMIDS-NFKLEGNAPT-VTWADPKSSPEHS 257
Query: 193 ALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFVNFENADE 252
A + +YVKN+ E + + LK++F +G +T V GK + FGFV++
Sbjct: 258 A-AAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGK-RDFGFVHYAERSS 315
Query: 253 AAKAV 257
A KAV
Sbjct: 316 ALKAV 320
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 103/255 (40%), Gaps = 32/255 (12%)
Query: 107 AANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAI 165
+ +F+ L + + + L D G I ++ D SG SKGY FV F+ ++ AQ AI
Sbjct: 95 GSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAI 154
Query: 166 DNFNGKLIGDKEVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGT 225
+ + K K + S + K N +++ N+ + T+D+ +K+ + G
Sbjct: 155 EELHSKEFKGKTIRCSLSETK-------------NRLFIGNIPKNWTEDEFRKVIEDVGP 201
Query: 226 ITSAVVMRDVDGKSKCFGFVNFENADEAAKAVDALNGKKFDDKEWYVGXXXXXXXXXXXX 285
R+ + F FV + N D K D G
Sbjct: 202 GDPTNTTRN-----RGFAFVLYYNN----ACADYSRQKMIDSNFKLEGNAPTVTWADPKS 252
Query: 286 XXQHEQSMQETVDKYQGANLYLKNLDDNVDDEKLRELFSEFGTITSCKIMRDP-HGVSRG 344
+H + + LY+KN+ +N E+L+ELF G +T KI+ P G R
Sbjct: 253 SPEHSAAAAQV------KALYVKNIPENTSTEQLKELFQRHGEVT--KIVTPPGKGGKRD 304
Query: 345 SGFVAFSTPEEATRA 359
GFV ++ A +A
Sbjct: 305 FGFVHYAERSSALKA 319
>AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=294
Length = 294
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 95/185 (51%), Gaps = 15/185 (8%)
Query: 102 VRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG--SGQSKGYGFVQFENEE 159
V+K ++V N+ +S D L D F FG +++ ++ + +G+S+G G+V +
Sbjct: 102 VKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSIN 161
Query: 160 SAQNAIDNFNGKLIGDKEVYVSH-------FQRKQDRENAA----LGGGKFNNVYVKNLS 208
SA+ AI + +G +G +E+ V + +R + N+ L + VYV NL
Sbjct: 162 SAKIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLP 221
Query: 209 EAMTDDDLKKIFSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVDALNGKKFDD 267
D L+ FS++GTI S V+ D G+++ F F++F + +E A+ + NG +++
Sbjct: 222 WFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL-SFNGTQYEG 280
Query: 268 KEWYV 272
+ V
Sbjct: 281 RRIIV 285
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 88/188 (46%), Gaps = 19/188 (10%)
Query: 11 AQEANQPMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVC-RDLATQQSLGYGYVNFT 69
A+ +P P LYV ++ + +QL D+F G V+SV V R+ T +S G GYV
Sbjct: 99 AEPVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMG 158
Query: 70 NPKDAATALDVLNFTPLNGKPIRIMYS-------HRDPSVRKSGAANI---------FVK 113
+ A A+ L+ T + G+ +R+ YS R+P V S I +V
Sbjct: 159 SINSAKIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVG 218
Query: 114 NLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAIDNFNGKL 172
NL L + F FG I++ ++ D +G+++ + F+ F + E A+ +FNG
Sbjct: 219 NLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL-SFNGTQ 277
Query: 173 IGDKEVYV 180
+ + V
Sbjct: 278 YEGRRIIV 285
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 86/170 (50%), Gaps = 15/170 (8%)
Query: 108 ANIFVKNLDKSIDHKALYDTFLVFGNI-LTCKIATDGSGQSKGYGFVQFENEESAQNAID 166
A +FV NL +D +AL F G + ++ I + QS+G+GFV E A+ A++
Sbjct: 113 AKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVE 172
Query: 167 NFNGKLIGDKEVYV-------SHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKI 219
FN + + + V S +R+ +AA +YV NL + L+++
Sbjct: 173 KFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAF------RIYVGNLPWDVDSGRLERL 226
Query: 220 FSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVDALNGKKFDDK 268
FSE+G + A V+ D + G+S+ FGFV N +E A+ AL+G+ + +
Sbjct: 227 FSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGR 276
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 87/181 (48%), Gaps = 9/181 (4%)
Query: 17 PMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAAT 76
P L+VG+L +++ L LF Q G V V + T QS G+G+V + ++A
Sbjct: 110 PEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEK 169
Query: 77 ALDVLNFTPLNGKPI-------RIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFL 129
A++ N +NG+ + R R P V + A I+V NL +D L F
Sbjct: 170 AVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDA-AFRIYVGNLPWDVDSGRLERLFS 228
Query: 130 VFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQD 188
G ++ ++ +D +G+S+G+GFVQ NE AI +G+ + + + V+ + +
Sbjct: 229 EHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEERTR 288
Query: 189 R 189
R
Sbjct: 289 R 289
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 14/161 (8%)
Query: 202 VYVKNLSEAMTDDDLKKIFSEYGT--ITSAVVMRDVDGKSKCFGFVNFENADEAAKAVDA 259
++V NL + L +F + GT I+ + RD D +S+ FGFV +EA KAV+
Sbjct: 115 LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTD-QSRGFGFVTMSTVEEAEKAVEK 173
Query: 260 LNGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEKL 319
N + + + V ++ + + +Y+ NL +VD +L
Sbjct: 174 FNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFR----------IYVGNLPWDVDSGRL 223
Query: 320 RELFSEFGTITSCKIMRDPH-GVSRGSGFVAFSTPEEATRA 359
LFSE G + +++ D G SRG GFV S E A
Sbjct: 224 ERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVA 264
>AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 117/252 (46%), Gaps = 27/252 (10%)
Query: 17 PMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAAT 76
P + +++G L ++ + L DL +IG++ VR+ +D + S GY +V F A
Sbjct: 113 PHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQK 172
Query: 77 ALDVLN---FTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSID----HKALYDTFL 129
A++ L+ F + + S+R +F+ N+ K+ K + D
Sbjct: 173 AIEELHSKEFKASSTANCSLSLSNR-----------LFIGNIPKNWTEDEFRKVIEDVGP 221
Query: 130 VFGNILTCKIATDGSGQSKGYGFVQFENEESA----QNAIDNFNGKLIGDKEVYVSHFQR 185
NI K T+ + +++G+ FV + N A Q ID+ N KL G+ V+
Sbjct: 222 GVENIELIKDPTN-TTRNRGFAFVLYYNNACADYSRQKMIDS-NFKLEGNAPT-VTWADP 278
Query: 186 KQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFV 245
K E++A + +YVKN+ E + + LK++F +G +T V GK + FGFV
Sbjct: 279 KSSPEHSA-AAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGK-RDFGFV 336
Query: 246 NFENADEAAKAV 257
++ A KAV
Sbjct: 337 HYAERSSALKAV 348
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 108/258 (41%), Gaps = 30/258 (11%)
Query: 107 AANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAI 165
+ +F+ L + + + L D G I ++ D SG SKGY FV F+ ++ AQ AI
Sbjct: 115 GSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAI 174
Query: 166 DNFNGKLIGDKEVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGT 225
+ + K + N +L N +++ N+ + T+D+ +K+ + G
Sbjct: 175 EELHSKEF-----------KASSTANCSLS--LSNRLFIGNIPKNWTEDEFRKVIEDVGP 221
Query: 226 -ITSAVVMRDVDG--KSKCFGFVNFENADEAAKAVDALNGKKFDDKEWYVGXXXXXXXXX 282
+ + +++D +++ F FV + N D K D G
Sbjct: 222 GVENIELIKDPTNTTRNRGFAFVLYYNN----ACADYSRQKMIDSNFKLEGNAPTVTWAD 277
Query: 283 XXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEKLRELFSEFGTITSCKIMRDP-HGV 341
+H + Q LY+KN+ +N E+L+ELF G +T KI+ P G
Sbjct: 278 PKSSPEHSAAAA------QVKALYVKNIPENTSTEQLKELFQRHGEVT--KIVTPPGKGG 329
Query: 342 SRGSGFVAFSTPEEATRA 359
R GFV ++ A +A
Sbjct: 330 KRDFGFVHYAERSSALKA 347
>AT2G16940.3 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=599
Length = 599
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 28/172 (16%)
Query: 36 LYDLFNQIGQVVS---------VRVCRDLATQQSLGYGYVNFTNPKDAATALDVLNFTPL 86
+Y+ F++ G+V VR+ D +++S G GYV F + A+ L+ PL
Sbjct: 227 VYEFFSRAGKVCPFLCRFHVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAI-ALSGQPL 285
Query: 87 NGKPIRIMYSHRDPSVRKS----------------GAANIFVKNLDKSIDHKALYDTFLV 130
G+P+ + S + ++ +S GA ++V NL ++ L F
Sbjct: 286 LGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHINMSEDDLRKVFES 345
Query: 131 FGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKL-IGDKEVYVS 181
FG++ ++ D +G KG+GFVQF E A+NA+ N NG+L I + + VS
Sbjct: 346 FGSVELVQVPRDETGLCKGFGFVQFARLEDARNAL-NLNGQLEIAGRAIKVS 396
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 14/148 (9%)
Query: 128 FLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRK 186
FL ++ +I D S +S+G G+V+F + S AI L+G + V V + +
Sbjct: 240 FLCRFHVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAIALSGQPLLG-QPVMVKPSEAE 298
Query: 187 QD---------RENAALG--GGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDV 235
++ LG G +YV NL M++DDL+K+F +G++ V RD
Sbjct: 299 KNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDE 358
Query: 236 DGKSKCFGFVNFENADEAAKAVDALNGK 263
G K FGFV F ++A A++ LNG+
Sbjct: 359 TGLCKGFGFVQFARLEDARNALN-LNGQ 385
>AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 202 VYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRD-VDGKSKCFGFVNFENADEAAKAVDAL 260
VY+ N+ +T++ L K+ E+G + VM D G+S+ FGF ++ ++A V+ L
Sbjct: 78 VYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKL 137
Query: 261 NGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEKLR 320
NG + +E V + Y+ +Y+ NL V E L
Sbjct: 138 NGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYK---VYVGNLAKTVTKEMLE 194
Query: 321 ELFSEFGTITSCKIMRDPHGVSR--GSGFVAFSTPEEATRA 359
LFSE G + S K+ R P G S+ G GFV FS+ E+ A
Sbjct: 195 NLFSEKGKVVSAKVSRVP-GTSKSTGFGFVTFSSEEDVEAA 234
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 87/173 (50%), Gaps = 14/173 (8%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
+Y+G++ + + QL L + G V V+V D + +S +G+ + +DA ++ L
Sbjct: 78 VYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKL 137
Query: 82 NFTPLNGKPIRI------MYSHRDPSVRKS-------GAANIFVKNLDKSIDHKALYDTF 128
N + G+ I++ + S D SV +S ++V NL K++ + L + F
Sbjct: 138 NGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENLF 197
Query: 129 LVFGNILTCKIA-TDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYV 180
G +++ K++ G+ +S G+GFV F +EE + AI N L+ +++ V
Sbjct: 198 SEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRV 250
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 92/186 (49%), Gaps = 16/186 (8%)
Query: 99 DPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFEN 157
DPS A +++ N+ +++ ++ L G + ++ D SG+S+ +GF ++
Sbjct: 69 DPS--SEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKS 126
Query: 158 EESAQNAIDNFNGKLIGDKEVYVSHFQRK---------QDRENAALGGGKFNNVYVKNLS 208
E A ++ NG + +E+ V+ ++ E++A + VYV NL+
Sbjct: 127 VEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYK-VYVGNLA 185
Query: 209 EAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKC--FGFVNFENADEAAKAVDALNGKKFD 266
+ +T + L+ +FSE G + SA V R V G SK FGFV F + ++ A+ ALN +
Sbjct: 186 KTVTKEMLENLFSEKGKVVSAKVSR-VPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLE 244
Query: 267 DKEWYV 272
++ V
Sbjct: 245 GQKIRV 250
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 46/75 (61%)
Query: 19 PTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATAL 78
P +YVG+L + L +LF++ G+VVS +V R T +S G+G+V F++ +D A+
Sbjct: 176 PYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAI 235
Query: 79 DVLNFTPLNGKPIRI 93
LN + L G+ IR+
Sbjct: 236 VALNNSLLEGQKIRV 250
>AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 202 VYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRD-VDGKSKCFGFVNFENADEAAKAVDAL 260
VY+ N+ +T++ L K+ E+G + VM D G+S+ FGF ++ ++A V+ L
Sbjct: 78 VYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKL 137
Query: 261 NGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEKLR 320
NG + +E V + Y+ +Y+ NL V E L
Sbjct: 138 NGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYK---VYVGNLAKTVTKEMLE 194
Query: 321 ELFSEFGTITSCKIMRDPHGVSR--GSGFVAFSTPEEATRA 359
LFSE G + S K+ R P G S+ G GFV FS+ E+ A
Sbjct: 195 NLFSEKGKVVSAKVSRVP-GTSKSTGFGFVTFSSEEDVEAA 234
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 87/173 (50%), Gaps = 14/173 (8%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
+Y+G++ + + QL L + G V V+V D + +S +G+ + +DA ++ L
Sbjct: 78 VYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKL 137
Query: 82 NFTPLNGKPIRI------MYSHRDPSVRKS-------GAANIFVKNLDKSIDHKALYDTF 128
N + G+ I++ + S D SV +S ++V NL K++ + L + F
Sbjct: 138 NGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENLF 197
Query: 129 LVFGNILTCKIA-TDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYV 180
G +++ K++ G+ +S G+GFV F +EE + AI N L+ +++ V
Sbjct: 198 SEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRV 250
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 92/186 (49%), Gaps = 16/186 (8%)
Query: 99 DPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFEN 157
DPS A +++ N+ +++ ++ L G + ++ D SG+S+ +GF ++
Sbjct: 69 DPS--SEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKS 126
Query: 158 EESAQNAIDNFNGKLIGDKEVYVSHFQRK---------QDRENAALGGGKFNNVYVKNLS 208
E A ++ NG + +E+ V+ ++ E++A + VYV NL+
Sbjct: 127 VEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYK-VYVGNLA 185
Query: 209 EAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKC--FGFVNFENADEAAKAVDALNGKKFD 266
+ +T + L+ +FSE G + SA V R V G SK FGFV F + ++ A+ ALN +
Sbjct: 186 KTVTKEMLENLFSEKGKVVSAKVSR-VPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLE 244
Query: 267 DKEWYV 272
++ V
Sbjct: 245 GQKIRV 250
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 46/75 (61%)
Query: 19 PTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATAL 78
P +YVG+L + L +LF++ G+VVS +V R T +S G+G+V F++ +D A+
Sbjct: 176 PYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAI 235
Query: 79 DVLNFTPLNGKPIRI 93
LN + L G+ IR+
Sbjct: 236 VALNNSLLEGQKIRV 250
>AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14898341-14899590 FORWARD LENGTH=308
Length = 308
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFN 169
+FV NL S+ + + F G + +I G+++G+ FV + E AQ AID F+
Sbjct: 97 LFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKFD 156
Query: 170 GKLIGDKEVYVSHFQR--------KQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFS 221
+ + + VS +R D + A G + + +YV NL+ L+++F+
Sbjct: 157 TFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTR-HKLYVSNLAWKARSTHLRELFT 215
Query: 222 --EYGTITSAVVMRDVDGKSKCFGFVNFENADEAAKAVDALNGKKF 265
++ +++ VV D +G+S +GFV+F +EA A+ LNGK+
Sbjct: 216 AADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEI 261
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 12/163 (7%)
Query: 202 VYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFVNFENADEAAKAVDALN 261
++V NL +M+ +D+ ++F + GT+ + ++R DGK++ F FV + +EA A+D
Sbjct: 97 LFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAID--- 153
Query: 262 GKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQG---ANLYLKNLDDNVDDEK 318
KFD + V +S + G LY+ NL
Sbjct: 154 --KFDT--FQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKARSTH 209
Query: 319 LRELFS--EFGTITSCKIMRDPHGVSRGSGFVAFSTPEEATRA 359
LRELF+ +F +++ + DP G S G GFV+F+T EEA A
Sbjct: 210 LRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENA 252
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 15/180 (8%)
Query: 15 NQPMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDA 74
N + L+V +L ++ + + +LF Q G V +V + R ++ G+ +V + ++A
Sbjct: 90 NSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQ-KDGKNRGFAFVTMASGEEA 148
Query: 75 ATALDVLNFTPLNGKPIRIMYSHR-------DPSVRKSGAA-----NIFVKNLDKSIDHK 122
A+D + ++G+ I + ++ R P+ S A ++V NL
Sbjct: 149 QAAIDKFDTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKARST 208
Query: 123 ALYDTFLV--FGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYV 180
L + F F + + D G+S GYGFV F E A+NAI NGK I + + +
Sbjct: 209 HLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIMGRPITL 268
>AT1G32790.1 | Symbols: CID11 | CTC-interacting domain 11 |
chr1:11875174-11877188 REVERSE LENGTH=358
Length = 358
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 20/175 (11%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDV 80
++YV DLD ++ + QL LF GQVV R+C D L + ++ FT+ + A TAL++
Sbjct: 174 TVYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGD--PNSVLRFAFIEFTDEEGAMTALNL 231
Query: 81 ----LNFTPLNGKPIRIMYSHRDPSV-------RKSGAANIFVKNLDKSI---DHKALYD 126
L F P+ P + + +P+ R+ A I+ N+DK + D K ++
Sbjct: 232 SGTMLGFYPVKVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQSDVKIFFE 291
Query: 127 TFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVS 181
+F G + ++ D S FV+F ESA A+ N +G ++G + VS
Sbjct: 292 SFC--GEVYRLRLLGDYQ-HSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRVS 342
>AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9207164-9214412 REVERSE LENGTH=747
Length = 747
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 76/152 (50%), Gaps = 3/152 (1%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
L+VG + + ++ F Q G V+ V + +D T Q G +V + KDA A+ L
Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 181
Query: 82 N---FTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCK 138
+ P P+++ Y+ + + +FV +L+K K + + FL FG++
Sbjct: 182 HNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVY 241
Query: 139 IATDGSGQSKGYGFVQFENEESAQNAIDNFNG 170
+ D QS+G GFV++ ++E+A AID NG
Sbjct: 242 LMRDEYRQSRGCGFVKYSSKETAMAAIDGLNG 273
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 83/163 (50%), Gaps = 9/163 (5%)
Query: 104 KSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQ 162
+S +FV ++ ++ + + F GN+L + D +GQ +G FV++ + A
Sbjct: 116 RSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDAD 175
Query: 163 NAIDNFNGKLI---GDKEVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKI 219
AI + ++ G V V R D E +G +F ++V +L++ T+ ++++I
Sbjct: 176 RAIRALHNQITLPGGTGPVQV----RYADGERERIGTLEFK-LFVGSLNKQATEKEVEEI 230
Query: 220 FSEYGTITSAVVMRDVDGKSKCFGFVNFENADEAAKAVDALNG 262
F ++G + +MRD +S+ GFV + + + A A+D LNG
Sbjct: 231 FLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNG 273
>AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9208564-9214412 REVERSE LENGTH=533
Length = 533
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 76/152 (50%), Gaps = 3/152 (1%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
L+VG + + ++ F Q G V+ V + +D T Q G +V + KDA A+ L
Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 181
Query: 82 N---FTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCK 138
+ P P+++ Y+ + + +FV +L+K K + + FL FG++
Sbjct: 182 HNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVY 241
Query: 139 IATDGSGQSKGYGFVQFENEESAQNAIDNFNG 170
+ D QS+G GFV++ ++E+A AID NG
Sbjct: 242 LMRDEYRQSRGCGFVKYSSKETAMAAIDGLNG 273
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 83/163 (50%), Gaps = 9/163 (5%)
Query: 104 KSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQ 162
+S +FV ++ ++ + + F GN+L + D +GQ +G FV++ + A
Sbjct: 116 RSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDAD 175
Query: 163 NAIDNFNGKLI---GDKEVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKI 219
AI + ++ G V V R D E +G +F ++V +L++ T+ ++++I
Sbjct: 176 RAIRALHNQITLPGGTGPVQV----RYADGERERIGTLEFK-LFVGSLNKQATEKEVEEI 230
Query: 220 FSEYGTITSAVVMRDVDGKSKCFGFVNFENADEAAKAVDALNG 262
F ++G + +MRD +S+ GFV + + + A A+D LNG
Sbjct: 231 FLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNG 273
>AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding |
chr4:9207164-9214187 REVERSE LENGTH=672
Length = 672
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 76/152 (50%), Gaps = 3/152 (1%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
L+VG + + ++ F Q G V+ V + +D T Q G +V + KDA A+ L
Sbjct: 47 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 106
Query: 82 N---FTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCK 138
+ P P+++ Y+ + + +FV +L+K K + + FL FG++
Sbjct: 107 HNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVY 166
Query: 139 IATDGSGQSKGYGFVQFENEESAQNAIDNFNG 170
+ D QS+G GFV++ ++E+A AID NG
Sbjct: 167 LMRDEYRQSRGCGFVKYSSKETAMAAIDGLNG 198
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 83/163 (50%), Gaps = 9/163 (5%)
Query: 104 KSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQ 162
+S +FV ++ ++ + + F GN+L + D +GQ +G FV++ + A
Sbjct: 41 RSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDAD 100
Query: 163 NAIDNFNGKLI---GDKEVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKI 219
AI + ++ G V V R D E +G +F ++V +L++ T+ ++++I
Sbjct: 101 RAIRALHNQITLPGGTGPVQV----RYADGERERIGTLEFK-LFVGSLNKQATEKEVEEI 155
Query: 220 FSEYGTITSAVVMRDVDGKSKCFGFVNFENADEAAKAVDALNG 262
F ++G + +MRD +S+ GFV + + + A A+D LNG
Sbjct: 156 FLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNG 198
>AT4G10610.1 | Symbols: RBP37, ATRBP37, CID12 | CTC-interacting
domain 12 | chr4:6557336-6559143 FORWARD LENGTH=336
Length = 336
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 20/175 (11%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDV 80
++YV D+D ++ + QL LF GQVV R+C D L + ++ FT+ A TAL++
Sbjct: 151 TVYVSDIDQQVTEEQLAGLFIGFGQVVDCRICGD--PNSVLRFAFIEFTDEVGARTALNL 208
Query: 81 ----LNFTPLNGKPIRIMYSHRDPSV-------RKSGAANIFVKNLDKSI---DHKALYD 126
L F P+ P + + +P+ R+ A I+ N+DK + D K ++
Sbjct: 209 SGTMLGFYPVKVMPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKLTQTDIKLFFE 268
Query: 127 TFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVS 181
+ V G + ++ D ++ GFV+F ESA A+ N +G L+G + VS
Sbjct: 269 S--VCGEVYRLRLLGDYHHPTR-IGFVEFVMAESAIAAL-NCSGVLLGSLPIRVS 319
>AT1G32790.2 | Symbols: CID11 | CTC-interacting domain 11 |
chr1:11875028-11877188 REVERSE LENGTH=406
Length = 406
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 20/172 (11%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDV 80
++YV DLD ++ + QL LF GQVV R+C D L + ++ FT+ + A TAL++
Sbjct: 174 TVYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGD--PNSVLRFAFIEFTDEEGAMTALNL 231
Query: 81 ----LNFTPLNGKPIRIMYSHRDPSV-------RKSGAANIFVKNLDKSI---DHKALYD 126
L F P+ P + + +P+ R+ A I+ N+DK + D K ++
Sbjct: 232 SGTMLGFYPVKVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQSDVKIFFE 291
Query: 127 TFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEV 178
+F G + ++ D S FV+F ESA A+ N +G ++G +
Sbjct: 292 SFC--GEVYRLRLLGDYQ-HSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPI 339
>AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 107/254 (42%), Gaps = 23/254 (9%)
Query: 14 ANQPMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKD 73
A P + +Y+G + T+ + L IG+V VR+ R+ + GY +V F +
Sbjct: 86 ALPPHGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDL 145
Query: 74 AATALDVLNFTPLNGKPIRIMYS---HRDPSVRKSGAANIFVKNLDKSI---DHKALYDT 127
AA A+D LN T GK I+ + HR +F+ N+ ++ D K +
Sbjct: 146 AAEAIDTLNNTDFRGKRIKCSTTQAKHR-----------LFLGNVPRNWMESDIKKAANR 194
Query: 128 FLVFGNILTCKIATDGSGQSKGYGFVQFENE---ESAQNAIDNFNGKLIGDKEVYVSHFQ 184
I+ G+++G+ F+++ N E ++ + N + KL D +
Sbjct: 195 IGPGVQIVELPKEPQNMGRNRGFAFIEYYNHACAEYSKQKMSNPSFKL--DDNAPTVSWA 252
Query: 185 RKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKC-FG 243
+ + +Y+KNL +T + LK +F +G I V+ GK +G
Sbjct: 253 ESRSGGGGDSSASQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYG 312
Query: 244 FVNFENADEAAKAV 257
FV++ +A+
Sbjct: 313 FVHYAERTSVMRAL 326
>AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 107/254 (42%), Gaps = 23/254 (9%)
Query: 14 ANQPMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKD 73
A P + +Y+G + T+ + L IG+V VR+ R+ + GY +V F +
Sbjct: 86 ALPPHGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDL 145
Query: 74 AATALDVLNFTPLNGKPIRIMYS---HRDPSVRKSGAANIFVKNLDKSI---DHKALYDT 127
AA A+D LN T GK I+ + HR +F+ N+ ++ D K +
Sbjct: 146 AAEAIDTLNNTDFRGKRIKCSTTQAKHR-----------LFLGNVPRNWMESDIKKAANR 194
Query: 128 FLVFGNILTCKIATDGSGQSKGYGFVQFENE---ESAQNAIDNFNGKLIGDKEVYVSHFQ 184
I+ G+++G+ F+++ N E ++ + N + KL D +
Sbjct: 195 IGPGVQIVELPKEPQNMGRNRGFAFIEYYNHACAEYSKQKMSNPSFKL--DDNAPTVSWA 252
Query: 185 RKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKC-FG 243
+ + +Y+KNL +T + LK +F +G I V+ GK +G
Sbjct: 253 ESRSGGGGDSSASQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYG 312
Query: 244 FVNFENADEAAKAV 257
FV++ +A+
Sbjct: 313 FVHYAERTSVMRAL 326
>AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17426114 FORWARD LENGTH=310
Length = 310
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 89/170 (52%), Gaps = 6/170 (3%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGN--ILTCK-IATDGSGQSKGYGFVQFENEESAQNAID 166
I+V +L +D L +F I++ K I +G S+GYGFV+FE+ + A +
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 167 NFNGKLIGDK-EVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSE-YG 224
FNG + + + + ++ E G +++V +LS ++D+ L + FSE Y
Sbjct: 163 EFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYP 222
Query: 225 TITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVDALNGKKFDDKEWYVG 273
++ +A V+ D + G+SK +GFV F + +E KA+ +NG K + +G
Sbjct: 223 SVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIG 272
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 81/160 (50%), Gaps = 10/160 (6%)
Query: 21 SLYVGDLDTEINDSQLYDLF--NQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATAL 78
+++VGDL ++++ L F ++VSV+V R+ S GYG+V F + A L
Sbjct: 102 TIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVL 161
Query: 79 DVLNFT--PLNGKPIRI---MYSHRDPSVRKSGA-ANIFVKNLDKSIDHKALYDTFL-VF 131
N T P +P R+ +S + + +G +IFV +L + L++TF +
Sbjct: 162 REFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKY 221
Query: 132 GNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNFNG 170
++ K+ D +G+SKGYGFV+F +E A+ NG
Sbjct: 222 PSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNG 261
>AT4G10610.2 | Symbols: RBP37, ATRBP37 | CTC-interacting domain 12 |
chr4:6557336-6559019 FORWARD LENGTH=326
Length = 326
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 20/172 (11%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDV 80
++YV D+D ++ + QL LF GQVV R+C D L + ++ FT+ A TAL++
Sbjct: 151 TVYVSDIDQQVTEEQLAGLFIGFGQVVDCRICGD--PNSVLRFAFIEFTDEVGARTALNL 208
Query: 81 ----LNFTPLNGKPIRIMYSHRDPSV-------RKSGAANIFVKNLDKSI---DHKALYD 126
L F P+ P + + +P+ R+ A I+ N+DK + D K ++
Sbjct: 209 SGTMLGFYPVKVMPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKLTQTDIKLFFE 268
Query: 127 TFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEV 178
+ V G + ++ D ++ GFV+F ESA A+ N +G L+G +
Sbjct: 269 S--VCGEVYRLRLLGDYHHPTR-IGFVEFVMAESAIAAL-NCSGVLLGSLPI 316
>AT2G44710.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:18432902-18436629 FORWARD LENGTH=809
Length = 809
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/256 (21%), Positives = 113/256 (44%), Gaps = 18/256 (7%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
++VG LD ++ L +F +G+V VR+ ++ T++S G ++ F + A A+ L
Sbjct: 216 IFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKEL 275
Query: 82 NFTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFG--NILTCKI 139
+NGK + S + +FV N+ K +AL + +G N+ +
Sbjct: 276 KSPMINGKKCGVTASQDN--------DTLFVGNICKIWTPEALREKLKHYGVENMDDITL 327
Query: 140 ATDGS--GQSKGYGFVQFENEESAQNAIDNFNGK--LIG-DKEVYVSHFQRKQDRENAAL 194
D + ++GY F++F + A +A K + G +K VS D E+ +
Sbjct: 328 VEDSNNVNMNRGYAFLEFSSRSDAMDAHKRLVKKDVMFGVEKPAKVSFTDSFLDLEDEIM 387
Query: 195 GGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDV-DGKSKCFGFVNFENADEA 253
+ +++ L + ++ ++ + YG + + R++ + K FGFV F+ + A
Sbjct: 388 --AQVKTIFIDGLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRKDFGFVTFDTHEAA 445
Query: 254 AKAVDALNGKKFDDKE 269
+N + + E
Sbjct: 446 VSCAKFINNSELGEGE 461
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 89/174 (51%), Gaps = 7/174 (4%)
Query: 20 TSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD 79
T LY G+L ++ + L + V V + T QS G+ +V +N +D +D
Sbjct: 85 TKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIID 144
Query: 80 VLNFTPLNGKPIRIMYS-----HRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNI 134
L+ T G+ +++ ++ +++P + +FV NL ++ ++L F G++
Sbjct: 145 NLDGTEYLGRALKVNFADKPKPNKEP-LYPETEHKLFVGNLSWTVTSESLAGAFRECGDV 203
Query: 135 LTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQ 187
+ ++ DG +G+S+GYGFV + ++ + A+++ +G + + + V+ Q K+
Sbjct: 204 VGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGKK 257
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 3/161 (1%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAIDNF 168
++ NL ++D L F N ++ + +GQS+G+ FV N E IDN
Sbjct: 87 LYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNL 146
Query: 169 NGKLIGDKEVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITS 228
+G + + V +F K L + ++V NLS +T + L F E G +
Sbjct: 147 DGTEYLGRALKV-NFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVG 205
Query: 229 AVVMRDVD-GKSKCFGFVNFENADEAAKAVDALNGKKFDDK 268
A V+ D D G+S+ +GFV + + E A+++L+G + + +
Sbjct: 206 ARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGR 246
>AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495102 FORWARD LENGTH=495
Length = 495
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 86/175 (49%), Gaps = 15/175 (8%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAID-- 166
+F+ + + + L + F FG ++ I D +G+++G+GFV F + A+ I
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEK 67
Query: 167 -NFNGKLIGDKEVYVSHFQRKQDRENAAL------GGGKFNNVYVKNLSEAMTDDDLKKI 219
N +G+L+ K+ Q +R N++ G G+ ++V L ++T+ D K
Sbjct: 68 HNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTY 127
Query: 220 FSEYGTITSAVVMRDVDG-KSKCFGFVNFENADEAAKAV----DALNGKKFDDKE 269
F ++GT T VVM D + + + FGF+ +++ + K + LNGK + K
Sbjct: 128 FEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKR 182
>AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495052 FORWARD LENGTH=494
Length = 494
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 86/175 (49%), Gaps = 15/175 (8%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAID-- 166
+F+ + + + L + F FG ++ I D +G+++G+GFV F + A+ I
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEK 67
Query: 167 -NFNGKLIGDKEVYVSHFQRKQDRENAAL------GGGKFNNVYVKNLSEAMTDDDLKKI 219
N +G+L+ K+ Q +R N++ G G+ ++V L ++T+ D K
Sbjct: 68 HNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTY 127
Query: 220 FSEYGTITSAVVMRDVDG-KSKCFGFVNFENADEAAKAV----DALNGKKFDDKE 269
F ++GT T VVM D + + + FGF+ +++ + K + LNGK + K
Sbjct: 128 FEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKR 182
>AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:6067394-6069098 REVERSE LENGTH=369
Length = 369
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 87/188 (46%), Gaps = 6/188 (3%)
Query: 5 HETDAVAQEANQPMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYG 64
H D ++ P L+VG + E + F + G+VV + D T G+G
Sbjct: 51 HSVDHRHSSSSMSSPGKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFG 110
Query: 65 YVNFTNPKDAATALD---VLNFTPLNGKPIRIMYSHRDPSVRK-SGAANIFVKNLDKSID 120
+V F + A L+ V++ ++ K + +D ++ S IFV L ++
Sbjct: 111 FVTFADSAVAEKVLEEDHVIDDRKVDLKRT-LPRGDKDTDIKAVSKTRKIFVGGLPPLLE 169
Query: 121 HKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVY 179
L + F V+G+I+ +I D +G+S+G+GFV F+ E+S + +GDK+V
Sbjct: 170 EDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVE 229
Query: 180 VSHFQRKQ 187
+ + K+
Sbjct: 230 IKRAEPKR 237
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 86/195 (44%), Gaps = 14/195 (7%)
Query: 68 FTNPKDAATALDVLNFTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDT 127
F + ++ A+D G ++ HR S S +FV + + +
Sbjct: 32 FDDRRNGGAAVDT------GGIQMKHSVDHRHSSSSMSSPGKLFVGGVSWETTAETFANY 85
Query: 128 FLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRK 186
F FG ++ I TD +G +G+GFV F + A+ ++ +I D++V + +
Sbjct: 86 FGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE--DHVIDDRKVDLKRTLPR 143
Query: 187 QDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVD-GKSKCFGFV 245
D++ K ++V L + +D+LK F YG I +M D G+S+ FGFV
Sbjct: 144 GDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFV 203
Query: 246 NFENADEAAKAVDAL 260
F+ D +VD L
Sbjct: 204 TFQTED----SVDRL 214
>AT5G24440.1 | Symbols: CID13 | CTC-interacting domain 13 |
chr5:8345402-8347776 REVERSE LENGTH=320
Length = 320
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 88/175 (50%), Gaps = 20/175 (11%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDV 80
++YV D+D ++ + QL LF GQVV R+C D + L + ++ FT+ + A +AL
Sbjct: 138 TVYVSDIDNQVTEEQLASLFLSCGQVVDCRMCGDY--KSILRFAFIEFTDAEGARSALRK 195
Query: 81 LNFTPLNGKPIRIMYSHR-----DPS--------VRKSGAANIFVKNLDKSIDHKALYDT 127
+ T PIR+ S +PS + K G ++ N+DK + L +
Sbjct: 196 -SGTMFGSHPIRVFMSKTAIAPVNPSFLPQSKDELEKCGKT-VYCTNIDKEVTKMELENF 253
Query: 128 F-LVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVS 181
F V G + ++ D Q++ FV+F+ ESA +A+ N +G ++G+ + VS
Sbjct: 254 FKTVCGEVHHLRLLGDFYHQTR-IAFVEFKLAESAISAL-NCSGVVLGELPIRVS 306
>AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 84/171 (49%), Gaps = 17/171 (9%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAIDN- 167
+F+ + D + L D F +G+++ I D +G+++G+GF+ F + ++ I +
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 168 --FNGKLIGDKEVYVSHFQRKQDRENAAL--------GGGKFNNVYVKNLSEAMTDDDLK 217
+G+ + K+ Q+ R + + GGG+ ++V L ++T+++ K
Sbjct: 68 HIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFK 127
Query: 218 KIFSEYGTITSAVVMRDVDG-KSKCFGFVNFENADEA----AKAVDALNGK 263
F ++GTI VVM D + + + FGF+ F++ D K LNGK
Sbjct: 128 NYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGK 178
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 81/175 (46%), Gaps = 25/175 (14%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
L++G + + ++ +L D F+ G VV + RD AT ++ G+G++ F +P + ++
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP--CVSERVIM 65
Query: 82 NFTPLNGKPI-----------RIMYSHRDP-----SVRKSGAAN--IFVKNLDKSIDHKA 123
+ ++G+ + +++ H P V G IFV L SI +
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 124 LYDTFLVFGNILTCKIATDGSGQ-SKGYGFVQFENEESAQNAIDN----FNGKLI 173
+ F FG I + D + Q +G+GF+ F+++++ + NGKL+
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLV 180
>AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 84/171 (49%), Gaps = 17/171 (9%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAIDN- 167
+F+ + D + L D F +G+++ I D +G+++G+GF+ F + ++ I +
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 168 --FNGKLIGDKEVYVSHFQRKQDRENAAL--------GGGKFNNVYVKNLSEAMTDDDLK 217
+G+ + K+ Q+ R + + GGG+ ++V L ++T+++ K
Sbjct: 68 HIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFK 127
Query: 218 KIFSEYGTITSAVVMRDVDG-KSKCFGFVNFENADEA----AKAVDALNGK 263
F ++GTI VVM D + + + FGF+ F++ D K LNGK
Sbjct: 128 NYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGK 178
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 81/175 (46%), Gaps = 25/175 (14%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
L++G + + ++ +L D F+ G VV + RD AT ++ G+G++ F +P + ++
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP--CVSERVIM 65
Query: 82 NFTPLNGKPI-----------RIMYSHRDP-----SVRKSGAAN--IFVKNLDKSIDHKA 123
+ ++G+ + +++ H P V G IFV L SI +
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 124 LYDTFLVFGNILTCKIATDGSGQ-SKGYGFVQFENEESAQNAIDN----FNGKLI 173
+ F FG I + D + Q +G+GF+ F+++++ + NGKL+
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLV 180
>AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 84/171 (49%), Gaps = 17/171 (9%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAIDN- 167
+F+ + D + L D F +G+++ I D +G+++G+GF+ F + ++ I +
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 168 --FNGKLIGDKEVYVSHFQRKQDRENAAL--------GGGKFNNVYVKNLSEAMTDDDLK 217
+G+ + K+ Q+ R + + GGG+ ++V L ++T+++ K
Sbjct: 68 HIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFK 127
Query: 218 KIFSEYGTITSAVVMRDVDG-KSKCFGFVNFENADEA----AKAVDALNGK 263
F ++GTI VVM D + + + FGF+ F++ D K LNGK
Sbjct: 128 NYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGK 178
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 81/175 (46%), Gaps = 25/175 (14%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
L++G + + ++ +L D F+ G VV + RD AT ++ G+G++ F +P + ++
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP--CVSERVIM 65
Query: 82 NFTPLNGKPI-----------RIMYSHRDP-----SVRKSGAAN--IFVKNLDKSIDHKA 123
+ ++G+ + +++ H P V G IFV L SI +
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 124 LYDTFLVFGNILTCKIATDGSGQ-SKGYGFVQFENEESAQNAIDN----FNGKLI 173
+ F FG I + D + Q +G+GF+ F+++++ + NGKL+
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLV 180
>AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 84/171 (49%), Gaps = 17/171 (9%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAIDN- 167
+F+ + D + L D F +G+++ I D +G+++G+GF+ F + ++ I +
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 168 --FNGKLIGDKEVYVSHFQRKQDRENAAL--------GGGKFNNVYVKNLSEAMTDDDLK 217
+G+ + K+ Q+ R + + GGG+ ++V L ++T+++ K
Sbjct: 68 HIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFK 127
Query: 218 KIFSEYGTITSAVVMRDVDG-KSKCFGFVNFENADEA----AKAVDALNGK 263
F ++GTI VVM D + + + FGF+ F++ D K LNGK
Sbjct: 128 NYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGK 178
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 81/175 (46%), Gaps = 25/175 (14%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
L++G + + ++ +L D F+ G VV + RD AT ++ G+G++ F +P + ++
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP--CVSERVIM 65
Query: 82 NFTPLNGKPI-----------RIMYSHRDP-----SVRKSGAAN--IFVKNLDKSIDHKA 123
+ ++G+ + +++ H P V G IFV L SI +
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 124 LYDTFLVFGNILTCKIATDGSGQ-SKGYGFVQFENEESAQNAIDN----FNGKLI 173
+ F FG I + D + Q +G+GF+ F+++++ + NGKL+
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLV 180
>AT5G09880.1 | Symbols: | Splicing factor, CC1-like |
chr5:3081646-3085179 REVERSE LENGTH=527
Length = 527
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 84/173 (48%), Gaps = 13/173 (7%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDV 80
+++ + + + +Y+ F++ G+V VR+ D +++S G GY+ F + A+
Sbjct: 169 TVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-A 227
Query: 81 LNFTPLNGKPIRIMYSHRDPSVRKSGAANI----------FVKNLDKSIDHKALYDTFLV 130
L+ G+P+ + S + ++ +S + + +V NL ++ L F
Sbjct: 228 LSGQLFLGQPVMVKPSEAEKNLAQSNSTTVGGTGPADRKLYVGNLHFNMSELQLRQIFEA 287
Query: 131 FGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNFNGKL-IGDKEVYVS 181
FG + ++ D +GQ KG+GF+QF E ++ A NGKL I + + VS
Sbjct: 288 FGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGRTIKVS 340
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 8/161 (4%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAIDNF 168
+F + + +Y+ F G + ++ D S +SKG G+++F + S AI
Sbjct: 170 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-AL 228
Query: 169 NGKLIGDKEVYV--SHFQRKQDRENAALGGGKF---NNVYVKNLSEAMTDDDLKKIFSEY 223
+G+L + V V S ++ + N+ GG +YV NL M++ L++IF +
Sbjct: 229 SGQLFLGQPVMVKPSEAEKNLAQSNSTTVGGTGPADRKLYVGNLHFNMSELQLRQIFEAF 288
Query: 224 GTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVDALNGK 263
G + + D + G+ K FGF+ F + + A ALNGK
Sbjct: 289 GPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGK 329
>AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 88/175 (50%), Gaps = 13/175 (7%)
Query: 107 AANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAI 165
+ +F+ + L D F FG +L I D +G+++G+GFV F + A+ +
Sbjct: 5 SCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVV 64
Query: 166 ---DNFNGKLIGDKEVYVSHFQRKQDRENAALGG--GKFNN--VYVKNLSEAMTDDDLKK 218
+GK++ K+ ++ N++L G G N+ ++V L+ ++T+ + KK
Sbjct: 65 LLKHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKK 124
Query: 219 IFSEYGTITSAVVMRD-VDGKSKCFGFVNFENADEAAKAVDA----LNGKKFDDK 268
F+++G IT VVM D + + FGF+++++ + K + LNGK + K
Sbjct: 125 YFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVK 179
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 84/171 (49%), Gaps = 21/171 (12%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
L++G + E ++ +L D F+ G+V+ + +D AT ++ G+G+V F +P A + +
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK 67
Query: 82 NFTPLNGKPI----------RIMYSHRDPSVRKS-GAAN---IFVKNLDKSIDHKALYDT 127
+ ++GK + ++++ + S++ S G +N IFV L S+
Sbjct: 68 HI--IDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKY 125
Query: 128 FLVFGNILTCKIATDGSGQ-SKGYGFVQFENEESA----QNAIDNFNGKLI 173
F FG I + D Q +G+GF+ +++EE+ Q NGK++
Sbjct: 126 FAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMV 176
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 78/162 (48%), Gaps = 15/162 (9%)
Query: 202 VYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRD-VDGKSKCFGFVNFENADEAAKAV--- 257
+++ +S ++D L+ F +G + AV+M+D G+++ FGFV F + + A + V
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK 67
Query: 258 DALNGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDE 317
++GK + K+ + S+Q + +++ L +V +
Sbjct: 68 HIIDGKIVEAKK-------AVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEA 120
Query: 318 KLRELFSEFGTITSCKIMRDPHGV--SRGSGFVAFSTPEEAT 357
+ ++ F++FG IT +M D H RG GF+++ + EEA
Sbjct: 121 EFKKYFAQFGMITDVVVMYD-HRTQRPRGFGFISYDS-EEAV 160
>AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 88/175 (50%), Gaps = 13/175 (7%)
Query: 107 AANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAI 165
+ +F+ + L D F FG +L I D +G+++G+GFV F + A+ +
Sbjct: 5 SCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVV 64
Query: 166 ---DNFNGKLIGDKEVYVSHFQRKQDRENAALGG--GKFNN--VYVKNLSEAMTDDDLKK 218
+GK++ K+ ++ N++L G G N+ ++V L+ ++T+ + KK
Sbjct: 65 LLKHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKK 124
Query: 219 IFSEYGTITSAVVMRD-VDGKSKCFGFVNFENADEAAKAVDA----LNGKKFDDK 268
F+++G IT VVM D + + FGF+++++ + K + LNGK + K
Sbjct: 125 YFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVK 179
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 84/171 (49%), Gaps = 21/171 (12%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
L++G + E ++ +L D F+ G+V+ + +D AT ++ G+G+V F +P A + +
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK 67
Query: 82 NFTPLNGKPI----------RIMYSHRDPSVRKS-GAAN---IFVKNLDKSIDHKALYDT 127
+ ++GK + ++++ + S++ S G +N IFV L S+
Sbjct: 68 HI--IDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKY 125
Query: 128 FLVFGNILTCKIATDGSGQ-SKGYGFVQFENEESA----QNAIDNFNGKLI 173
F FG I + D Q +G+GF+ +++EE+ Q NGK++
Sbjct: 126 FAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMV 176
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 78/162 (48%), Gaps = 15/162 (9%)
Query: 202 VYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRD-VDGKSKCFGFVNFENADEAAKAV--- 257
+++ +S ++D L+ F +G + AV+M+D G+++ FGFV F + + A + V
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK 67
Query: 258 DALNGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDE 317
++GK + K+ + S+Q + +++ L +V +
Sbjct: 68 HIIDGKIVEAKK-------AVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEA 120
Query: 318 KLRELFSEFGTITSCKIMRDPHGV--SRGSGFVAFSTPEEAT 357
+ ++ F++FG IT +M D H RG GF+++ + EEA
Sbjct: 121 EFKKYFAQFGMITDVVVMYD-HRTQRPRGFGFISYDS-EEAV 160
>AT3G49390.2 | Symbols: CID10 | CTC-interacting domain 10 |
chr3:18314901-18317658 REVERSE LENGTH=353
Length = 353
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 25/187 (13%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD- 79
++YV D+D ++ + L +F GQVV RVC D L + ++ FTN + A AL
Sbjct: 170 TVYVSDIDQQVTEENLAGVFINCGQVVDCRVCGD--PNSVLRFAFIEFTNEEGARAALSM 227
Query: 80 ---VLNFTPLNGKPIRIMYSHRDPSV-------RKSGAANIFVKNLDKSIDHKALYDTF- 128
VL F PL P + + +P+ R+ ++ N+DK I L F
Sbjct: 228 SGTVLGFYPLKVLPSKTAIAPVNPTFLPRSEDEREMCVRTVYCTNIDKRITQIDLKGFFE 287
Query: 129 LVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVS------- 181
++ G + ++ D Q++ FV+F ESA A+ + +G ++G + VS
Sbjct: 288 MLCGEVHRLRLG-DYHHQTR-IAFVEFAMAESAIAAL-HCSGIVLGALPIRVSPSKTPVR 344
Query: 182 -HFQRKQ 187
HF R +
Sbjct: 345 PHFPRAE 351
>AT3G49390.1 | Symbols: CID10 | CTC-interacting domain 10 |
chr3:18314901-18317658 REVERSE LENGTH=353
Length = 353
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 25/187 (13%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD- 79
++YV D+D ++ + L +F GQVV RVC D L + ++ FTN + A AL
Sbjct: 170 TVYVSDIDQQVTEENLAGVFINCGQVVDCRVCGD--PNSVLRFAFIEFTNEEGARAALSM 227
Query: 80 ---VLNFTPLNGKPIRIMYSHRDPSV-------RKSGAANIFVKNLDKSIDHKALYDTF- 128
VL F PL P + + +P+ R+ ++ N+DK I L F
Sbjct: 228 SGTVLGFYPLKVLPSKTAIAPVNPTFLPRSEDEREMCVRTVYCTNIDKRITQIDLKGFFE 287
Query: 129 LVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVS------- 181
++ G + ++ D Q++ FV+F ESA A+ + +G ++G + VS
Sbjct: 288 MLCGEVHRLRLG-DYHHQTR-IAFVEFAMAESAIAAL-HCSGIVLGALPIRVSPSKTPVR 344
Query: 182 -HFQRKQ 187
HF R +
Sbjct: 345 PHFPRAE 351
>AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6744029-6746133 FORWARD LENGTH=337
Length = 337
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 49/87 (56%)
Query: 109 NIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNF 168
+++V L I +A+ F ++G++LT KI D S + K YGFV F N SA +AI++
Sbjct: 8 SVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDM 67
Query: 169 NGKLIGDKEVYVSHFQRKQDRENAALG 195
+GK IG + V V+ + R N G
Sbjct: 68 DGKSIGGRAVRVNDVTTRGGRMNPGPG 94
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 41/66 (62%)
Query: 200 NNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFVNFENADEAAKAVDA 259
N+VYV L +T++ ++++FS YG++ + ++ D + KC+GFV F N A A++
Sbjct: 7 NSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIED 66
Query: 260 LNGKKF 265
++GK
Sbjct: 67 MDGKSI 72
>AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8022601-8023162 FORWARD LENGTH=87
Length = 87
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 202 VYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRD-VDGKSKCFGFVNFENADEAAKAVDAL 260
VYV NLS TDD L++ FS YG + A+VMRD +S+ FGFV + + EA AV +
Sbjct: 5 VYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGM 64
Query: 261 NGKKFDDKEWYV 272
+GK+ + + V
Sbjct: 65 DGKELNGRRVSV 76
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 18 MPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATA 77
M T +YVG+L D L + F+ G VV V RD T +S G+G+V +++ +A A
Sbjct: 1 MATRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAA 60
Query: 78 LDVLNFTPLNGKPIRI 93
+ ++ LNG+ + +
Sbjct: 61 VSGMDGKELNGRRVSV 76
>AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376612-1379275 REVERSE
LENGTH=441
Length = 441
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 4/85 (4%)
Query: 108 ANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAID 166
AN+F+ N+ + + L F FG +L+ K+ D +G SK +GFV ++++ +AQNAID
Sbjct: 349 ANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAID 408
Query: 167 NFNGKLIGDKEVYVSHFQRKQDREN 191
NG+ +G K++ V Q K+D N
Sbjct: 409 MMNGRHLGGKKLKV---QLKRDSNN 430
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 201 NVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRD-VDGKSKCFGFVNFENADEAAKAVDA 259
N+++ N+ D +L F +G + SA V D G SKCFGFV++++ A A+D
Sbjct: 350 NLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDM 409
Query: 260 LNGKKFDDKEWYV 272
+NG+ K+ V
Sbjct: 410 MNGRHLGGKKLKV 422
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 72/151 (47%), Gaps = 2/151 (1%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
L+VG + +++SQL LF + V V + +D T+ S G ++ + ++A ++
Sbjct: 20 LFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNAC 79
Query: 82 -NFTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIA 140
N L G + + D + + +FV L K++ + F +G I +I
Sbjct: 80 HNKKTLPGANSLLQVKYADGELERL-EHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQIL 138
Query: 141 TDGSGQSKGYGFVQFENEESAQNAIDNFNGK 171
SKG F+++E +E A +A+++ NGK
Sbjct: 139 RGAQQTSKGCAFLKYETKEQAVSAMESINGK 169
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 10/160 (6%)
Query: 107 AANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAI 165
+ +FV + K + L F F + I D + S+G F+ + E A +
Sbjct: 17 SVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLV 76
Query: 166 DNFNGK--LIGDKEVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEY 223
+ + K L G + + D E L F + KN+SEA +++ +FS+Y
Sbjct: 77 NACHNKKTLPGANSLLQVKYA---DGELERLEHKLFVGMLPKNVSEA----EVQSLFSKY 129
Query: 224 GTITSAVVMRDVDGKSKCFGFVNFENADEAAKAVDALNGK 263
GTI ++R SK F+ +E ++A A++++NGK
Sbjct: 130 GTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESINGK 169
>AT4G12640.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:7462697-7467630 FORWARD LENGTH=823
Length = 823
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 84/211 (39%), Gaps = 58/211 (27%)
Query: 17 PMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAAT 76
P L+VG+L I + +L D F + G++ S LA Q Y +VNF + +DA
Sbjct: 20 PPSRHLWVGNLPHGILERELADRFLRFGELES------LAFQPGRSYAFVNFNHDEDAFA 73
Query: 77 ALDVLNFTPLNGKPIRIMYS--------------HRDPSVRKSGAANIFV---------- 112
A++ L PL+G P+RI ++ +R R + + FV
Sbjct: 74 AIESLQGFPLSGNPLRIEFAKAEKSSTGSRTDDIYRHDEQRSAARGSSFVQRDSRMRYES 133
Query: 113 -----------KNLDKS------------IDHKALYDTFLVFGNILTCKIATDGSGQSKG 149
+N + S +D L + F FG I + +
Sbjct: 134 PDTYSKSKMNDRNAEPSEVLYIGFPASLKVDDALLRNVFSSFGEITKVTVFP-----GRS 188
Query: 150 YGFVQFENEESAQNAIDNFNGKLIGDKEVYV 180
Y FVQF N +A A ++ GKL G+ V++
Sbjct: 189 YAFVQFRNLMAACKAKESLQGKLFGNPRVHI 219
>AT3G18610.1 | Symbols: PARLL1, ATNUC-L2, NUC-L2 | nucleolin like 2
| chr3:6404270-6407822 REVERSE LENGTH=636
Length = 636
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 80/158 (50%), Gaps = 11/158 (6%)
Query: 106 GAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAI 165
G+ +F NL I + + F G ++ ++++ G KGYG ++F + E AQ A+
Sbjct: 382 GSKTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIEFASPEEAQKAL 441
Query: 166 DNFNGKLIGDKEVYVSHFQRKQDRENAALG----GGKFNNVYVKNLSEAMTDDDLKKI-- 219
+ NGKL+ ++V + + N+ G G + +YV+ S ++ +D++KK
Sbjct: 442 E-MNGKLLLGRDVRLDLANERGTPRNSNPGRKGEGSQSRTIYVRGFSSSLGEDEIKKELR 500
Query: 220 --FSEYGTITSAVVMRDVD-GKSKCFGFVNFENA-DEA 253
FS+ G +T V D + G S+ F +++ + DEA
Sbjct: 501 SHFSKCGEVTRVHVPTDRETGASRGFAYIDLTSGFDEA 538
>AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2555034-2555829 REVERSE LENGTH=143
Length = 143
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 45/75 (60%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
L++G L +++ L D F+ G+V VR+ D + +S G+G+V+F DA +A D +
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAM 102
Query: 82 NFTPLNGKPIRIMYS 96
+ L G+P+RI ++
Sbjct: 103 DGKGLLGRPLRISFA 117
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 109 NIFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAIDN 167
+F+ L S+D ++L D F FG + +IA D GSG+S+G+GFV F E A +A D
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDA 101
Query: 168 FNGKLIGDKEVYVS 181
+GK + + + +S
Sbjct: 102 MDGKGLLGRPLRIS 115
>AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16225483-16227423 FORWARD LENGTH=423
Length = 423
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 20/169 (11%)
Query: 188 DRENAALGGG--KFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVD-GKSKCFGF 244
D+ GGG ++V L+ T + K F +YG IT +V+M+D G+ + FGF
Sbjct: 28 DKSQPHSGGGVDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGF 87
Query: 245 VNFENADEAAKAVDALNGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGAN 304
V + ++ K + D +G SM + + ++
Sbjct: 88 VTYADSSVVDKVIQ--------DNHIIIGKQVEIKRTIPRG------SM--SSNDFKTKK 131
Query: 305 LYLKNLDDNVDDEKLRELFSEFGTITSCKIMRD-PHGVSRGSGFVAFST 352
+++ + +VDD++ +E F +FG + +IMRD G SRG GFV + +
Sbjct: 132 IFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYES 180
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 73/147 (49%), Gaps = 17/147 (11%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD-- 79
++VG L E ++ F + G++ + +D T Q G+G+V + + ++ +D
Sbjct: 44 IFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYAD----SSVVDKV 99
Query: 80 VLNFTPLNGKPIRIMYSHRDPSVRKSGAAN------IFVKNLDKSIDHKALYDTFLVFGN 133
+ + + GK + I + R S ++N IFV + S+D + F+ FG
Sbjct: 100 IQDNHIIIGKQVEIKRT----IPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGE 155
Query: 134 ILTCKIATDGS-GQSKGYGFVQFENEE 159
+ +I D S G+S+G+GFV +E+E+
Sbjct: 156 LKEHQIMRDHSTGRSRGFGFVTYESED 182
>AT5G07290.1 | Symbols: AML4, ML4 | MEI2-like 4 |
chr5:2294248-2298491 FORWARD LENGTH=907
Length = 907
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 82/154 (53%), Gaps = 14/154 (9%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFN 169
+FV+N+D SI+ L F FG++ A G+++G+ V + + +AQ A +
Sbjct: 213 LFVRNVDSSIEDCELGVLFKQFGDVRALHTA----GKNRGFIMVSYYDIRAAQKAARALH 268
Query: 170 GKLIGDKEVYVSH-FQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITS 228
G+L+ +++ + + ++ +EN++ G ++V NL ++++++L IFS YG I
Sbjct: 269 GRLLRGRKLDIRYSIPKENPKENSSEGA-----LWVNNLDSSISNEELHGIFSSYGEIRE 323
Query: 229 AVVMRDVDGKSKCFGFVNFENADEAAKAVDALNG 262
V R + S+ ++ F + +A A+ LNG
Sbjct: 324 --VRRTMHENSQV--YIEFFDVRKAKVALQGLNG 353
>AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:1212065-1213795 REVERSE LENGTH=245
Length = 245
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
L+ GDL E+ND L F + +V RD T ++ GYG+V+F NP D A AL +
Sbjct: 139 LFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKEM 198
Query: 82 NFTPLNGKPIRIMYSH------RDPSVRKSGAANIFVKNLDKSIDHK 122
N + +PI++ S ++ + R+ +N K + KSI HK
Sbjct: 199 NGKYVGNRPIKLRKSSWKERTDQEAAERQKHHSNKKQKTVKKSILHK 245
>AT3G10845.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:3394009-3397526 FORWARD LENGTH=423
Length = 423
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 111/264 (42%), Gaps = 55/264 (20%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
L+V +L + ++ +G+VVSVR+ + + +G +V F + +A L+
Sbjct: 129 LFVANLSPQTKILDIFGFCQDVGEVVSVRLIAN-HEDKPVGCAFVEFLSANEAKKVLENK 187
Query: 82 NFTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIAT 141
N +G I +M H G F ++ ++
Sbjct: 188 NGEYFHGHKIILMRGH--------GETPDFAEH-----------------------RLIV 216
Query: 142 DGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVY-----VSHFQRK-------QDR 189
+ +G+ G GFV+F + + A+NA++ G+ + D E++ ++ F Q+R
Sbjct: 217 NHTGKHVGKGFVEFASAKEAENALEKKKGEYLQDGEIFLKAANIAPFPPPKYEDYLGQER 276
Query: 190 ENAALGG----------GKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKS 239
+ AA+ G + ++V NL + + F ++ + +++ D GK
Sbjct: 277 DEAAVEGLAETPYFVEEARKKTLFVTNLPPRTSIQRMLYFFQDFEVVRVRLIV-DQSGKH 335
Query: 240 KCFGFVNFENADEAAKAVDALNGK 263
G+ F +A+EA KA++ NGK
Sbjct: 336 MGCGYFEFASANEAEKALEQRNGK 359
>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=144
Length = 144
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%)
Query: 18 MPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATA 77
M T L++G L +D+ L D F G VV +V D T +S G+G+VNF + A A
Sbjct: 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAA 92
Query: 78 LDVLNFTPLNGKPIRIMYSHRDPSVRKS 105
+ ++ LNG+ IR+ ++ PS ++
Sbjct: 93 ISEMDGKELNGRHIRVNPANDRPSAPRA 120
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNF 168
+F+ L D +L D F FG+++ K+ D +G+S+G+GFV F +E +A AI
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 169 NGKLIGDKEVYV 180
+GK + + + V
Sbjct: 97 DGKELNGRHIRV 108
>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=153
Length = 153
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%)
Query: 18 MPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATA 77
M T L++G L +D+ L D F G VV +V D T +S G+G+VNF + A A
Sbjct: 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAA 92
Query: 78 LDVLNFTPLNGKPIRIMYSHRDPSVRKS 105
+ ++ LNG+ IR+ ++ PS ++
Sbjct: 93 ISEMDGKELNGRHIRVNPANDRPSAPRA 120
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNF 168
+F+ L D +L D F FG+++ K+ D +G+S+G+GFV F +E +A AI
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 169 NGKLIGDKEVYV 180
+GK + + + V
Sbjct: 97 DGKELNGRHIRV 108
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
LENGTH=158
Length = 158
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%)
Query: 18 MPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATA 77
M T L++G L +D+ L D F G VV +V D T +S G+G+VNF + A A
Sbjct: 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAA 92
Query: 78 LDVLNFTPLNGKPIRIMYSHRDPSVRKS 105
+ ++ LNG+ IR+ ++ PS ++
Sbjct: 93 ISEMDGKELNGRHIRVNPANDRPSAPRA 120
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNF 168
+F+ L D +L D F FG+++ K+ D +G+S+G+GFV F +E +A AI
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 169 NGKLIGDKEVYV 180
+GK + + + V
Sbjct: 97 DGKELNGRHIRV 108
>AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256621 FORWARD LENGTH=358
Length = 358
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 83/186 (44%), Gaps = 17/186 (9%)
Query: 12 QEANQPMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNP 71
Q + P +++G L + ++ F + G++ + RD T Q G+G++ F +P
Sbjct: 11 QSGDGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADP 70
Query: 72 KDAATALDVLNFTPLNGKPIRIMYSHRDPSVRKSGAAN---------IFVKNLDKSIDHK 122
++ + +NGK + I ++ K N IFV + ++
Sbjct: 71 SVVDKVIEDTHV--INGKQVEIKR-----TIPKGAGGNQSKDIKTKKIFVGGIPSTVTED 123
Query: 123 ALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVS 181
L D F +GN++ ++ D + +S+G+GFV F++EE + N + D +V +
Sbjct: 124 ELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIK 183
Query: 182 HFQRKQ 187
+ K+
Sbjct: 184 KAEPKK 189
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 78/174 (44%), Gaps = 42/174 (24%)
Query: 196 GGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAA 254
G +++ L + T+ K F +YG IT +V+MRD G+ + FGF+ F +
Sbjct: 15 GASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVD 74
Query: 255 KAVD---ALNGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGAN------- 304
K ++ +NGK+ + ++ T+ K G N
Sbjct: 75 KVIEDTHVINGKQVE--------------------------IKRTIPKGAGGNQSKDIKT 108
Query: 305 --LYLKNLDDNVDDEKLRELFSEFGTITSCKIMRDPHGV--SRGSGFVAFSTPE 354
+++ + V +++L++ F+++G + +++RD H SRG GFV F + E
Sbjct: 109 KKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRD-HETNRSRGFGFVIFDSEE 161
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 11/150 (7%)
Query: 107 AANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAI 165
IF+ L K + F +G I I D +GQ +G+GF+ F + I
Sbjct: 18 PGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVI 77
Query: 166 DN---FNGKLIGDKEVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSE 222
++ NGK + K Q ++ K ++V + +T+D+LK F++
Sbjct: 78 EDTHVINGKQVEIKRTIPKGAGGNQSKDI------KTKKIFVGGIPSTVTEDELKDFFAK 131
Query: 223 YGTITSAVVMRDVD-GKSKCFGFVNFENAD 251
YG + V+RD + +S+ FGFV F++ +
Sbjct: 132 YGNVVEHQVIRDHETNRSRGFGFVIFDSEE 161
>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=129
Length = 129
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%)
Query: 18 MPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATA 77
M T L++G L +D+ L D F G VV +V D T +S G+G+VNF + A A
Sbjct: 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAA 92
Query: 78 LDVLNFTPLNGKPIRIMYSHRDPS 101
+ ++ LNG+ IR+ ++ PS
Sbjct: 93 ISEMDGKELNGRHIRVNPANDRPS 116
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNF 168
+F+ L D +L D F FG+++ K+ D +G+S+G+GFV F +E +A AI
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 169 NGKLIGDKEVYV 180
+GK + + + V
Sbjct: 97 DGKELNGRHIRV 108
>AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14156085-14157435 FORWARD LENGTH=404
Length = 404
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 27/182 (14%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAIDNF 168
+F+ + D L + F FG +L + + +G+ +G+GFV F + + +
Sbjct: 8 LFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQDK 67
Query: 169 NGKLIGDKEVYVSHFQRKQDRENAALGG--GKFN--------------NVYVKNLSEAMT 212
+ I +++V V +R RE + G G FN ++V L A+T
Sbjct: 68 H--HIDNRDVDV---KRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALT 122
Query: 213 DDDLKKIFSEYGTITSAVVMRD-VDGKSKCFGFVNFENADEA----AKAVDALNGKKFDD 267
D+ + F YG ++ AV+M D + + FGFV+F++ D K LNGK+ +
Sbjct: 123 SDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEV 182
Query: 268 KE 269
K
Sbjct: 183 KR 184
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 21/173 (12%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATAL-DV 80
L++G + + +++ L + F+ G+V+ V V R+ AT + G+G+V F++P L D
Sbjct: 8 LFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQDK 67
Query: 81 LNFTPLNGKPIRIMYSHRDPSVRKSGAAN---------------IFVKNLDKSIDHKALY 125
+ + R M +SG N IFV L ++
Sbjct: 68 HHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDEFR 127
Query: 126 DTFLVFGNILTCKIATDGSGQ-SKGYGFVQFENEESA----QNAIDNFNGKLI 173
F +G + I D + Q +G+GFV F++E+S + NGK +
Sbjct: 128 AYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQV 180
>AT3G14450.1 | Symbols: CID9 | CTC-interacting domain 9 |
chr3:4849788-4851601 FORWARD LENGTH=327
Length = 327
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 79/174 (45%), Gaps = 18/174 (10%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDV 80
++YV D+D + + L LF+ GQVV R+C D L + +V F + + A AL
Sbjct: 142 TVYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGD--PHSVLRFAFVEFADDQGAHEALS- 198
Query: 81 LNFTPLNGKPIRIMYSH------------RDPSVRKSGAANIFVKNLDKSIDHKALYDTF 128
L T L P+R++ S R R+ I+ N+DK + + + F
Sbjct: 199 LGGTMLGFYPVRVLPSKTAILPVNPTFLPRSEDEREMCTRTIYCTNIDKKVSQADVRNFF 258
Query: 129 -LVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVS 181
G + ++ D S FV+F +SA +A+ N +G ++G + + VS
Sbjct: 259 ESACGEVTRLRLLGD-QLHSTRIAFVEFALADSALSAL-NCSGMVVGSQPIRVS 310
>AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 69/158 (43%), Gaps = 10/158 (6%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNF 168
IFV L +L D F +G I CK D SGQSKGYGF+ F++ A+NA+
Sbjct: 130 IFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQP 189
Query: 169 NGKLIGDKEVYVSHFQRKQDRENAALGGGKFNN-------VYVKNLSEAMTDDDLKKIFS 221
K IG + + N + + N +YV N+S + L + FS
Sbjct: 190 Q-KKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFFS 248
Query: 222 EYGTITSAVVMRD-VDGKSKCFGFVNFENADEAAKAVD 258
+G I + D G+ K F + + + A KA++
Sbjct: 249 RFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALE 286
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 20/161 (12%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDA------- 74
++V L + L D F Q G++ + D + QS GYG++ F + A
Sbjct: 130 IFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQP 189
Query: 75 -------ATALDVLNFTPLNGKPIRIMYSHRDP-SVRKSGAANIFVKNLDKSIDHKALYD 126
TA + + P+ G P+ H +P +V++ I+V N+ ID + L +
Sbjct: 190 QKKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENVQRK----IYVSNVSADIDPQKLLE 245
Query: 127 TFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAID 166
F FG I + D +G+ KG+ + + ESA+ A++
Sbjct: 246 FFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALE 286
>AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 69/158 (43%), Gaps = 10/158 (6%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNF 168
IFV L +L D F +G I CK D SGQSKGYGF+ F++ A+NA+
Sbjct: 130 IFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQP 189
Query: 169 NGKLIGDKEVYVSHFQRKQDRENAALGGGKFNN-------VYVKNLSEAMTDDDLKKIFS 221
K IG + + N + + N +YV N+S + L + FS
Sbjct: 190 Q-KKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFFS 248
Query: 222 EYGTITSAVVMRD-VDGKSKCFGFVNFENADEAAKAVD 258
+G I + D G+ K F + + + A KA++
Sbjct: 249 RFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALE 286
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 20/161 (12%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDA------- 74
++V L + L D F Q G++ + D + QS GYG++ F + A
Sbjct: 130 IFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQP 189
Query: 75 -------ATALDVLNFTPLNGKPIRIMYSHRDP-SVRKSGAANIFVKNLDKSIDHKALYD 126
TA + + P+ G P+ H +P +V++ I+V N+ ID + L +
Sbjct: 190 QKKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENVQRK----IYVSNVSADIDPQKLLE 245
Query: 127 TFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAID 166
F FG I + D +G+ KG+ + + ESA+ A++
Sbjct: 246 FFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALE 286
>AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256014 FORWARD LENGTH=231
Length = 231
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 79/177 (44%), Gaps = 17/177 (9%)
Query: 12 QEANQPMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNP 71
Q + P +++G L + ++ F + G++ + RD T Q G+G++ F +P
Sbjct: 11 QSGDGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADP 70
Query: 72 KDAATALDVLNFTPLNGKPIRIMYSHRDPSVRKSGAAN---------IFVKNLDKSIDHK 122
++ + +NGK + I ++ K N IFV + ++
Sbjct: 71 SVVDKVIEDTHV--INGKQVEI-----KRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTED 123
Query: 123 ALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEV 178
L D F +GN++ ++ D + +S+G+GFV F++EE + N + D +V
Sbjct: 124 ELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQV 180
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 76/167 (45%), Gaps = 40/167 (23%)
Query: 202 VYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVD-- 258
+++ L + T+ K F +YG IT +V+MRD G+ + FGF+ F + K ++
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDT 80
Query: 259 -ALNGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGAN---------LYLK 308
+NGK+ + ++ T+ K G N +++
Sbjct: 81 HVINGKQVE--------------------------IKRTIPKGAGGNQSKDIKTKKIFVG 114
Query: 309 NLDDNVDDEKLRELFSEFGTITSCKIMRDPH-GVSRGSGFVAFSTPE 354
+ V +++L++ F+++G + +++RD SRG GFV F + E
Sbjct: 115 GIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEE 161
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 73/164 (44%), Gaps = 15/164 (9%)
Query: 105 SGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQN 163
+ IF+ L K + F +G I I D +GQ +G+GF+ F +
Sbjct: 16 ASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDK 75
Query: 164 AIDN---FNGKLIGDKEVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIF 220
I++ NGK + K Q ++ K ++V + +T+D+LK F
Sbjct: 76 VIEDTHVINGKQVEIKRTIPKGAGGNQSKDI------KTKKIFVGGIPSTVTEDELKDFF 129
Query: 221 SEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVDALNGK 263
++YG + V+RD + +S+ FGFV F ++ + VD L K
Sbjct: 130 AKYGNVVEHQVIRDHETNRSRGFGFVIF----DSEEVVDELLSK 169
>AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=363
Length = 363
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 200 NNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVD 258
N +YV NLS + D L+ +F+E G + A V+ D D G+SK FGFV ++ E KA++
Sbjct: 278 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 337
Query: 259 ALNGKKFDDKEWYV 272
+LNG D ++ V
Sbjct: 338 SLNGADLDGRQIRV 351
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 48/79 (60%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
LYVG+L ++D L +LFN+ G+VV RV D + +S G+G+V ++ ++ A++ L
Sbjct: 280 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 339
Query: 82 NFTPLNGKPIRIMYSHRDP 100
N L+G+ IR+ + P
Sbjct: 340 NGADLDGRQIRVSEAEARP 358
>AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 |
chr1:21727374-21728539 FORWARD LENGTH=360
Length = 360
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 82/183 (44%), Gaps = 24/183 (13%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNF 168
+FV + K +AL F +G +L +A + +G+ +G+GFV+F N+ A+ +
Sbjct: 8 LFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRDT 67
Query: 169 N---------GKLIGDKEVYVSHF-----QRKQDRENAALGGGKFNNV-------YVKNL 207
+ K I E+Y F +RK + N L N V +V L
Sbjct: 68 HFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKKIFVGGL 127
Query: 208 SEAMTDDDLKKIFSEYGTITSAVVMRD-VDGKSKCFGFVNFENADEAAKAVDALNGKKFD 266
S T+++ K F +G T VVM D V + + FGFV +++ D + + V N +
Sbjct: 128 SSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSED-SVEVVMQSNFHELS 186
Query: 267 DKE 269
DK
Sbjct: 187 DKR 189
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 75/175 (42%), Gaps = 36/175 (20%)
Query: 202 VYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRD-VDGKSKCFGFVNFENADEAAKAV--- 257
++V +++ +++ LK+ FS YG + AVV ++ V GK + FGFV F N + KA+
Sbjct: 8 LFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRDT 67
Query: 258 DALNGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGAN------------- 304
+ GK D ++ Q SMQ K Q N
Sbjct: 68 HFILGKPVDVRK----------AIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTS 117
Query: 305 ----LYLKNLDDNVDDEKLRELFSEFGTITSCKIMRDPHGVS---RGSGFVAFST 352
+++ L N +E+ + F FG T +M D GV+ RG GFV + +
Sbjct: 118 RTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHD--GVTNRPRGFGFVTYDS 170
>AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 200 NNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVD 258
N +YV NLS + D L+ +F+E G + A V+ D D G+SK FGFV ++ E KA++
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316
Query: 259 ALNGKKFDDKEWYV 272
+LNG D ++ V
Sbjct: 317 SLNGADLDGRQIRV 330
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 48/79 (60%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
LYVG+L ++D L +LFN+ G+VV RV D + +S G+G+V ++ ++ A++ L
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 82 NFTPLNGKPIRIMYSHRDP 100
N L+G+ IR+ + P
Sbjct: 319 NGADLDGRQIRVSEAEARP 337
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAIDNF 168
++V NL +D AL + F G ++ ++ D SG+SKG+GFV + + Q AI++
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 169 NGKLIGDKEVYVSHFQRKQDR 189
NG + +++ VS + + R
Sbjct: 319 NGADLDGRQIRVSEAEARPPR 339
>AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 200 NNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVD 258
N +YV NLS + D L+ +F+E G + A V+ D D G+SK FGFV ++ E KA++
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316
Query: 259 ALNGKKFDDKEWYV 272
+LNG D ++ V
Sbjct: 317 SLNGADLDGRQIRV 330
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 48/79 (60%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
LYVG+L ++D L +LFN+ G+VV RV D + +S G+G+V ++ ++ A++ L
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 82 NFTPLNGKPIRIMYSHRDP 100
N L+G+ IR+ + P
Sbjct: 319 NGADLDGRQIRVSEAEARP 337
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAIDNF 168
++V NL +D AL + F G ++ ++ D SG+SKG+GFV + + Q AI++
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 169 NGKLIGDKEVYVSHFQRKQDR 189
NG + +++ VS + + R
Sbjct: 319 NGADLDGRQIRVSEAEARPPR 339
>AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 200 NNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVD 258
N +YV NLS + D L+ +F+E G + A V+ D D G+SK FGFV ++ E KA++
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316
Query: 259 ALNGKKFDDKEWYV 272
+LNG D ++ V
Sbjct: 317 SLNGADLDGRQIRV 330
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 48/79 (60%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
LYVG+L ++D L +LFN+ G+VV RV D + +S G+G+V ++ ++ A++ L
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 82 NFTPLNGKPIRIMYSHRDP 100
N L+G+ IR+ + P
Sbjct: 319 NGADLDGRQIRVSEAEARP 337
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAIDNF 168
++V NL +D AL + F G ++ ++ D SG+SKG+GFV + + Q AI++
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 169 NGKLIGDKEVYVSHFQRKQDR 189
NG + +++ VS + + R
Sbjct: 319 NGADLDGRQIRVSEAEARPPR 339
>AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=438
Length = 438
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Query: 105 SGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQN 163
AN+F+ N+ + + + L TF FG +L+ K+ D +G SK +GF+ ++++ +AQN
Sbjct: 336 PAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQN 395
Query: 164 AIDNFNGKLIGDKEVYVSHFQRKQD 188
AI+ NG + K++ V Q K+D
Sbjct: 396 AINTMNGCQLSGKKLKV---QLKRD 417
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 201 NVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRD-VDGKSKCFGFVNFENADEAAKAVDA 259
N+++ N+ D +L F +G + SA V D G SKCFGF+++++ A A++
Sbjct: 340 NLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINT 399
Query: 260 LNGKKFDDKEWYV 272
+NG + K+ V
Sbjct: 400 MNGCQLSGKKLKV 412
>AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=429
Length = 429
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Query: 105 SGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQN 163
AN+F+ N+ + + + L TF FG +L+ K+ D +G SK +GF+ ++++ +AQN
Sbjct: 327 PAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQN 386
Query: 164 AIDNFNGKLIGDKEVYVSHFQRKQD 188
AI+ NG + K++ V Q K+D
Sbjct: 387 AINTMNGCQLSGKKLKV---QLKRD 408
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 201 NVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRD-VDGKSKCFGFVNFENADEAAKAVDA 259
N+++ N+ D +L F +G + SA V D G SKCFGF+++++ A A++
Sbjct: 331 NLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINT 390
Query: 260 LNGKKFDDKEWYV 272
+NG + K+ V
Sbjct: 391 MNGCQLSGKKLKV 403
>AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid
binding;RNA binding | chr4:10677482-10681623 FORWARD
LENGTH=816
Length = 816
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 199 FNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFVNFENADEAAKAVD 258
+ + VKNL + + +D L+ FS+ G IT A +MR DGKS+ FGF+ F +A EA +A+
Sbjct: 1 MSRICVKNLPKHVKEDQLRDHFSQKGEITDAKLMRSNDGKSRQFGFIGFRSAQEAQQAIK 60
Query: 259 ALN 261
N
Sbjct: 61 YFN 63
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 79/176 (44%), Gaps = 12/176 (6%)
Query: 99 DPSVRKSGAANIFVKNLD-KSIDH--KALYDTFLVFGNILTCKIATDGSGQ---SKGYGF 152
DP V +S N VKNL K+ D K + + G IL+ I + S GYGF
Sbjct: 595 DPDVTESNVLN--VKNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGF 652
Query: 153 VQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALGGGK---FNNVYVKNLSE 209
V+F++ E+A + + G ++ D + F + + K ++VKN++
Sbjct: 653 VEFDSVETATSVYRDLQGTVL-DGHALILRFCENKRSDKVGKDSNKDKPCTKLHVKNIAF 711
Query: 210 AMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFVNFENADEAAKAVDALNGKKF 265
T +L+++FS +G I S + + G+ + FV F EA A AL F
Sbjct: 712 EATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNAKKALASTHF 767
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 12/155 (7%)
Query: 22 LYVGDLDTEINDSQLYDLFNQI---GQVVSVRVCRDLATQQSL--GYGYVNFTNPKDAAT 76
L V +L + D L F ++ G+++SV + + ++ L GYG+V F + + A +
Sbjct: 604 LNVKNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGFVEFDSVETATS 663
Query: 77 ALDVLNFTPLNGKP--IRIMYSHRDPSVRKSG-----AANIFVKNLDKSIDHKALYDTFL 129
L T L+G +R + R V K + VKN+ + L F
Sbjct: 664 VYRDLQGTVLDGHALILRFCENKRSDKVGKDSNKDKPCTKLHVKNIAFEATKRELRQLFS 723
Query: 130 VFGNILTCKIATDGSGQSKGYGFVQFENEESAQNA 164
FG I + ++ GQ GY FV+F ++ A NA
Sbjct: 724 PFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNA 758
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%)
Query: 303 ANLYLKNLDDNVDDEKLRELFSEFGTITSCKIMRDPHGVSRGSGFVAFSTPEEATRA 359
+ + +KNL +V +++LR+ FS+ G IT K+MR G SR GF+ F + +EA +A
Sbjct: 2 SRICVKNLPKHVKEDQLRDHFSQKGEITDAKLMRSNDGKSRQFGFIGFRSAQEAQQA 58
>AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=453
Length = 453
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 92/197 (46%), Gaps = 35/197 (17%)
Query: 107 AANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAI 165
+ +F+ + L D F FG +L I D +G+++G+GFV F + A+ +
Sbjct: 5 SCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVV 64
Query: 166 ---DNFNGKLIGDKEVY--------------VSHFQRKQDRE--------NAALGG--GK 198
+GK++ D VY V ++ R+ N++L G G
Sbjct: 65 LLKHIIDGKILVDSIVYNQLCRSDKCISLSEVVEAKKAVPRDDHVVFNKSNSSLQGSPGP 124
Query: 199 FNN--VYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRD-VDGKSKCFGFVNFENADEAAK 255
N+ ++V L+ ++T+ + KK F+++G IT VVM D + + FGF+++++ + K
Sbjct: 125 SNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDK 184
Query: 256 AVDA----LNGKKFDDK 268
+ LNGK + K
Sbjct: 185 VLQKTFHELNGKMVEVK 201
>AT2G47310.1 | Symbols: | flowering time control protein-related /
FCA gamma-related | chr2:19423791-19426846 FORWARD
LENGTH=512
Length = 512
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 71/164 (43%), Gaps = 8/164 (4%)
Query: 197 GKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRD-VDGKSKCFGFVNFENADEAAK 255
G +YV +S+ T+ D++++F +YG +T ++ +D + G+ + F+ ++ +E
Sbjct: 107 GSIAKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKYKKVEEGNA 166
Query: 256 AVDALNGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVD 315
A+ AL E + + E+ V LY++ L+
Sbjct: 167 AIAALT-------EQFTFPGEMLPVKVRFAEAERERIGFAPVQLPDNPKLYVRCLNKQTT 219
Query: 316 DEKLRELFSEFGTITSCKIMRDPHGVSRGSGFVAFSTPEEATRA 359
++ E+FS +G I + D + RG FV FS E A A
Sbjct: 220 KMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAA 263
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 58/97 (59%), Gaps = 1/97 (1%)
Query: 2 AQIHETDAVAQEANQPMPTS-LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQS 60
AQ+ + +A + M +S L++G + +++ L + F + G+VV RV D T +S
Sbjct: 21 AQVSLSSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRS 80
Query: 61 LGYGYVNFTNPKDAATALDVLNFTPLNGKPIRIMYSH 97
G+G+V FT+ + A++A+ L+ L+G+ +++ Y++
Sbjct: 81 RGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYAN 117
>AT1G53650.1 | Symbols: CID8 | CTC-interacting domain 8 |
chr1:20029262-20031243 REVERSE LENGTH=314
Length = 314
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 20/175 (11%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDV 80
++YV D+D + + L LF+ GQVV R+C D L + +V F++ + A +AL
Sbjct: 129 TVYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGD--PNSVLRFAFVEFSDDQGARSALS- 185
Query: 81 LNFTPLNGKPIRIMYSH------------RDPSVRKSGAANIFVKNLDKSIDHKALYDTF 128
L T + P+R++ S R R+ + I+ N+DK+ + +TF
Sbjct: 186 LGGTMIGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTIYCTNVDKNATEDDV-NTF 244
Query: 129 L--VFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVS 181
G + ++ D S FV+F ESA A+ N +G ++G + + VS
Sbjct: 245 FQSACGEVTRLRLLGD-QVHSTRIAFVEFAMAESAVAAL-NCSGIVLGSQPIRVS 297
>AT1G53650.2 | Symbols: CID8 | CTC-interacting domain 8 |
chr1:20029262-20031243 REVERSE LENGTH=308
Length = 308
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 20/175 (11%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDV 80
++YV D+D + + L LF+ GQVV R+C D L + +V F++ + A +AL
Sbjct: 123 TVYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGD--PNSVLRFAFVEFSDDQGARSALS- 179
Query: 81 LNFTPLNGKPIRIMYSH------------RDPSVRKSGAANIFVKNLDKSIDHKALYDTF 128
L T + P+R++ S R R+ + I+ N+DK+ + +TF
Sbjct: 180 LGGTMIGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTIYCTNVDKNATEDDV-NTF 238
Query: 129 L--VFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVS 181
G + ++ D S FV+F ESA A+ N +G ++G + + VS
Sbjct: 239 FQSACGEVTRLRLLGD-QVHSTRIAFVEFAMAESAVAAL-NCSGIVLGSQPIRVS 291
>AT5G03580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:906956-907422 REVERSE LENGTH=101
Length = 101
Score = 55.1 bits (131), Expect = 8e-08, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 49/80 (61%)
Query: 109 NIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNF 168
++++ NLD + + L+ F FG ++ +A D G+S+G+ F++FE+ +SA A+ +
Sbjct: 18 SLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSAGRAMLHM 77
Query: 169 NGKLIGDKEVYVSHFQRKQD 188
+G+LIG K + V + +D
Sbjct: 78 DGRLIGQKILCVQRTPKVED 97
Score = 53.5 bits (127), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 46/71 (64%)
Query: 198 KFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFVNFENADEAAKAV 257
KF ++Y+ NL ++++ L +FS++G + +V+ +D G+S+ F F+ FE+AD A +A+
Sbjct: 15 KFTSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSAGRAM 74
Query: 258 DALNGKKFDDK 268
++G+ K
Sbjct: 75 LHMDGRLIGQK 85
>AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445552-13447592 FORWARD LENGTH=455
Length = 455
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 84/180 (46%), Gaps = 20/180 (11%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAIDN- 167
+F+ + D + L + F +G+++ I D +G+++G+GF+ F + A+ I +
Sbjct: 17 LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDK 76
Query: 168 --FNGKLIGDKEVYVSHFQRKQDRENAAL-----------GGGKFNNVYVKNLSEAMTDD 214
+G+ + K+ Q+ R + + GG + ++V L ++T+
Sbjct: 77 HIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSITEA 136
Query: 215 DLKKIFSEYGTITSAVVMRDVDG-KSKCFGFVNFENADEA----AKAVDALNGKKFDDKE 269
+ K F ++GTI VVM D + + + FGF+ F++ + K LNGK + K
Sbjct: 137 EFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVKR 196
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 79/178 (44%), Gaps = 28/178 (15%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
L++G + + ++ +L + F + G +V + RD T ++ G+G++ F +P A ++
Sbjct: 17 LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERV--IM 74
Query: 82 NFTPLNGKPI-----------RIMYSHRDPS--VRKSGAAN--------IFVKNLDKSID 120
+ ++G+ + +++ H P + S N IFV L SI
Sbjct: 75 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSIT 134
Query: 121 HKALYDTFLVFGNILTCKIATDGSGQ-SKGYGFVQFENEESA----QNAIDNFNGKLI 173
+ F FG I + D + Q +G+GF+ F++EES NGK++
Sbjct: 135 EAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMV 192
>AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:16912511-16913250 REVERSE LENGTH=102
Length = 102
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 201 NVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDG-KSKCFGFVNFENADEAAKAVDA 259
++V LS TD L+++FS +G I A ++RD + + K FGF+ F++ D+A KA+ +
Sbjct: 8 QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKS 67
Query: 260 LNGKKFDDKEWYV 272
L+GK D + +V
Sbjct: 68 LDGKIVDGRLIFV 80
>AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445265-13447592 FORWARD LENGTH=452
Length = 452
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 84/180 (46%), Gaps = 20/180 (11%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAIDN- 167
+F+ + D + L + F +G+++ I D +G+++G+GF+ F + A+ I +
Sbjct: 14 LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDK 73
Query: 168 --FNGKLIGDKEVYVSHFQRKQDRENAAL-----------GGGKFNNVYVKNLSEAMTDD 214
+G+ + K+ Q+ R + + GG + ++V L ++T+
Sbjct: 74 HIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSITEA 133
Query: 215 DLKKIFSEYGTITSAVVMRDVDG-KSKCFGFVNFENADEA----AKAVDALNGKKFDDKE 269
+ K F ++GTI VVM D + + + FGF+ F++ + K LNGK + K
Sbjct: 134 EFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVKR 193
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 79/178 (44%), Gaps = 28/178 (15%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
L++G + + ++ +L + F + G +V + RD T ++ G+G++ F +P A ++
Sbjct: 14 LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERV--IM 71
Query: 82 NFTPLNGKPI-----------RIMYSHRDPS--VRKSGAAN--------IFVKNLDKSID 120
+ ++G+ + +++ H P + S N IFV L SI
Sbjct: 72 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSIT 131
Query: 121 HKALYDTFLVFGNILTCKIATDGSGQ-SKGYGFVQFENEESA----QNAIDNFNGKLI 173
+ F FG I + D + Q +G+GF+ F++EES NGK++
Sbjct: 132 EAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMV 189
>AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8231179-8232785 FORWARD LENGTH=411
Length = 411
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 80/173 (46%), Gaps = 21/173 (12%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNF 168
+FV + D L + F +G + + D +G+ +G+GFV F + +
Sbjct: 8 LFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEK 67
Query: 169 NGKLIGDKEVYVSHFQRKQDRE----------NAALGGGKFNN---VYVKNLSEAMTDDD 215
+ I +EV V +++++ + + GG +N ++V L +TD++
Sbjct: 68 H--SIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEE 125
Query: 216 LKKIFSEYGTITSAVVMRD-VDGKSKCFGFVNFENADEAAKAVDALNGKKFDD 267
++ F YG +T +M D + + FGFV+F++ D AVD++ K F D
Sbjct: 126 FRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSED----AVDSVLHKTFHD 174
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 9 AVAQEANQP----------MPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQ 58
V+Q +N P M + L+VG L +DS L F G+V V D T
Sbjct: 14 GVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETG 73
Query: 59 QSLGYGYVNFTNPKDAATALDVLNFTPLNGKPIRI-MYSHRDPSVRKS 105
+S G+G+V+F+ A A+ ++ LNG+ IR+ + + R + R S
Sbjct: 74 RSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERSSAPRSS 121
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 200 NNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVD 258
+ ++V LS D LK+ F+ +G +T A V+ D + G+S+ FGFV+F D A A+
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 259 ALNGKKFDDKEWYV 272
++GK+ + ++ V
Sbjct: 95 EMDGKELNGRQIRV 108
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 107 AANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAI 165
++ +FV L D +L F FG + + D +G+S+G+GFV F E+SA NAI
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 166 DNFNGKLIGDKEVYV 180
+GK + +++ V
Sbjct: 94 KEMDGKELNGRQIRV 108
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 9 AVAQEANQP----------MPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQ 58
V+Q +N P M + L+VG L +DS L F G+V V D T
Sbjct: 14 GVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETG 73
Query: 59 QSLGYGYVNFTNPKDAATALDVLNFTPLNGKPIRI-MYSHRDPSVRKS 105
+S G+G+V+F+ A A+ ++ LNG+ IR+ + + R + R S
Sbjct: 74 RSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERSSAPRSS 121
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 200 NNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVD 258
+ ++V LS D LK+ F+ +G +T A V+ D + G+S+ FGFV+F D A A+
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 259 ALNGKKFDDKEWYV 272
++GK+ + ++ V
Sbjct: 95 EMDGKELNGRQIRV 108
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 107 AANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAI 165
++ +FV L D +L F FG + + D +G+S+G+GFV F E+SA NAI
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 166 DNFNGKLIGDKEVYV 180
+GK + +++ V
Sbjct: 94 KEMDGKELNGRQIRV 108
>AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 |
chr5:19203801-19204951 FORWARD LENGTH=212
Length = 212
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 18 MPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATA 77
M T LY+G L ++ L D F+ V RV + T +S GYG+VNF + A +A
Sbjct: 29 MSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSA 88
Query: 78 LDVLNFTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSID 120
+ +N LNG I + + PS+ S LD+SI+
Sbjct: 89 ISAMNGQELNGFNISVNVAKDWPSLPLS---------LDESIE 122
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 202 VYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRD-VDGKSKCFGFVNFENADEAAKAVDAL 260
+Y+ LS + LK FS + +T A VM + V G+S+ +GFVNF + D A A+ A+
Sbjct: 33 LYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAM 92
Query: 261 NGKKFD 266
NG++ +
Sbjct: 93 NGQELN 98
>AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:1878497-1879515 FORWARD LENGTH=146
Length = 146
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 197 GKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSA-VVMRDVDGKSKCFGFVNFENADEAAK 255
G + +++ LS T+ L + FS+ G + A +VM V +SK FGFV F +ADEA K
Sbjct: 31 GVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQK 90
Query: 256 AVDALNGKKFDDKEWYV 272
A+ NG++ + + +V
Sbjct: 91 ALMEFNGQQLNGRTIFV 107
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 103 RKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESA 161
R+ A+ +F+ L + L + F G ++ +I D S +SKG+GFV F + + A
Sbjct: 29 RRGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEA 88
Query: 162 QNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALGGG 197
Q A+ FNG+ + + ++V + + KQ +LGGG
Sbjct: 89 QKALMEFNGQQLNGRTIFVDYAKAKQ-----SLGGG 119
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%)
Query: 18 MPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATA 77
+ + L++G L + L + F++ GQVV ++ D + +S G+G+V F + +A A
Sbjct: 32 VASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKA 91
Query: 78 LDVLNFTPLNGKPIRIMYSHRDPSVRKSGAANI 110
L N LNG+ I + Y+ S+ G I
Sbjct: 92 LMEFNGQQLNGRTIFVDYAKAKQSLGGGGGYPI 124
>AT5G51300.3 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 201 NVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRD-VDGKSKCFGFVNFENADEAAKAVDA 259
N+Y+ L + DD L +FS +G I A V++D V G SK +GFV + + A AV A
Sbjct: 481 NLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQA 540
Query: 260 LNGKKFDDK 268
+NG +F+ +
Sbjct: 541 MNGYRFEGR 549
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%)
Query: 20 TSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD 79
T+LY+G L + D L +LF+ G++V +V +D T S GYG+V + + + A TA+
Sbjct: 480 TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQ 539
Query: 80 VLN 82
+N
Sbjct: 540 AMN 542
>AT5G51300.2 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 201 NVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRD-VDGKSKCFGFVNFENADEAAKAVDA 259
N+Y+ L + DD L +FS +G I A V++D V G SK +GFV + + A AV A
Sbjct: 481 NLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQA 540
Query: 260 LNGKKFDDK 268
+NG +F+ +
Sbjct: 541 MNGYRFEGR 549
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%)
Query: 20 TSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD 79
T+LY+G L + D L +LF+ G++V +V +D T S GYG+V + + + A TA+
Sbjct: 480 TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQ 539
Query: 80 VLN 82
+N
Sbjct: 540 AMN 542
>AT5G51300.1 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 201 NVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRD-VDGKSKCFGFVNFENADEAAKAVDA 259
N+Y+ L + DD L +FS +G I A V++D V G SK +GFV + + A AV A
Sbjct: 481 NLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQA 540
Query: 260 LNGKKFDDK 268
+NG +F+ +
Sbjct: 541 MNGYRFEGR 549
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%)
Query: 20 TSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD 79
T+LY+G L + D L +LF+ G++V +V +D T S GYG+V + + + A TA+
Sbjct: 480 TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQ 539
Query: 80 VLN 82
+N
Sbjct: 540 AMN 542
>AT1G53720.1 | Symbols: ATCYP59, CYP59 | cyclophilin 59 |
chr1:20057012-20059508 FORWARD LENGTH=506
Length = 506
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 200 NNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVD 258
N ++V L+ D+DL IFS +GT+ SA V+RD G S C+ F+ FEN + +A
Sbjct: 243 NVLFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYF 302
Query: 259 ALNGKKFDDKEWYV 272
++ DD+ +V
Sbjct: 303 KMDNALIDDRRIHV 316
>AT3G10400.1 | Symbols: | RNA recognition motif and CCHC-type zinc
finger domains containing protein | chr3:3232636-3233421
FORWARD LENGTH=261
Length = 261
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 45/74 (60%)
Query: 20 TSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD 79
++LYV +LD + +S ++ LF+ G+V V V +D T+QS G +V + + +DAA A
Sbjct: 57 STLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAAR 116
Query: 80 VLNFTPLNGKPIRI 93
++ LNG+ + +
Sbjct: 117 SMDAKILNGRKLTV 130
>AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation
initiation factor 3G1 | chr3:3578536-3580366 FORWARD
LENGTH=321
Length = 321
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 200 NNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVD 258
N+V V NLSE + DL ++F +G +T V D G S+ FGFVNF + ++A +A++
Sbjct: 240 NSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAIN 299
Query: 259 ALNGKKFDD 267
LNG +D+
Sbjct: 300 KLNGYGYDN 308
>AT3G11400.1 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation
initiation factor 3G1 | chr3:3578536-3580366 FORWARD
LENGTH=294
Length = 294
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 200 NNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVD 258
N+V V NLSE + DL ++F +G +T V D G S+ FGFVNF + ++A +A++
Sbjct: 213 NSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAIN 272
Query: 259 ALNGKKFDD 267
LNG +D+
Sbjct: 273 KLNGYGYDN 281
>AT5G19030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6357503-6359081 REVERSE LENGTH=172
Length = 172
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 52/92 (56%)
Query: 23 YVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVLN 82
+V +++ +L +F++ GQV +V++ + T+QSLGYGYV F + +DA +A++ +N
Sbjct: 80 FVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMN 139
Query: 83 FTPLNGKPIRIMYSHRDPSVRKSGAANIFVKN 114
+G+ I + + S R+ ++ N
Sbjct: 140 GKFFDGRFILVKFGQPGLSRRRRPHSDFLFVN 171
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 203 YVKNLSEAMTDDDLKKIFSEYGTITSA-VVMRDVDGKSKCFGFVNFENADEAAKAVDALN 261
+VK S+++++ LKK+FSE+G +T+ ++ + +S +G+V F + ++A AV+A+N
Sbjct: 80 FVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMN 139
Query: 262 GKKFDDK 268
GK FD +
Sbjct: 140 GKFFDGR 146
>AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like 1 |
chr1:18098186-18101422 FORWARD LENGTH=557
Length = 557
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 85/175 (48%), Gaps = 22/175 (12%)
Query: 106 GAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNA 164
G+ +F NL +I+ + + F G ++ + +T+ G +G+G V+F + E AQ A
Sbjct: 295 GSKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKA 354
Query: 165 IDNFNGKLIGDKEVYVSHFQRKQDR-ENAALG-----------GGKFNNVYVKNLSEAMT 212
++ F+G+ + +E+ + Q + +R E A GG ++VK +++
Sbjct: 355 LE-FHGRPLLGREIRLDIAQERGERGERPAFTPQSGNFRSGGDGGDEKKIFVKGFDASLS 413
Query: 213 DDDLKKI----FSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVDALNG 262
+DD+K FS G I + V D D G SK ++ F E KA++ LNG
Sbjct: 414 EDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSEGKE--KALE-LNG 465
>AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 78/174 (44%), Gaps = 7/174 (4%)
Query: 18 MPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATA 77
M L V + +I+ L D ++ G + V +D +T +S G+GYV F + +DA A
Sbjct: 1 MERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNA 60
Query: 78 LDVLNFTPLNGKPIRIMYSHRDPSVRKSG--AANIFVKNLDKSIDHKALYDTFLVFGNIL 135
L +F L + + + + +R+ IFV + S+ F +G I
Sbjct: 61 LKGEHF--LGNRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEIT 118
Query: 136 TCKIATD-GSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQD 188
+ D S Q +G GF+ F + +S ++ +++ + +G V V K+D
Sbjct: 119 DLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDTHD--LGGTTVAVDRATPKED 170
>AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 78/174 (44%), Gaps = 7/174 (4%)
Query: 18 MPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATA 77
M L V + +I+ L D ++ G + V +D +T +S G+GYV F + +DA A
Sbjct: 1 MERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNA 60
Query: 78 LDVLNFTPLNGKPIRIMYSHRDPSVRKSG--AANIFVKNLDKSIDHKALYDTFLVFGNIL 135
L +F L + + + + +R+ IFV + S+ F +G I
Sbjct: 61 LKGEHF--LGNRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEIT 118
Query: 136 TCKIATD-GSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQD 188
+ D S Q +G GF+ F + +S ++ +++ + +G V V K+D
Sbjct: 119 DLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDTHD--LGGTTVAVDRATPKED 170
>AT1G13690.1 | Symbols: ATE1 | ATPase E1 | chr1:4693380-4694179
FORWARD LENGTH=177
Length = 177
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDV 80
+LYVG L E+N+S L+ F G + V+ D A Q+ +G+V F +DA+ A+D
Sbjct: 14 TLYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDN 73
Query: 81 LNFTPLNGKPIRIMYS 96
++ L G+ + + Y+
Sbjct: 74 MDGAELYGRVLTVNYA 89
>AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22171332-22172656 FORWARD LENGTH=156
Length = 156
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 200 NNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRD-VDGKSKCFGFVNFENADEAAKAVD 258
N++V LS+ T + L+ F+++G + A V+ D V G SK FGFV + +++AK +
Sbjct: 56 TNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIA 115
Query: 259 ALNGKKFDDKEWYV 272
++GK D W +
Sbjct: 116 GMDGKFLDG--WVI 127
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 109 NIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDN 167
N+FV L K + L F FG + K+ TD SG SKG+GFV++ E + I
Sbjct: 57 NLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAG 116
Query: 168 FNGKLIGDKEVYVSHFQRKQDRENA 192
+GK + D V + + R +++ +
Sbjct: 117 MDGKFL-DGWVIFAEYARPREQSQS 140
>AT4G03110.2 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376710-1379275 REVERSE
LENGTH=439
Length = 439
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 72/151 (47%), Gaps = 2/151 (1%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
L+VG + +++SQL LF + V V + +D T+ S G ++ + ++A ++
Sbjct: 20 LFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNAC 79
Query: 82 -NFTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIA 140
N L G + + D + + +FV L K++ + F +G I +I
Sbjct: 80 HNKKTLPGANSLLQVKYADGELERL-EHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQIL 138
Query: 141 TDGSGQSKGYGFVQFENEESAQNAIDNFNGK 171
SKG F+++E +E A +A+++ NGK
Sbjct: 139 RGAQQTSKGCAFLKYETKEQAVSAMESINGK 169
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 10/160 (6%)
Query: 107 AANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAI 165
+ +FV + K + L F F + I D + S+G F+ + E A +
Sbjct: 17 SVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLV 76
Query: 166 DNFNGK--LIGDKEVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEY 223
+ + K L G + + D E L F + KN+SEA +++ +FS+Y
Sbjct: 77 NACHNKKTLPGANSLLQVKYA---DGELERLEHKLFVGMLPKNVSEA----EVQSLFSKY 129
Query: 224 GTITSAVVMRDVDGKSKCFGFVNFENADEAAKAVDALNGK 263
GTI ++R SK F+ +E ++A A++++NGK
Sbjct: 130 GTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESINGK 169
>AT2G46610.1 | Symbols: RS31a, At-RS31a | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr2:19136769-19138492 REVERSE
LENGTH=250
Length = 250
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 23/169 (13%)
Query: 109 NIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNF 168
+++V N D H L F FG + + + GY FV FE+E A++AI
Sbjct: 3 HVYVGNFDYDTRHSDLERLFSKFGRVKRVDMKS-------GYAFVYFEDERDAEDAIRRT 55
Query: 169 NGKLIGDKEVYVS-----HFQ--RKQDRENAALGGGK-FNNVYVKNLSEAMTDD-DLKKI 219
+ G +S FQ R + R+ A+ + ++V N T + D+++
Sbjct: 56 DNTTFGYGRRKLSVEWAKDFQGERGKPRDGKAVSNQRPTKTLFVINFDPIRTRERDMERH 115
Query: 220 FSEYGTITSAVVMRDVDGKSKCFGFVNFENADEAAKAVDALNGKKFDDK 268
F YG + + + R+ F FV F ++A KA+D+ + K DK
Sbjct: 116 FEPYGKVLNVRMRRN-------FAFVQFATQEDATKALDSTHNSKLLDK 157
>AT5G64200.2 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human
splicing factor SC35 | chr5:25681849-25683553 REVERSE
LENGTH=303
Length = 303
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 12/97 (12%)
Query: 180 VSHFQRKQDRENAALGGGKFNNVY---VKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVD 236
+SHF R G ++ Y V N++ T DDL +F++YG + + RD
Sbjct: 1 MSHFGRS--------GPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRR 52
Query: 237 -GKSKCFGFVNFENADEAAKAVDALNGKKFDDKEWYV 272
G S+ F FV ++ DEA KAV+ L+G+ D +E V
Sbjct: 53 TGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITV 89
>AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human
splicing factor SC35 | chr5:25681849-25683553 REVERSE
LENGTH=303
Length = 303
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 12/97 (12%)
Query: 180 VSHFQRKQDRENAALGGGKFNNVY---VKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVD 236
+SHF R G ++ Y V N++ T DDL +F++YG + + RD
Sbjct: 1 MSHFGRS--------GPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRR 52
Query: 237 -GKSKCFGFVNFENADEAAKAVDALNGKKFDDKEWYV 272
G S+ F FV ++ DEA KAV+ L+G+ D +E V
Sbjct: 53 TGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITV 89
>AT2G21690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9270114-9270597 REVERSE LENGTH=117
Length = 117
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 111 FVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAI 165
FV+ LD+ D K L D F FGN++ KI D +G+S+ +GFV FE E+S +AI
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAI 65
>AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr5:1192461-1195413 FORWARD LENGTH=310
Length = 310
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 107 AANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAI 165
+ IFV L + + L F FG+IL C+I + +G+S+G+GF+ F + + +I
Sbjct: 6 GSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESI 65
Query: 166 DNFNGKLIGDKEVYVSHFQRKQDRENA 192
+G+ GD+ + V+ + K R++
Sbjct: 66 REMHGRDFGDRVISVNRAEPKLGRDDG 92
>AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, and
rna binding 2 | chr2:9265477-9266316 REVERSE LENGTH=159
Length = 159
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 111 FVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNFN 169
FV L + D +AL F +G+++ KI D +G+S+G+GFV F++E++ ++AI+ N
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 170 GKLIGDKEVYVSHFQ 184
G+ + + + V+ Q
Sbjct: 71 GQDLDGRSITVNEAQ 85
>AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold,
circadian rhythm, and rna binding 2 |
chr2:9265477-9266316 REVERSE LENGTH=176
Length = 176
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 111 FVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNFN 169
FV L + D +AL F +G+++ KI D +G+S+G+GFV F++E++ ++AI+ N
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 170 GKLIGDKEVYVSHFQ 184
G+ + + + V+ Q
Sbjct: 71 GQDLDGRSITVNEAQ 85
>AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9392397-9393545 REVERSE LENGTH=382
Length = 382
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 103 RKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESA 161
R S NIFV+ L H+ L F V+G I C + D +G++KG+GFV F+ + A
Sbjct: 158 RDSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGA 217
Query: 162 QNAIDN 167
+ A+ N
Sbjct: 218 RAALKN 223
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 111 FVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNFN 169
FV L + + + L TF FG+++ KI D SG+S+G+GFV F++E++ ++AI+ N
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 170 GKLIGDKEVYVSHFQRK 186
GK + + + V+ Q +
Sbjct: 69 GKELDGRVITVNEAQSR 85
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 202 VYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVDAL 260
+V L+ A D+DL++ FS++G + + ++ D + G+S+ FGFV F++ A++ +
Sbjct: 8 CFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM 67
Query: 261 NGKKFDDK 268
NGK+ D +
Sbjct: 68 NGKELDGR 75
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=126
Length = 126
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 111 FVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNFN 169
FV L + + + L TF FG+++ KI D SG+S+G+GFV F++E++ ++AI+ N
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 170 GKLIGDKEVYVSHFQ 184
GK + + + V+ Q
Sbjct: 69 GKELDGRVITVNEAQ 83
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 203 YVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVDALN 261
+V L+ A D+DL++ FS++G + + ++ D + G+S+ FGFV F++ A++ +N
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 262 GKKFDDK 268
GK+ D +
Sbjct: 69 GKELDGR 75
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=169
Length = 169
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 111 FVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNFN 169
FV L + + + L TF FG+++ KI D SG+S+G+GFV F++E++ ++AI+ N
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 170 GKLIGDKEVYVSHFQ 184
GK + + + V+ Q
Sbjct: 69 GKELDGRVITVNEAQ 83
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 203 YVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVDALN 261
+V L+ A D+DL++ FS++G + + ++ D + G+S+ FGFV F++ A++ +N
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 262 GKKFDDK 268
GK+ D +
Sbjct: 69 GKELDGR 75
>AT5G19030.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6357570-6359024 REVERSE LENGTH=126
Length = 126
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 40/60 (66%)
Query: 23 YVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVLN 82
+V +++ +L +F++ GQV +V++ + T+QSLGYGYV F + +DA +A++ +N
Sbjct: 61 FVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMN 120
>AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 108 ANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAID 166
+ IFV L + + L TF +G I C+I +G+ +G+GF+ F + A +AI
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 167 NFNGKLIGDKEVYVSHFQRK---QDRENAALGGG 197
+ +G+ +G+K + V+ + K +D + GGG
Sbjct: 72 HMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGG 105
>AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 108 ANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAID 166
+ IFV L + + L TF +G I C+I +G+ +G+GF+ F + A +AI
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 167 NFNGKLIGDKEVYVSHFQRK---QDRENAALGGG 197
+ +G+ +G+K + V+ + K +D + GGG
Sbjct: 72 HMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGG 105