Miyakogusa Predicted Gene

Lj0g3v0238659.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0238659.1 Non Chatacterized Hit- tr|D8TAB8|D8TAB8_SELML
Putative uncharacterized protein OS=Selaginella
moelle,50,0.000000000000005,seg,NULL,CUFF.15650.1
         (166 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G55325.1 | Symbols: GCT | RNA polymerase II transcription med...   239   6e-64
AT1G55325.2 | Symbols: GCT | RNA polymerase II transcription med...   239   7e-64

>AT1G55325.1 | Symbols: GCT | RNA polymerase II transcription
           mediators | chr1:20637594-20646875 FORWARD LENGTH=1921
          Length = 1921

 Score =  239 bits (610), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 114/165 (69%), Positives = 130/165 (78%), Gaps = 1/165 (0%)

Query: 1   MWTNVFKLGGLHQISWFQFLPHEPDLNPLPDKSSKVDQKDAAMLLVLQSHLQLQKEGFLS 60
           MWTNVF++GGLH +SWFQFLP E +LNP  D+SS+ +Q + A  LVL SHL+LQKEGFL+
Sbjct: 1   MWTNVFRIGGLHNVSWFQFLPSETELNPGFDRSSRAEQNEVATYLVLSSHLRLQKEGFLT 60

Query: 61  TWTNSFVGPWDPSQGLHNPDEKIKLWLFLPGRHSSVVETAQPAVSGLRVVASGLWLAPGD 120
           TWTNSFVGPWDPSQGL+NPDEKIKLWLFLPGRHSS+ + AQ AVS LRVVASG+W+APGD
Sbjct: 61  TWTNSFVGPWDPSQGLYNPDEKIKLWLFLPGRHSSISDKAQAAVSKLRVVASGIWVAPGD 120

Query: 121 XXXXXXXXXXXXRNRIERALLGLYYMRFGDVFSKFHQFQSEELFR 165
                       RN IERAL G+ YMRFGDVFSKF   QSEE  R
Sbjct: 121 SEEISVAFSQSLRNCIERALSGISYMRFGDVFSKFSP-QSEEYLR 164


>AT1G55325.2 | Symbols: GCT | RNA polymerase II transcription
           mediators | chr1:20637594-20647714 FORWARD LENGTH=2001
          Length = 2001

 Score =  239 bits (609), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 114/165 (69%), Positives = 130/165 (78%), Gaps = 1/165 (0%)

Query: 1   MWTNVFKLGGLHQISWFQFLPHEPDLNPLPDKSSKVDQKDAAMLLVLQSHLQLQKEGFLS 60
           MWTNVF++GGLH +SWFQFLP E +LNP  D+SS+ +Q + A  LVL SHL+LQKEGFL+
Sbjct: 1   MWTNVFRIGGLHNVSWFQFLPSETELNPGFDRSSRAEQNEVATYLVLSSHLRLQKEGFLT 60

Query: 61  TWTNSFVGPWDPSQGLHNPDEKIKLWLFLPGRHSSVVETAQPAVSGLRVVASGLWLAPGD 120
           TWTNSFVGPWDPSQGL+NPDEKIKLWLFLPGRHSS+ + AQ AVS LRVVASG+W+APGD
Sbjct: 61  TWTNSFVGPWDPSQGLYNPDEKIKLWLFLPGRHSSISDKAQAAVSKLRVVASGIWVAPGD 120

Query: 121 XXXXXXXXXXXXRNRIERALLGLYYMRFGDVFSKFHQFQSEELFR 165
                       RN IERAL G+ YMRFGDVFSKF   QSEE  R
Sbjct: 121 SEEISVAFSQSLRNCIERALSGISYMRFGDVFSKFSP-QSEEYLR 164