Miyakogusa Predicted Gene

Lj0g3v0238359.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0238359.1 Non Chatacterized Hit- tr|J3LVQ7|J3LVQ7_ORYBR
Uncharacterized protein OS=Oryza brachyantha GN=OB04G1,41.51,1e-18,no
description,HIP116, Rad5p N-terminal; HIRAN,HIP116, Rad5p
N-terminal,CUFF.15629.1
         (260 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein | chr5:75...   270   1e-72
AT5G43530.1 | Symbols:  | Helicase protein with RING/U-box domai...    98   7e-21

>AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein |
           chr5:7565374-7570871 REVERSE LENGTH=1029
          Length = 1029

 Score =  270 bits (689), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 146/276 (52%), Positives = 186/276 (67%), Gaps = 31/276 (11%)

Query: 1   MGSKVSDHHLSTVRSIVGPEFTDMEIIRALHMAKNDVTAAINIIFDTQTHTPKSKPTRST 60
           MG+KVSD  +STVRS+VG +++DM+IIRALHMA +D TAAINIIFDT +    +KP  +T
Sbjct: 1   MGTKVSDDLVSTVRSVVGSDYSDMDIIRALHMANHDPTAAINIIFDTPSF---AKPDVAT 57

Query: 61  ATKPRRVSPPKSTPNAVAAIT------------------DIDGGASSSCPVGPDDWWFVG 102
            T P   +  K   + +   T                   ++GG   S  V  ++WWFVG
Sbjct: 58  PT-PSGSNGGKRVDSGLKGCTFGDSGSVGANHRVEEENESVNGGGEES--VSGNEWWFVG 114

Query: 103 CGEVAGVATCKGRTVKSGDAVVFRFPNKK---PSASPSTAKGFGR---AAATCTEIVRFS 156
           C E+AG++TCKGR +KSGD +VF FP+ K   P  +P   +GFGR   A    ++IVRFS
Sbjct: 115 CSELAGLSTCKGRKLKSGDELVFTFPHSKGLKPETTPG-KRGFGRGRPALRGASDIVRFS 173

Query: 157 TEPAGEIGRIPNEWARCLLPLVRDNKVKVEGLCKFAPDVLGIMDTIALSVSVFINRSMFV 216
           T+ +GEIGRIPNEWARCLLPLVRD K+++EG CK AP+ L IMDTI LSVSV+IN SMF 
Sbjct: 174 TKDSGEIGRIPNEWARCLLPLVRDKKIRIEGSCKSAPEALSIMDTILLSVSVYINSSMFQ 233

Query: 217 KRHQVSLKDATSSTDESVFHPLPTLFRLLGLSPFKK 252
           K    S K A+++ +ES+FHPLP LFRLLGL PFKK
Sbjct: 234 KHSATSFKTASNTAEESMFHPLPNLFRLLGLIPFKK 269


>AT5G43530.1 | Symbols:  | Helicase protein with RING/U-box domain |
           chr5:17489327-17494830 FORWARD LENGTH=1277
          Length = 1277

 Score = 97.8 bits (242), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 56/156 (35%), Positives = 81/156 (51%), Gaps = 14/156 (8%)

Query: 97  DWWFVGCGEVAGVATCKGRTVKSGDAVVFRFPNKKPSASPSTAKGFGRAAATCTEIVRFS 156
           DW+ VG   V   +T KGR ++  + V F F +      P+              IVRFS
Sbjct: 395 DWYLVGRSLVTATSTSKGRKLEDNEIVNFTFSSVAKWKVPN--------------IVRFS 440

Query: 157 TEPAGEIGRIPNEWARCLLPLVRDNKVKVEGLCKFAPDVLGIMDTIALSVSVFINRSMFV 216
           T+  GEIGR+P EW+   + L+R  KVK+ G C  AP  L +M  I L VS +I+ S+F 
Sbjct: 441 TKRCGEIGRLPMEWSNWAVSLLRSGKVKMLGRCVAAPPFLTMMQEIMLYVSFYIHSSIFT 500

Query: 217 KRHQVSLKDATSSTDESVFHPLPTLFRLLGLSPFKK 252
              + + +  +S   ES  HPL  LF+ L + P++K
Sbjct: 501 DVSKSTWRIGSSPNLESTLHPLLQLFKHLTIKPYQK 536