Miyakogusa Predicted Gene

Lj0g3v0238209.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0238209.1 tr|B6TTK7|B6TTK7_MAIZE Actin associated protein
OS=Zea mays PE=2 SV=1,39.87,3e-18,seg,NULL,CUFF.15615.1
         (123 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G18910.1 | Symbols:  | hydroxyproline-rich glycoprotein famil...   120   2e-28

>AT2G18910.1 | Symbols:  | hydroxyproline-rich glycoprotein family
           protein | chr2:8193016-8194131 REVERSE LENGTH=131
          Length = 131

 Score =  120 bits (302), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 64/115 (55%), Positives = 69/115 (60%), Gaps = 4/115 (3%)

Query: 1   MAVNSE-STPPPVIGKIGPYTVFMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVP 59
           M +N + STPPPVIGKIGPYTVFM                                  V 
Sbjct: 1   MPINKDPSTPPPVIGKIGPYTVFMTPPATPKPPESPSAVSQKPVMAPPVLPPPQQFKSV- 59

Query: 60  SSAKSFSDGSVSGFFRNAVTKVHNAHSSLDDHLARWFGLNQSKYQWALDDYYESK 114
             A S  DGSV GFF+NAVTKV NAHSS+DDHL RWFGLNQSKYQWALD+YYESK
Sbjct: 60  --ASSDQDGSVLGFFKNAVTKVQNAHSSVDDHLVRWFGLNQSKYQWALDEYYESK 112