Miyakogusa Predicted Gene
- Lj0g3v0237499.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0237499.1 Non Chatacterized Hit- tr|I1M955|I1M955_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,85.94,0,F-box-like,NULL; GB DEF: HYPOTHETICAL PROTEIN F4I10.140
(HYPOTHETICAL PROTEIN AT4G33210),NULL; F-BOX,CUFF.15567.1
(959 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G33210.1 | Symbols: SLOMO | F-box family protein | chr4:16015... 1088 0.0
AT4G15475.1 | Symbols: | F-box/RNI-like superfamily protein | c... 83 1e-15
AT5G25350.1 | Symbols: EBF2 | EIN3-binding F box protein 2 | chr... 73 9e-13
AT2G25490.1 | Symbols: EBF1, FBL6 | EIN3-binding F box protein 1... 67 5e-11
AT1G77000.2 | Symbols: SKP2B | RNI-like superfamily protein | ch... 61 4e-09
AT1G77000.1 | Symbols: ATSKP2;2, SKP2B | RNI-like superfamily pr... 61 4e-09
AT5G27920.1 | Symbols: | F-box family protein | chr5:9942063-99... 58 4e-08
AT5G01720.1 | Symbols: | RNI-like superfamily protein | chr5:26... 57 5e-08
AT1G21410.1 | Symbols: SKP2A | F-box/RNI-like superfamily protei... 57 9e-08
AT5G23340.1 | Symbols: | RNI-like superfamily protein | chr5:78... 54 4e-07
>AT4G33210.1 | Symbols: SLOMO | F-box family protein |
chr4:16015971-16020697 REVERSE LENGTH=990
Length = 990
Score = 1088 bits (2815), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 575/912 (63%), Positives = 681/912 (74%), Gaps = 17/912 (1%)
Query: 48 LLPGEDVAPPLVPA---SADEESHDLSHKRAKFYADFEFDESHFATPASSSGGKCAYVSS 104
L+ GE + + A + +E HD HKRAK Y+ E + SS G VSS
Sbjct: 86 LVQGESSSNVVAEAEDCTMEEADHDSYHKRAKVYSGLA--ECRSVSGVSSDAGN--SVSS 141
Query: 105 ESGGHDYFQGSPLRLNSGMGYDAFTLMCIGGEEGNFVQDGEGNDSDISNLEDLEVRMDLT 164
+ S R ++ M F L + +G+D+ S+ ED EV +DLT
Sbjct: 142 VERTVSFGIASSSRTDTDMFCQNFIL----NYNRKDGKKDDGDDNGSSDTEDFEVHIDLT 197
Query: 165 DDLLHMVFSFLDHPNLCKAARVCKQWRAASAHEDFWKSLNFEDRNISVEQFEDMCRRYPN 224
DDLLHMVFSFL+H +LC++A VC+QWR ASAHEDFW+ LNFE+ IS+EQFE+MC RYPN
Sbjct: 198 DDLLHMVFSFLNHVDLCRSAMVCRQWRVASAHEDFWRVLNFENIRISMEQFENMCSRYPN 257
Query: 225 ATAMSISG-PSIHLLVMKAITSLRNLEVLTLGRGQIADSFFLALPDCSMLRSLNINDATL 283
AT +++ G P+++ L MKA T+LRNLEVLT+G+G I++SFF AL +C+MLRS+ ++DA L
Sbjct: 258 ATEVNVYGAPAVNALAMKAATTLRNLEVLTIGKGHISESFFQALGECNMLRSVTVSDAIL 317
Query: 284 GNGIQEISVVHERLCQLQLTKCRVMRIAVRCPLLETMSLKRSNMAQVVLNCPLLHELDIG 343
GNG QEI + H+RL +L++TKCRVMR+++RCP L ++SLKRSNM+Q +LNCPLL LDI
Sbjct: 318 GNGAQEIHLSHDRLRELKITKCRVMRLSIRCPQLRSLSLKRSNMSQAMLNCPLLQLLDIA 377
Query: 344 SCHKLPDAAIRAAATSCPQLVSLDMSNCSCVSDETLREIAQNCANLSVLDASYCPNISLE 403
SCHKL DAAIR+AA SCPQL SLD+SNCSCVSDETLREIAQ CANL +L+ASYCPNISLE
Sbjct: 378 SCHKLLDAAIRSAAISCPQLESLDVSNCSCVSDETLREIAQACANLHILNASYCPNISLE 437
Query: 404 NVRLPMLTVLKLHSCEGITXXXXXXXXXXXXLEVLELDNCSLLTSVSLDLQRLTNIRLVH 463
+V LPMLTVLKLHSCEGIT LEVLELDNC+LLT+VSL L RL +I LVH
Sbjct: 438 SVHLPMLTVLKLHSCEGITSASMTWIANSPALEVLELDNCNLLTTVSLHLSRLQSISLVH 497
Query: 464 CRKFADLNLRAIMLTSILVSNCPALHRINITSNSLQKLALQKQDSLTVLALQCQSLQEVD 523
CRKF DLNL++IML+SI VSNCPAL RI ITSN+L++LALQKQ++LT L LQC SLQEVD
Sbjct: 498 CRKFTDLNLQSIMLSSITVSNCPALRRITITSNALRRLALQKQENLTTLVLQCHSLQEVD 557
Query: 524 LSECESLTNSICEVFSDGGGCPMLKSLVLDNCEXXXXXXXXXXXXXXXXXGGCRAITTLE 583
LS+CESL+NS+C++FSD GGCPMLKSL+LDNCE GCRA+T+LE
Sbjct: 558 LSDCESLSNSVCKIFSDDGGCPMLKSLILDNCESLTAVRFCNSSLASLSLVGCRAVTSLE 617
Query: 584 LTCPNLEKVILDGCDHLEKASFCPVGLRSLNLGICPKLNVLSIEALYMVSLELKGCGVLS 643
L CP +E++ LDGCDHLE A F PV LRSLNLGICPKL+VL+IEA YMVSLELKGCGVLS
Sbjct: 618 LKCPRIEQICLDGCDHLETAFFQPVALRSLNLGICPKLSVLNIEAPYMVSLELKGCGVLS 677
Query: 644 EASLNCPSLTSLDASFCSQLTDDCLSATTASCKLIESLILMSCPSIGLDGLCSLRWLPNL 703
EAS+ CP LTSLDASFCSQL DDCLSATTASC LIESL+LMSCPSIG DGL SL LPNL
Sbjct: 678 EASIMCPLLTSLDASFCSQLRDDCLSATTASCPLIESLVLMSCPSIGSDGLSSLNGLPNL 737
Query: 704 TLLDLSYTFLVNLQPVFESCPQLKVLKLQACKYLTDSSLEPLYNGGALPALEELDLSYGT 763
T+LDLSYTFL+NL+PVF+SC QLKVLKLQACKYLTDSSLEPLY GALPALEELDLSYGT
Sbjct: 738 TVLDLSYTFLMNLEPVFKSCIQLKVLKLQACKYLTDSSLEPLYKEGALPALEELDLSYGT 797
Query: 764 LCQSAIEELLSCCTHLTRVSLNGCVNMHDLNWGYSRGKIPELPGINILSIASSHNNFHEP 823
LCQ+AI++LL+CCTHLT +SLNGCVNMHDL+WG + + + G + SS +N EP
Sbjct: 798 LCQTAIDDLLACCTHLTHLSLNGCVNMHDLDWGSTSVHLFDYFG-----VYSSSDNTQEP 852
Query: 824 SEQPTRLLQNLNCVGCPNIRKVFIPSTAHCXXXXXXXXXXXXXXKEVDVAXXXXXXXXXX 883
+E RLLQNLNCVGCPNIRKV IP A KEVD+
Sbjct: 853 AETANRLLQNLNCVGCPNIRKVLIPPAARFYHLSTLNLSLSVNLKEVDLTCSNLVLLNLS 912
Query: 884 XXXXXEVLKLECPRLTSLFLQSCNTDEETVEAAISKCTMLETLDVRCCPKISSMSMGRFR 943
EVLKL CPRL SLFLQSCN DE VEAAIS C+ LETLD+R CPKISS+SM +FR
Sbjct: 913 NCCSLEVLKLGCPRLASLFLQSCNMDEAGVEAAISGCSSLETLDLRFCPKISSVSMSKFR 972
Query: 944 AACCSLKRIFSS 955
C SLKR+FSS
Sbjct: 973 TVCPSLKRVFSS 984
>AT4G15475.1 | Symbols: | F-box/RNI-like superfamily protein |
chr4:8845927-8848701 FORWARD LENGTH=610
Length = 610
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 118/500 (23%), Positives = 201/500 (40%), Gaps = 71/500 (14%)
Query: 317 LETMSLKRSNMAQVVLNCPLLHELDIGSCHKLPDAAIRAAATSCPQLVSLDMSNCSCVSD 376
+E+ SL + + + P + L + C + + + A C L SLD+ C V D
Sbjct: 122 VESSSLTDTGLTALANGFPRIENLSLIWCPNVSSVGLCSLAQKCTSLKSLDLQGCY-VGD 180
Query: 377 ETLREIAQNCANLSVLDASYCPNISLENVRLPMLTVLKLHSCEGITXXXXXXXXXXXXLE 436
+ L + + C L L+ +C L +V + L V S + I LE
Sbjct: 181 QGLAAVGKFCKQLEELNLRFCEG--LTDVGVIDLVVGCSKSLKSIGVAASAKITDLS-LE 237
Query: 437 VLELDNCSLLTSVSLDLQRLTNIRLV----HCRKFADLNLRAIMLTSILVSN----CPAL 488
+ +C LL + LD + + + L+ C + +L L+ + +T + + C +L
Sbjct: 238 AVG-SHCKLLEVLYLDSEYIHDKGLIAVAQGCHRLKNLKLQCVSVTDVAFAAVGELCTSL 296
Query: 489 HRINITS---------NSLQKLALQKQD------------SLTVLALQCQSLQEVDLSEC 527
R+ + S ++ K + + +D L +A C+ L+ V+++ C
Sbjct: 297 ERLALYSFQHFTDKGMRAIGKGSKKLKDLTLSDCYFVSCKGLEAIAHGCKELERVEINGC 356
Query: 528 ESLTNSICEVFSDGGGCPMLKSLVLDNCEXXXXXXXXXXXXXXXXXGGCRAITTLELTCP 587
++ E G CP LK L L C+ G A+ + C
Sbjct: 357 HNIGTRGIEAI--GKSCPRLKELALLYCQRI----------------GNSALQEIGKGCK 398
Query: 588 NLEKVILDGCDHLEKASFCPVGLRSLNLGICPKLNVLSIEALYMVSLELKGCGVLSEASL 647
+LE + L C + + C + C L L I Y E+ G++S
Sbjct: 399 SLEILHLVDCSGIGDIAMCSIAKG------CRNLKKLHIRRCY----EIGNKGIISIGK- 447
Query: 648 NCPSLTSLDASFCSQLTDDCLSATTASCKLIESLILMSCPSIGLDGLCSL-RWLPNLTLL 706
+C SLT L FC ++ + L A C L + L + C I G+ ++ R P LT L
Sbjct: 448 HCKSLTELSLRFCDKVGNKALIAIGKGCSL-QQLNVSGCNQISDAGITAIARGCPQLTHL 506
Query: 707 DLSYTFLVNLQPVFE---SCPQLKVLKLQACKYLTDSSLEPLYNGGALPALEELDLSY-G 762
D+S + P+ E CP LK L L C ++TD+ L L L LE + Y
Sbjct: 507 DISVLQNIGDMPLAELGEGCPMLKDLVLSHCHHITDNGLNHLVQKCKL--LETCHMVYCP 564
Query: 763 TLCQSAIEELLSCCTHLTRV 782
+ + + ++S C H+ +V
Sbjct: 565 GITSAGVATVVSSCPHIKKV 584
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 73/326 (22%), Positives = 131/326 (40%), Gaps = 63/326 (19%)
Query: 285 NGIQEISVVHERLCQLQLTKCRVMRIAVRCPLLETMSLKRSNMAQVVLNCPLLHELDIGS 344
G++ I ++L L L+ C V C LE + C L ++I
Sbjct: 310 KGMRAIGKGSKKLKDLTLSDCYF----VSCKGLEA----------IAHGCKELERVEING 355
Query: 345 CHKLPDAAIRAAATSCPQLVSLDMSNCSCVSDETLREIAQNCANLSVL---DASYCPNIS 401
CH + I A SCP+L L + C + + L+EI + C +L +L D S +I+
Sbjct: 356 CHNIGTRGIEAIGKSCPRLKELALLYCQRIGNSALQEIGKGCKSLEILHLVDCSGIGDIA 415
Query: 402 LENVRLPMLTVLKLHSCEGITXXXXXXXXXXXXLEVLELDNCSLLTSVSLDLQRLTNIRL 461
+ ++ + KLH E+ N ++ S+ + LT + L
Sbjct: 416 MCSIAKGCRNLKKLH-----------------IRRCYEIGNKGII-SIGKHCKSLTELSL 457
Query: 462 VHCRKFADLNLRAIMLTSILVSNCPALHRINITSNSLQKLALQKQDS-LTVLALQCQSLQ 520
C K + L I + +L ++N++ + Q D+ +T +A C L
Sbjct: 458 RFCDKVGNKAL-------IAIGKGCSLQQLNVSGCN------QISDAGITAIARGCPQLT 504
Query: 521 EVDLSECESLTN-SICEVFSDGGGCPMLKSLVLDNCEXXXXXXXXXXXXXXXXXGGCR-- 577
+D+S +++ + + E+ G GCPMLK LVL +C C
Sbjct: 505 HLDISVLQNIGDMPLAEL---GEGCPMLKDLVLSHCHHITDNGLNHLVQKCKLLETCHMV 561
Query: 578 --------AITTLELTCPNLEKVILD 595
+ T+ +CP+++KV+++
Sbjct: 562 YCPGITSAGVATVVSSCPHIKKVLIE 587
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 93/207 (44%), Gaps = 16/207 (7%)
Query: 227 AMSISGPSIHLLVMKAITSLRNLEVLTLGRGQIADSFFLALPDCSMLRSLNINDATLGNG 286
A+ S P + L + + N + +G+G L L DCS + +I ++ G
Sbjct: 366 AIGKSCPRLKELALLYCQRIGNSALQEIGKG-CKSLEILHLVDCSGIG--DIAMCSIAKG 422
Query: 287 IQEISVVHERLCQLQLTKCRVMRIAVRCPLLETMSL----KRSNMAQVVLN--CPLLHEL 340
+ + +H R C ++ ++ I C L +SL K N A + + C L +L
Sbjct: 423 CRNLKKLHIRRC-YEIGNKGIISIGKHCKSLTELSLRFCDKVGNKALIAIGKGCSL-QQL 480
Query: 341 DIGSCHKLPDAAIRAAATSCPQLVSLDMSNCSCVSDETLREIAQNCANLSVLDASYCPNI 400
++ C+++ DA I A A CPQL LD+S + D L E+ + C L L S+C +I
Sbjct: 481 NVSGCNQISDAGITAIARGCPQLTHLDISVLQNIGDMPLAELGEGCPMLKDLVLSHCHHI 540
Query: 401 SLENV-----RLPMLTVLKLHSCEGIT 422
+ + + +L + C GIT
Sbjct: 541 TDNGLNHLVQKCKLLETCHMVYCPGIT 567
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 93/380 (24%), Positives = 146/380 (38%), Gaps = 47/380 (12%)
Query: 578 AITTLELTCPNLEKVILDGCDHLEKASFCPVG-----LRSLNLGICPKLNVLSIEALYMV 632
+ +L C +L+ + L GC ++ VG L LNL C L + + L +
Sbjct: 157 GLCSLAQKCTSLKSLDLQGC-YVGDQGLAAVGKFCKQLEELNLRFCEGLTDVGVIDLVV- 214
Query: 633 SLELKGCGVLSEASLNCPSLTSLDASFCSQLTDDCLSATTASCKLIESLILMSCPSIGLD 692
GC SL S+ + +++TD L A + CKL+E L L S I
Sbjct: 215 -----GCS---------KSLKSIGVAASAKITDLSLEAVGSHCKLLEVLYLDS-EYIHDK 259
Query: 693 GLCSL----RWLPNLTLLDLSYTFLVNLQPVFESCPQLKVLKLQACKYLTDSSLEPLYNG 748
GL ++ L NL L +S T V V E C L+ L L + ++ TD + + G
Sbjct: 260 GLIAVAQGCHRLKNLKLQCVSVTD-VAFAAVGELCTSLERLALYSFQHFTDKGMRAIGKG 318
Query: 749 GALPALEELDLS--YGTLCQSAIEELLSCCTHLTRVSLNGCVNMHDLNWGYSRGKIPELP 806
L++L LS Y C+ +E + C L RV +NGC N+ P L
Sbjct: 319 S--KKLKDLTLSDCYFVSCK-GLEAIAHGCKELERVEINGCHNIGTRGIEAIGKSCPRLK 375
Query: 807 GINILSIASSHNNFHEPSEQPTRLLQNLNCVGCPNIRKVFIPSTAHCXXXXXXXXXXXXX 866
+ +L N+ + + + L+ L+ V C I + + S A
Sbjct: 376 ELALLYCQRIGNSALQEIGKGCKSLEILHLVDCSGIGDIAMCSIAK----------GCRN 425
Query: 867 XKEVDVAXXXXXXXXXXXXXXXEVLKLECPRLTSLFLQSCNTDEETVEAAISKCTMLETL 926
K++ + + C LT L L+ C+ AI K L+ L
Sbjct: 426 LKKLHIRRCYEIGNKGIIS-----IGKHCKSLTELSLRFCDKVGNKALIAIGKGCSLQQL 480
Query: 927 DVRCCPKISSMSMGRFRAAC 946
+V C +IS + C
Sbjct: 481 NVSGCNQISDAGITAIARGC 500
>AT5G25350.1 | Symbols: EBF2 | EIN3-binding F box protein 2 |
chr5:8794842-8796882 REVERSE LENGTH=623
Length = 623
Score = 73.2 bits (178), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 89/389 (22%), Positives = 147/389 (37%), Gaps = 55/389 (14%)
Query: 178 PNLCKAARVCKQWRAASAHEDFWKSLNFEDRNISVEQFEDMC-----RRYPNATAMS--- 229
P C + R A F+ FE++ S++ + C RR P+ S
Sbjct: 23 PGSCPGVYYPARKRLRVAATSFYS--GFEEKQTSIDVLPEECLFEILRRLPSGQERSACA 80
Query: 230 -ISGPSIHLLVMKAITSLRNLEVLTLGRGQIADSFFLALPDCSMLRSLNINDATLGNGIQ 288
+S ++LL + + + V + G+ S L + LR I T G
Sbjct: 81 CVSKHWLNLLSSISRSEVNESSVQDVEEGEGFLSRSLEGKKATDLRLAAIAVGTSSRGGL 140
Query: 289 EISVVHERLCQLQLTKCRVMRIAVRCPLLETMSL------KRSNMAQVVLNCPLLHELDI 342
+ + ++T + +A CP L +SL ++++ +CP++ +LD+
Sbjct: 141 GKLQIRGSGFESKVTDVGLGAVAHGCPSLRIVSLWNLPAVSDLGLSEIARSCPMIEKLDL 200
Query: 343 GSCHKLPDAAIRAAATSCPQLVSLDMSNCSCVSDETLREIAQNCANLSVLDASYCPNIS- 401
C + D+ + A A +C L L + +CS V +E LR IA+ C NL + CP I
Sbjct: 201 SRCPGITDSGLVAIAENCVNLSDLTIDSCSGVGNEGLRAIARRCVNLRSISIRSCPRIGD 260
Query: 402 -------------LENVRLPMLTVLKL------HSCEGITXXXXXXXXXXXXLEVLELDN 442
L V+L ML V L H +T + N
Sbjct: 261 QGVAFLLAQAGSYLTKVKLQMLNVSGLSLAVIGHYGAAVTDLVLHGLQGVNEKGFWVMGN 320
Query: 443 CSLLTSVSLDLQRLTNIRLVHCRKFADLNLRAIMLTSILVSNCPALHRINITSNSLQKLA 502
L++L ++ ++ CR D+ L A+ + CP L + SL K
Sbjct: 321 AK-------GLKKLKSLSVMSCRGMTDVGLEAVG------NGCPDLKHV-----SLNKCL 362
Query: 503 LQKQDSLTVLALQCQSLQEVDLSECESLT 531
L L LA SL+ + L EC +
Sbjct: 363 LVSGKGLVALAKSALSLESLKLEECHRIN 391
>AT2G25490.1 | Symbols: EBF1, FBL6 | EIN3-binding F box protein 1 |
chr2:10848018-10850275 REVERSE LENGTH=628
Length = 628
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 109/479 (22%), Positives = 183/479 (38%), Gaps = 76/479 (15%)
Query: 310 IAVRCPLLETMSL------KRSNMAQVVLNCPLLHELDIGSCHKLPDAAIRAAATSCPQL 363
I CP L ++SL + + ++ C L +L++ C + D + A A SCP L
Sbjct: 172 IGRSCPSLGSLSLWNVSTITDNGLLEIAEGCAQLEKLELNRCSTITDKGLVAIAKSCPNL 231
Query: 364 VSLDMSNCSCVSDETLREIAQNCANLSVLDASYCPNI--------------SLENVRLPM 409
L + CS + DE L IA++C+ L + CP + SL ++L M
Sbjct: 232 TELTLEACSRIGDEGLLAIARSCSKLKSVSIKNCPLVRDQGIASLLSNTTCSLAKLKLQM 291
Query: 410 LTVLKL------HSCEGITXXXXXXXXXXXXLEVLELDNCSLLTSVSLDLQRLTNIRLVH 463
L V + H IT + N + LQ+L ++ +
Sbjct: 292 LNVTDVSLAVVGHYGLSITDLVLAGLSHVSEKGFWVMGN-------GVGLQKLNSLTITA 344
Query: 464 CRKFADLNLRAIMLTSILVSNCPALHRINITSNSLQKLALQKQDSLTVLALQCQSLQEVD 523
C+ D+ L ++ CP + + I+ K L + L A SL+ +
Sbjct: 345 CQGVTDMGLESVG------KGCPNMKKAIIS-----KSPLLSDNGLVSFAKASLSLESLQ 393
Query: 524 LSECESLTNSICEVFSDGGGC-PMLKSLVLDNCEXXXXXXXXXXXXXXXXXGGCRAITTL 582
L EC +T F C LK+ L NC C A+ +L
Sbjct: 394 LEECHRVTQ--FGFFGSLLNCGEKLKAFSLVNC-----LSIRDLTTGLPASSHCSALRSL 446
Query: 583 EL-TCPNLEKVILDG----CDHLEKASFCPVGLRSLNLGICPKLNVLSIEALYMVSLELK 637
+ CP L C LE C GL+ + + L + +V +
Sbjct: 447 SIRNCPGFGDANLAAIGKLCPQLEDIDLC--GLKGIT-----ESGFLHLIQSSLVKINFS 499
Query: 638 GCGVLSE------ASLNCPSLTSLDASFCSQLTDDCLSATTASCKLIESLILMSCP--SI 689
GC L++ + N +L L+ CS +TD L + A+C+++ L + C
Sbjct: 500 GCSNLTDRVISAITARNGWTLEVLNIDGCSNITDASLVSIAANCQILSDLDISKCAISDS 559
Query: 690 GLDGLCSLRWLPNLTLLDLSYTFLV---NLQPVFESCPQLKVLKLQACKYLTDSSLEPL 745
G+ L S L L +L ++ +V +L + L L LQ C+ +++S+++ L
Sbjct: 560 GIQALASSDKL-KLQILSVAGCSMVTDKSLPAIVGLGSTLLGLNLQQCRSISNSTVDFL 617
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 126/559 (22%), Positives = 218/559 (38%), Gaps = 113/559 (20%)
Query: 301 QLTKCRVMRIAVRCPL---LETMSLKRSNMAQVV--------LNCPLLHELDIGSCHKLP 349
+ T R+ IAV L +S++ SN A+V +CP L L + + +
Sbjct: 132 KATDVRLAAIAVGTAGRGGLGKLSIRGSNSAKVSDLGLRSIGRSCPSLGSLSLWNVSTIT 191
Query: 350 DAAIRAAATSCPQLVSLDMSNCSCVSDETLREIAQNCANLSVLDASYCPNISLENVRLPM 409
D + A C QL L+++ CS ++D+ L IA++C NL+ L C I E +
Sbjct: 192 DNGLLEIAEGCAQLEKLELNRCSTITDKGLVAIAKSCPNLTELTLEACSRIGDEG----L 247
Query: 410 LTVLKLHSCEGITXXXXXXXXXXXXLEVLELDNCSLLTSVSLDLQRLTNIRLVHCRKFAD 469
L + + SC L+ + + NC L+ Q + ++ A
Sbjct: 248 LAIAR--SCS--------------KLKSVSIKNCPLVRD-----QGIASLLSNTTCSLAK 286
Query: 470 LNLRAIMLTSILVSNCPALHRINITSNSLQKLALQKQDSLTVL--ALQCQSLQEVDLSEC 527
L L+ + +T + ++ + ++IT L L+ + V+ + Q L + ++ C
Sbjct: 287 LKLQMLNVTDVSLA-VVGHYGLSITDLVLAGLSHVSEKGFWVMGNGVGLQKLNSLTITAC 345
Query: 528 ESLTNSICEVFSDGGGCPMLKSLVLDNCEXXXXXXXXXXXXXXXXXGGCRAITTLELTCP 587
+ +T+ E S G GCP +K ++ + +
Sbjct: 346 QGVTDMGLE--SVGKGCPNMKKAIISKSPLLSD----------------NGLVSFAKASL 387
Query: 588 NLEKVILDGCDHLEKASF------CPVGLRSLNLGICPKLNVLSIEALYMVSLELKGCGV 641
+LE + L+ C + + F C L++ +L +N LSI L G+
Sbjct: 388 SLESLQLEECHRVTQFGFFGSLLNCGEKLKAFSL-----VNCLSIRDLTT--------GL 434
Query: 642 LSEASLNCPSLTSLDASFCSQLTDDCLSATTASCKLIESLILMSCPSIGLDGLCSLRWLP 701
AS +C +L SL C D L+A C +E + LC L+ +
Sbjct: 435 --PASSHCSALRSLSIRNCPGFGDANLAAIGKLCPQLEDI-----------DLCGLKGIT 481
Query: 702 NLTLLDLSYTFLVNLQPVFESCPQ----------------LKVLKLQACKYLTDSSLEPL 745
L L + LV + F C L+VL + C +TD+SL +
Sbjct: 482 ESGFLHLIQSSLVKIN--FSGCSNLTDRVISAITARNGWTLEVLNIDGCSNITDASLVSI 539
Query: 746 YNGGALPALEELDLSYGTLCQSAIEELLSCCT-HLTRVSLNGCVNMHDLNWGYSRGKIPE 804
+ L +LD+S + S I+ L S L +S+ GC + D + G
Sbjct: 540 AANCQI--LSDLDISKCAISDSGIQALASSDKLKLQILSVAGCSMVTDKSLPAIVGLGST 597
Query: 805 LPGINI---LSIASSHNNF 820
L G+N+ SI++S +F
Sbjct: 598 LLGLNLQQCRSISNSTVDF 616
>AT1G77000.2 | Symbols: SKP2B | RNI-like superfamily protein |
chr1:28940888-28942401 FORWARD LENGTH=360
Length = 360
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 119/258 (46%), Gaps = 43/258 (16%)
Query: 162 DLTDDLLHMVFSFLDHPNLCKAARVCKQWRAASAHEDFWKSLNFEDRNISVEQFEDMCRR 221
D+ +LL + + +D + A+ +C WR A SL ++S C++
Sbjct: 30 DIPVELLMKILNLVDDRTVIIASCICSGWRDAV-------SLGLTRLSLS------WCKK 76
Query: 222 YPNATAMSISGPSIHL--LVMK---------AITSLRN----LEVLTLGRG-QIADSFFL 265
N+ +S++ + L LV++ A+ ++ N L+ L L + +I D
Sbjct: 77 NMNSLVLSLAPKFVKLQTLVLRQDKPQLEDNAVEAIANHCHELQDLDLSKSSKITDHSLY 136
Query: 266 ALP-DCSMLRSLNINDATLGNGIQEISVVHERLCQLQLTK-CRVMRIAVRCPLLETMSLK 323
+L C+ L LN++ T + ++ H LT+ CR ++I C +E +S
Sbjct: 137 SLARGCTNLTKLNLSGCT---SFSDTALAH-------LTRFCRKLKILNLCGCVEAVS-- 184
Query: 324 RSNMAQVVLNCPLLHELDIGSCHKLPDAAIRAAATSCPQLVSLDMSNCSCVSDETLREIA 383
+ + + NC L L++G C + D + + A CP L +LD+ +C ++DE++ +A
Sbjct: 185 DNTLQAIGENCNQLQSLNLGWCENISDDGVMSLAYGCPDLRTLDLCSCVLITDESVVALA 244
Query: 384 QNCANLSVLDASYCPNIS 401
C +L L YC NI+
Sbjct: 245 NRCIHLRSLGLYYCRNIT 262
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 86/195 (44%), Gaps = 9/195 (4%)
Query: 604 SFCPVGLRSLNLGICPKLNVLSIEALYMVSLELKGCGVLSEASLNCPSLTSLDASFCSQL 663
S+C + SL L + PK L L +L+ V + A+ +C L LD S S++
Sbjct: 72 SWCKKNMNSLVLSLAPKFVKLQTLVLRQDKPQLEDNAVEAIAN-HCHELQDLDLSKSSKI 130
Query: 664 TDDCLSATTASCKLIESLILMSCPSIGLDGLCSL-RWLPNLTLLDLSYTFLV----NLQP 718
TD L + C + L L C S L L R+ L +L+L LQ
Sbjct: 131 TDHSLYSLARGCTNLTKLNLSGCTSFSDTALAHLTRFCRKLKILNLCGCVEAVSDNTLQA 190
Query: 719 VFESCPQLKVLKLQACKYLTDSSLEPLYNGGALPALEELDL-SYGTLCQSAIEELLSCCT 777
+ E+C QL+ L L C+ ++D + L G P L LDL S + ++ L + C
Sbjct: 191 IGENCNQLQSLNLGWCENISDDGVMSLAYG--CPDLRTLDLCSCVLITDESVVALANRCI 248
Query: 778 HLTRVSLNGCVNMHD 792
HL + L C N+ D
Sbjct: 249 HLRSLGLYYCRNITD 263
>AT1G77000.1 | Symbols: ATSKP2;2, SKP2B | RNI-like superfamily
protein | chr1:28940888-28942401 FORWARD LENGTH=360
Length = 360
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 119/258 (46%), Gaps = 43/258 (16%)
Query: 162 DLTDDLLHMVFSFLDHPNLCKAARVCKQWRAASAHEDFWKSLNFEDRNISVEQFEDMCRR 221
D+ +LL + + +D + A+ +C WR A SL ++S C++
Sbjct: 30 DIPVELLMKILNLVDDRTVIIASCICSGWRDAV-------SLGLTRLSLS------WCKK 76
Query: 222 YPNATAMSISGPSIHL--LVMK---------AITSLRN----LEVLTLGRG-QIADSFFL 265
N+ +S++ + L LV++ A+ ++ N L+ L L + +I D
Sbjct: 77 NMNSLVLSLAPKFVKLQTLVLRQDKPQLEDNAVEAIANHCHELQDLDLSKSSKITDHSLY 136
Query: 266 ALP-DCSMLRSLNINDATLGNGIQEISVVHERLCQLQLTK-CRVMRIAVRCPLLETMSLK 323
+L C+ L LN++ T + ++ H LT+ CR ++I C +E +S
Sbjct: 137 SLARGCTNLTKLNLSGCT---SFSDTALAH-------LTRFCRKLKILNLCGCVEAVS-- 184
Query: 324 RSNMAQVVLNCPLLHELDIGSCHKLPDAAIRAAATSCPQLVSLDMSNCSCVSDETLREIA 383
+ + + NC L L++G C + D + + A CP L +LD+ +C ++DE++ +A
Sbjct: 185 DNTLQAIGENCNQLQSLNLGWCENISDDGVMSLAYGCPDLRTLDLCSCVLITDESVVALA 244
Query: 384 QNCANLSVLDASYCPNIS 401
C +L L YC NI+
Sbjct: 245 NRCIHLRSLGLYYCRNIT 262
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 86/195 (44%), Gaps = 9/195 (4%)
Query: 604 SFCPVGLRSLNLGICPKLNVLSIEALYMVSLELKGCGVLSEASLNCPSLTSLDASFCSQL 663
S+C + SL L + PK L L +L+ V + A+ +C L LD S S++
Sbjct: 72 SWCKKNMNSLVLSLAPKFVKLQTLVLRQDKPQLEDNAVEAIAN-HCHELQDLDLSKSSKI 130
Query: 664 TDDCLSATTASCKLIESLILMSCPSIGLDGLCSL-RWLPNLTLLDLSYTFLV----NLQP 718
TD L + C + L L C S L L R+ L +L+L LQ
Sbjct: 131 TDHSLYSLARGCTNLTKLNLSGCTSFSDTALAHLTRFCRKLKILNLCGCVEAVSDNTLQA 190
Query: 719 VFESCPQLKVLKLQACKYLTDSSLEPLYNGGALPALEELDL-SYGTLCQSAIEELLSCCT 777
+ E+C QL+ L L C+ ++D + L G P L LDL S + ++ L + C
Sbjct: 191 IGENCNQLQSLNLGWCENISDDGVMSLAYG--CPDLRTLDLCSCVLITDESVVALANRCI 248
Query: 778 HLTRVSLNGCVNMHD 792
HL + L C N+ D
Sbjct: 249 HLRSLGLYYCRNITD 263
>AT5G27920.1 | Symbols: | F-box family protein |
chr5:9942063-9944507 REVERSE LENGTH=642
Length = 642
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 124/524 (23%), Positives = 204/524 (38%), Gaps = 79/524 (15%)
Query: 311 AVRCPLLETMSLKRSNMAQVVLNCPLLHELDIGSCHKLPDAAIRAAATSCPQLVSLDMSN 370
AVR LET++ C L +D+ C D AA +S L L M
Sbjct: 107 AVRARGLETLARM----------CHALERVDVSHCWGFGDREA-AALSSATGLRELKMDK 155
Query: 371 CSCVSDETLREIAQNCANLSVLDASYCPNISLENVRLPMLTVLKLHSCE----GITXXXX 426
C +SD L I C+NL+ + +C IS + L L S + IT
Sbjct: 156 CLSLSDVGLARIVVGCSNLNKISLKWCMEISDLGIDLLCKICKGLKSLDVSYLKITNDSI 215
Query: 427 XXXXXXXXLEVLELDNCSLLTSVSLDLQR-----LTNIRLVHCRKFADLNLRAIMLTSIL 481
LEVL++ +C L+ L L + + C + + L +I+
Sbjct: 216 RSIALLVKLEVLDMVSCPLIDDGGLQFLENGSPSLQEVDVTRCDRVSLSGLISIVRGHPD 275
Query: 482 VSNCPALHRINITSNSLQKL--ALQKQDSLTV------------LALQCQSLQEVDLSEC 527
+ A H ++ S S K L+ ++ + L+ C+SL E+ LS C
Sbjct: 276 IQLLKASHCVSEVSGSFLKYIKGLKHLKTIWIDGAHVSDSSLVSLSSSCRSLMEIGLSRC 335
Query: 528 ESLTNSICEVFSDGGGCPMLKSLVLDNCEXXXXXXXXXXXXXXXXXGGCRAITTLELTCP 587
+T+ + S C LK+L L C AI+ + +C
Sbjct: 336 VDVTD--IGMISLARNCLNLKTLNLACCGFVTDV----------------AISAVAQSCR 377
Query: 588 NLEKVILDGCDHLEKASFCPVG-----LRSLNLGICPKLNVLSIEALYMVS----LELKG 638
NL + L+ C + + +G ++ L+L C +N +E + S L+L
Sbjct: 378 NLGTLKLESCHLITEKGLQSLGCYSMLVQELDLTDCYGVNDRGLEYISKCSNLQRLKLGL 437
Query: 639 CGVLSEASL-----NCPSLTSLDASFCSQLTDDCLSATTASCKLIESLILMSC---PSIG 690
C +S+ + C L LD C+ DD L+A + CK + LIL C G
Sbjct: 438 CTNISDKGIFHIGSKCSKLLELDLYRCAGFGDDGLAALSRGCKSLNRLILSYCCELTDTG 497
Query: 691 LDGLCSLRWLPNLTLLDLSYTFLVNLQPVFESCPQLKVLKLQACKYLTDSSLEPLYNGGA 750
++ + L L +L L L V L + C +L L ++ C+ + DS L
Sbjct: 498 VEQIRQLELLSHLELRGLKNITGVGLAAIASGCKKLGYLDVKLCENIDDSGFWALAYFS- 556
Query: 751 LPALEELDLSYGTLCQSAIEELLSCCT--------HLTRVSLNG 786
L +++L ++ +A+ L+S + HL+RV++ G
Sbjct: 557 -KNLRQINLCNCSVSDTALCMLMSNLSRVQDVDLVHLSRVTVEG 599
>AT5G01720.1 | Symbols: | RNI-like superfamily protein |
chr5:267118-270391 REVERSE LENGTH=665
Length = 665
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 121/290 (41%), Gaps = 46/290 (15%)
Query: 259 IADSFFLALPDCSMLRSLNINDATLG-NGIQEISVVHERLCQLQLTKCRVMRIAVRCPLL 317
I+ F +L S L+S+ ++ ++ +G++ I + L ++ L+KC
Sbjct: 292 ISLDFASSLKKVSALQSIRLDGCSVTPDGLKAIGTLCNSLKEVSLSKC------------ 339
Query: 318 ETMSLKRSNMAQVVLNCPLLHELDIGSCHKLPDAAIRAAATSCPQLVSLDMSNCSCVSDE 377
+S+ ++ +V+ L +LDI C KL +I A SCP LVSL M +CS VS E
Sbjct: 340 --VSVTDEGLSSLVMKLKDLRKLDITCCRKLSRVSITQIANSCPLLVSLKMESCSLVSRE 397
Query: 378 TLREIAQNCANLSVLDASYCPNISLENVRLPMLTVLKLHSCEGITXXXXXXXXXXXXLEV 437
I Q C L LD + I E ++ + GI +
Sbjct: 398 AFWLIGQKCRLLEELDLTD-NEIDDEGLKSISSCLSLSSLKLGICLNITDKGLSYIGMGC 456
Query: 438 LELDNCSLLTSVSL-DLQ---------RLTNIRLVHCRKFADLNLRAIMLTSILVS---- 483
L L SV + D+ L I + +C+ D +L ++ S+L +
Sbjct: 457 SNLRELDLYRSVGITDVGISTIAQGCIHLETINISYCQDITDKSLVSLSKCSLLQTFESR 516
Query: 484 NCPALHRINITSNSLQKLALQKQDSLTVLALQCQSLQEVDLSECESLTNS 533
CP NITS L +A++C+ L +VDL +C S+ ++
Sbjct: 517 GCP-----NITSQ-----------GLAAIAVRCKRLAKVDLKKCPSINDA 550
>AT1G21410.1 | Symbols: SKP2A | F-box/RNI-like superfamily protein |
chr1:7497479-7499386 FORWARD LENGTH=360
Length = 360
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 113/250 (45%), Gaps = 27/250 (10%)
Query: 162 DLTDDLLHMVFSFLDHPNLCKAARVCKQWRAASAHEDFWKSLNFEDRNIS------VEQF 215
D+ +LL + S +D N+ A+ VC WR A + L++ + N++ V +F
Sbjct: 30 DIPVELLMRILSLVDDRNVIVASGVCTGWRDAISFGLTRLRLSWCNNNMNSLVLSLVPKF 89
Query: 216 EDMCRRYPNATAMSISGPSIHLLVMKAITS-LRNLEVLTLGRG-QIADSFFLALPD-CSM 272
+ + P + ++AI + L+ L L + +I D AL C
Sbjct: 90 VKL-----QTLNLRQDKPQLEDNAVEAIANHCHELQELDLSKSLKITDRSLYALAHGCPD 144
Query: 273 LRSLNINDATLGNGIQEISVVHERLCQLQLTK-CRVMRIAVRCPLLETMSLKRSNMAQVV 331
L LN++ T + ++ + LT+ CR +++ C ++ ++ + + +
Sbjct: 145 LTKLNLSGCT---SFSDTAIAY-------LTRFCRKLKVLNLCGCVKAVT--DNALEAIG 192
Query: 332 LNCPLLHELDIGSCHKLPDAAIRAAATSCPQLVSLDMSNCSCVSDETLREIAQNCANLSV 391
NC + L++G C + D + + A CP L +LD+ C ++DE++ +A C +L
Sbjct: 193 NNCNQMQSLNLGWCENISDDGVMSLAYGCPDLRTLDLCGCVLITDESVVALADWCVHLRS 252
Query: 392 LDASYCPNIS 401
L YC NI+
Sbjct: 253 LGLYYCRNIT 262
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 119/288 (41%), Gaps = 48/288 (16%)
Query: 297 LCQLQLTKCR------VMRIAVRCPLLETMSLKRS------NMAQVVLN-CPLLHELDIG 343
L +L+L+ C V+ + + L+T++L++ N + + N C L ELD+
Sbjct: 66 LTRLRLSWCNNNMNSLVLSLVPKFVKLQTLNLRQDKPQLEDNAVEAIANHCHELQELDLS 125
Query: 344 SCHKLPDAAIRAAATSCPQLVSLDMSNCSCVSDETLREIAQNCANLSVLDASYCPNISLE 403
K+ D ++ A A CP L L++S C+ SD + + + C L VL+ C +
Sbjct: 126 KSLKITDRSLYALAHGCPDLTKLNLSGCTSFSDTAIAYLTRFCRKLKVLNLCGCVKAVTD 185
Query: 404 NVRLPM------LTVLKLHSCEGITXXXXXXXXXX-XXLEVLELDNCSLLTSVSLDL--- 453
N + + L L CE I+ L L+L C L+T S+
Sbjct: 186 NALEAIGNNCNQMQSLNLGWCENISDDGVMSLAYGCPDLRTLDLCGCVLITDESVVALAD 245
Query: 454 --QRLTNIRLVHCRKFADLNLRAIMLTSILVSNCPALHRINITSNSLQKLALQKQDSLTV 511
L ++ L +CR D + ++ + V N P S + + K D
Sbjct: 246 WCVHLRSLGLYYCRNITDRAMYSLAQSG--VKNKPG---------SWKSVKKGKYDE--- 291
Query: 512 LALQCQSLQEVDLSECESLTNS----ICEVFSDGGGCPMLKSLVLDNC 555
+ L+ +++S+C +LT S +C+ F C SLV+ C
Sbjct: 292 -----EGLRSLNISQCTALTPSAVQAVCDSFPALHTCSGRHSLVMSGC 334
>AT5G23340.1 | Symbols: | RNI-like superfamily protein |
chr5:7856314-7857983 FORWARD LENGTH=405
Length = 405
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 106/240 (44%), Gaps = 37/240 (15%)
Query: 335 PLLHELDIGSCHKLPDAAIRAAATSCPQLVSLDMSNCSCVSDETLREIAQNCANLSVLDA 394
LL LD+ C KL D + A A C L +L ++ C ++DE+L+ +++ C +L L
Sbjct: 124 SLLQFLDVSYCRKLSDKGLSAVAEGCHDLRALHLAGCRFITDESLKSLSERCRDLEALGL 183
Query: 395 SYCPNISLENVRLPMLTVLKLHSCE-------GITXXXXXXXXXXXXLEVLELDNC---- 443
C NI+ + + K+ S + G L+ L+L +C
Sbjct: 184 QGCTNITDSGLADLVKGCRKIKSLDINKCSNVGDAGVSSVAKACASSLKTLKLLDCYKVG 243
Query: 444 -SLLTSVSLDLQRLTNIRLVHCRKFADLNLRAIMLTSILVSNCPALHRINITSNSLQKLA 502
++S++ + L + + CR +D +IML L +C +SL+ L
Sbjct: 244 NESISSLAQFCKNLETLIIGGCRDISD---ESIML---LADSCK---------DSLKNLR 288
Query: 503 LQ-----KQDSLTVLALQCQSLQEVDLSECESLTNSICEVFSDGGGCPM--LKSLVLDNC 555
+ SL+ + QC++L+ +D+ CE +T++ F D G + LK L + NC
Sbjct: 289 MDWCLNISDSSLSCILKQCKNLEALDIGCCEEVTDT---AFRDLGSDDVLGLKVLKVSNC 345