Miyakogusa Predicted Gene

Lj0g3v0237359.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0237359.2 Non Chatacterized Hit- tr|I3SL73|I3SL73_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,61.97,0.0000000000002,Cullin repeat-like,Cullin
repeat-like-containing domain; Cullin,Cullin, N-terminal;
CULLIN-RELATED,N,CUFF.15556.2
         (79 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G02570.4 | Symbols: CUL1 | cullin 1 | chr4:1129315-1133435 FO...    64   2e-11
AT4G02570.3 | Symbols: ATCUL1, CUL1, AXR6 | cullin 1 | chr4:1129...    64   2e-11
AT4G02570.2 | Symbols: ATCUL1, CUL1, AXR6 | cullin 1 | chr4:1129...    64   2e-11
AT4G02570.1 | Symbols: ATCUL1, CUL1, AXR6 | cullin 1 | chr4:1129...    64   2e-11
AT1G43140.1 | Symbols:  | Cullin family protein | chr1:16232785-...    58   1e-09
AT1G59790.1 | Symbols:  | Cullin family protein | chr1:22001504-...    54   2e-08
AT1G02980.1 | Symbols: CUL2, ATCUL2 | cullin 2 | chr1:677869-681...    51   1e-07

>AT4G02570.4 | Symbols: CUL1 | cullin 1 | chr4:1129315-1133435
           FORWARD LENGTH=738
          Length = 738

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 45/71 (63%)

Query: 2   VLPSLQVKKDRQLLIELLRTWSNYKLMTKWLSLSFCYLNRYYIPNKNLTSTEETSFLIFY 61
           VLP+L+ K D  +L EL + WSN+K+M +WLS  F YL+RY+I  ++L    E     F 
Sbjct: 78  VLPALREKHDEFMLRELFKRWSNHKVMVRWLSRFFYYLDRYFIARRSLPPLNEVGLTCFR 137

Query: 62  DLVGDEILRKV 72
           DLV +E+  KV
Sbjct: 138 DLVYNELHSKV 148


>AT4G02570.3 | Symbols: ATCUL1, CUL1, AXR6 | cullin 1 |
           chr4:1129315-1133435 FORWARD LENGTH=738
          Length = 738

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 45/71 (63%)

Query: 2   VLPSLQVKKDRQLLIELLRTWSNYKLMTKWLSLSFCYLNRYYIPNKNLTSTEETSFLIFY 61
           VLP+L+ K D  +L EL + WSN+K+M +WLS  F YL+RY+I  ++L    E     F 
Sbjct: 78  VLPALREKHDEFMLRELFKRWSNHKVMVRWLSRFFYYLDRYFIARRSLPPLNEVGLTCFR 137

Query: 62  DLVGDEILRKV 72
           DLV +E+  KV
Sbjct: 138 DLVYNELHSKV 148


>AT4G02570.2 | Symbols: ATCUL1, CUL1, AXR6 | cullin 1 |
           chr4:1129315-1133435 FORWARD LENGTH=738
          Length = 738

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 45/71 (63%)

Query: 2   VLPSLQVKKDRQLLIELLRTWSNYKLMTKWLSLSFCYLNRYYIPNKNLTSTEETSFLIFY 61
           VLP+L+ K D  +L EL + WSN+K+M +WLS  F YL+RY+I  ++L    E     F 
Sbjct: 78  VLPALREKHDEFMLRELFKRWSNHKVMVRWLSRFFYYLDRYFIARRSLPPLNEVGLTCFR 137

Query: 62  DLVGDEILRKV 72
           DLV +E+  KV
Sbjct: 138 DLVYNELHSKV 148


>AT4G02570.1 | Symbols: ATCUL1, CUL1, AXR6 | cullin 1 |
           chr4:1129315-1133435 FORWARD LENGTH=738
          Length = 738

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 45/71 (63%)

Query: 2   VLPSLQVKKDRQLLIELLRTWSNYKLMTKWLSLSFCYLNRYYIPNKNLTSTEETSFLIFY 61
           VLP+L+ K D  +L EL + WSN+K+M +WLS  F YL+RY+I  ++L    E     F 
Sbjct: 78  VLPALREKHDEFMLRELFKRWSNHKVMVRWLSRFFYYLDRYFIARRSLPPLNEVGLTCFR 137

Query: 62  DLVGDEILRKV 72
           DLV +E+  KV
Sbjct: 138 DLVYNELHSKV 148


>AT1G43140.1 | Symbols:  | Cullin family protein |
           chr1:16232785-16236109 FORWARD LENGTH=721
          Length = 721

 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 45/68 (66%), Gaps = 2/68 (2%)

Query: 2   VLPSLQVKKDRQLLIELLRTWSNYKLMTKWLSLSFC-YLNRYYIPNKNLTSTEETSFLIF 60
           VLPS++ +    +L EL++ W+N+K++ +WLS  FC YL+R+Y+  + L +  +  F  F
Sbjct: 87  VLPSMRERHGEYMLRELVKRWANHKILVRWLS-RFCFYLDRFYVARRGLPTLNDVGFTSF 145

Query: 61  YDLVGDEI 68
           +DLV  EI
Sbjct: 146 HDLVYQEI 153


>AT1G59790.1 | Symbols:  | Cullin family protein |
           chr1:22001504-22003385 FORWARD LENGTH=374
          Length = 374

 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 2/65 (3%)

Query: 2   VLPSLQVKKDRQLLIELLRTWSNYKLMTKWLSLSFCYLNRYYIPNKN--LTSTEETSFLI 59
           VLPSL+ K D  +L EL++ W+N+K+M KWLS  F Y++R+ +      + S +E     
Sbjct: 82  VLPSLREKHDEDMLRELVKRWNNHKIMVKWLSKFFVYIDRHLVRRSKIPIPSLDEVGLTC 141

Query: 60  FYDLV 64
           F DLV
Sbjct: 142 FLDLV 146


>AT1G02980.1 | Symbols: CUL2, ATCUL2 | cullin 2 | chr1:677869-681212
           FORWARD LENGTH=742
          Length = 742

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 41/71 (57%)

Query: 2   VLPSLQVKKDRQLLIELLRTWSNYKLMTKWLSLSFCYLNRYYIPNKNLTSTEETSFLIFY 61
           VLP+++ K    +L EL++ W+N K++ +WLS  F YL+R+Y    +  +     F+ F 
Sbjct: 79  VLPAIREKHGEYMLRELVKRWANQKILVRWLSHFFEYLDRFYTRRGSHPTLSAVGFISFR 138

Query: 62  DLVGDEILRKV 72
           DLV  E+  K 
Sbjct: 139 DLVYQELQSKA 149