Miyakogusa Predicted Gene

Lj0g3v0237219.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0237219.2 Non Chatacterized Hit- tr|K3ZIU2|K3ZIU2_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si026495,47.75,0.000000000000001, ,CUFF.15574.2
         (119 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G09580.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   136   3e-33
AT1G53345.1 | Symbols:  | unknown protein; INVOLVED IN: biologic...    45   8e-06

>AT5G09580.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G53345.1); Has 53 Blast hits to 53 proteins in
           12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi
           - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 1
           (source: NCBI BLink). | chr5:2972639-2974438 FORWARD
           LENGTH=393
          Length = 393

 Score =  136 bits (342), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 75/115 (65%), Positives = 87/115 (75%), Gaps = 10/115 (8%)

Query: 1   MVFVKWGMRNLTH-----SLCFRSGCRSLRSDAALEAIAKASEDKVPSIVLYNYPSFSGA 55
           M+F ++  R LT       L F +  RS RSDAALEAIA A E+KVP++VLYNYPSFSGA
Sbjct: 28  MIFRRFSGRFLTAIPDSCKLKFEAK-RSFRSDAALEAIANALEEKVPNLVLYNYPSFSGA 86

Query: 56  FSALFAHLFHTRHNLPCLILPFSS-VPFLALRVEDLCIEGLETCYLLDFLPPKEF 109
           FSALFAHL+H R  LPCLILPFSS +PF   RVEDLC+EG E CYLLDF+ PK+F
Sbjct: 87  FSALFAHLYHYRLRLPCLILPFSSLIPF---RVEDLCLEGFERCYLLDFVVPKDF 138


>AT1G53345.1 | Symbols:  | unknown protein; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; EXPRESSED IN: 8 plant structures; EXPRESSED
           DURING: 4 anthesis, F mature embryo stage, petal
           differentiation and expansion stage, E expanded
           cotyledon stage, D bilateral stage; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT5G09580.1); Has 201 Blast hits to 201 proteins
           in 75 species: Archae - 6; Bacteria - 102; Metazoa - 2;
           Fungi - 0; Plants - 47; Viruses - 7; Other Eukaryotes -
           37 (source: NCBI BLink). | chr1:19902561-19903538
           FORWARD LENGTH=325
          Length = 325

 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 2/70 (2%)

Query: 45  VLYNYPSFSGAFSALFAHLFHTRHNLPCLILPFSSVPFLALRVEDLCIEGLETCYLLDFL 104
           VLY+YP   G F+AL AHL+ +  ++P L  P  +  +  + +  L ++ +   YL DF 
Sbjct: 10  VLYHYPCHDGVFAALAAHLYFSAKSIPSLFFP--NTVYSPITINQLPLQDISHLYLFDFT 67

Query: 105 PPKEFLFKLS 114
            P  F+ ++S
Sbjct: 68  GPPGFVHQVS 77