Miyakogusa Predicted Gene
- Lj0g3v0237119.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0237119.1 tr|E1Z533|E1Z533_CHLVA Expressed protein
OS=Chlorella variabilis GN=CHLNCDRAFT_138026 PE=4
SV=1,40,0.00000000006,MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S28,NULL; no
description,NULL; MRP-S28,Ribosomal protein S24/S35,CUFF.15634.1
(321 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G18240.2 | Symbols: | Ribosomal protein S24/S35, mitochondri... 444 e-125
AT3G18240.1 | Symbols: | Ribosomal protein S24/S35, mitochondri... 444 e-125
AT4G21460.1 | Symbols: | Ribosomal protein S24/S35, mitochondri... 434 e-122
AT1G73770.2 | Symbols: | FUNCTIONS IN: molecular_function unkno... 52 5e-07
AT1G73770.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 52 5e-07
>AT3G18240.2 | Symbols: | Ribosomal protein S24/S35, mitochondrial
| chr3:6255810-6257695 FORWARD LENGTH=419
Length = 419
Score = 444 bits (1142), Expect = e-125, Method: Compositional matrix adjust.
Identities = 214/321 (66%), Positives = 263/321 (81%), Gaps = 2/321 (0%)
Query: 2 IDQYLK-GDEEVLPLIQEAILIRRLSGKHDDTDDEMMDELRMGPL-DDVSDREFEEDFEE 59
I++Y G+E+ LP + EA+L RRL KH +TDDE+++++ P DDV D +FE DFEE
Sbjct: 86 IEKYFNEGNEDALPGVIEALLQRRLVDKHAETDDELLEKIESLPFKDDVKDEDFESDFEE 145
Query: 60 AHQTDEEIDDLYNARDVVQKRMVHDEYFNMDPKKWDEIVQDGVNHGFLKDTKECEEILED 119
AH TDEE++DLYN+ + V ++M +E+FNMD KKWD ++++G+ HG L DTKECEEILED
Sbjct: 146 AHSTDEELEDLYNSPEYVAEKMRKNEFFNMDDKKWDHMIREGIQHGCLTDTKECEEILED 205
Query: 120 MLSWDKLLPDEIKQKVEIKFNELGDMCERGELEPEAAYEQFKKFEDEMVMEYMKIMEKEE 179
ML WD+LLPD++K+KVE KFNELGDMCERGE+E EAAYE FK+FEDEMV++Y ME E
Sbjct: 206 MLKWDQLLPDDLKKKVEAKFNELGDMCERGEIEAEAAYELFKEFEDEMVIQYGDQMEAEG 265
Query: 180 APQSDDTAVPDKKKESDDPPGEGPILRWVTRAVFAPGGDAWHPKNRKVKLSVTVKELGLS 239
PQ +T D+ + DDPPG+GPILRW +R VFAPGGDAWHPKNRKVK+SVTVKELGLS
Sbjct: 266 PPQFGETDASDRNTDLDDPPGKGPILRWQSRIVFAPGGDAWHPKNRKVKMSVTVKELGLS 325
Query: 240 KYQFRRLRELVGKRYHPGRDELTITSERYEHREENRKDCLRTLLSLIEEAGKANKLVDNA 299
K+Q +RLRELVGKRYH G+DELTITSER+EHREENRKDCLRTL LIEEAGKANK+ ++
Sbjct: 326 KHQAKRLRELVGKRYHSGKDELTITSERFEHREENRKDCLRTLYGLIEEAGKANKIAEDI 385
Query: 300 RTSYAKERLRANPAFMARLHA 320
RTSY K+RLRANPAFM +L A
Sbjct: 386 RTSYVKQRLRANPAFMQKLQA 406
>AT3G18240.1 | Symbols: | Ribosomal protein S24/S35, mitochondrial
| chr3:6255810-6257695 FORWARD LENGTH=419
Length = 419
Score = 444 bits (1142), Expect = e-125, Method: Compositional matrix adjust.
Identities = 214/321 (66%), Positives = 263/321 (81%), Gaps = 2/321 (0%)
Query: 2 IDQYLK-GDEEVLPLIQEAILIRRLSGKHDDTDDEMMDELRMGPL-DDVSDREFEEDFEE 59
I++Y G+E+ LP + EA+L RRL KH +TDDE+++++ P DDV D +FE DFEE
Sbjct: 86 IEKYFNEGNEDALPGVIEALLQRRLVDKHAETDDELLEKIESLPFKDDVKDEDFESDFEE 145
Query: 60 AHQTDEEIDDLYNARDVVQKRMVHDEYFNMDPKKWDEIVQDGVNHGFLKDTKECEEILED 119
AH TDEE++DLYN+ + V ++M +E+FNMD KKWD ++++G+ HG L DTKECEEILED
Sbjct: 146 AHSTDEELEDLYNSPEYVAEKMRKNEFFNMDDKKWDHMIREGIQHGCLTDTKECEEILED 205
Query: 120 MLSWDKLLPDEIKQKVEIKFNELGDMCERGELEPEAAYEQFKKFEDEMVMEYMKIMEKEE 179
ML WD+LLPD++K+KVE KFNELGDMCERGE+E EAAYE FK+FEDEMV++Y ME E
Sbjct: 206 MLKWDQLLPDDLKKKVEAKFNELGDMCERGEIEAEAAYELFKEFEDEMVIQYGDQMEAEG 265
Query: 180 APQSDDTAVPDKKKESDDPPGEGPILRWVTRAVFAPGGDAWHPKNRKVKLSVTVKELGLS 239
PQ +T D+ + DDPPG+GPILRW +R VFAPGGDAWHPKNRKVK+SVTVKELGLS
Sbjct: 266 PPQFGETDASDRNTDLDDPPGKGPILRWQSRIVFAPGGDAWHPKNRKVKMSVTVKELGLS 325
Query: 240 KYQFRRLRELVGKRYHPGRDELTITSERYEHREENRKDCLRTLLSLIEEAGKANKLVDNA 299
K+Q +RLRELVGKRYH G+DELTITSER+EHREENRKDCLRTL LIEEAGKANK+ ++
Sbjct: 326 KHQAKRLRELVGKRYHSGKDELTITSERFEHREENRKDCLRTLYGLIEEAGKANKIAEDI 385
Query: 300 RTSYAKERLRANPAFMARLHA 320
RTSY K+RLRANPAFM +L A
Sbjct: 386 RTSYVKQRLRANPAFMQKLQA 406
>AT4G21460.1 | Symbols: | Ribosomal protein S24/S35, mitochondrial
| chr4:11428530-11430390 FORWARD LENGTH=415
Length = 415
Score = 434 bits (1115), Expect = e-122, Method: Compositional matrix adjust.
Identities = 207/318 (65%), Positives = 256/318 (80%), Gaps = 1/318 (0%)
Query: 4 QYLKGDEEVLPLIQEAILIRRLSGKHDDTDDEMMDELRMGPL-DDVSDREFEEDFEEAHQ 62
+ +G+E+ LP + EA+L RRL KH +TDDE+M+++ P DDV D +FE DFEEAH
Sbjct: 85 SFNEGNEDALPGVIEALLQRRLVDKHAETDDELMEKIESLPFKDDVKDEDFESDFEEAHS 144
Query: 63 TDEEIDDLYNARDVVQKRMVHDEYFNMDPKKWDEIVQDGVNHGFLKDTKECEEILEDMLS 122
TDEE++DLYN+ + V ++M E+FNMD KWD ++++G+ HG L DTK+CEEILEDML
Sbjct: 145 TDEELEDLYNSPEYVAEKMRKKEFFNMDDNKWDHMIREGIQHGCLTDTKQCEEILEDMLK 204
Query: 123 WDKLLPDEIKQKVEIKFNELGDMCERGELEPEAAYEQFKKFEDEMVMEYMKIMEKEEAPQ 182
WD+LLPD++K+KVE KFNELGDMCERGE+E EAAYE FK+FEDEMV++Y ME E PQ
Sbjct: 205 WDQLLPDDLKKKVEAKFNELGDMCERGEIEAEAAYELFKEFEDEMVIQYGDQMEAEGPPQ 264
Query: 183 SDDTAVPDKKKESDDPPGEGPILRWVTRAVFAPGGDAWHPKNRKVKLSVTVKELGLSKYQ 242
+T D+ + DDP G+GPILRW +R VFAPGGDAWHPKNRKVK+SVTVKELGLS +Q
Sbjct: 265 FGETDTSDRNTDLDDPSGKGPILRWQSRIVFAPGGDAWHPKNRKVKMSVTVKELGLSNHQ 324
Query: 243 FRRLRELVGKRYHPGRDELTITSERYEHREENRKDCLRTLLSLIEEAGKANKLVDNARTS 302
+RLRELVGKRYH G+DELTIT ER+EHREENRKDCLRTL LIEEAGKANK+ ++ RTS
Sbjct: 325 AKRLRELVGKRYHSGKDELTITCERFEHREENRKDCLRTLYGLIEEAGKANKIAEDIRTS 384
Query: 303 YAKERLRANPAFMARLHA 320
Y K+RLRA+PAFM +L A
Sbjct: 385 YVKQRLRASPAFMQKLQA 402
>AT1G73770.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: cultured cell; BEST
Arabidopsis thaliana protein match is: Ribosomal protein
S24/S35, mitochondrial (TAIR:AT3G18240.2); Has 35333
Blast hits to 34131 proteins in 2444 species: Archae -
798; Bacteria - 22429; Metazoa - 974; Fungi - 991;
Plants - 531; Viruses - 0; Other Eukaryotes - 9610
(source: NCBI BLink). | chr1:27742215-27742956 FORWARD
LENGTH=191
Length = 191
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 34/41 (82%)
Query: 8 GDEEVLPLIQEAILIRRLSGKHDDTDDEMMDELRMGPLDDV 48
G+E+ +P + EA++IR+LSGKHDD+DDE+MD +R P++D
Sbjct: 80 GNEDAIPDLFEALMIRKLSGKHDDSDDEVMDVVRKYPVNDA 120
>AT1G73770.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: cultured cell; BEST
Arabidopsis thaliana protein match is: Ribosomal protein
S24/S35, mitochondrial (TAIR:AT3G18240.2); Has 951 Blast
hits to 569 proteins in 87 species: Archae - 0; Bacteria
- 746; Metazoa - 33; Fungi - 46; Plants - 57; Viruses -
0; Other Eukaryotes - 69 (source: NCBI BLink). |
chr1:27742215-27742956 FORWARD LENGTH=191
Length = 191
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 34/41 (82%)
Query: 8 GDEEVLPLIQEAILIRRLSGKHDDTDDEMMDELRMGPLDDV 48
G+E+ +P + EA++IR+LSGKHDD+DDE+MD +R P++D
Sbjct: 80 GNEDAIPDLFEALMIRKLSGKHDDSDDEVMDVVRKYPVNDA 120