Miyakogusa Predicted Gene

Lj0g3v0236509.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0236509.1 Non Chatacterized Hit- tr|H2XT65|H2XT65_CIOIN
Uncharacterized protein (Fragment) OS=Ciona
intestinal,45.9,5e-19,FAD/NAD(P)-binding domain,NULL; FAD
OXIDOREDUCTASE,NULL; FAD NAD BINDING OXIDOREDUCTASES,NULL;
DAO,F,CUFF.15488.1
         (159 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G67290.1 | Symbols:  | FAD-dependent oxidoreductase family pr...   196   5e-51

>AT5G67290.1 | Symbols:  | FAD-dependent oxidoreductase family
           protein | chr5:26848419-26849755 REVERSE LENGTH=406
          Length = 406

 Score =  196 bits (498), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 90/120 (75%), Positives = 106/120 (88%), Gaps = 2/120 (1%)

Query: 36  SGEVYVCGMSSEEEVPDDRDEIRGKPESIEMLKRVAKTVSSHLGEET--VKAEQACFLPC 93
           +GEVY+CGMSS+EEVPDD D++   PESI++LKRVAKTVSS+L EE   VKAEQACFLP 
Sbjct: 283 TGEVYICGMSSQEEVPDDADQVTSNPESIQVLKRVAKTVSSYLNEENALVKAEQACFLPS 342

Query: 94  TDDGVPVIGEVPGIKGCYVATGHNCWGILNGPATGGAMAELIIDGNSSIVDLKRFSPARF 153
           T+DGVPVIGE+PGIKGCYV TGH+CWGILNGPATG A+AELI+DG ++ VDL RFSP+RF
Sbjct: 343 TEDGVPVIGEIPGIKGCYVGTGHSCWGILNGPATGAALAELIVDGVATSVDLSRFSPSRF 402