Miyakogusa Predicted Gene
- Lj0g3v0236079.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0236079.1 Non Chatacterized Hit- tr|G7IP95|G7IP95_MEDTR
RNA-binding protein, putative OS=Medicago truncatula
G,79.63,0,RNA-binding domain, RBD,NULL; SUBFAMILY NOT NAMED,NULL;
FAMILY NOT NAMED,NULL; RRM,RNA recognition
m,NODE_13005_length_1565_cov_297.072845.path1.1
(476 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 398 e-111
AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 397 e-111
AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 347 7e-96
AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 347 1e-95
AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 343 2e-94
AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 343 2e-94
AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 331 7e-91
AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 328 3e-90
AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 328 3e-90
AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 328 5e-90
AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 328 5e-90
AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 233 2e-61
AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 219 3e-57
AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 184 1e-46
AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 | ch... 179 4e-45
AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 169 3e-42
AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 156 2e-38
AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 154 1e-37
AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 143 3e-34
AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 143 3e-34
AT1G33470.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 89 9e-18
AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 89 9e-18
AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 86 6e-17
AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 86 7e-17
AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 86 7e-17
AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 83 4e-16
AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 83 4e-16
AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 82 1e-15
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 81 2e-15
AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 81 2e-15
AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 80 3e-15
AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 79 7e-15
AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding | ch... 79 9e-15
AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |... 78 1e-14
AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |... 78 2e-14
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 76 6e-14
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 75 8e-14
AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 75 8e-14
AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 75 9e-14
AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:1... 75 1e-13
AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 75 1e-13
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 74 2e-13
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 74 2e-13
AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 74 3e-13
AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 74 3e-13
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 73 4e-13
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 73 4e-13
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 73 4e-13
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-... 73 4e-13
AT3G54770.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 72 6e-13
AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 72 6e-13
AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 72 6e-13
AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 72 6e-13
AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 72 6e-13
AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 72 6e-13
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 72 9e-13
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 72 1e-12
AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 72 1e-12
AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 71 1e-12
AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 70 3e-12
AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 70 4e-12
AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 70 4e-12
AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs... 70 4e-12
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |... 70 5e-12
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 69 5e-12
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 69 5e-12
AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 69 6e-12
AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 69 6e-12
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro... 69 7e-12
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 69 8e-12
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1... 69 1e-11
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |... 69 1e-11
AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 68 2e-11
AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, an... 66 5e-11
AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold, circa... 66 5e-11
AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 66 6e-11
AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 9e-11
AT5G53720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 9e-11
AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protei... 65 1e-10
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 65 1e-10
AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 2e-10
AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 3e-10
AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 3e-10
AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motif... 63 4e-10
AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 63 4e-10
AT3G06970.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 63 4e-10
AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 | chr3:5... 63 5e-10
AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein ... 62 6e-10
AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 | chr1:1... 62 6e-10
AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 7e-10
AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 7e-10
AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 8e-10
AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 9e-10
AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 2e-09
AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 3e-09
AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8... 59 6e-09
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 59 1e-08
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 59 1e-08
AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ... 58 1e-08
AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 1e-08
AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ... 58 1e-08
AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A... 57 4e-08
AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 5e-08
AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs... 56 5e-08
AT5G04810.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 56 7e-08
AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 8e-08
AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like ... 55 8e-08
AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing... 55 1e-07
AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47... 55 1e-07
AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 1e-07
AT3G13570.1 | Symbols: SCL30A, At-SCL30A | SC35-like splicing fa... 54 2e-07
AT1G55310.1 | Symbols: SR33, ATSCL33, SCL33, At-SCL33 | SC35-lik... 54 2e-07
AT2G27330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-07
AT2G16940.1 | Symbols: | Splicing factor, CC1-like | chr2:73428... 54 2e-07
AT2G16940.2 | Symbols: | Splicing factor, CC1-like | chr2:73428... 54 2e-07
AT1G55310.2 | Symbols: SR33, ATSCL33, SCL33, At-SCL33 | SC35-lik... 54 3e-07
AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29... 54 3e-07
AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29... 54 3e-07
AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29... 54 3e-07
AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29... 53 4e-07
AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid bindin... 53 5e-07
AT5G51300.3 | Symbols: | splicing factor-related | chr5:2084988... 53 5e-07
AT5G51300.2 | Symbols: | splicing factor-related | chr5:2084988... 53 5e-07
AT5G51300.1 | Symbols: | splicing factor-related | chr5:2084988... 53 5e-07
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 6e-07
AT2G21690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 7e-07
AT1G07350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 7e-07
AT1G60900.1 | Symbols: | U2 snRNP auxilliary factor, large subu... 52 1e-06
AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 | chr5:1920... 52 1e-06
AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT2G47310.1 | Symbols: | flowering time control protein-related... 50 5e-06
>AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495052 FORWARD LENGTH=494
Length = 494
Score = 398 bits (1022), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/321 (63%), Positives = 238/321 (74%), Gaps = 4/321 (1%)
Query: 1 MEMDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVA 60
M+ D GKLFIGGISWDTNEERL++YF +FG+V+EAVI+KDRTTGRARGFGFVVFADP+VA
Sbjct: 1 MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA 60
Query: 61 ERVVMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTIT 120
E V+ EKH IDGR VEAKKAVPRDDQN RT+KIFVGGLPS++T
Sbjct: 61 EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVT 120
Query: 121 ESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEV 180
ESDFK YF+QFGT TDVVVMYDHNTQRPRGFGFIT+DSEE VEKVL KTFHELNGKMVEV
Sbjct: 121 ESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEV 180
Query: 181 KRAVPKELSPSPSRGQLG-GYSYAMSRVGSFANGFTQGYNPGMVGGHGLRIDGRLSPVTV 239
KRAVPKELSP PSR LG GYSY ++RV + NG+ QG+NP VGG+GLR+DGR SPV
Sbjct: 181 KRAVPKELSPGPSRSPLGAGYSYGVNRVNNLLNGYAQGFNPAAVGGYGLRMDGRFSPVGA 240
Query: 240 GRSGYPLLSPNYGSELNFE--LPLSQNESANFTSNFVIGRALNSSYNGSPSRYNNAMGYA 297
GRSG+ S YG +NF+ LP N+ N GR ++ Y G+ +R+ A+GY
Sbjct: 241 GRSGFANYSSGYGMNVNFDQGLPTGFTGGTNYNGNVDYGRGMSPYYIGNTNRFGPAVGYE 300
Query: 298 GSSIGNNATISSSSINQNLWG 318
G + SS+ +NLWG
Sbjct: 301 -GGNGGGNSSFFSSVTRNLWG 320
>AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495102 FORWARD LENGTH=495
Length = 495
Score = 397 bits (1021), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/321 (63%), Positives = 238/321 (74%), Gaps = 4/321 (1%)
Query: 1 MEMDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVA 60
M+ D GKLFIGGISWDTNEERL++YF +FG+V+EAVI+KDRTTGRARGFGFVVFADP+VA
Sbjct: 1 MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA 60
Query: 61 ERVVMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTIT 120
E V+ EKH IDGR VEAKKAVPRDDQN RT+KIFVGGLPS++T
Sbjct: 61 EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVT 120
Query: 121 ESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEV 180
ESDFK YF+QFGT TDVVVMYDHNTQRPRGFGFIT+DSEE VEKVL KTFHELNGKMVEV
Sbjct: 121 ESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEV 180
Query: 181 KRAVPKELSPSPSRGQLG-GYSYAMSRVGSFANGFTQGYNPGMVGGHGLRIDGRLSPVTV 239
KRAVPKELSP PSR LG GYSY ++RV + NG+ QG+NP VGG+GLR+DGR SPV
Sbjct: 181 KRAVPKELSPGPSRSPLGAGYSYGVNRVNNLLNGYAQGFNPAAVGGYGLRMDGRFSPVGA 240
Query: 240 GRSGYPLLSPNYGSELNFE--LPLSQNESANFTSNFVIGRALNSSYNGSPSRYNNAMGYA 297
GRSG+ S YG +NF+ LP N+ N GR ++ Y G+ +R+ A+GY
Sbjct: 241 GRSGFANYSSGYGMNVNFDQGLPTGFTGGTNYNGNVDYGRGMSPYYIGNTNRFGPAVGYE 300
Query: 298 GSSIGNNATISSSSINQNLWG 318
G + SS+ +NLWG
Sbjct: 301 -GGNGGGNSSFFSSVTRNLWG 320
>AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445552-13447592 FORWARD LENGTH=455
Length = 455
Score = 347 bits (891), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 230/499 (46%), Positives = 286/499 (57%), Gaps = 86/499 (17%)
Query: 4 DPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV 63
D GKLFIGGISWDT+EERL++YF +GD+VEAVIM+DRTTGRARGFGF+VFADPSVAERV
Sbjct: 13 DLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERV 72
Query: 64 VMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXX-----XRTKKIFVGGLPST 118
+M+KH+IDGRTVEAKKAVPRDDQ RTKKIFVGGLPS+
Sbjct: 73 IMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSS 132
Query: 119 ITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMV 178
ITE++FKNYFDQFGTI DVVVMYDHNTQRPRGFGFITFDSEE V+ VL+KTFHELNGKMV
Sbjct: 133 ITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMV 192
Query: 179 EVKRAVPKELSP-SPSRGQLGGY--SYAM----SRVGSFANGFTQGYNPGMVGGHGLRID 231
EVKRAVPKELS +P+R L GY +Y + S S+ N F GYN +G
Sbjct: 193 EVKRAVPKELSSTTPNRSPLIGYGNNYGVVPNRSSANSYFNSFPPGYNNNNLGSA----- 247
Query: 232 GRLSPVTVGRSGYPLLSPNYGSELNFELPLSQNESANFT--SNFVIGRALNSSYNGSPSR 289
GR SP+ GR+ + ++G LN EL L+ N N S + NS+ SP+R
Sbjct: 248 GRFSPIGSGRNAF----SSFGLGLNQELNLNSNFDGNTLGYSRIPGNQYFNSA---SPNR 300
Query: 290 YNNAMGYAGSSIGNNATISSSSINQNLWGNGNLYGATNPATSNAFVGYGSENXXXXXXXX 349
YN+ +GY N + + N++LWG
Sbjct: 301 YNSPIGY------NRGDSAYNPSNRDLWG------------------------------- 323
Query: 350 XXXXXXXXXXNNQAGTIGSGYGKG-SLSYRSGDVILGSKTVD---YGRSSESTVASAPLY 405
N++ + G G+ G S+ G+ L S D YGRS + + L
Sbjct: 324 -----------NRSDSSGPGWNLGVSVGNNRGNWGLSSVVSDNNGYGRSYGAGSGLSGLS 372
Query: 406 TLSNGN-YDEAFKDTYEAGPFYRDQTWR------SSASELDD-SGSLGLGFENAVSDLMS 457
N N +D + + Y Y D TW+ S++ELD S S G G +N SD +
Sbjct: 373 FAGNTNGFDGSIGELYRGSSVYSDSTWQQSMPHHQSSNELDGLSRSYGFGIDNVGSDPSA 432
Query: 458 KGSGGHIGAYAVASRQSNR 476
S G+ G Y V +RQ++R
Sbjct: 433 NASEGYSGNYNVGNRQTHR 451
>AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445265-13447592 FORWARD LENGTH=452
Length = 452
Score = 347 bits (890), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 230/499 (46%), Positives = 286/499 (57%), Gaps = 86/499 (17%)
Query: 4 DPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV 63
D GKLFIGGISWDT+EERL++YF +GD+VEAVIM+DRTTGRARGFGF+VFADPSVAERV
Sbjct: 10 DLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERV 69
Query: 64 VMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXX-----XRTKKIFVGGLPST 118
+M+KH+IDGRTVEAKKAVPRDDQ RTKKIFVGGLPS+
Sbjct: 70 IMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSS 129
Query: 119 ITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMV 178
ITE++FKNYFDQFGTI DVVVMYDHNTQRPRGFGFITFDSEE V+ VL+KTFHELNGKMV
Sbjct: 130 ITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMV 189
Query: 179 EVKRAVPKELSP-SPSRGQLGGY--SYAM----SRVGSFANGFTQGYNPGMVGGHGLRID 231
EVKRAVPKELS +P+R L GY +Y + S S+ N F GYN +G
Sbjct: 190 EVKRAVPKELSSTTPNRSPLIGYGNNYGVVPNRSSANSYFNSFPPGYNNNNLGSA----- 244
Query: 232 GRLSPVTVGRSGYPLLSPNYGSELNFELPLSQNESANFT--SNFVIGRALNSSYNGSPSR 289
GR SP+ GR+ + ++G LN EL L+ N N S + NS+ SP+R
Sbjct: 245 GRFSPIGSGRNAF----SSFGLGLNQELNLNSNFDGNTLGYSRIPGNQYFNSA---SPNR 297
Query: 290 YNNAMGYAGSSIGNNATISSSSINQNLWGNGNLYGATNPATSNAFVGYGSENXXXXXXXX 349
YN+ +GY N + + N++LWG
Sbjct: 298 YNSPIGY------NRGDSAYNPSNRDLWG------------------------------- 320
Query: 350 XXXXXXXXXXNNQAGTIGSGYGKG-SLSYRSGDVILGSKTVD---YGRSSESTVASAPLY 405
N++ + G G+ G S+ G+ L S D YGRS + + L
Sbjct: 321 -----------NRSDSSGPGWNLGVSVGNNRGNWGLSSVVSDNNGYGRSYGAGSGLSGLS 369
Query: 406 TLSNGN-YDEAFKDTYEAGPFYRDQTWR------SSASELDD-SGSLGLGFENAVSDLMS 457
N N +D + + Y Y D TW+ S++ELD S S G G +N SD +
Sbjct: 370 FAGNTNGFDGSIGELYRGSSVYSDSTWQQSMPHHQSSNELDGLSRSYGFGIDNVGSDPSA 429
Query: 458 KGSGGHIGAYAVASRQSNR 476
S G+ G Y V +RQ++R
Sbjct: 430 NASEGYSGNYNVGNRQTHR 448
>AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 343 bits (879), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 206/469 (43%), Positives = 271/469 (57%), Gaps = 53/469 (11%)
Query: 1 MEMDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVA 60
MEM+ KLFIGGISW+T+E+RLR YF +FG+V+EAVIMKDR TGRARGFGFVVFADP+VA
Sbjct: 1 MEMESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVA 60
Query: 61 ERVVMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTIT 120
ERVV+ KH+IDG+ VEAKKAVPRDD +KKIFVGGL S++T
Sbjct: 61 ERVVLLKHIIDGKIVEAKKAVPRDDH--VVFNKSNSSLQGSPGPSNSKKIFVGGLASSVT 118
Query: 121 ESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEV 180
E++FK YF QFG ITDVVVMYDH TQRPRGFGFI++DSEE V+KVL KTFHELNGKMVEV
Sbjct: 119 EAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEV 178
Query: 181 KRAVPKELSPSPSRGQLGGYSYAMSRVGSFANGFTQGYNPGMVGGHGLRIDGRLSPVTVG 240
K AVPK+++ + R Q+ S+ SR+ S N +TQG++P + G+G++ + R SP
Sbjct: 179 KLAVPKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSPSPISGYGVKPEVRYSPAVGN 238
Query: 241 RSGYPLLSPNYGSELNFELPLSQNESANFTSNFVIGRALNSSYNGSPSRYNNAMGYAGSS 300
R G+ YG ELNFE +QN + + F R + Y S R+ + M G+S
Sbjct: 239 RGGFSPFGHGYGIELNFEPNQTQNYGSGSSGGFG--RPFSPGYAASLGRFGSQMESGGAS 296
Query: 301 IGNNATISSSSINQNLWGNGNL-YGATNPATSNAFVGYGSENXXXXXXXXXXXXXXXXXX 359
+GN + ++++ N LWGNG L Y + +P + ++F G
Sbjct: 297 VGNGSVLNAAPKNH-LWGNGGLGYMSNSPISRSSFSG--------------------NSG 335
Query: 360 NNQAGTIGSGYGKGSLSYRSGDVILGSKTVDYGRSS----ESTVASAPLYTLSNGNYDEA 415
+ G+IG +G TV RSS V + + G Y
Sbjct: 336 MSSLGSIGDNWG----------------TVARARSSYHGERGGVGLEAMRGVHVGGYSSG 379
Query: 416 FKDTYEAGPFYRDQTWRSSASELDDSGSLGLGFENAVSDLMSKGSGGHI 464
EA Y D W S ++ ++ LG+G D MS+G G+I
Sbjct: 380 -SSILEADSLYSDSMWLSLPAKAEE--GLGMG----PLDFMSRGPAGYI 421
>AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 343 bits (879), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 206/469 (43%), Positives = 271/469 (57%), Gaps = 53/469 (11%)
Query: 1 MEMDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVA 60
MEM+ KLFIGGISW+T+E+RLR YF +FG+V+EAVIMKDR TGRARGFGFVVFADP+VA
Sbjct: 1 MEMESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVA 60
Query: 61 ERVVMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTIT 120
ERVV+ KH+IDG+ VEAKKAVPRDD +KKIFVGGL S++T
Sbjct: 61 ERVVLLKHIIDGKIVEAKKAVPRDDH--VVFNKSNSSLQGSPGPSNSKKIFVGGLASSVT 118
Query: 121 ESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEV 180
E++FK YF QFG ITDVVVMYDH TQRPRGFGFI++DSEE V+KVL KTFHELNGKMVEV
Sbjct: 119 EAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEV 178
Query: 181 KRAVPKELSPSPSRGQLGGYSYAMSRVGSFANGFTQGYNPGMVGGHGLRIDGRLSPVTVG 240
K AVPK+++ + R Q+ S+ SR+ S N +TQG++P + G+G++ + R SP
Sbjct: 179 KLAVPKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSPSPISGYGVKPEVRYSPAVGN 238
Query: 241 RSGYPLLSPNYGSELNFELPLSQNESANFTSNFVIGRALNSSYNGSPSRYNNAMGYAGSS 300
R G+ YG ELNFE +QN + + F R + Y S R+ + M G+S
Sbjct: 239 RGGFSPFGHGYGIELNFEPNQTQNYGSGSSGGFG--RPFSPGYAASLGRFGSQMESGGAS 296
Query: 301 IGNNATISSSSINQNLWGNGNL-YGATNPATSNAFVGYGSENXXXXXXXXXXXXXXXXXX 359
+GN + ++++ N LWGNG L Y + +P + ++F G
Sbjct: 297 VGNGSVLNAAPKNH-LWGNGGLGYMSNSPISRSSFSG--------------------NSG 335
Query: 360 NNQAGTIGSGYGKGSLSYRSGDVILGSKTVDYGRSS----ESTVASAPLYTLSNGNYDEA 415
+ G+IG +G TV RSS V + + G Y
Sbjct: 336 MSSLGSIGDNWG----------------TVARARSSYHGERGGVGLEAMRGVHVGGYSSG 379
Query: 416 FKDTYEAGPFYRDQTWRSSASELDDSGSLGLGFENAVSDLMSKGSGGHI 464
EA Y D W S ++ ++ LG+G D MS+G G+I
Sbjct: 380 -SSILEADSLYSDSMWLSLPAKAEE--GLGMG----PLDFMSRGPAGYI 421
>AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=453
Length = 453
Score = 331 bits (848), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 179/359 (49%), Positives = 233/359 (64%), Gaps = 28/359 (7%)
Query: 1 MEMDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVA 60
MEM+ KLFIGGISW+T+E+RLR YF +FG+V+EAVIMKDR TGRARGFGFVVFADP+VA
Sbjct: 1 MEMESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVA 60
Query: 61 ERVVMEKHVIDGR----------------------TVEAKKAVPRDDQNXXXXXXXXXXX 98
ERVV+ KH+IDG+ VEAKKAVPRDD
Sbjct: 61 ERVVLLKHIIDGKILVDSIVYNQLCRSDKCISLSEVVEAKKAVPRDDH--VVFNKSNSSL 118
Query: 99 XXXXXXXRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDS 158
+KKIFVGGL S++TE++FK YF QFG ITDVVVMYDH TQRPRGFGFI++DS
Sbjct: 119 QGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDS 178
Query: 159 EEGVEKVLYKTFHELNGKMVEVKRAVPKELSPSPSRGQLGGYSYAMSRVGSFANGFTQGY 218
EE V+KVL KTFHELNGKMVEVK AVPK+++ + R Q+ S+ SR+ S N +TQG+
Sbjct: 179 EEAVDKVLQKTFHELNGKMVEVKLAVPKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGF 238
Query: 219 NPGMVGGHGLRIDGRLSPVTVGRSGYPLLSPNYGSELNFELPLSQNESANFTSNFVIGRA 278
+P + G+G++ + R SP R G+ YG ELNFE +QN + + F R
Sbjct: 239 SPSPISGYGVKPEVRYSPAVGNRGGFSPFGHGYGIELNFEPNQTQNYGSGSSGGFG--RP 296
Query: 279 LNSSYNGSPSRYNNAMGYAGSSIGNNATISSSSINQNLWGNGNL-YGATNPATSNAFVG 336
+ Y S R+ + M G+S+GN + ++++ N +LWGNG L Y + +P + ++F G
Sbjct: 297 FSPGYAASLGRFGSQMESGGASVGNGSVLNAAPKN-HLWGNGGLGYMSNSPISRSSFSG 354
>AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 328 bits (842), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 231/498 (46%), Positives = 289/498 (58%), Gaps = 76/498 (15%)
Query: 1 MEMDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVA 60
ME D GKLFIGGISWDT+EERLR YF N+GDVVEAVIM+DR TGRARGFGF+VFADP V+
Sbjct: 1 MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60
Query: 61 ERVVMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXX--RTKKIFVGGLPST 118
ERV+M+KH+IDGRTVEAKKAVPRDDQ RTKKIFVGGLPS+
Sbjct: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSS 120
Query: 119 ITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMV 178
ITE +FKNYFDQFGTI DVVVMYDHNTQRPRGFGFITFDS++ V++VL+KTFHELNGK+V
Sbjct: 121 ITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLV 180
Query: 179 EVKRAVPKELSP-SPSRGQL------GGYSYAMSRVGSFANGFTQGYNPGMVGGHGLRID 231
EVKRAVPKE+SP S R L GG S M S+ N F G PG G +
Sbjct: 181 EVKRAVPKEISPVSNIRSPLASGVNYGGGSNRMP-ANSYFNNFAPG--PGFYNSLG-PVG 236
Query: 232 GRLSPVTVGRSGYPLLSPNYGSELNFELPLSQNESANFTSN-FVIGRALNSSY-NG-SPS 288
R SPV +G SG +S +G LN +L L+ N S + TS+ F R ++ Y NG SP+
Sbjct: 237 RRFSPV-IG-SGRNAVSA-FGLGLNHDLSLNLNPSCDGTSSTFGYNRIPSNPYFNGASPN 293
Query: 289 RYNNAMGYAGSSIGNNATISS-SSINQNLWGNGNLYGATNPATSNAFVGYGSENXXXXXX 347
RY S IG+N T S +S N++LWGN T A G+
Sbjct: 294 RYT-------SPIGHNRTESPYNSNNRDLWGN---------RTDTAGPGWNL-------- 329
Query: 348 XXXXXXXXXXXXNNQAGTIGSGYGKGSLSYRSGDVILGSKTVDYGRS--SESTVASAPLY 405
+ +G +G+ S + +GR+ + S ++S+P
Sbjct: 330 -----------------NVSNGNNRGNWGLPSSSAVSNDNN-GFGRNYGTSSGLSSSPF- 370
Query: 406 TLSNGNYDEAFKDTYEAGPFYRDQTWRSSAS------ELDD-SGSLGLGFENAVSDLMSK 458
NG ++ + + Y G Y D TW+ ELD+ S + G +N SD +
Sbjct: 371 ---NG-FEGSIGELYRGGSVYSDSTWQQQQLPSQSSHELDNLSRAYGYDIDNVGSDPSAN 426
Query: 459 GSGGHIGAYAVASRQSNR 476
+ G+Y V +RQ+NR
Sbjct: 427 DPETYNGSYNVGNRQTNR 444
>AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 328 bits (842), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 231/498 (46%), Positives = 289/498 (58%), Gaps = 76/498 (15%)
Query: 1 MEMDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVA 60
ME D GKLFIGGISWDT+EERLR YF N+GDVVEAVIM+DR TGRARGFGF+VFADP V+
Sbjct: 1 MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60
Query: 61 ERVVMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXX--RTKKIFVGGLPST 118
ERV+M+KH+IDGRTVEAKKAVPRDDQ RTKKIFVGGLPS+
Sbjct: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSS 120
Query: 119 ITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMV 178
ITE +FKNYFDQFGTI DVVVMYDHNTQRPRGFGFITFDS++ V++VL+KTFHELNGK+V
Sbjct: 121 ITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLV 180
Query: 179 EVKRAVPKELSP-SPSRGQL------GGYSYAMSRVGSFANGFTQGYNPGMVGGHGLRID 231
EVKRAVPKE+SP S R L GG S M S+ N F G PG G +
Sbjct: 181 EVKRAVPKEISPVSNIRSPLASGVNYGGGSNRMP-ANSYFNNFAPG--PGFYNSLG-PVG 236
Query: 232 GRLSPVTVGRSGYPLLSPNYGSELNFELPLSQNESANFTSN-FVIGRALNSSY-NG-SPS 288
R SPV +G SG +S +G LN +L L+ N S + TS+ F R ++ Y NG SP+
Sbjct: 237 RRFSPV-IG-SGRNAVSA-FGLGLNHDLSLNLNPSCDGTSSTFGYNRIPSNPYFNGASPN 293
Query: 289 RYNNAMGYAGSSIGNNATISS-SSINQNLWGNGNLYGATNPATSNAFVGYGSENXXXXXX 347
RY S IG+N T S +S N++LWGN T A G+
Sbjct: 294 RYT-------SPIGHNRTESPYNSNNRDLWGN---------RTDTAGPGWNL-------- 329
Query: 348 XXXXXXXXXXXXNNQAGTIGSGYGKGSLSYRSGDVILGSKTVDYGRS--SESTVASAPLY 405
+ +G +G+ S + +GR+ + S ++S+P
Sbjct: 330 -----------------NVSNGNNRGNWGLPSSSAVSNDNN-GFGRNYGTSSGLSSSPF- 370
Query: 406 TLSNGNYDEAFKDTYEAGPFYRDQTWRSSAS------ELDD-SGSLGLGFENAVSDLMSK 458
NG ++ + + Y G Y D TW+ ELD+ S + G +N SD +
Sbjct: 371 ---NG-FEGSIGELYRGGSVYSDSTWQQQQLPSQSSHELDNLSRAYGYDIDNVGSDPSAN 426
Query: 459 GSGGHIGAYAVASRQSNR 476
+ G+Y V +RQ+NR
Sbjct: 427 DPETYNGSYNVGNRQTNR 444
>AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 328 bits (841), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 231/498 (46%), Positives = 289/498 (58%), Gaps = 76/498 (15%)
Query: 1 MEMDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVA 60
ME D GKLFIGGISWDT+EERLR YF N+GDVVEAVIM+DR TGRARGFGF+VFADP V+
Sbjct: 1 MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60
Query: 61 ERVVMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXX--RTKKIFVGGLPST 118
ERV+M+KH+IDGRTVEAKKAVPRDDQ RTKKIFVGGLPS+
Sbjct: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSS 120
Query: 119 ITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMV 178
ITE +FKNYFDQFGTI DVVVMYDHNTQRPRGFGFITFDS++ V++VL+KTFHELNGK+V
Sbjct: 121 ITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLV 180
Query: 179 EVKRAVPKELSP-SPSRGQL------GGYSYAMSRVGSFANGFTQGYNPGMVGGHGLRID 231
EVKRAVPKE+SP S R L GG S M S+ N F G PG G +
Sbjct: 181 EVKRAVPKEISPVSNIRSPLASGVNYGGGSNRMP-ANSYFNNFAPG--PGFYNSLG-PVG 236
Query: 232 GRLSPVTVGRSGYPLLSPNYGSELNFELPLSQNESANFTSN-FVIGRALNSSY-NG-SPS 288
R SPV +G SG +S +G LN +L L+ N S + TS+ F R ++ Y NG SP+
Sbjct: 237 RRFSPV-IG-SGRNAVSA-FGLGLNHDLSLNLNPSCDGTSSTFGYNRIPSNPYFNGASPN 293
Query: 289 RYNNAMGYAGSSIGNNATISS-SSINQNLWGNGNLYGATNPATSNAFVGYGSENXXXXXX 347
RY S IG+N T S +S N++LWGN T A G+
Sbjct: 294 RYT-------SPIGHNRTESPYNSNNRDLWGN---------RTDTAGPGWNL-------- 329
Query: 348 XXXXXXXXXXXXNNQAGTIGSGYGKGSLSYRSGDVILGSKTVDYGRS--SESTVASAPLY 405
+ +G +G+ S + +GR+ + S ++S+P
Sbjct: 330 -----------------NVSNGNNRGNWGLPSSSAVSNDNN-GFGRNYGTSSGLSSSPF- 370
Query: 406 TLSNGNYDEAFKDTYEAGPFYRDQTWRSSAS------ELDD-SGSLGLGFENAVSDLMSK 458
NG ++ + + Y G Y D TW+ ELD+ S + G +N SD +
Sbjct: 371 ---NG-FEGSIGELYRGGSVYSDSTWQQQQLPSQSSHELDNLSRAYGYDIDNVGSDPSAN 426
Query: 459 GSGGHIGAYAVASRQSNR 476
+ G+Y V +RQ+NR
Sbjct: 427 DPETYNGSYNVGNRQTNR 444
>AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 328 bits (841), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 231/498 (46%), Positives = 289/498 (58%), Gaps = 76/498 (15%)
Query: 1 MEMDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVA 60
ME D GKLFIGGISWDT+EERLR YF N+GDVVEAVIM+DR TGRARGFGF+VFADP V+
Sbjct: 1 MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60
Query: 61 ERVVMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXX--RTKKIFVGGLPST 118
ERV+M+KH+IDGRTVEAKKAVPRDDQ RTKKIFVGGLPS+
Sbjct: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSS 120
Query: 119 ITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMV 178
ITE +FKNYFDQFGTI DVVVMYDHNTQRPRGFGFITFDS++ V++VL+KTFHELNGK+V
Sbjct: 121 ITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLV 180
Query: 179 EVKRAVPKELSP-SPSRGQL------GGYSYAMSRVGSFANGFTQGYNPGMVGGHGLRID 231
EVKRAVPKE+SP S R L GG S M S+ N F G PG G +
Sbjct: 181 EVKRAVPKEISPVSNIRSPLASGVNYGGGSNRMP-ANSYFNNFAPG--PGFYNSLG-PVG 236
Query: 232 GRLSPVTVGRSGYPLLSPNYGSELNFELPLSQNESANFTSN-FVIGRALNSSY-NG-SPS 288
R SPV +G SG +S +G LN +L L+ N S + TS+ F R ++ Y NG SP+
Sbjct: 237 RRFSPV-IG-SGRNAVSA-FGLGLNHDLSLNLNPSCDGTSSTFGYNRIPSNPYFNGASPN 293
Query: 289 RYNNAMGYAGSSIGNNATISS-SSINQNLWGNGNLYGATNPATSNAFVGYGSENXXXXXX 347
RY S IG+N T S +S N++LWGN T A G+
Sbjct: 294 RYT-------SPIGHNRTESPYNSNNRDLWGN---------RTDTAGPGWNL-------- 329
Query: 348 XXXXXXXXXXXXNNQAGTIGSGYGKGSLSYRSGDVILGSKTVDYGRS--SESTVASAPLY 405
+ +G +G+ S + +GR+ + S ++S+P
Sbjct: 330 -----------------NVSNGNNRGNWGLPSSSAVSNDNN-GFGRNYGTSSGLSSSPF- 370
Query: 406 TLSNGNYDEAFKDTYEAGPFYRDQTWRSSAS------ELDD-SGSLGLGFENAVSDLMSK 458
NG ++ + + Y G Y D TW+ ELD+ S + G +N SD +
Sbjct: 371 ---NG-FEGSIGELYRGGSVYSDSTWQQQQLPSQSSHELDNLSRAYGYDIDNVGSDPSAN 426
Query: 459 GSGGHIGAYAVASRQSNR 476
+ G+Y V +RQ+NR
Sbjct: 427 DPETYNGSYNVGNRQTNR 444
>AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8231179-8232785 FORWARD LENGTH=411
Length = 411
Score = 233 bits (595), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 102/192 (53%), Positives = 145/192 (75%), Gaps = 2/192 (1%)
Query: 1 MEMDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVA 60
M+ D GKLF+GGISW+T+E++LR++F N+G+V +A++M+D+ TGR RGFGFV+F+DPSV
Sbjct: 1 MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVL 60
Query: 61 ERVVMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXX--XXXXRTKKIFVGGLPST 118
+RV+ EKH ID R V+ K+A+ R++Q +TKKIFVGGLP T
Sbjct: 61 DRVLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPT 120
Query: 119 ITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMV 178
+T+ +F+ YF+ +G +TDV +MYD T RPRGFGF++FDSE+ V+ VL+KTFH+L+GK V
Sbjct: 121 LTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQV 180
Query: 179 EVKRAVPKELSP 190
EVKRA+PK+ +P
Sbjct: 181 EVKRALPKDANP 192
>AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304106 REVERSE LENGTH=371
Length = 371
Score = 219 bits (559), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 123/263 (46%), Positives = 165/263 (62%), Gaps = 6/263 (2%)
Query: 75 VEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFKNYFDQFGTI 134
VEAKKAVPRDD +KKIFVGGL S++TE++FK YF QFG I
Sbjct: 15 VEAKKAVPRDDH--VVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMI 72
Query: 135 TDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKRAVPKELSPSPSR 194
TDVVVMYDH TQRPRGFGFI++DSEE V+KVL KTFHELNGKMVEVK AVPK+++ + R
Sbjct: 73 TDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPKDMALNTMR 132
Query: 195 GQLGGYSYAMSRVGSFANGFTQGYNPGMVGGHGLRIDGRLSPVTVGRSGYPLLSPNYGSE 254
Q+ S+ SR+ S N +TQG++P + G+G++ + R SP R G+ YG E
Sbjct: 133 NQMNVNSFGTSRISSLLNEYTQGFSPSPISGYGVKPEVRYSPAVGNRGGFSPFGHGYGIE 192
Query: 255 LNFELPLSQNESANFTSNFVIGRALNSSYNGSPSRYNNAMGYAGSSIGNNATISSSSINQ 314
LNFE +QN + + F R + Y S R+ + M G+S+GN + ++++ N
Sbjct: 193 LNFEPNQTQNYGSGSSGGFG--RPFSPGYAASLGRFGSQMESGGASVGNGSVLNAAPKNH 250
Query: 315 NLWGNGNL-YGATNPATSNAFVG 336
LWGNG L Y + +P + ++F G
Sbjct: 251 -LWGNGGLGYMSNSPISRSSFSG 272
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+F+GG++ E ++YF FG + + V+M D T R RGFGF+ + ++V+ +
Sbjct: 47 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 106
Query: 67 K-HVIDGRTVEAKKAVPRD 84
H ++G+ VE K AVP+D
Sbjct: 107 TFHELNGKMVEVKLAVPKD 125
>AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:6067394-6069098 REVERSE LENGTH=369
Length = 369
Score = 184 bits (468), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 90/183 (49%), Positives = 119/183 (65%), Gaps = 12/183 (6%)
Query: 5 PGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV 64
PGKLF+GG+SW+T E YF FG+VV++VIM DR TG RGFGFV FAD +VAE+V+
Sbjct: 65 PGKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVL 124
Query: 65 MEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDF 124
E HVID R V+ K+ +PR D++ +T+KIFVGGLP + E +
Sbjct: 125 EEDHVIDDRKVDLKRTLPRGDKD-----------TDIKAVSKTRKIFVGGLPPLLEEDEL 173
Query: 125 KNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK-TFHELNGKMVEVKRA 183
KNYF +G I + +MYDH+T R RGFGF+TF +E+ V+++ HEL K VE+KRA
Sbjct: 174 KNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRA 233
Query: 184 VPK 186
PK
Sbjct: 234 EPK 236
>AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 |
chr1:21727374-21728539 FORWARD LENGTH=360
Length = 360
Score = 179 bits (453), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 92/199 (46%), Positives = 126/199 (63%), Gaps = 12/199 (6%)
Query: 1 MEMDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVA 60
M+ D KLF+GGI+ +T+EE L+QYF +G V+EAV+ K++ TG+ RGFGFV FA+
Sbjct: 1 MDYDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDV 60
Query: 61 ERVVMEKHVIDGRTVEAKKAVPRDD------------QNXXXXXXXXXXXXXXXXXXRTK 108
+ + + H I G+ V+ +KA+ + + + RTK
Sbjct: 61 VKALRDTHFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTK 120
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 168
KIFVGGL S TE +FK+YF++FG TDVVVM+D T RPRGFGF+T+DSE+ VE V+
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQS 180
Query: 169 TFHELNGKMVEVKRAVPKE 187
FHEL+ K VEVKRA+PKE
Sbjct: 181 NFHELSDKRVEVKRAIPKE 199
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 168
K+FVGG+ +E K YF ++G + + VV + T +PRGFGF+ F ++ V K L
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD 66
Query: 169 TFHELNGKMVEVKRAVPK-ELSPSPSRGQL 197
T H + GK V+V++A+ K EL P Q
Sbjct: 67 T-HFILGKPVDVRKAIRKHELYQQPFSMQF 95
>AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256621 FORWARD LENGTH=358
Length = 358
Score = 169 bits (428), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 91/231 (39%), Positives = 136/231 (58%), Gaps = 20/231 (8%)
Query: 5 PGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV 64
PGK+FIGG+ DT ++F +G++ ++VIM+DR TG+ RGFGF+ FADPSV ++V+
Sbjct: 18 PGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVI 77
Query: 65 MEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDF 124
+ HVI+G+ VE K+ +P+ +TKKIFVGG+PST+TE +
Sbjct: 78 EDTHVINGKQVEIKRTIPK------------GAGGNQSKDIKTKKIFVGGIPSTVTEDEL 125
Query: 125 KNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK-TFHELNGKMVEVKRA 183
K++F ++G + + V+ DH T R RGFGF+ FDSEE V+++L K ++ VE+K+A
Sbjct: 126 KDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKA 185
Query: 184 VPKE-LSPSP------SRGQLGGYSYAMSRVGSFANGFTQGYNPGMVGGHG 227
PK+ L+ SP RG+ SYA G+ PG + HG
Sbjct: 186 EPKKSLNRSPPSYGSHPRGRSSNDSYASYGGPYGGFDGGYGHPPGPIRSHG 236
>AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16225483-16227423 FORWARD LENGTH=423
Length = 423
Score = 156 bits (395), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/183 (41%), Positives = 119/183 (65%), Gaps = 15/183 (8%)
Query: 6 GKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVM 65
GK+F+GG++ +T ++F +G++ ++VIMKDR TG+ RGFGFV +AD SV ++V+
Sbjct: 42 GKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ 101
Query: 66 EKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFK 125
+ H+I G+ VE K+ +PR +TKKIFVGG+PS++ + +FK
Sbjct: 102 DNHIIIGKQVEIKRTIPR--------------GSMSSNDFKTKKIFVGGIPSSVDDDEFK 147
Query: 126 NYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK-TFHELNGKMVEVKRAV 184
+F QFG + + +M DH+T R RGFGF+T++SE+ V+ +L K EL+G VE+K+A
Sbjct: 148 EFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAE 207
Query: 185 PKE 187
PK+
Sbjct: 208 PKK 210
>AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256014 FORWARD LENGTH=231
Length = 231
Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 108/164 (65%), Gaps = 12/164 (7%)
Query: 5 PGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV 64
PGK+FIGG+ DT ++F +G++ ++VIM+DR TG+ RGFGF+ FADPSV ++V+
Sbjct: 18 PGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVI 77
Query: 65 MEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDF 124
+ HVI+G+ VE K+ +P+ +TKKIFVGG+PST+TE +
Sbjct: 78 EDTHVINGKQVEIKRTIPK------------GAGGNQSKDIKTKKIFVGGIPSTVTEDEL 125
Query: 125 KNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 168
K++F ++G + + V+ DH T R RGFGF+ FDSEE V+++L K
Sbjct: 126 KDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 168
KIF+GGL T + F +F ++G ITD V+M D +T +PRGFGFITF V+KV+
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 169 TFHELNGKMVEVKRAVPK 186
T H +NGK VE+KR +PK
Sbjct: 80 T-HVINGKQVEIKRTIPK 96
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 45/70 (64%)
Query: 2 EMDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAE 61
++ K+F+GGI E+ L+ +F +G+VVE +++D T R+RGFGFV+F V +
Sbjct: 105 DIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVD 164
Query: 62 RVVMEKHVID 71
++ + ++ID
Sbjct: 165 ELLSKGNMID 174
>AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 110/181 (60%), Gaps = 15/181 (8%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
KL + GI WD + + L+ Y FGD+ + ++MKDR+TGR+RGFG+V FA A+ +
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKG 63
Query: 67 KHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFKN 126
+H + R +E K A P+++ + +IFV +PS+++ESDF++
Sbjct: 64 EHFLGNRILEVKVATPKEEMR--------------QPAKKVTRIFVARIPSSVSESDFRS 109
Query: 127 YFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKRAVPK 186
+F+++G ITD+ + D+N+++ RG GFITF S + VE ++ T H+L G V V RA PK
Sbjct: 110 HFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDT-HDLGGTTVAVDRATPK 168
Query: 187 E 187
E
Sbjct: 169 E 169
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 108 KKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLY 167
+K+ V G+P I K+Y +FG + D +VM D +T R RGFG++TF S E + L
Sbjct: 3 RKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL- 61
Query: 168 KTFHELNGKMVEVKRAVPKELSPSPSR 194
K H L +++EVK A PKE P++
Sbjct: 62 KGEHFLGNRILEVKVATPKEEMRQPAK 88
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 63/139 (45%), Gaps = 12/139 (8%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 168
KIFVG LP + D ++YF +FG I D + D RGFGF+TF +E GV + +
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTF-AENGVADRVAR 299
Query: 169 TFHELNGKMVEVKRAVP-KELSPSP--------SRGQ-LGGYSYAMSRVGSFANGFT-QG 217
HE+ G+ V + A P E PS SR + GGY M G G +
Sbjct: 300 RSHEICGQEVAIDSATPLDEAGPSAGASSMLSSSRPEYFGGYGGPMRAFGRMYGGMSLDD 359
Query: 218 YNPGMVGGHGLRIDGRLSP 236
+ GM R D R P
Sbjct: 360 WGYGMPNARPSRPDRRYRP 378
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 44/79 (55%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+F+G + + + + LR YF FG + +A I KD RGFGFV FA+ VA+RV
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVARR 300
Query: 67 KHVIDGRTVEAKKAVPRDD 85
H I G+ V A P D+
Sbjct: 301 SHEICGQEVAIDSATPLDE 319
>AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 110/181 (60%), Gaps = 15/181 (8%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
KL + GI WD + + L+ Y FGD+ + ++MKDR+TGR+RGFG+V FA A+ +
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKG 63
Query: 67 KHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFKN 126
+H + R +E K A P+++ + +IFV +PS+++ESDF++
Sbjct: 64 EHFLGNRILEVKVATPKEEMR--------------QPAKKVTRIFVARIPSSVSESDFRS 109
Query: 127 YFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKRAVPK 186
+F+++G ITD+ + D+N+++ RG GFITF S + VE ++ T H+L G V V RA PK
Sbjct: 110 HFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDT-HDLGGTTVAVDRATPK 168
Query: 187 E 187
E
Sbjct: 169 E 169
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 108 KKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLY 167
+K+ V G+P I K+Y +FG + D +VM D +T R RGFG++TF S E + L
Sbjct: 3 RKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL- 61
Query: 168 KTFHELNGKMVEVKRAVPKELSPSPSR 194
K H L +++EVK A PKE P++
Sbjct: 62 KGEHFLGNRILEVKVATPKEEMRQPAK 88
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 63/139 (45%), Gaps = 12/139 (8%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 168
KIFVG LP + D ++YF +FG I D + D RGFGF+TF +E GV + +
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTF-AENGVADRVAR 299
Query: 169 TFHELNGKMVEVKRAVP-KELSPSP--------SRGQ-LGGYSYAMSRVGSFANGFT-QG 217
HE+ G+ V + A P E PS SR + GGY M G G +
Sbjct: 300 RSHEICGQEVAIDSATPLDEAGPSAGASSMLSSSRPEYFGGYGGPMRAFGRMYGGMSLDD 359
Query: 218 YNPGMVGGHGLRIDGRLSP 236
+ GM R D R P
Sbjct: 360 WGYGMPNARPSRPDRRYRP 378
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 44/79 (55%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+F+G + + + + LR YF FG + +A I KD RGFGFV FA+ VA+RV
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVARR 300
Query: 67 KHVIDGRTVEAKKAVPRDD 85
H I G+ V A P D+
Sbjct: 301 SHEICGQEVAIDSATPLDE 319
>AT1G33470.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:12144632-12146040 FORWARD LENGTH=244
Length = 244
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+F+GG++W+T++ LR YF+ FGD+VEAV++ D+++GR++G+GFV F DP A++ ++
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 67 K-HVIDGRTVEAKKA 80
VIDGR A
Sbjct: 68 PAPVIDGRRANCNLA 82
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 168
K+FVGGL + +NYF+QFG I + VV+ D ++ R +G+GF+TF E +K
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 169 TFHELNGKMVEVKRA---VPKELSPSPSRGQLGG 199
++G+ A V + SP G +GG
Sbjct: 68 PAPVIDGRRANCNLAAFGVQRSKPSSPIHGHVGG 101
>AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:12144632-12146040 FORWARD LENGTH=245
Length = 245
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+F+GG++W+T++ LR YF+ FGD+VEAV++ D+++GR++G+GFV F DP A++ ++
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 67 K-HVIDGRTVEAKKA 80
VIDGR A
Sbjct: 68 PAPVIDGRRANCNLA 82
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 168
K+FVGGL + +NYF+QFG I + VV+ D ++ R +G+GF+TF E +K
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 169 TFHELNGKMVEVKRA---VPKELSPSPSRGQLGG 199
++G+ A V + SP G +GG
Sbjct: 68 PAPVIDGRRANCNLAAFGVQRSKPSSPIHGHVGG 101
>AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:28686932-28688506 REVERSE LENGTH=285
Length = 285
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+F+GG++W+T E LRQ+F+ +G+++EAV++ D+ TGR++G+GFV F DP A R +
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD 84
Query: 67 K-HVIDGRTVEAKKA 80
+IDGR A
Sbjct: 85 PTPIIDGRRANCNLA 99
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 168
K+FVGGL + +F+Q+G I + VV+ D NT R +G+GF+TF E +
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD 84
Query: 169 TFHELNGKMVEVKRA 183
++G+ A
Sbjct: 85 PTPIIDGRRANCNLA 99
>AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+F+GG++W+T E LR++F +GD++EAV++ D+ TGR++G+GFV F DP A R ++
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
Query: 67 K-HVIDGRTVEAKKA 80
+IDGR A
Sbjct: 85 PTPIIDGRRANCNLA 99
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 168
K+FVGGL + +FDQ+G I + VV+ D NT R +G+GF+TF E +
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
Query: 169 TFHELNGKMVEVKRA 183
++G+ A
Sbjct: 85 PTPIIDGRRANCNLA 99
>AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+F+GG++W+T E LR++F +GD++EAV++ D+ TGR++G+GFV F DP A R ++
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
Query: 67 K-HVIDGRTVEAKKA 80
+IDGR A
Sbjct: 85 PTPIIDGRRANCNLA 99
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 168
K+FVGGL + +FDQ+G I + VV+ D NT R +G+GF+TF E +
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
Query: 169 TFHELNGKMVEVKRA 183
++G+ A
Sbjct: 85 PTPIIDGRRANCNLA 99
>AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 82/179 (45%), Gaps = 12/179 (6%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
KLFI G++ DT E LR F ++GD+ EA+++ D+ TG+++G+GFV F A + E
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKE 135
Query: 67 K-HVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFK 125
IDGR + A +KI+V +P +
Sbjct: 136 PSKKIDGRVTVTQLAA-----------SGNQGTGSQIADISMRKIYVANVPFDMPADRLL 184
Query: 126 NYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKRAV 184
N+F +G + + + +D T + RGF + + EG + L ++GK + K AV
Sbjct: 185 NHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLAV 243
>AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 82/179 (45%), Gaps = 12/179 (6%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
KLFI G++ DT E LR F ++GD+ EA+++ D+ TG+++G+GFV F A + E
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKE 135
Query: 67 K-HVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFK 125
IDGR + A +KI+V +P +
Sbjct: 136 PSKKIDGRVTVTQLAA-----------SGNQGTGSQIADISMRKIYVANVPFDMPADRLL 184
Query: 126 NYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKRAV 184
N+F +G + + + +D T + RGF + + EG + L ++GK + K AV
Sbjct: 185 NHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLAV 243
>AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7886693-7889241 FORWARD LENGTH=291
Length = 291
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+F+GG++W+T + +R+YF FG+++EAVI+ D+ TG+++G+GFV F D A R V +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVAD 77
Query: 67 KH-VIDGRTVEAKKA 80
+ VIDGR A
Sbjct: 78 PNPVIDGRKANCNIA 92
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 168
K+FVGGL + + YFDQFG I + V++ D T + +G+GF+TF + + +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVAD 77
Query: 169 TFHELNGKMVEVKRAV---PKELSP-------SPSRGQLGGYS 201
++G+ A P+ +P SPS+ Q GG S
Sbjct: 78 PNPVIDGRKANCNIASFGRPRPSTPRGRGQGGSPSQYQGGGQS 120
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 91/195 (46%), Gaps = 17/195 (8%)
Query: 4 DPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV 63
+ KLF+G +++D N + L F+ G V A ++ +R T ++RGFGFV + AE
Sbjct: 148 EEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETA 207
Query: 64 VME--KHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITE 121
V + ++ ++GR + KA PR + +++VG LP +
Sbjct: 208 VEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAF----------RVYVGNLPWDVDN 257
Query: 122 SDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITF-DSEEGVEKVLYKTFHELNGKMVEV 180
+ F + G + + V+YD T R RGFGF+T D +E E + L G+ + V
Sbjct: 258 GRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRV 317
Query: 181 KRAVPKELSPSPSRG 195
A E P P RG
Sbjct: 318 NVA---EERP-PRRG 328
>AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:19229516-19231043 FORWARD LENGTH=336
Length = 336
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+F+GG++W+T + +R+YF+ FG++VEAV++ D+ TGR++G+GFV F + A R
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQN 82
Query: 67 KH-VIDGRTVEAKKAV 81
+ VIDGR A
Sbjct: 83 MNPVIDGRRANCNLAC 98
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%)
Query: 106 RTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKV 165
+ KIFVGGL + YF+QFG I + VV+ D NT R +G+GF+TF E +
Sbjct: 20 KLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRA 79
Query: 166 LYKTFHELNGKMVEVKRAVPKELSPSP 192
++G+ A P P
Sbjct: 80 CQNMNPVIDGRRANCNLACLGAQKPRP 106
>AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29450181 FORWARD LENGTH=287
Length = 287
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+F+GG++W+T + +R+YF+ FG+++EAVI+ D+ TG+++G+GFV F + A R V +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 67 KH-VIDGRTVEAKKA 80
+ VIDGR A
Sbjct: 78 PNPVIDGRKANCNIA 92
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 166
K+FVGGL + + YF+QFG I + V++ D NT + +G+GF+TF + + +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAV 75
>AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29449246 FORWARD LENGTH=271
Length = 271
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+F+GG++W+T + +R+YF+ FG+++EAVI+ D+ TG+++G+GFV F + A R V +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 67 KH-VIDGRTVEAKKA 80
+ VIDGR A
Sbjct: 78 PNPVIDGRKANCNIA 92
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 166
K+FVGGL + + YF+QFG I + V++ D NT + +G+GF+TF + + +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAV 75
>AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding |
chr4:9207164-9214187 REVERSE LENGTH=672
Length = 672
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 89/198 (44%), Gaps = 28/198 (14%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
KLF+G + EE +R YF+ G+V+E ++KD+ TG+ +G FV +A A+R +
Sbjct: 46 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 105
Query: 67 KH---VIDGRT--VEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITE 121
H + G T V+ + A D + K+FVG L TE
Sbjct: 106 LHNQITLPGGTGPVQVRYA---DGERERIGTLEF-------------KLFVGSLNKQATE 149
Query: 122 SDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL-----YKTFHELNGK 176
+ + F QFG + DV +M D Q RG GF+ + S+E + T N
Sbjct: 150 KEVEEIFLQFGHVEDVYLMRDEYRQS-RGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQP 208
Query: 177 MVEVKRAVPKELSPSPSR 194
++ V+ A PK P SR
Sbjct: 209 LI-VRFAEPKRPKPGESR 225
>AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9207164-9214412 REVERSE LENGTH=747
Length = 747
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 89/198 (44%), Gaps = 28/198 (14%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
KLF+G + EE +R YF+ G+V+E ++KD+ TG+ +G FV +A A+R +
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 67 KH---VIDGRT--VEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITE 121
H + G T V+ + A D + K+FVG L TE
Sbjct: 181 LHNQITLPGGTGPVQVRYA---DGERERIGTLEF-------------KLFVGSLNKQATE 224
Query: 122 SDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL-----YKTFHELNGK 176
+ + F QFG + DV +M D Q RG GF+ + S+E + T N
Sbjct: 225 KEVEEIFLQFGHVEDVYLMRDEYRQS-RGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQP 283
Query: 177 MVEVKRAVPKELSPSPSR 194
++ V+ A PK P SR
Sbjct: 284 LI-VRFAEPKRPKPGESR 300
>AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9208564-9214412 REVERSE LENGTH=533
Length = 533
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 89/198 (44%), Gaps = 28/198 (14%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
KLF+G + EE +R YF+ G+V+E ++KD+ TG+ +G FV +A A+R +
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 67 KH---VIDGRT--VEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITE 121
H + G T V+ + A D + K+FVG L TE
Sbjct: 181 LHNQITLPGGTGPVQVRYA---DGERERIGTLEF-------------KLFVGSLNKQATE 224
Query: 122 SDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL-----YKTFHELNGK 176
+ + F QFG + DV +M D Q RG GF+ + S+E + T N
Sbjct: 225 KEVEEIFLQFGHVEDVYLMRDEYRQS-RGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQP 283
Query: 177 MVEVKRAVPKELSPSPSR 194
++ V+ A PK P SR
Sbjct: 284 LI-VRFAEPKRPKPGESR 300
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 83/180 (46%), Gaps = 11/180 (6%)
Query: 4 DPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV 63
+ G+L++G + + L Q F G VV+ I+ D+ T R+RGFGFV A+
Sbjct: 114 EEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEA 173
Query: 64 V--MEKHVIDGRTVEAK-KAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTIT 120
+ I GRTV+ VPR +N K++ G L +T
Sbjct: 174 MQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDS--PHKVYAGNLGWNLT 231
Query: 121 ESDFKNYF-DQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVE 179
K+ F DQ G + V+Y+ NT R RGFGFI+F+S E V+ L +NG VE
Sbjct: 232 SQGLKDAFGDQPGVL-GAKVIYERNTGRSRGFGFISFESAENVQSALAT----MNGVEVE 286
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDS-EEGVEKVLY 167
+++VG LP TIT S+ F + GT+ DV ++YD T R RGFGF+T S EE E +
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 168 KTFHELNGKMVEV 180
++ G+ V+V
Sbjct: 177 FNSSQIGGRTVKV 189
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 94/190 (49%), Gaps = 14/190 (7%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
KLF+G + ++ + +L Q F++ G+V ++ D+ TGR+RGFGFV + S E +
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 67 --KHVIDGRTVEAKKAVP---RDD------QNXXXXXXXXXXXXXXXXXXRTKKIFVGGL 115
+ +DGR + P R+D ++ +++VG L
Sbjct: 152 FNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNL 211
Query: 116 PSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFH--EL 173
+ + ++ F + G + + V+YD ++ R +GFGF+T+DS + V+ + K+ +L
Sbjct: 212 SWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAI-KSLDGADL 270
Query: 174 NGKMVEVKRA 183
+G+ + V A
Sbjct: 271 DGRQIRVSEA 280
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 64
++++G +SW ++ L F G VVEA ++ DR +GR++GFGFV + + +
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 65 MEKHVIDGRTVEAKKAVPR 83
++ +DGR + +A R
Sbjct: 265 LDGADLDGRQIRVSEAEAR 283
>AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107659 FORWARD LENGTH=249
Length = 249
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+F+GG++W+T++E ++++F+ FG+++EAV++ D+ +GR++G+GFV F + A ++
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 67 K-HVIDGRTVEAKKA 80
VIDGR A
Sbjct: 74 ATPVIDGRRANCNLA 88
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 168
K+FVGGL + K +F+QFG I + VV+ D + R +G+GF+TF E
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 169 TFHELNGKMVEVKRA 183
++G+ A
Sbjct: 74 ATPVIDGRRANCNLA 88
>AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107618 FORWARD LENGTH=242
Length = 242
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+F+GG++W+T++E ++++F+ FG+++EAV++ D+ +GR++G+GFV F + A ++
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 67 K-HVIDGRTVEAKKA 80
VIDGR A
Sbjct: 74 ATPVIDGRRANCNLA 88
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 168
K+FVGGL + K +F+QFG I + VV+ D + R +G+GF+TF E
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 169 TFHELNGKMVEVKRA 183
++G+ A
Sbjct: 74 ATPVIDGRRANCNLA 88
>AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 |
chr2:15361476-15364398 REVERSE LENGTH=609
Length = 609
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 100/231 (43%), Gaps = 22/231 (9%)
Query: 8 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 67
L++ + D +E+ LR+ F FG +V I KD RG+ FV F +P A R
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENR-LCRGYAFVNFDNPEDARRAA--- 258
Query: 68 HVIDG-----RTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITES 122
++G + + +A + ++ + I+V + +TE
Sbjct: 259 ETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEE 318
Query: 123 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDS-EEGVEKVLYKTFH--ELNGKMVE 179
+ + +F Q GTIT +M D + +GFGF+ F + EE ++ V KTFH +GK +
Sbjct: 319 ELRKHFSQCGTITSTKLMCDEKG-KSKGFGFVCFSTPEEAIDAV--KTFHGQMFHGKPLY 375
Query: 180 VKRAVPKELSPSPSRGQLGGY-------SYAMSRVGSFANGFTQGYNPGMV 223
V A KE + Q G S A G++A + +PGMV
Sbjct: 376 VAIAQKKEDRKMQLQVQFGNRVEARKSSSSASVNPGTYAPLYYTNTHPGMV 426
>AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107949 FORWARD LENGTH=347
Length = 347
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+F+GG++W+T++E ++++F+ FG+++EAV++ D+ +GR++G+GFV F + A ++
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 67 K-HVIDGRTVEAKKA 80
VIDGR A
Sbjct: 74 ATPVIDGRRANCNLA 88
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 168
K+FVGGL + K +F+QFG I + VV+ D + R +G+GF+TF E
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 169 TFHELNGKMVEVKRA 183
++G+ A
Sbjct: 74 ATPVIDGRRANCNLA 88
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 64
KLF+GG+SW T++ L+Q F +FG+V EA ++ DR TGR+RGFGFV F+ A +
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 65 MEKHVIDGRTVEAKKAVPR 83
M+ ++GR + A R
Sbjct: 96 MDGKELNGRQIRVNLATER 114
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 107 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 166
+ K+FVGGL +S K F FG +T+ V+ D T R RGFGF++F E+ +
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 167 YKTF-HELNGKMVEVKRAVPKELSPSPS 193
+ ELNG+ + V A + +P S
Sbjct: 94 KEMDGKELNGRQIRVNLATERSSAPRSS 121
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 64
KLF+GG+SW T++ L+Q F +FG+V EA ++ DR TGR+RGFGFV F+ A +
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 65 MEKHVIDGRTVEAKKAVPR 83
M+ ++GR + A R
Sbjct: 96 MDGKELNGRQIRVNLATER 114
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 107 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 166
+ K+FVGGL +S K F FG +T+ V+ D T R RGFGF++F E+ +
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 167 YKTF-HELNGKMVEVKRAVPKELSPSPS 193
+ ELNG+ + V A + +P S
Sbjct: 94 KEMDGKELNGRQIRVNLATERSSAPRSS 121
>AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 75/154 (48%), Gaps = 28/154 (18%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
++FIGG+ D EE LR + G++ E +MKDR +G ++G+ FV F VA++ + E
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 176
Query: 67 KHVID--GRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDF 124
H + G+T+ + ++ ++F+G +P TE +F
Sbjct: 177 LHSKEFKGKTIRCSLSETKN------------------------RLFIGNIPKNWTEDEF 212
Query: 125 KNYFDQFGT-ITDVVVMYDH-NTQRPRGFGFITF 156
+ + G + ++ ++ D NT R RGF F+ +
Sbjct: 213 RKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLY 246
>AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 75/154 (48%), Gaps = 28/154 (18%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
++FIGG+ D EE LR + G++ E +MKDR +G ++G+ FV F VA++ + E
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 176
Query: 67 KHVID--GRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDF 124
H + G+T+ + ++ ++F+G +P TE +F
Sbjct: 177 LHSKEFKGKTIRCSLSETKN------------------------RLFIGNIPKNWTEDEF 212
Query: 125 KNYFDQFGT-ITDVVVMYDH-NTQRPRGFGFITF 156
+ + G + ++ ++ D NT R RGF F+ +
Sbjct: 213 RKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLY 246
>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=129
Length = 129
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 64
KLFIGG+SW T++ LR F +FGDVV+A ++ DR TGR+RGFGFV F D A +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 65 MEKHVIDGRTVEAKKAVPR 83
M+ ++GR + A R
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 107 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 166
+ K+F+GGL ++ ++ F FG + D V+ D T R RGFGF+ F+ E +
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 167 YKTF-HELNGKMVEVKRA 183
+ ELNG+ + V A
Sbjct: 94 SEMDGKELNGRHIRVNPA 111
>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=144
Length = 144
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 64
KLFIGG+SW T++ LR F +FGDVV+A ++ DR TGR+RGFGFV F D A +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 65 MEKHVIDGRTVEAKKAVPR 83
M+ ++GR + A R
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 107 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 166
+ K+F+GGL ++ ++ F FG + D V+ D T R RGFGF+ F+ E +
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 167 YKTF-HELNGKMVEVKRAVPKELSP 190
+ ELNG+ + V A + +P
Sbjct: 94 SEMDGKELNGRHIRVNPANDRPSAP 118
>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=153
Length = 153
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 64
KLFIGG+SW T++ LR F +FGDVV+A ++ DR TGR+RGFGFV F D A +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 65 MEKHVIDGRTVEAKKAVPR 83
M+ ++GR + A R
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 107 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 166
+ K+F+GGL ++ ++ F FG + D V+ D T R RGFGF+ F+ E +
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 167 YKTF-HELNGKMVEVKRAVPKELSP 190
+ ELNG+ + V A + +P
Sbjct: 94 SEMDGKELNGRHIRVNPANDRPSAP 118
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
LENGTH=158
Length = 158
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 64
KLFIGG+SW T++ LR F +FGDVV+A ++ DR TGR+RGFGFV F D A +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 65 MEKHVIDGRTVEAKKAVPR 83
M+ ++GR + A R
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 107 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 166
+ K+F+GGL ++ ++ F FG + D V+ D T R RGFGF+ F+ E +
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 167 YKTF-HELNGKMVEVKRAVPKELSP 190
+ ELNG+ + V A + +P
Sbjct: 94 SEMDGKELNGRHIRVNPANDRPSAP 118
>AT3G54770.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:20273863-20275827 REVERSE LENGTH=261
Length = 261
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+F+GG++WDT++E + +F +GD++EAVI+ D+ T R++G+GFV F D A R +
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACED 77
Query: 67 K-HVIDGRTVEAKKA 80
+I+GR A
Sbjct: 78 STPIINGRRANCNLA 92
>AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 84/193 (43%), Gaps = 6/193 (3%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+F+ G+ WDT E L + F+ +G++ + + D+ +G+++G+GF+++ S A + +
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQ 200
Query: 67 KHVIDGRTVEAKKAV---PRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESD 123
G + A + P KKI+V + + +
Sbjct: 201 PQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQK 260
Query: 124 FKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKRA 183
+F +FG I + + D T RP+GF + S E ++ L + G ++ ++A
Sbjct: 261 LLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
Query: 184 VPKELSPSPSRGQ 196
+ P P + Q
Sbjct: 321 ID---GPKPGKQQ 330
>AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 84/193 (43%), Gaps = 6/193 (3%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+F+ G+ WDT E L + F+ +G++ + + D+ +G+++G+GF+++ S A + +
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQ 200
Query: 67 KHVIDGRTVEAKKAV---PRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESD 123
G + A + P KKI+V + + +
Sbjct: 201 PQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQK 260
Query: 124 FKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKRA 183
+F +FG I + + D T RP+GF + S E ++ L + G ++ ++A
Sbjct: 261 LLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
Query: 184 VPKELSPSPSRGQ 196
+ P P + Q
Sbjct: 321 ID---GPKPGKQQ 330
>AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 84/193 (43%), Gaps = 6/193 (3%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+F+ G+ WDT E L + F+ +G++ + + D+ +G+++G+GF+++ S A + +
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQ 200
Query: 67 KHVIDGRTVEAKKAV---PRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESD 123
G + A + P KKI+V + + +
Sbjct: 201 PQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQK 260
Query: 124 FKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKRA 183
+F +FG I + + D T RP+GF + S E ++ L + G ++ ++A
Sbjct: 261 LLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
Query: 184 VPKELSPSPSRGQ 196
+ P P + Q
Sbjct: 321 ID---GPKPGKQQ 330
>AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 84/193 (43%), Gaps = 6/193 (3%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+F+ G+ WDT E L + F+ +G++ + + D+ +G+++G+GF+++ S A + +
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQ 200
Query: 67 KHVIDGRTVEAKKAV---PRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESD 123
G + A + P KKI+V + + +
Sbjct: 201 PQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQK 260
Query: 124 FKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKRA 183
+F +FG I + + D T RP+GF + S E ++ L + G ++ ++A
Sbjct: 261 LLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
Query: 184 VPKELSPSPSRGQ 196
+ P P + Q
Sbjct: 321 ID---GPKPGKQQ 330
>AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 84/193 (43%), Gaps = 6/193 (3%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+F+ G+ WDT E L + F+ +G++ + + D+ +G+++G+GF+++ S A + +
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQ 200
Query: 67 KHVIDGRTVEAKKAV---PRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESD 123
G + A + P KKI+V + + +
Sbjct: 201 PQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQK 260
Query: 124 FKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKRA 183
+F +FG I + + D T RP+GF + S E ++ L + G ++ ++A
Sbjct: 261 LLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
Query: 184 VPKELSPSPSRGQ 196
+ P P + Q
Sbjct: 321 ID---GPKPGKQQ 330
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 64
+ F+GG++W TN+E L++ F FGDV+++ I+ DR +GR+RGFGFV F D +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 65 MEKHVIDGRTVEAKKAVPR 83
M +DGR + +A R
Sbjct: 67 MNGKELDGRVITVNEAQSR 85
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 168
+ FVGGL + D + F QFG + D ++ D + R RGFGF+TF EK +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRD 62
Query: 169 TFHELNGKMVEVKRAVPKELSPSPSRGQLGG 199
E+NGK ++ R + ++ + SRG GG
Sbjct: 63 AIEEMNGKELD-GRVIT--VNEAQSRGSGGG 90
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 12/161 (7%)
Query: 4 DPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV 63
+ KLF+G + +D + + L F+ G V + ++ +R T ++RGFGFV + AE+
Sbjct: 111 EEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKA 170
Query: 64 VME--KHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITE 121
V + ++GR + +A PR + +I+VG LP +
Sbjct: 171 VEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAF----------RIYVGNLPWDVDS 220
Query: 122 SDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGV 162
+ F + G + D V+ D T R RGFGF+ +E V
Sbjct: 221 GRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEV 261
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 168
K+FVG LP + F+Q GT+ V+Y+ +T + RGFGF+T + E EK + K
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 169 -TFHELNGKMVEVKRAVPKELSPSPSRGQLGGYSYAMS-RVGSFANGFTQGYNPGMVGGH 226
E+NG+ + V RA P+ P R Q Y A VG+ G + H
Sbjct: 174 FNSFEVNGRRLTVNRAAPR--GSRPER-QPRVYDAAFRIYVGNLPWDVDSGRLERLFSEH 230
Query: 227 GLRIDGRL 234
G +D R+
Sbjct: 231 GKVVDARV 238
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
++++G + WD + RL + F G VV+A ++ DR TGR+RGFGFV ++ + V +
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNEN---EVNVA 264
Query: 67 KHVIDGRTVEAK 78
+DG+ +E +
Sbjct: 265 IAALDGQNLEGR 276
>AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 24/152 (15%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
++FIGG+ D EE LR + G++ E +MKDR +G ++G+ FV F VA++ + E
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 176
Query: 67 KHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFKN 126
H + + + ++F+G +P TE +F+
Sbjct: 177 LHSKEFKA----------------------SSTANCSLSLSNRLFIGNIPKNWTEDEFRK 214
Query: 127 YFDQFGT-ITDVVVMYDH-NTQRPRGFGFITF 156
+ G + ++ ++ D NT R RGF F+ +
Sbjct: 215 VIEDVGPGVENIELIKDPTNTTRNRGFAFVLY 246
>AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:3640349-3640876 REVERSE LENGTH=175
Length = 175
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+++GG+ W+T E LR YF+ FGD++ ++ DR TGR+ G+GFV F D A R
Sbjct: 53 KIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAESATRACQN 112
Query: 67 -KHVIDGRTVEAKKA 80
K VIDGR + A
Sbjct: 113 PKPVIDGREAKCNLA 127
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%)
Query: 106 RTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEK 164
R KI+VGGLP ++YF+QFG I V ++ D T R G+GF+TF E +
Sbjct: 50 RYTKIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAESATR 108
>AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352842-354965 FORWARD LENGTH=467
Length = 467
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 32/152 (21%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
++FIGG+ D EE LR + G++ E +MKDR +G ++G+ FV F VA++ + E
Sbjct: 97 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 156
Query: 67 KHVID--GRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDF 124
H + G+T+ + ++ ++F+G +P TE +F
Sbjct: 157 LHSKEFKGKTIRCSLSETKN------------------------RLFIGNIPKNWTEDEF 192
Query: 125 KNYFDQFGTITDVVVMYDHNTQRPRGFGFITF 156
+ I DV NT R RGF F+ +
Sbjct: 193 RK------VIEDVGPGDPTNTTRNRGFAFVLY 218
>AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 168
+IFVGGL +TE ++ FD++G IT+ +M +T RPRGFGFITF G + + K
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI-K 71
Query: 169 TFH--ELNGKMVEVKRAVPK 186
H EL K++ V +A PK
Sbjct: 72 HMHGRELGNKVISVNKAEPK 91
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
++F+GG+SWD E +L F +G + E IM R TGR RGFGF+ F D A+ +
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 67 KH--VIDGRTVEAKKAVPR 83
H + + + KA P+
Sbjct: 73 MHGRELGNKVISVNKAEPK 91
>AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 168
+IFVGGL +TE ++ FD++G IT+ +M +T RPRGFGFITF G + + K
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI-K 71
Query: 169 TFH--ELNGKMVEVKRAVPK 186
H EL K++ V +A PK
Sbjct: 72 HMHGRELGNKVISVNKAEPK 91
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
++F+GG+SWD E +L F +G + E IM R TGR RGFGF+ F D A+ +
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 67 KH--VIDGRTVEAKKAVPR 83
H + + + KA P+
Sbjct: 73 MHGRELGNKVISVNKAEPK 91
>AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs)
family protein with retrovirus zinc finger-like domain
| chr3:9671953-9673055 FORWARD LENGTH=245
Length = 245
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 1 MEMDPG-KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSV 59
M DP + FIGG++W T++ LR F+ +G +VEA ++ D+ +GR+RGFGF+ F +
Sbjct: 1 MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60
Query: 60 AERVV--MEKHVIDGRTVEAKKAVP 82
+ + M +DGRT+ KA P
Sbjct: 61 MDEAIAAMNGMDLDGRTITVDKAQP 85
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGV-EKVLY 167
+ F+GGL T ++ ++ F+++G + + V+ D + R RGFGFITFD ++ + E +
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 168 KTFHELNGKMVEVKRAVPKE 187
+L+G+ + V +A P +
Sbjct: 68 MNGMDLDGRTITVDKAQPHQ 87
>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
chr2:9943209-9946041 FORWARD LENGTH=662
Length = 662
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 83/176 (47%), Gaps = 14/176 (7%)
Query: 8 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 67
+++ +S T ++ L+ F +G + AV+M+D G++R FGFV F +P A R V
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRD-GDGKSRCFGFVNFENPEDAARAV--- 282
Query: 68 HVIDGRTVEAK-----KAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITES 122
++G+ + K KA + ++ ++V L T+T+
Sbjct: 283 EALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDE 342
Query: 123 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMV 178
+ F +FGTIT VM D + +G GF+ F + +VL +E+NGKMV
Sbjct: 343 KLRELFAEFGTITSCKVMRDPSGTS-KGSGFVAFSAASEASRVL----NEMNGKMV 393
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 16/176 (9%)
Query: 6 GKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVM 65
G LF+ + + + L + F G +V + D G++RG+GFV F D + + +
Sbjct: 134 GNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHM-GQSRGYGFVQF-DTEDSAKNAI 191
Query: 66 EKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFK 125
EK ++G+ + D Q + ++V L T+ + K
Sbjct: 192 EK--LNGKVLN-------DKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELK 242
Query: 126 NYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVK 181
F Q+G+I+ VVM D + + R FGF+ F++ E + + LNGK + K
Sbjct: 243 TTFGQYGSISSAVVMRDGDG-KSRCFGFVNFENPEDAARAV----EALNGKKFDDK 293
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=169
Length = 169
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
+ F+GG++W TN+E L++ F FGDV+++ I+ DR +GR+RGFGFV F D + E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 67 KH--VIDGRTVEAKKA 80
+ +DGR + +A
Sbjct: 67 MNGKELDGRVITVNEA 82
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 168
+ FVGGL + D + F QFG + D ++ D + R RGFGF+TF EK +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRD 62
Query: 169 TFHELNGKMVE 179
E+NGK ++
Sbjct: 63 AIEEMNGKELD 73
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=126
Length = 126
Score = 69.3 bits (168), Expect = 5e-12, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 64
+ F+GG++W TN+E L++ F FGDV+++ I+ DR +GR+RGFGFV F D +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 65 MEKHVIDGRTVEAKKA 80
M +DGR + +A
Sbjct: 67 MNGKELDGRVITVNEA 82
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 168
+ FVGGL + D + F QFG + D ++ D + R RGFGF+TF E+ + + +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 169 -TFHELNGKMVEVKRA 183
EL+G+++ V A
Sbjct: 67 MNGKELDGRVITVNEA 82
>AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 78/178 (43%), Gaps = 5/178 (2%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+F+ G+ WDT + L F+ +G++ + + D+ +G+++G+GF++F S A + +
Sbjct: 129 KIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQ 188
Query: 67 -KHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFK 125
+ I R + A Q +KI+V + + I
Sbjct: 189 PQKKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENV----QRKIYVSNVSADIDPQKLL 244
Query: 126 NYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKRA 183
+F +FG I + + D T RP+GF + S E +K L + G ++ +A
Sbjct: 245 EFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTFEGHVLHCHKA 302
>AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 78/178 (43%), Gaps = 5/178 (2%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+F+ G+ WDT + L F+ +G++ + + D+ +G+++G+GF++F S A + +
Sbjct: 129 KIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQ 188
Query: 67 -KHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFK 125
+ I R + A Q +KI+V + + I
Sbjct: 189 PQKKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENV----QRKIYVSNVSADIDPQKLL 244
Query: 126 NYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKRA 183
+F +FG I + + D T RP+GF + S E +K L + G ++ +A
Sbjct: 245 EFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTFEGHVLHCHKA 302
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Length = 629
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 83/176 (47%), Gaps = 8/176 (4%)
Query: 8 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV--M 65
+++ ++ T ++ L+ F +G + AV+MKD G+++GFGFV F + A R V +
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFENADDAARAVESL 275
Query: 66 EKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFK 125
H D + +A + ++ ++ ++V L +I++ K
Sbjct: 276 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLK 335
Query: 126 NYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVK 181
F FGT+T VM D N +G GF+ F + E + + +L+GKM+E K
Sbjct: 336 EIFSPFGTVTSSKVMRDPNGTS-KGSGFVAFATPEEATEAM----SQLSGKMIESK 386
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 88/184 (47%), Gaps = 17/184 (9%)
Query: 6 GKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV- 64
G +FI + + + L F +FG++V + D ++G+++G+GFV +A+ A++ +
Sbjct: 124 GNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIE 182
Query: 65 -MEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESD 123
+ +++ + V + R +++ + ++V L + T+ D
Sbjct: 183 KLNGMLLNDKQVYVGPFLRRQERDSTANKT------------KFTNVYVKNLAESTTDDD 230
Query: 124 FKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFD-SEEGVEKVLYKTFHELNGKMVEVKR 182
KN F ++G IT VVM D + +GFGF+ F+ +++ V H+ + K V R
Sbjct: 231 LKNAFGEYGKITSAVVMKDGEG-KSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGR 289
Query: 183 AVPK 186
A K
Sbjct: 290 AQKK 293
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 3 MDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER 62
M KLFIGG+++ +E+ LR+ F +G+VV+ ++ DR TGR+RGFGFV F A
Sbjct: 37 MSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASS 96
Query: 63 VVMEKHVIDGRTVEAK 78
+ +DGR + +
Sbjct: 97 AI---QALDGRDLHGR 109
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 107 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 166
+ K+F+GG+ ++ E + F ++G + D V+ D T R RGFGF+TF S E +
Sbjct: 39 SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98
Query: 167 YKT-FHELNGKMVEVKRA 183
+L+G++V+V A
Sbjct: 99 QALDGRDLHGRVVKVNYA 116
>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 83/179 (46%), Gaps = 14/179 (7%)
Query: 8 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 67
+++ +S ++E L + F FG VIM+D G+++GFGFV F + A R V
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNFENSDDAARAV--- 281
Query: 68 HVIDGRTVEAK-----KAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITES 122
++G+T + K KA + ++ + ++V L ++T+
Sbjct: 282 DALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDD 341
Query: 123 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVK 181
+ +F FGTIT VM D + RG GF+ F + E + + E+NGKM+ K
Sbjct: 342 KLREHFAPFGTITSCKVMRDPSGVS-RGSGFVAFSTPEEATRAIT----EMNGKMIVTK 395
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 77/177 (43%), Gaps = 23/177 (12%)
Query: 8 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 67
L++G + + +L + F G VV + +D TT R+ G+G+V +A P A R + E
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 68 H--VIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFK 125
+ ++GR + +V RD IF+ L +I
Sbjct: 107 NFMALNGRAIRVMYSV-RD---------------PSLRKSGVGNIFIKNLDKSIDHKALH 150
Query: 126 NYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKR 182
F FG I V D + Q +G+GF+ +D++E + + K LNG ++ K+
Sbjct: 151 ETFSAFGPILSCKVAVDPSGQS-KGYGFVQYDTDEAAQGAIDK----LNGMLLNDKQ 202
>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 83/179 (46%), Gaps = 14/179 (7%)
Query: 8 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 67
+++ +S ++E L + F FG VIM+D G+++GFGFV F + A R V
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNFENSDDAARAV--- 281
Query: 68 HVIDGRTVEAK-----KAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITES 122
++G+T + K KA + ++ + ++V L ++T+
Sbjct: 282 DALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDD 341
Query: 123 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVK 181
+ +F FGTIT VM D + RG GF+ F + E + + E+NGKM+ K
Sbjct: 342 KLREHFAPFGTITSCKVMRDPSGVS-RGSGFVAFSTPEEATRAIT----EMNGKMIVTK 395
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 77/177 (43%), Gaps = 23/177 (12%)
Query: 8 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 67
L++G + + +L + F G VV + +D TT R+ G+G+V +A P A R + E
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 68 H--VIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFK 125
+ ++GR + +V RD IF+ L +I
Sbjct: 107 NFMALNGRAIRVMYSV-RD---------------PSLRKSGVGNIFIKNLDKSIDHKALH 150
Query: 126 NYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKR 182
F FG I V D + Q +G+GF+ +D++E + + K LNG ++ K+
Sbjct: 151 ETFSAFGPILSCKVAVDPSGQS-KGYGFVQYDTDEAAQGAIDK----LNGMLLNDKQ 202
>AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:1878497-1879515 FORWARD LENGTH=146
Length = 146
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
KLFIGG+S+ T E+ L + F G VVEA I+ DR + R++GFGFV FA A++ +ME
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 67 --KHVIDGRTV 75
++GRT+
Sbjct: 95 FNGQQLNGRTI 105
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 168
K+F+GGL TE F + G + + ++ D + R +GFGF+TF S + +K L +
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 169 -TFHELNGKMVEVKRAVPKELSPSPSRGQLGGYSYA 203
+LNG+ + V A K+ S G GGY A
Sbjct: 95 FNGQQLNGRTIFVDYAKAKQ-----SLGGGGGYPIA 125
>AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, and
rna binding 2 | chr2:9265477-9266316 REVERSE LENGTH=159
Length = 159
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 64
+ F+GG++W T++ L F +GDV+++ I+ DR TGR+RGFGFV F D + +
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 65 MEKHVIDGRTVEAKKA 80
M +DGR++ +A
Sbjct: 69 MNGQDLDGRSITVNEA 84
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLY- 167
+ FVGGL + + F Q+G + D ++ D T R RGFGF+TF E+ ++ +
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 168 KTFHELNGKMVEVKRA 183
+L+G+ + V A
Sbjct: 69 MNGQDLDGRSITVNEA 84
>AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold,
circadian rhythm, and rna binding 2 |
chr2:9265477-9266316 REVERSE LENGTH=176
Length = 176
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 64
+ F+GG++W T++ L F +GDV+++ I+ DR TGR+RGFGFV F D + +
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 65 MEKHVIDGRTVEAKKA 80
M +DGR++ +A
Sbjct: 69 MNGQDLDGRSITVNEA 84
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLY- 167
+ FVGGL + + F Q+G + D ++ D T R RGFGF+TF E+ ++ +
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 168 KTFHELNGKMVEVKRA 183
+L+G+ + V A
Sbjct: 69 MNGQDLDGRSITVNEA 84
>AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=105
Length = 105
Score = 65.9 bits (159), Expect = 6e-11, Method: Composition-based stats.
Identities = 27/60 (45%), Positives = 41/60 (68%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
+ F+GG++W TN+E L++ F FGDV+++ I+ DR +GR+RGFGFV F D + E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 166
+ FVGGL + D + F QFG + D ++ D + R RGFGF+TF E+ + +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAI 64
>AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr5:1192461-1195413 FORWARD LENGTH=310
Length = 310
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 168
+IFVGGL +T+ D + F +FG I D +M + +T R RGFGFITF +++ + +
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 169 TF-HELNGKMVEVKRAVPK 186
+ +++ V RA PK
Sbjct: 68 MHGRDFGDRVISVNRAEPK 86
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
++F+GG+S + + L + F FGD+++ IM +R TGR+RGFGF+ FAD + + E
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 67 KHVID--GRTVEAKKAVP---RDD 85
H D R + +A P RDD
Sbjct: 68 MHGRDFGDRVISVNRAEPKLGRDD 91
>AT5G53720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21806622-21807012 FORWARD LENGTH=100
Length = 100
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+++ G+ W T E L YF+ FG++V A ++ D T R++GFGFV F + A R
Sbjct: 10 KIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACEN 69
Query: 67 -KHVIDGRTVEAKKA 80
H IDGRTV K A
Sbjct: 70 PNHTIDGRTVNCKLA 84
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 40/78 (51%)
Query: 106 RTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKV 165
R KI+V GLP +YF++FG I V+ D TQR +GFGF+TF E +
Sbjct: 7 RETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRA 66
Query: 166 LYKTFHELNGKMVEVKRA 183
H ++G+ V K A
Sbjct: 67 CENPNHTIDGRTVNCKLA 84
>AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protein 6
| chr1:6415226-6416283 FORWARD LENGTH=155
Length = 155
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 50/77 (64%), Gaps = 2/77 (2%)
Query: 1 MEMDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVA 60
+ + P K+F+GG+S T+ E L++ F +FG +V+AV++ DR +G +RGFGFV + VA
Sbjct: 31 LSLTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVA 90
Query: 61 ERVV--MEKHVIDGRTV 75
+ M+ +DGR +
Sbjct: 91 NNAMQAMQNKELDGRII 107
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 109 KIFVGGL-PSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLY 167
KIFVGGL PST E K F FG I D VV+ D + RGFGF+T+DS E +
Sbjct: 37 KIFVGGLSPSTDVEL-LKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQ 95
Query: 168 KTFH-ELNGKMVEVKRA 183
+ EL+G+++ V A
Sbjct: 96 AMQNKELDGRIIGVHPA 112
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 4/77 (5%)
Query: 3 MDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER 62
M K+F+GGIS+ T+E LR+ F +G+VV+A I+ DR TGR+RGF FV F A
Sbjct: 31 MSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASN 90
Query: 63 VVMEKHVIDGRTVEAKK 79
+ +DG+ + ++
Sbjct: 91 AMQ----LDGQDLHGRR 103
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%)
Query: 107 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 166
+ KIFVGG+ + E + F ++G + D ++ D T R RGF F+TF S E +
Sbjct: 33 SSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM 92
Query: 167 YKTFHELNGKMVEVKRAV 184
+L+G+ + V A
Sbjct: 93 QLDGQDLHGRRIRVNYAT 110
>AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=293
Length = 293
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 80/185 (43%), Gaps = 7/185 (3%)
Query: 5 PGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV 64
P +L++ I + +L FQ FG V+ + ++ TG +RG G+V + A+ +
Sbjct: 107 PCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAI 166
Query: 65 --MEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITES 122
++ + GR + + +V + K++VG LP
Sbjct: 167 ASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPD 226
Query: 123 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKR 182
+N+F +FGTI V++D T R R F F++F S E + L NG E +R
Sbjct: 227 GLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL-----SFNGTQYEGRR 281
Query: 183 AVPKE 187
+ +E
Sbjct: 282 IIVRE 286
>AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 83/189 (43%), Gaps = 11/189 (5%)
Query: 3 MDPG-----KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADP 57
+DP +++IG I E+L + + G V + +M D+ +GR+R FGF
Sbjct: 68 LDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSV 127
Query: 58 SVAERVVMEKHVIDGRTVEAK--KAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGL 115
A VV EK ++G TVE + K + K++VG L
Sbjct: 128 EDANAVV-EK--LNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNL 184
Query: 116 PSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHE-LN 174
T+T+ +N F + G + V T + GFGF+TF SEE VE + + L
Sbjct: 185 AKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLE 244
Query: 175 GKMVEVKRA 183
G+ + V +A
Sbjct: 245 GQKIRVNKA 253
>AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 83/189 (43%), Gaps = 11/189 (5%)
Query: 3 MDPG-----KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADP 57
+DP +++IG I E+L + + G V + +M D+ +GR+R FGF
Sbjct: 68 LDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSV 127
Query: 58 SVAERVVMEKHVIDGRTVEAK--KAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGL 115
A VV EK ++G TVE + K + K++VG L
Sbjct: 128 EDANAVV-EK--LNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNL 184
Query: 116 PSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHE-LN 174
T+T+ +N F + G + V T + GFGF+TF SEE VE + + L
Sbjct: 185 AKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLE 244
Query: 175 GKMVEVKRA 183
G+ + V +A
Sbjct: 245 GQKIRVNKA 253
>AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr4:13554983-13557763 REVERSE
LENGTH=415
Length = 415
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 70/164 (42%), Gaps = 13/164 (7%)
Query: 8 LFIGGISWDTNEERLRQYFQN-FGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
+F+G ++ D + L + F+ + V A ++ DRTTGR++G+GFV FAD S R + E
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTE 234
Query: 67 K--HVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDF 124
R + A + IFVG + ++TE D
Sbjct: 235 MNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDL 294
Query: 125 KNYFDQFGTITDVVVMYDHNTQRPRG--FGFITFDSEEGVEKVL 166
K+ F QFG + V + P G GF+ + + E+ L
Sbjct: 295 KSVFGQFGELVHVKI--------PAGKRCGFVQYANRACAEQAL 330
>AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17427182 FORWARD LENGTH=432
Length = 432
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 15/176 (8%)
Query: 8 LFIGGISWDTNEERLRQYF-QNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
+F+G +S D ++ L + F + + V A ++ D TGR++G+GFV F D + + + E
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 258
Query: 67 KHVID--GRTVEAKKAVPRDDQNXXXX--XXXXXXXXXXXXXXRTKKIFVGGLPSTITES 122
+ + R + A PR IFVGGL S++T+
Sbjct: 259 MNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDE 318
Query: 123 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMV 178
D K F++FG I V + +G GF+ F + E+ L K LNG ++
Sbjct: 319 DLKQPFNEFGEIVSVKIPVG------KGCGFVQFVNRPNAEEALEK----LNGTVI 364
>AT3G06970.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2199653-2201150 REVERSE LENGTH=317
Length = 317
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+F+G ++W T + LR+YF+ FG VV+A ++ + GR++G+GF+ F D R +
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQN 72
Query: 67 -KHVIDGRTVEAKKA 80
K +IDGRT A
Sbjct: 73 SKPIIDGRTTNCNLA 87
>AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 |
chr3:5558676-5560993 REVERSE LENGTH=537
Length = 537
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 8/188 (4%)
Query: 4 DPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV 63
D +++ + ++ L F +G V V+M+D GR+RGFGFV F +P A++
Sbjct: 200 DSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRD-GMGRSRGFGFVNFCNPENAKKA 258
Query: 64 VMEKHV---IDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTIT 120
ME + + + KA+ +D++ R ++V L ++
Sbjct: 259 -MESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNM-RWSNLYVKNLSESMN 316
Query: 121 ESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITF-DSEEGVEKVLYKTFHELNGKMVE 179
E+ + F +G I VM H R +GFGF+ F + EE + Y ++GK +
Sbjct: 317 ETRLREIFGCYGQIVSAKVMC-HENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIV 375
Query: 180 VKRAVPKE 187
V+ A KE
Sbjct: 376 VRVAERKE 383
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 85/183 (46%), Gaps = 18/183 (9%)
Query: 8 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVF--ADPSVAERVVM 65
L++ + L + F FG ++ ++++ G+++GFGFV F +V+ R +
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVVEE--NGQSKGFGFVQFDTEQSAVSARSAL 171
Query: 66 EKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFK 125
++ G+ + K + +D++ + ++V L T+T+
Sbjct: 172 HGSMVYGKKLFVAKFINKDER------------AAMAGNQDSTNVYVKNLIETVTDDCLH 219
Query: 126 NYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTF-HELNGKMVEVKRAV 184
F Q+GT++ VVVM D R RGFGF+ F + E +K + +L K + V +A+
Sbjct: 220 TLFSQYGTVSSVVVMRD-GMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKAL 278
Query: 185 PKE 187
K+
Sbjct: 279 KKD 281
>AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein
47C' | chr1:17432682-17434805 FORWARD LENGTH=434
Length = 434
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 15/176 (8%)
Query: 8 LFIGGISWDTNEERLRQYF-QNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
+F+G ++ D ++ L + F + + V A ++ D TGR++G+GFV F D + + + E
Sbjct: 201 IFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 260
Query: 67 KHVID--GRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRT--KKIFVGGLPSTITES 122
+ + R + A PR T IFVGGL S++T+
Sbjct: 261 MNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDE 320
Query: 123 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMV 178
D K F +FG I V + +G GF+ F + E+ L K LNG ++
Sbjct: 321 DLKQPFSEFGEIVSVKIPVG------KGCGFVQFVNRPNAEEALEK----LNGTVI 366
>AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 |
chr1:12433356-12434735 REVERSE LENGTH=407
Length = 407
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 82/176 (46%), Gaps = 13/176 (7%)
Query: 8 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVF--ADPSVAERVVM 65
+++ + + L++ F FG++ AV+MKD G++R FGFV F A+ +V M
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKD-GEGKSRRFGFVNFEKAEAAVTAIEKM 179
Query: 66 EKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKK---IFVGGLPSTITES 122
V+D + + +A + N +T+K ++V L ++ +
Sbjct: 180 NGVVVDEKELHVGRA--QRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNT 237
Query: 123 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMV 178
+ F +FGTIT VM H+ +G GF+ F + E K + K +NGKMV
Sbjct: 238 KLEELFSEFGTITSCKVMV-HSNGISKGVGFVEFSTSEEASKAMLK----MNGKMV 288
>AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21798382-21799109 FORWARD LENGTH=169
Length = 169
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+++GG+ W T +E L +F+ FG+++ ++ DR T R++G+GFV F D A R +
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKD 73
Query: 67 KH-VIDGRTVEAKKA 80
+ I+GR K A
Sbjct: 74 PNPTIEGRITNCKLA 88
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 168
KI+VGGLP T + N+F +FG I V V+ D T R +G+GF+TF E +
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKD 73
Query: 169 TFHELNGKMVEVKRA 183
+ G++ K A
Sbjct: 74 PNPTIEGRITNCKLA 88
>AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2555034-2555829 REVERSE LENGTH=143
Length = 143
Score = 62.4 bits (150), Expect = 7e-10, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
KLFIGG+SW +E+ L+ F +FG+V E I D+ +GR+RGFGFV FA+ A +
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDA---LSA 98
Query: 67 KHVIDGR 73
K +DG+
Sbjct: 99 KDAMDGK 105
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEG 161
K+F+GGL ++ E K+ F FG + +V + YD + R RGFGF+ F +EEG
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDF-AEEG 93
>AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8022601-8023162 FORWARD LENGTH=87
Length = 87
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 64
++++G +S T ++ LR+ F +G+VV+A++M+DR T R+RGFGFV ++ S AE V
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 65 MEKHVIDGRTVEAK 78
M+ ++GR V K
Sbjct: 64 MDGKELNGRRVSVK 77
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLY- 167
+++VG L T T+ + F +G + D +VM D T R RGFGF+T+ S E +
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 168 KTFHELNGKMVEVK 181
ELNG+ V VK
Sbjct: 64 MDGKELNGRRVSVK 77
>AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=294
Length = 294
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 81/186 (43%), Gaps = 8/186 (4%)
Query: 5 PGKLFIGGISWDTNEERLRQYFQNFGDVVEA-VIMKDRTTGRARGFGFVVFADPSVAERV 63
P +L++ I + +L FQ FG V+ V+ ++ TG +RG G+V + A+
Sbjct: 107 PCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSAKIA 166
Query: 64 V--MEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITE 121
+ ++ + GR + + +V + K++VG LP
Sbjct: 167 IASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQP 226
Query: 122 SDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVK 181
+N+F +FGTI V++D T R R F F++F S E + L NG E +
Sbjct: 227 DGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL-----SFNGTQYEGR 281
Query: 182 RAVPKE 187
R + +E
Sbjct: 282 RIIVRE 287
>AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:16912511-16913250 REVERSE LENGTH=102
Length = 102
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 168
++FV L + T+ + F FG I + ++ D TQRP+GFGFITFDSE+ K L
Sbjct: 8 QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL-- 65
Query: 169 TFHELNGKMVE 179
L+GK+V+
Sbjct: 66 --KSLDGKIVD 74
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 6 GKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV- 64
+LF+ +S T ++ LRQ F FG + EA +++D T R +GFGF+ F A + +
Sbjct: 7 AQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALK 66
Query: 65 -MEKHVIDGRTV 75
++ ++DGR +
Sbjct: 67 SLDGKIVDGRLI 78
>AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:2829341-2834189 FORWARD LENGTH=690
Length = 690
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 3 MDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER 62
+D G+LF+ G+ + T EE L ++F FGD+ E ++ D+ T RG FV++ P A+
Sbjct: 224 LDAGRLFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKM 283
Query: 63 VV--MEKHVIDGRTVEAKKAVPR 83
+ ++K GRT+ A PR
Sbjct: 284 AMDKLDKLPFQGRTLHILPAKPR 306
>AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 |
chr1:8055599-8058799 FORWARD LENGTH=660
Length = 660
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 73/171 (42%), Gaps = 26/171 (15%)
Query: 6 GKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAE---- 61
G +FI + + + L + F +FG ++ + D TGR++G+GFV F A+
Sbjct: 136 GNIFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAID 194
Query: 62 ----RVVMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPS 117
++ +K V G + ++ RD+ R ++V LP
Sbjct: 195 KLNGMLMNDKQVFVGHFIRRQERA-RDENTPTP---------------RFTNVYVKNLPK 238
Query: 118 TITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 168
I E + + F +FG I+ VVM D + R FGF+ F+ E + K
Sbjct: 239 EIGEDELRKTFGKFGVISSAVVMRDQSGNS-RCFGFVNFECTEAAASAVEK 288
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 77/173 (44%), Gaps = 8/173 (4%)
Query: 8 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 67
+++ + + E+ LR+ F FG + AV+M+D++ G +R FGFV F A V +
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQS-GNSRCFGFVNFECTEAAASAVEKM 289
Query: 68 HVID--GRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFK 125
+ I + +A + ++ + +++ L ++ + K
Sbjct: 290 NGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLK 349
Query: 126 NYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMV 178
F ++G +T VM + RGFGF+ + + E + L E+NGKM+
Sbjct: 350 EMFSEYGNVTSSKVMLNPQGMS-RGFGFVAYSNPEEALRAL----SEMNGKMI 397
>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 18/166 (10%)
Query: 6 GKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV- 64
G +FI + + + L + F +FG ++ + D GR++G+GFV F A+ +
Sbjct: 146 GNVFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAID 204
Query: 65 -MEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESD 123
+ +++ + V V R D+ ++V LP IT+ +
Sbjct: 205 KLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFT----------NVYVKNLPKEITDDE 254
Query: 124 FKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEE----GVEKV 165
K F ++G I+ VVM D + R FGF+ F S E VEK+
Sbjct: 255 LKKTFGKYGDISSAVVMKDQSGNS-RSFGFVNFVSPEAAAVAVEKM 299
>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 18/166 (10%)
Query: 6 GKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV- 64
G +FI + + + L + F +FG ++ + D GR++G+GFV F A+ +
Sbjct: 146 GNVFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAID 204
Query: 65 -MEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESD 123
+ +++ + V V R D+ ++V LP IT+ +
Sbjct: 205 KLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFT----------NVYVKNLPKEITDDE 254
Query: 124 FKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEE----GVEKV 165
K F ++G I+ VVM D + R FGF+ F S E VEK+
Sbjct: 255 LKKTFGKYGDISSAVVMKDQSGNS-RSFGFVNFVSPEAAAVAVEKM 299
>AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:9388571-9390450 REVERSE LENGTH=343
Length = 343
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+F+ G+ W+T E L F+ +G++ E ++ D+ TG+A+GFGFV+F A+ + E
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKE 164
Query: 67 -KHVIDGRTVEAKKA 80
K I RT + A
Sbjct: 165 PKKRILNRTATCQLA 179
>AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9392397-9393545 REVERSE LENGTH=382
Length = 382
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 34/47 (72%)
Query: 8 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVF 54
+F+ G+ WDT E L+ F+ +G++ E ++ D+ TGRA+GFGFV+F
Sbjct: 165 IFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLF 211
>AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:9389407-9390450 REVERSE LENGTH=347
Length = 347
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+F+ G+ W+T E L F+ +G++ E ++ D+ TG+A+GFGFV+F A+ + E
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKE 164
Query: 67 -KHVIDGRTVEAKKA 80
K I RT + A
Sbjct: 165 PKKRILNRTATCQLA 179
>AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=426
Length = 426
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 83/182 (45%), Gaps = 35/182 (19%)
Query: 8 LFIGGISWDTNEERLRQYFQNFGDVVEA-VIMKDRTTGRARGFGFVVFADPSVAERVVME 66
++ G I E L++ F + G + +I KD+++ +GFV + D A +M
Sbjct: 65 VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS-----YGFVHYFDRRCASMAIMT 119
Query: 67 ---KHVIDGRTVEAKKAVP---RDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTIT 120
+H+ G+ ++ A R+D + IFVG L +T
Sbjct: 120 LNGRHIF-GQPMKVNWAYATGQREDTSSHF------------------NIFVGDLSPEVT 160
Query: 121 ESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEV 180
++ + F F + +D VM+D T R RGFGF++F +++ + + +E+NGK V
Sbjct: 161 DAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAI----NEMNGKWVSS 216
Query: 181 KR 182
++
Sbjct: 217 RQ 218
>AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4673027-4675950 FORWARD LENGTH=427
Length = 427
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 84/182 (46%), Gaps = 35/182 (19%)
Query: 8 LFIGGISWDTNEERLRQYFQNFGDVVEA-VIMKDRTTGRARGFGFVVFADPSVAERVVME 66
+++G I E L++ F + G V + +I KD+++ +GFV + D A ++
Sbjct: 61 VYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS-----YGFVHYFDRRSAALAILS 115
Query: 67 ---KHVIDGRTVEAKKAVP---RDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTIT 120
+H+ G+ ++ A R+D + IFVG L +T
Sbjct: 116 LNGRHLF-GQPIKVNWAYATGQREDTSSHF------------------NIFVGDLSPEVT 156
Query: 121 ESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEV 180
++ F F + +D VM+D T R RGFGF++F +++ + + +E+NGK +
Sbjct: 157 DATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAI----NEMNGKWLSS 212
Query: 181 KR 182
++
Sbjct: 213 RQ 214
>AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:8031554-8033517 REVERSE LENGTH=363
Length = 363
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 21/184 (11%)
Query: 8 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 67
+++GG+ +EE L + F G VV + KDR T + +GF+ + A+ +
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 68 HVID--GRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFK 125
++I G+ + KA +D ++ +F+G L + E
Sbjct: 87 NMIKLHGKPIRVNKAS-QDKKSLDVGA----------------NLFIGNLDPDVDEKLLY 129
Query: 126 NYFDQFGTI-TDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK-TFHELNGKMVEVKRA 183
+ F FG I ++ +M D +T RGFGFI++DS E + + T L+ + + V A
Sbjct: 130 DTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYA 189
Query: 184 VPKE 187
K+
Sbjct: 190 YKKD 193
>AT5G04810.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:1390049-1393760 FORWARD LENGTH=952
Length = 952
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMY-DHNTQRPRGFGFITFDSEEGVEKVLY 167
KIFVG LP+ I + +F+ +F QFG I +V+++ H ++ GFGFI + +E+ K +
Sbjct: 166 KIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIYAAEKSAMKAVE 225
Query: 168 KTFHELNGKMVEVK 181
E +G+++ VK
Sbjct: 226 FDGVEFHGRILTVK 239
>AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15743112-15744504 REVERSE LENGTH=142
Length = 142
Score = 55.5 bits (132), Expect = 8e-08, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 40/60 (66%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
+LF+ G+S T E+L+ F +FG +V+A ++ DR +GR++GFGFV +A AE+ E
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAE 94
>AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like 1 |
chr1:18098186-18101422 FORWARD LENGTH=557
Length = 557
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 77/175 (44%), Gaps = 15/175 (8%)
Query: 8 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 67
LF +S++ + +F+ G+VV+ +R G RGFG V FA A++ +E
Sbjct: 299 LFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQK-ALEF 357
Query: 68 H--VIDGRTVEAKKAVPRDDQNXXXX-XXXXXXXXXXXXXXRTKKIFVGGLPSTITESDF 124
H + GR + A R ++ KKIFV G ++++E D
Sbjct: 358 HGRPLLGREIRLDIAQERGERGERPAFTPQSGNFRSGGDGGDEKKIFVKGFDASLSEDDI 417
Query: 125 KN----YFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNG 175
KN +F G I +V V D +T +G ++ F EG EK L ELNG
Sbjct: 418 KNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFS--EGKEKAL-----ELNG 465
>AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:8383856-8386604 FORWARD LENGTH=613
Length = 613
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 34/47 (72%)
Query: 8 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVF 54
+F+ G WDT +E L+ F+++G++ E ++ D+ TGR +G+GFV+F
Sbjct: 410 IFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMF 456
>AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47A |
chr1:18357236-18360150 REVERSE LENGTH=445
Length = 445
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 74/183 (40%), Gaps = 22/183 (12%)
Query: 8 LFIGGISWDTNEERLRQYFQ-NFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
+F+G ++ D ++ L + F + V A ++ D TGR++G+GFV F D + R + E
Sbjct: 215 IFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTE 274
Query: 67 KH--VIDGRTVEAKKAVPRD---------DQNXXXXXXXXXXXXXXXXXXRTKKIFVGGL 115
+ R + A P+ Q IFVGGL
Sbjct: 275 MNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGL 334
Query: 116 PSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNG 175
+ +TE D F FG + V + +G GF+ F + + E+ + LNG
Sbjct: 335 DADVTEEDLMQPFSDFGEVVSVKIPVG------KGCGFVQFANRQSAEEAI----GNLNG 384
Query: 176 KMV 178
++
Sbjct: 385 TVI 387
>AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22171332-22172656 FORWARD LENGTH=156
Length = 156
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 8 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV--M 65
LF+ G+S T E LR F FG+V +A ++ DR +G ++GFGFV +A + + + M
Sbjct: 58 LFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGM 117
Query: 66 EKHVIDGRTVEAKKAVPRDD 85
+ +DG + A+ A PR+
Sbjct: 118 DGKFLDGWVIFAEYARPREQ 137
>AT3G13570.1 | Symbols: SCL30A, At-SCL30A | SC35-like splicing
factor 30A | chr3:4429564-4431602 REVERSE LENGTH=262
Length = 262
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 5 PGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV 64
P L + + D +E LR+ F+ FG V + + +D TG RGFGF+ F DP+ A
Sbjct: 36 PTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADA---A 92
Query: 65 MEKHVIDG 72
KH +DG
Sbjct: 93 EAKHQMDG 100
>AT1G55310.1 | Symbols: SR33, ATSCL33, SCL33, At-SCL33 | SC35-like
splicing factor 33 | chr1:20630676-20632695 FORWARD
LENGTH=287
Length = 287
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 5 PGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV 64
P L + + D +E LR+ F+ FG V + + +D TG RGFGFV F DP+ A
Sbjct: 35 PTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADA---A 91
Query: 65 MEKHVIDG 72
KH +DG
Sbjct: 92 DAKHHMDG 99
>AT2G27330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:11695350-11696563 REVERSE LENGTH=116
Length = 116
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 7/86 (8%)
Query: 8 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME- 66
LF+ GIS+ + EE L Q F +G V++ ++ D+ R +GF +V F+ AE+ ++E
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82
Query: 67 -KHVIDGR-----TVEAKKAVPRDDQ 86
++DGR T +A K P D +
Sbjct: 83 NAQLVDGRVVILDTTKAAKHNPPDTK 108
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 107 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 166
+ +FV G+ + TE F Q+G + V V+ D RP+GF ++TF S+E EK L
Sbjct: 20 SSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79
Query: 167 YKTFHELNGKMVE 179
ELN ++V+
Sbjct: 80 L----ELNAQLVD 88
>AT2G16940.1 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=561
Length = 561
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 7/184 (3%)
Query: 2 EMDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADP-SVA 60
E D +F I+ E + ++F G V + I+ DR + R+RG G+V F D SV
Sbjct: 178 ERDQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVP 237
Query: 61 ERVVMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTIT 120
+ + + G+ V K + + ++++VG L ++
Sbjct: 238 MAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHINMS 297
Query: 121 ESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEV 180
E D + F+ FG++ V V D T +GFGF+ F E L LNG++
Sbjct: 298 EDDLRKVFESFGSVELVQVPRDE-TGLCKGFGFVQFARLEDARNAL-----NLNGQLEIA 351
Query: 181 KRAV 184
RA+
Sbjct: 352 GRAI 355
>AT2G16940.2 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=610
Length = 610
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 7/184 (3%)
Query: 2 EMDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADP-SVA 60
E D +F I+ E + ++F G V + I+ DR + R+RG G+V F D SV
Sbjct: 227 ERDQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVP 286
Query: 61 ERVVMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTIT 120
+ + + G+ V K + + ++++VG L ++
Sbjct: 287 MAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHINMS 346
Query: 121 ESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEV 180
E D + F+ FG++ V V D T +GFGF+ F E L LNG++
Sbjct: 347 EDDLRKVFESFGSVELVQVPRDE-TGLCKGFGFVQFARLEDARNAL-----NLNGQLEIA 400
Query: 181 KRAV 184
RA+
Sbjct: 401 GRAI 404
>AT1G55310.2 | Symbols: SR33, ATSCL33, SCL33, At-SCL33 | SC35-like
splicing factor 33 | chr1:20630676-20632567 FORWARD
LENGTH=220
Length = 220
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 5 PGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV 64
P L + + D +E LR+ F+ FG V + + +D TG RGFGFV F DP+ A
Sbjct: 35 PTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADA---A 91
Query: 65 MEKHVIDG 72
KH +DG
Sbjct: 92 DAKHHMDG 99
>AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 64
+L++G +SW ++ L F G VVEA ++ DR +GR++GFGFV + ++ +
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 65 MEKHVIDGRTVEAKKAVPR 83
+ +DGR + +A R
Sbjct: 318 LNGADLDGRQIRVSEAEAR 336
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 168
+++VG L + + +N F++ G + + V+YD ++ R +GFGF+T S + V+K +
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAI-- 315
Query: 169 TFHELNGKMVEVKRAVPKELSPSPSRGQL 197
+ LNG ++ ++ E P RGQ
Sbjct: 316 --NSLNGADLDGRQIRVSEAEARPPRGQF 342
>AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 64
+L++G +SW ++ L F G VVEA ++ DR +GR++GFGFV + ++ +
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 65 MEKHVIDGRTVEAKKAVPR 83
+ +DGR + +A R
Sbjct: 318 LNGADLDGRQIRVSEAEAR 336
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 168
+++VG L + + +N F++ G + + V+YD ++ R +GFGF+T S + V+K +
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAI-- 315
Query: 169 TFHELNGKMVEVKRAVPKELSPSPSRGQL 197
+ LNG ++ ++ E P RGQ
Sbjct: 316 --NSLNGADLDGRQIRVSEAEARPPRGQF 342
>AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 64
+L++G +SW ++ L F G VVEA ++ DR +GR++GFGFV + ++ +
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 65 MEKHVIDGRTVEAKKAVPR 83
+ +DGR + +A R
Sbjct: 318 LNGADLDGRQIRVSEAEAR 336
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 168
+++VG L + + +N F++ G + + V+YD ++ R +GFGF+T S + V+K +
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAI-- 315
Query: 169 TFHELNGKMVEVKRAVPKELSPSPSRGQL 197
+ LNG ++ ++ E P RGQ
Sbjct: 316 --NSLNGADLDGRQIRVSEAEARPPRGQF 342
>AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=363
Length = 363
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 64
+L++G +SW ++ L F G VVEA ++ DR +GR++GFGFV + ++ +
Sbjct: 279 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 338
Query: 65 MEKHVIDGRTVEAKKAVPR 83
+ +DGR + +A R
Sbjct: 339 LNGADLDGRQIRVSEAEAR 357
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 168
+++VG L + + +N F++ G + + V+YD ++ R +GFGF+T S + V+K +
Sbjct: 279 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAI-- 336
Query: 169 TFHELNGKMVEVKRAVPKELSPSPSRGQL 197
+ LNG ++ ++ E P RGQ
Sbjct: 337 --NSLNGADLDGRQIRVSEAEARPPRGQF 363
>AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid
binding;RNA binding | chr4:10677482-10681623 FORWARD
LENGTH=816
Length = 816
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 3 MDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER 62
+D G+LF+ + + EE L ++F FG + E ++ D+ T R+RG ++++ P A R
Sbjct: 291 LDTGRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAAR 350
Query: 63 VVME 66
+ E
Sbjct: 351 AMEE 354
>AT5G51300.3 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 2 EMDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAE 61
E D L+IG + ++ L F +FG++V A ++KDR TG ++G+GFV +AD +A
Sbjct: 476 EYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMAN 535
Query: 62 RVV--MEKHVIDGRTVEAKKA 80
V M + +GRT+ + A
Sbjct: 536 TAVQAMNGYRFEGRTLAVRIA 556
>AT5G51300.2 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 2 EMDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAE 61
E D L+IG + ++ L F +FG++V A ++KDR TG ++G+GFV +AD +A
Sbjct: 476 EYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMAN 535
Query: 62 RVV--MEKHVIDGRTVEAKKA 80
V M + +GRT+ + A
Sbjct: 536 TAVQAMNGYRFEGRTLAVRIA 556
>AT5G51300.1 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 2 EMDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAE 61
E D L+IG + ++ L F +FG++V A ++KDR TG ++G+GFV +AD +A
Sbjct: 476 EYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMAN 535
Query: 62 RVV--MEKHVIDGRTVEAKKA 80
V M + +GRT+ + A
Sbjct: 536 TAVQAMNGYRFEGRTLAVRIA 556
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 64
KLF+G +SW E L F+ GDVV A ++ D TGR+RG+GFV ++ + E +
Sbjct: 178 KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALES 237
Query: 65 MEKHVIDGRTVEAKKA 80
++ ++GR + A
Sbjct: 238 LDGFELEGRAIRVNLA 253
>AT2G21690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9270114-9270597 REVERSE LENGTH=117
Length = 117
Score = 52.4 bits (124), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 9 FIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEKH 68
F+ G+ DT+E+ L F FG+V+++ I+ DR TG++R FGFV F + +M
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIMIMD 69
Query: 69 VIDGRT 74
V + R+
Sbjct: 70 VEESRS 75
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 111 FVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGV-EKVLYKT 169
FV GL E D + F +FG + D ++YD +T + R FGF+TF+ E+ + + ++
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIMIMD 69
Query: 170 FHELNGKMVEV 180
E K V V
Sbjct: 70 VEESRSKCVNV 80
>AT1G07350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:2257732-2260101 REVERSE LENGTH=382
Length = 382
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 110 IFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKT 169
++V GL +TE D +++F + G +TDV ++ D T+ RGFGFI+ S + +
Sbjct: 77 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSL 136
Query: 170 FHE-LNGKMVEVKRA 183
H L G+++ V++A
Sbjct: 137 DHSVLQGRVITVEKA 151
>AT1G60900.1 | Symbols: | U2 snRNP auxilliary factor, large
subunit, splicing factor | chr1:22424008-22427806
FORWARD LENGTH=589
Length = 589
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 38/57 (66%)
Query: 5 PGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAE 61
P ++F+GG+ + E ++R+ ++FG + ++KDR TG ++G+ F V+ DPSV +
Sbjct: 374 PDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTD 430
>AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 |
chr5:19203801-19204951 FORWARD LENGTH=212
Length = 212
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 34/48 (70%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVF 54
KL+IGG+S T+E L+ F +F V EA +M ++ TGR+RG+GFV F
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNF 79
>AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:27643801-27645386 REVERSE LENGTH=181
Length = 181
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
KL++ G+S+ T E+ LR F+ FG+++ ++ D+ R +GF F+ + A + +
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQG 137
Query: 67 KH--VIDGRTVEAKKAVPRDDQN 87
H +DGR + ++A R D +
Sbjct: 138 MHGKFLDGRVIFVEEAKTRSDMS 160
>AT2G47310.1 | Symbols: | flowering time control protein-related /
FCA gamma-related | chr2:19423791-19426846 FORWARD
LENGTH=512
Length = 512
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 66/158 (41%), Gaps = 12/158 (7%)
Query: 6 GKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFA---DPSVAER 62
KL++ IS E +RQ F+ +G+V E ++ KD+ TG + F+ + + + A
Sbjct: 110 AKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKYKKVEEGNAAIA 169
Query: 63 VVMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITES 122
+ E+ G + K ++ K++V L T+
Sbjct: 170 ALTEQFTFPGEMLPVKVRFAEAERERIGFAPVQLPD--------NPKLYVRCLNKQTTKM 221
Query: 123 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEE 160
+ F ++G I D+ + D + + RG+ F+ F +E
Sbjct: 222 EVNEVFSRYGIIEDIYMALD-DMKICRGYAFVQFSCKE 258