Miyakogusa Predicted Gene

Lj0g3v0235839.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0235839.1 tr|I1LJE3|I1LJE3_SOYBN Coatomer subunit gamma
OS=Glycine max PE=3 SV=1,93.22,0,ARM repeat,Armadillo-type fold; no
description,Armadillo-like helical; Adaptin_N,Clathrin/coatomer
a,CUFF.15760.1
         (585 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G34450.1 | Symbols:  | coatomer gamma-2 subunit, putative / g...  1025   0.0  

>AT4G34450.1 | Symbols:  | coatomer gamma-2 subunit, putative /
           gamma-2 coat protein, putative / gamma-2 COP, putative |
           chr4:16471956-16476795 FORWARD LENGTH=886
          Length = 886

 Score = 1025 bits (2651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/575 (84%), Positives = 536/575 (93%), Gaps = 1/575 (0%)

Query: 1   MAQPFMKKDDDRDDEVEYSPFLGIEKGAVLQEARVFNDPQLDARRCSQVITKLLYLLNQG 60
           MAQP +KKDDD DDE+EYSPF+GIEKGAVLQEARVFNDPQ+D RRCSQVITKLLYLLNQG
Sbjct: 1   MAQPLVKKDDDHDDELEYSPFMGIEKGAVLQEARVFNDPQVDPRRCSQVITKLLYLLNQG 60

Query: 61  ETFTKVEATEVFFAVTKLFQSKDMGLRRMVYLMIKEISPSADEVIIVTSSLMKDMNSKID 120
           E+FTKVEATEVFF+VTKLFQSKD GLRRMVYL+IKE+SPS+DEVIIVTSSLMKDMNSKID
Sbjct: 61  ESFTKVEATEVFFSVTKLFQSKDTGLRRMVYLIIKELSPSSDEVIIVTSSLMKDMNSKID 120

Query: 121 MYRANAIRVLCRITDGTLLAQIERYLKQAIVDKNPVVASAALISGIHLLHTNPEIVKRWS 180
           MYRANAIRVLCRI DGTLL QIERYLKQAIVDKNPVV+SAAL+SG+HLL TNPEIVKRWS
Sbjct: 121 MYRANAIRVLCRIIDGTLLTQIERYLKQAIVDKNPVVSSAALVSGLHLLKTNPEIVKRWS 180

Query: 181 NEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPIAQCLLIRYTSQ 240
           NEVQE +QSR+ALVQFHALALLHQIRQNDRLAVSKLV SLTRG+VRSP+AQCLLIRYTSQ
Sbjct: 181 NEVQEGIQSRSALVQFHALALLHQIRQNDRLAVSKLVGSLTRGSVRSPLAQCLLIRYTSQ 240

Query: 241 VIRESGNNTQTGDRPFYDFLESCLRHKSEMVIFESARAITELNGVTSRELAPAITVLQLF 300
           VIR+  N+ Q+G+RPFY+FLESCLRHK+EMVI E+ARAITEL+GVTSREL PAITVLQLF
Sbjct: 241 VIRDMANHGQSGERPFYEFLESCLRHKAEMVILEAARAITELDGVTSRELTPAITVLQLF 300

Query: 301 LSSSKPVLRFAAVRTLNKVAMTHPMSVTNCNIDMESLISDQNRSXXXXXXXXXXKTGNES 360
           LSS +PVLRFAAVRTLNKVAMTHPM+VTNCNIDMESLISDQNRS          KTGNES
Sbjct: 301 LSSPRPVLRFAAVRTLNKVAMTHPMAVTNCNIDMESLISDQNRSIATLAITTLLKTGNES 360

Query: 361 SVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFDYKK 420
           SV+RLMKQITNFMSDIADEFKIVVV+AIRSLC+KFPLKYRSLM FLSNILREEGGF+YK+
Sbjct: 361 SVERLMKQITNFMSDIADEFKIVVVDAIRSLCVKFPLKYRSLMTFLSNILREEGGFEYKR 420

Query: 421 AIVDSIVILIRDIPDAKETGLLHLCEFIEDCEFTYLSTQILHFLGIEGPKTSDPSKYIRF 480
           AIVDSIV +IRDIPDAKE+GLLHLCEFIEDCEFTYLSTQILHFLGIEGP TSDPSKYIR+
Sbjct: 421 AIVDSIVTIIRDIPDAKESGLLHLCEFIEDCEFTYLSTQILHFLGIEGPNTSDPSKYIRY 480

Query: 481 IYNRVHLENATVRASAVSTLARFGAAVDEIKPRIFVLLRRCLFDSDDEVRDRATLYLNTL 540
           IYNRVHLENATVRA+AVSTLA+FG  V+ +KPRI VLL+RC++DSDDEVRDRATLYL+ L
Sbjct: 481 IYNRVHLENATVRAAAVSTLAKFGFMVESLKPRITVLLKRCIYDSDDEVRDRATLYLSVL 540

Query: 541 GDDGSVVETDKDVNDFLFGPFDIPLVNLESSLKNY 575
           G DG+ V+TDK+  DFLFG  ++PLVN+E+SLKNY
Sbjct: 541 GGDGT-VDTDKESKDFLFGSLEVPLVNMETSLKNY 574